Co-reporter:Youhei Chitose, Manabu Abe, Ko Furukawa, Jhe-Yi Lin, Tzu-Chau Lin, and Claudine Katan
Organic Letters May 19, 2017 Volume 19(Issue 10) pp:
Publication Date(Web):May 9, 2017
DOI:10.1021/acs.orglett.7b00957
Co-reporter:Huabin Wan;Hongmin Li;Jian Xu;Zhuang Wu;Qifan Liu;Xianxu Chu;Didier Bégué;Xiaoqing Zeng
Organic Chemistry Frontiers 2017 vol. 4(Issue 9) pp:1839-1848
Publication Date(Web):2017/08/22
DOI:10.1039/C7QO00277G
N-Methylcarbamoyl azide Me(H)NC(O)N3 has been synthesized and structurally characterized. Both N3 and CH3 groups in the molecule adopt a syn conformation with the CO bond. Upon flash vacuum pyrolysis at 800 K, the azide mainly decomposes into Me(H)NNCO/N2 and MeNCO/HN3 through Curtius-rearrangement and a retro-ene reaction, respectively. In contrast, 193 and 266 nm laser photolysis of Me(H)NC(O)N3 in cryogenic matrices (Ar, Ne, and N2) leads to stepwise Curtius-rearrangement via the intermediacy of carbamoylnitrene Me(H)NC(O)N, for which two conformers with the CH3 group being in syn and anti conformations to the CO bond have been unambiguously identified by matrix-isolation IR spectroscopy. Triplet multiplicity of Me(H)NC(O)N (|D/hc| = 1.57 cm−1 and |E/hc| = 0.012 cm−1) and another two carbamoylnitrenes H2NC(O)N (|D/hc| = 1.59 cm−1 and |E/hc| = 0.018 cm−1) and Me2NC(O)N (|D/hc| = 1.55 cm−1 and |E/hc| = 0.016 cm−1) has been further established by matrix-isolation EPR spectroscopy. Subsequent visible light irradiation (420–460 nm) of Me(H)NC(O)N results in the exclusive formation of Me(H)NNCO. The molecular structures of Me(H)NC(O)N3 and Me(H)NC(O)N, multiplicities of the nitrene, and the underlying mechanism for the decomposition of the azide are reasonably explained with quantum chemical calculations by utilizing the B3LYP, CBS-QB3, CCSD(T), and CASPT2 methods.
Co-reporter:Zhuang Wu;Ruijuan Feng;Hongmin Li;Jian Xu;Guohai Deng; Dr. Manabu Abe; Dr. Didier Bégué; Dr. Kun Liu; Dr. Xiaoqing Zeng
Angewandte Chemie 2017 Volume 129(Issue 49) pp:15878-15882
Publication Date(Web):2017/12/04
DOI:10.1002/ange.201710307
AbstractChemical reactions involving quantum mechanical tunneling (QMT) increasingly attract the attention of scientists. In contrast to the hydrogen-tunneling as frequently observed in chemistry and biology, tunneling solely by heavy atoms is rare. Herein, we report heavy-atom tunneling in trifluoroacetyl nitrene, CF3C(O)N. The carbonyl nitrene CF3C(O)N in the triplet ground state was generated in cryogenic matrices by laser (193 or 266 nm) photolysis of CF3C(O)N3 and characterized by IR and EPR spectroscopy. In contrast to the theoretically predicted activation barriers (>10 kcal mol−1), CF3C(O)N undergoes rapid rearrangement into CF3NCO with half-life times of less than 10 min and unprecedentedly large 14N/15N kinetic isotope effects (1.18–1.33) in solid Ar, Ne, and N2 matrices even at 2.8 K. The tunneling disappearance of CF3C(O)N becomes much slower in the chemically active toluene and in 2-methyltetrahydrofuran at 5 K.
Co-reporter:Zhuang Wu;Ruijuan Feng;Hongmin Li;Jian Xu;Guohai Deng; Dr. Manabu Abe; Dr. Didier Bégué; Dr. Kun Liu; Dr. Xiaoqing Zeng
Angewandte Chemie International Edition 2017 Volume 56(Issue 49) pp:15672-15676
Publication Date(Web):2017/12/04
DOI:10.1002/anie.201710307
AbstractChemical reactions involving quantum mechanical tunneling (QMT) increasingly attract the attention of scientists. In contrast to the hydrogen-tunneling as frequently observed in chemistry and biology, tunneling solely by heavy atoms is rare. Herein, we report heavy-atom tunneling in trifluoroacetyl nitrene, CF3C(O)N. The carbonyl nitrene CF3C(O)N in the triplet ground state was generated in cryogenic matrices by laser (193 or 266 nm) photolysis of CF3C(O)N3 and characterized by IR and EPR spectroscopy. In contrast to the theoretically predicted activation barriers (>10 kcal mol−1), CF3C(O)N undergoes rapid rearrangement into CF3NCO with half-life times of less than 10 min and unprecedentedly large 14N/15N kinetic isotope effects (1.18–1.33) in solid Ar, Ne, and N2 matrices even at 2.8 K. The tunneling disappearance of CF3C(O)N becomes much slower in the chemically active toluene and in 2-methyltetrahydrofuran at 5 K.
Co-reporter:Kazuyuki Uchida; Soichi Ito; Masayoshi Nakano; Manabu Abe;Takashi Kubo
Journal of the American Chemical Society 2016 Volume 138(Issue 7) pp:2399-2410
Publication Date(Web):January 29, 2016
DOI:10.1021/jacs.5b13033
First isolation and characterization of biphenalenylidenes, which have long been unidentified reactive intermediates on the decomposition pathway of phenalenyl radical, were accomplished. Photoinduced electrocyclic ring-opening reaction of anti-dihydroperopyrene resulted in a successful conversion to E-biphenalenylidene, which enabled a detailed investigation of the electronic structure of E-biphenalenylidene by means of spectroscopic techniques. A stereoisomer, Z-biphenalenylidene, was also observed by suppressing a facile E–Z isomerization to E-biphenalenylidene in a rigid matrix. Furthermore, Z-biphenalenylidene demonstrated a thermal ring-closure in conrotatory process, which is not conforming to the Woodward–Hoffmann rule. These unusual reactivities of biphenalenylidene are ascribed to the ground states destabilized by its singlet biradical character, which was fully supported by theoretical calculations. The presence of E-biphenalenylidene on the decomposition pathway of phenalenyl was confirmed experimentally, leading to the full understanding of the decomposition mechanism of phenalenyl.
Co-reporter:Naomitsu Komori, Satish Jakkampudi, Ryusei Motoishi, Manabu Abe, Kenji Kamada, Ko Furukawa, Claudine Katan, Wakako Sawada, Noriko Takahashi, Haruo Kasai, Bing Xue and Takayoshi Kobayashi
Chemical Communications 2016 vol. 52(Issue 2) pp:331-334
Publication Date(Web):21 Oct 2015
DOI:10.1039/C5CC07664A
A new chromophore, 2-(4-nitrophenyl)benzofuran (NPBF), was designed for two-photon (TP) uncaging using near-IR light. The TP absorption (TPA) cross-sections of the newly designed NPBF chromophore were determined to be 18 GM at 720 nm and 54 GM at 740 nm in DMSO. The TP uncaging reaction of a caged benzoate with the NPBF chromophore quantitatively produced benzoic acid with an efficiency (δu) of ∼5.0 GM at 740 nm. The TP fragmentation of an EGTA unit was observed with δu = 16 GM. This behavior makes the new chromophore a promising TP photoremovable protecting group for physiological studies.
Co-reporter:Jianhuai Ye;Dr. Sayaka Hatano;Dr. Manabu Abe;Dr. Ryohei Kishi;Yusuke Murata;Dr. Masayoshi Nakano;Dr. Waldemar Adam
Chemistry - A European Journal 2016 Volume 22( Issue 7) pp:
Publication Date(Web):
DOI:10.1002/chem.201504855
Co-reporter:Manabu Abe, Saori Tada, Takemi Mizuno, and Katsuyoshi Yamasaki
The Journal of Physical Chemistry B 2016 Volume 120(Issue 29) pp:7217-7226
Publication Date(Web):June 29, 2016
DOI:10.1021/acs.jpcb.6b05342
Versatile transformations of azo compounds are utilized not only in synthetic organic chemistry but also in materials science. In this study, a hitherto unknown stereoselectivity was observed by low-temperature in situ NMR spectroscopy for the photochemical denitrogenation of a cyclic azoalkane (2,3-diazabicyclo[2.2.1]heptane) derivative. Direct (singlet) photodenitrogenation at 188 K afforded two products, the configurationally retained ring-closed compound (ret-CP) and the inverted compound (inv-CP), in a ratio of 82/18 (±3) (ret-CP/inv-CP), with an overall yield of >95%. Triplet-sensitized denitrogenation at 199 K using benzophenone (3BP*) or xanthone (3Xan*) selectively produced inv-CP, with a ret-CP/inv-CP ratio of 7/93 (±3). Thermal isomerization of inv-CP into ret-CP was observed by low-temperature NMR spectroscopy. Transient absorption spectroscopy revealed that two distinct singlet diradicals are involved in the formation of CP during direct photodenitrogenation, that is, puckered puc-1DR and planar pl-1DR diradicals. The former produces ret-CP, whereas the latter affords inv-CP. Kinetic analysis using the integrated profiles method was used to determine the molecular absorption coefficient of pl-1DR (ε560 = 4900 ± 250 M–1 cm–1) for the first time. The involvement of the puckered singlet diradical resolves the mechanistic puzzle of stereoselective denitrogenation of diazabicycloheptane-type azoalkanes.
Co-reporter:Jianhuai Ye;Dr. Sayaka Hatano;Dr. Manabu Abe;Dr. Ryohei Kishi;Yusuke Murata;Dr. Masayoshi Nakano;Dr. Waldemar Adam
Chemistry - A European Journal 2016 Volume 22( Issue 7) pp:2299-2306
Publication Date(Web):
DOI:10.1002/chem.201503975
Abstract
In the photochemical denitrogenation of 1,4-diaryl-2,3-diazabicyclo[2.2.1]heptane (AZ6) bearing sterically hindered substituents, a curious new absorption band at about 450 nm was observed under low-temperature matrix conditions, together with the previously well-characterized planar singlet diradical pl-1DR6 with λmax=≈580 nm. The 450 nm species was electron paramagnetic resonance (EPR)-silent. Instead of generating the planar diradical pl-1DR6 and the precursor azoalkane AZ6 upon warming, the ring-closed bicyclo[2.1.0]pentane derivative SB6, that is, the AZ6 denitrogenation product was identified. Based on product analysis, low-temperature spectroscopic observations, high-level quantum-mechanical computations, viscosity effect, and laser-flash photolysis, the puckered singlet diradicaloid puc-1DR6 was assigned to the new 450 nm absorption. The latter was detected experimentally at the same time as the planar singlet diradical pl-1DR6. Sterically demanding substituents as well as viscosity impediments were essential for the detection of the experimentally hitherto unknown puckered singlet cyclopentane-1,3-diyl diradicaloid puc-1DR6, that is, the third isomer in homolysis. The present findings should stimulate future work on the mechanistically fascinating stereoselectivity documented in the formation of bicyclo[2.1.0]pentanes during the 2,3-diazabicyclo[2.2.1]heptane denitrogenation.
Translation abstract
Co-reporter:Yasuyuki Omokawa;Sayaka Hatano
Journal of Physical Organic Chemistry 2015 Volume 28( Issue 2) pp:116-120
Publication Date(Web):
DOI:10.1002/poc.3381
High-spin organic molecules have attracted much attention as spin sources for magnetic materials. In this paper, a novel high-spin organic molecule was designed according to a logical strategy. A 2,2-dimethylcyclopentane-1,3-diyl diradical unit was utilized as a spin source and a spin-bridged fragment. In addition, nitroxides were introduced as spin sources. Quintet electron-spin resonance (ESR) signals, which were attributed to the 1,3-di(3′-nitoroxyphenyl)-2,2-dimethylcyclopentane-1,3-diyl tetraradical (TR), were observed in a 2-methyltetrahydrofuran glassy matrix at 80 K after the photodenitrogenation of a newly synthesized azoalkanes AZ. A simulation of the signal provided the zero-field splitting parameters D (|D|/hc = 0.0127 cm−1) and E (|E|/hc = 0.0014 cm−1) for the quintet state of the tetraradical TR. The parameter D of the quintet state of TR was found similar to those of the previously reported quintet spin states of tetraradical TR1 with two cyclobutane-1,3-diyl units (0.0190 cm−1) and TR2 with two 2,2-dimethylcyclopentane-1,3-diyl diradicals (0.0116 cm−1). Copyright © 2014 John Wiley & Sons, Ltd.
Co-reporter:Srikanth Boinapally, Bo Huang, Manabu Abe, Claudine Katan, Jun Noguchi, Satoshi Watanabe, Haruo Kasai, Bing Xue, and Takayoshi Kobayashi
The Journal of Organic Chemistry 2014 Volume 79(Issue 17) pp:7822-7830
Publication Date(Web):August 7, 2014
DOI:10.1021/jo501425p
Caging and photochemical uncaging of the excitatory neurotransmitter l-glutamate (glu) offers a potentially valuable tool for understanding the mechanisms of neuronal processes. Designing water-soluble caged glutamates with the appropriate two-photon absorption property is an attractive strategy to achieve this. This paper describes the design, synthesis, and photochemical reactivity of caged glutamates with π-extended 1,2-dihydronaphthalene structures, which possess a two-photon cross-section of ∼120 GM and an excellent buffer solubility (up to 115 mM). High yields up to 99% glutamate were observed in the photolysis of two caged glutamates. Suzuki–Miyaura cross-coupling and Buchwald–Hartwig amination were used as the key reactions to synthesize the caged compounds.
Co-reporter:Akihiro Maeda, Takahide Oshita, Manabu Abe, and Taka-aki Ishibashi
The Journal of Physical Chemistry B 2014 Volume 118(Issue 14) pp:3991-3997
Publication Date(Web):March 26, 2014
DOI:10.1021/jp500636j
CN stretch bands of singlet and triplet cyclopentane-1,3-diyl diradicals (1,3-di(4-cyanophenyl)-2,2-dimethoxyoctahydropentalene-1,3-diyl and 1,3-di(4-cyanophenyl)-2,2-dimethyloctahydropentalene-1,3-diyl) were observed by time-resolved IR spectroscopy. CN stretching wavenumbers of the singlet and triplet diradicals were downshifted by 10 and 19 cm–1 from those of their corresponding ring-closed compounds, which are in closed-shell electronic states, respectively. The observed downshifts are attributed to the bond-order decrease in the CN bonds due to the contribution from a resonance structure that has cumulative double bonds (C═C═N•) at the para-positions of the radical carbons. This resonance structure is only possible when the molecules have unpaired electrons; thus, the wavenumber downshift can be regarded as an experimental manifestation of the radical character of the diradicals. The observed CN stretching wavenumbers indicate that the radical character of the singlet diradical is less significant than that of the triplet. The smaller radical character is ascribed to the contribution from the zwitterionic and π-single bonding resonance structures in the singlet diradical. Unrestricted DFT calculations at the B3LYP level of theory with the 6-31G(d) basis set reproduced the small/large relationship between the wavenumber downshifts of the singlet and triplet diradicals; however, the shift of the singlet diradical was overestimated.
Co-reporter:Manabu Abe
Chemical Reviews 2013 Volume 113(Issue 9) pp:7011
Publication Date(Web):July 24, 2013
DOI:10.1021/cr400056a
Co-reporter:Yuya Sakamoto, Srikanth Boinapally, Claudine Katan, Manabu Abe
Tetrahedron Letters 2013 Volume 54(Issue 52) pp:7171-7174
Publication Date(Web):25 December 2013
DOI:10.1016/j.tetlet.2013.10.107
‘Caging’ and ‘uncaging’ bioactive substrates are key techniques in studying a wide variety of biological processes. In the present study, two-types of novel caged glutamates with a two-photon absorption (TPA) core, that is, π-extended coumarin, were synthesized and their photochemical release of glutamate was analyzed. The high yields of glutamate (>92%) were observed in the photolysis of compounds 1 and 10, respectively.
Co-reporter:Manabu Abe, Shinji Watanabe, Hiroshi Tamura, Srikanth Boinapally, Kousei Kanahara, and Yoshihisa Fujiwara
The Journal of Organic Chemistry 2013 Volume 78(Issue 5) pp:1940-1948
Publication Date(Web):September 17, 2012
DOI:10.1021/jo3019472
The photoreaction of a series of 2,3-diazabicyclo[2.2.1]hept-2-ene (DBH) derivatives, in which various substituents (X) were introduced at the methano bridge carbon of C(7), was investigated under direct (>290 nm) and triplet-sensitized (Ph2CO, >370 nm) irradiation conditions of the azo chromophore (−Cβ–Cα–N═N–Cα–Cβ−). The azo compounds offered a unique opportunity to see the substituent X effect at the remote position of the azo chromophore on the reactivity of the triplet excited state of bicyclic azoalkanes. The present study led to the first observation of the unusual Cα–Cβ bond-cleavage reaction without the ring stiffness, that is, the structural rigidity, in the triplet state of the cyclic azoalkanes. The stereoelectronic effects were found to play an important role in lowering the activation energy of the Cα–Cβ bond-cleavage reaction. NBO analyses at the M06-2X/cc-PVDZ level of theory confirmed the stereoelectronic effect.
Co-reporter:Manabu Abe, Jianhuai Ye and Megumi Mishima
Chemical Society Reviews 2012 vol. 41(Issue 10) pp:3808-3820
Publication Date(Web):29 Feb 2012
DOI:10.1039/C2CS00005A
Localized singlet diradicals (biradicals) are key intermediates in chemical reactions involving homolytic bond-cleavage and formation processes. The molecular structure and electronic structure had been historically elusive due to the short-lived character of the reactive intermediates. In the last 15 years, a significant development of singlet diradical chemistry was achieved after the pioneering findings of long-lived singlet diradicals. In this tutorial review, the recent development of localized singlet diradical chemistry is summarized and discussed. The following subjects are included (a) the mechanism by which the ground state spin-multiplicity of localized 1,3-diradicals is controlled; (b) the substituent and heteroatom effect on the most stable electronic configuration of the singlet 1,3-diradicals, type-1 versus type-2; (c) the molecular design for the long-lived singlet ground state diradicals; (d) the generation and characterization of the singlet diradicals; and (e) the future prospects.
Co-reporter:Manabu Abe, Izumi Iwakura, Atushi Yabushita, Shingo Yagi, Jun Liu, Kotaro Okamura, Takayoshi Kobayashi
Chemical Physics Letters 2012 Volume 527() pp:79-83
Publication Date(Web):27 February 2012
DOI:10.1016/j.cplett.2012.01.024
Abstract
The mechanism of denitrogenation for 2,3-diazabicyclo[2.2.1]hept-2-ene (DBH) derivatives was investigated using a visible 5-fs pulse laser. The time-dependent wavenumber changes observed in this study revealed that the concerted denitrogenation occurs in the parent DBH. However, a stepwise denitrogenation mechanism was found for the 7,7-diethoxy-substituted DBH derivative.
Co-reporter:Manabu Abe, Haruka Furunaga, Dongxia Ma, Laura Gagliardi, and Graham J. Bodwell
The Journal of Organic Chemistry 2012 Volume 77(Issue 17) pp:7612-7619
Publication Date(Web):August 9, 2012
DOI:10.1021/jo3016105
Stretch effects induced by two types of molecular strain were examined by quantum chemical calculations at the B3LYP/6-31G(d), B3LYP/cc-PVDZ, CCSD/6-31G(d), and CASPT2/ANO-RCC-VTZP level of theory, to design persistent multiradicals such as localized diradicals and oxyallyls. The cooperative molecular strain (Type-1) induced by the spiro[5.5]undecane and bicyclo[2.1.0]cyclopentane structures was found to significantly destabilize in energy the ring-closed compounds of the diradicals, leading to small energy differences between the diradicals and the σ-bonded compounds. Another stretch effect (Type-2) induced by macrocyclic systems was also found to energetically destabilize the corresponding ring-closed structures of the 1,3-diradicals. The computational studies predict that the two types of stretch effects are quite effective in lowering the energy barriers of the bond-breaking reaction of the ring-closed compounds and in generating long-lived localized diradicals and oxyallyl derivatives.
Co-reporter:Youhei Yabuno ; Yoshikazu Hiraga ; Ryukichi Takagi
Journal of the American Chemical Society 2011 Volume 133(Issue 8) pp:2592-2604
Publication Date(Web):February 9, 2011
DOI:10.1021/ja1088524
A set of photochemical oxetane formation reactions, i.e., the Paternò−Büchi (PB) reactions, of tetrahydrobenzofuranol derivatives 1a−d with benzophenone (BP) was investigated to examine poorly understood hydroxy-group directivity on regio- and stereoselectivity. The selectivities of the PB reactions for allylic alcohols 1a,d were found to be largely dependent upon the concentration of the allylic alcohols and the reaction temperature. The temperature-dependent change of the regioselectivity at high concentrations of allylic alcohols was similar to that of the hydroxy-protected methyl ether 1b and tetrahydrobenzofuran (1c). The effect of concentration on regioselectivity can be explained by the hydrogen-bonded aggregates, which mimic the selectivities observed during the PB reaction of 1b,c. The hydroxy-directed cis-selectivity of the higher-substituted oxetane 3a,d formed at low concentration of 1a,d was found to be larger than that at the higher concentration of 1a,d. The cis-selectivity of 3a,d was found to be higher than that of the lower-substituted oxetane 2a,d. The regioselectivity of the cis-configured oxetanes was higher than that of the trans-configured oxetanes. These experimental results strongly suggest that hydroxy-group directivity, induced by hydrogen-bonding stabilization, plays a role in controlling the regio- and stereoselectivity of the PB reactions. The steric effect was also responsible for the diastereoselectivity, as shown by the fact that the cis selectivity in 3d was higher than that in 3a. Computational studies at the (U)MP2 and (U)DFT level of theory revealed that hydrogen-bonding stabilization becomes important only in the excited complex (exciplex) between the triplet excited state of carbonyls and alkenes, in which the charge transfer occurs from the alkene to the excited carbonyl to make the carbonyl oxygen nucleophilic. No significant stabilization energy was found in the intermediary triplet state of biradicals. The combined experimental and computational studies have clarified the origin of the poorly understood hydroxy-group effect on a high degree of regio- and stereoselectivity, i.e., the cooperative effect of hydrogen-bonding stabilization in exciplexes and the steric bulk of the substituents.
Co-reporter:Shingo Yagi;Yoshikazu Hiraga;Ryukichi Takagi
Journal of Physical Organic Chemistry 2011 Volume 24( Issue 10) pp:894-901
Publication Date(Web):
DOI:10.1002/poc.1872
A stereochemical deuterium-labeling study of the thermal and photochemical denitrogenation of the exo-selectively dideuterated azoalkane 7,7-diethoxy-2,3-diazabicyclo[2.2.1]hept-2-ene (AZb-d2) was performed in order to obtain information about the denitrogenation mechanism of 2,3-diazabicyclo[2.2.1]hept-2-ene derivatives. A double-inversion product 5,5-diethoxybicyclo[2.1.0]pentane (CPb), that is, inv-CPb, was selectively formed over the retention product ret-CPb in a ratio of inv-CPb/ret-CPb = 73/27 under flash vacuum pyrolysis (FVP) conditions (365 °C/~1.0 × 10−2 mmHg). The formation of inv-CPb was slightly higher than that of ret-CPb in the direct photolysis of AZb-d2 at 70 °C. An approximately 1:1 mixture of the two products was observed after the direct photolysis at 7 °C. A stereoselective formation of 1,5-diethoxycyclopent-1-ene (MG-d2) was found in the denitrogenation of AZb-d2 under the FVP conditions. Computational studies at the broken-symmetry (BS)-(U)CCSD/6-31G(d) level of theory revealed that the stepwise C–N bond cleavage is the energetically favored process of the denitrogenation mechanism. The SH2 trajectory of the nitrogen-extrusion process through an equatorial conformation of the intermediary diazenyl diradical DZb-eq was found for the formation of inv-CPb. An alternative route for inv-CPb was found through an axial conformation of DZb-ax, which was suggested by the trajectory calculations using a Born–Oppenheimer molecular dynamics at the UB3LYP/6-31G(d). Copyright © 2011 John Wiley & Sons, Ltd.
Co-reporter:Ken Hisamoto, Yoshikazu Hiraga and Manabu Abe
Photochemical & Photobiological Sciences 2011 vol. 10(Issue 9) pp:1469-1473
Publication Date(Web):03 May 2011
DOI:10.1039/C1PP05056G
The Paternò–Büchi (PB) reaction of geraniol derivatives 1, which contain allylic alcohol functionality and unfunctionalized double bonds, with benzophenone was investigated to see the effect of the hydroxyl group on the regioselectivity of the oxetane formation, i.e., 2/3. At low concentration of geraniol (1a), oxetanes 2a and 3a were formed in a ratio of 2a/3a = ca. 50/50. The oxetane 2a is derived from the PB reaction at the allylic alcohol moiety, whereas the PB reaction at the unfunctionalized double bond produces the oxetane 3a. The PB reaction of the hydroxy-protected methyl ether 1b and acetate 1c gave selectively oxetanes 3b,c derived from the reaction at the more nucleophilic double bond, 2/3 ∼ 15/85. The hydroxyl-group effect was found to be small, but apparently increased the formation of 2a in the PB reaction with geraniol (1a).
Co-reporter:Takeshi Nakamura;Laura Gagliardi
Journal of Physical Organic Chemistry 2010 Volume 23( Issue 4) pp:300-307
Publication Date(Web):
DOI:10.1002/poc.1643
Abstract
Quantum chemical calculations were performed to investigate the cooperative effect of the nitrogen and silicon atoms on the singlet–triplet energy spacing and the reactivity of the singlet state in 1,2-diazacyclopentane-3,5-diyls and 1,2-diaza-4-silacyclopentane-3,5-diyls. The largest singlet–triplet energy gap ( = −36.1 kcal/mol) found so far in localized 1,3-diradicals was in the C2v symmetry of 4,4-difluoro-1,2-diaza-4-silacyclopentane-3,5-diyl at the UB3LYP/6-31G(d) level of theory. The cooperative effect was also found in the energy differences of singlet diradicals with the corresponding ring-closing compounds, bicyclo[2.1.0]pentane derivatives. The singlet state of the 1,2-diaza-4-silacyclopentane-3,5-diyls was calculated to be energetically more stable than the ring-closing compound. The notable finding on the stability of the singlet diradicals may be attributed to the resonance structures that specifically stabilize the singlet state of diradicals. The computational studies predict that the singlet 1,2-diaza-4-silacyclopentane-3,5-diyl is a persistent molecule under conditions without intermolecular-trapping reagents. Copyright © 2010 John Wiley & Sons, Ltd.
Co-reporter:Rabih Jahjah Dr.;Abdoulaye Gassama Dr.;Véronique Bulach ;Chikako Suzuki ;Norbert Hoffmann Dr.;Agathe Martinez;Jean-Marc Nuzillard Dr.
Chemistry - A European Journal 2010 Volume 16( Issue 11) pp:3341-3354
Publication Date(Web):
DOI:10.1002/chem.200903045
Abstract
The stereo- and regioselectivity of triplet-sensitised radical reactions of furanone derivatives have been investigated. Furanones 7 a,b were excited to the 3ππ* state by triplet energy transfer from acetone. Intramolecular hydrogen abstraction then occurred such that hydrogen was transferred from the tetrahydropyran to the β position of the furanone moiety. Radical combination of the tetrahydropyranyl and the oxoallyl radicals led to the final products 8 a,b. In the intramolecular reaction, overall, a pyranyl group adds to the α position of the furanone. The effect of conformation was first investigated with compounds 9 a,b carrying an additional substituent on the tether between the furanone and pyranyl moiety. Further information on the effect of conformation and the relative configuration at the pyranyl anomeric centre and the furanone moiety was obtained from the transformations of the glucose derivatives 12, 14, 17 and 18. Radical abstraction occurred at the anomeric centre and at the 5′-position of the glucosyl moiety. Computational studies of the hydrogen-abstraction step were carried out with model structures. The activation barriers of this step for different stereoisomers and the abstraction at the anomeric centre and at the 6‘-position of the tetrahydropyranyl moiety were calculated. The results of this investigation are in accordance with experimental observations. Furthermore, they reveal that the reactivity and regioselectivity are mainly determined in the hydrogen-abstraction step. Intramolecular hydrogen abstraction (almost simultaneous electron and proton transfer) in 3ππ* excited furanones only takes place under restricted structural conditions in a limited number of conformations that are defined by the relative configuration of the substrates. It is observed that in the biradical intermediate, back-hydrogen transfer occurs leading to the starting compound. In the case of glucose derivatives, this reaction led to epimerisation at the anomeric centre.
Co-reporter:Kazuhide Fukuhara, Taku Nakashima, Manabu Abe, Takeshi Masuda, ... Noboru Hattori
Free Radical Biology and Medicine (May 2017) Volume 106() pp:1-9
Publication Date(Web):1 May 2017
DOI:10.1016/j.freeradbiomed.2017.02.014
•Suplatast tosilate (ST) protected lung against hyperoxic lung injury.•ST significantly prolonged the survival of mice exposed to hyperoxia.•A strong antioxidant activity of ST in vivo was demonstrated.•An in vitro scavenging effect of ST on ・OH was proved by EPR spin-trapping assay.Prolonged exposure to hyperoxia produces extraordinary amounts of reactive oxygen species (ROS) in the lung and causes hyperoxic lung injury. Although supraphysiological oxygen is routinely administered for the management of respiratory failure, there is no effective strategy to prevent hyperoxic lung injury. In our previous study, we showed that suplatast tosilate, an asthma drug that inhibits T helper 2 (Th2) cytokines, ameliorated bleomycin-induced lung injury and fibrosis through Th2-independent mechanisms. Because bleomycin also generates ROS, we hypothesized that suplatast tosilate might have antioxidant activity and protect the lung against hyperoxic lung injury. To test this hypothesis, mice exposed to hyperoxia were given suplatast tosilate through drinking water. Treatment with suplatast tosilate significantly prolonged mouse survival, reduced the increases in the numbers of inflammatory cells, levels of the pro-inflammatory cytokines/chemokines IL-6 and MCP-1, and protein in bronchoalveolar lavage fluid, and ameliorated lung injury in histological assessment. Suplatast tosilate treatment also significantly inhibited hyperoxia-induced elevations in the levels of 8-hydroxydeoxyguanosine, a marker of oxidative DNA damage, in bronchoalveolar lavage fluid and 8-isoprostane, a marker of lipid peroxidation, in lung tissue. This finding suggests that suplatast tosilate exerts an antioxidant activity in vivo. In addition, we investigated whether suplatast tosilate has a scavenging effect on hydroxyl radical, the most reactive and harmful ROS, using electron paramagnetic resonance spin-trapping. Suplatast tosilate was shown to scavenge hydroxyl radicals in a dose-dependent manner, and its reaction rate constant with hydroxyl radical was calculated as 2.6×1011 M−1 S−1, which is faster than that of several well-established antioxidants, such as ascorbate, glutathione, and cysteine. These results suggest that suplatast tosilate protects the lung against hyperoxic lung injury by decreasing the degree of oxidative stress induced by ROS, particularly by scavenging hydroxyl radicals. Suplatast tosilate might become a potential therapeutic for hyperoxic lung injury.
Co-reporter:Satish Jakkampudi, Manabu Abe, Naomitsu Komori, Ryukichi Takagi, Ko Furukawa, Claudine Katan, Wakako Sawada, Noriko Takahashi, and Haruo Kasai
ACS Omega Volume 1(Issue 2) pp:193-201
Publication Date(Web):August 9, 2016
DOI:10.1021/acsomega.6b00119
Among biologically active compounds, calcium ions (Ca2+) are one of the most important species in cell physiological functions. Development of new calcium chelators with two-photon absorption (TPA) properties is a state-of-the-art challenge for chemists. In this study, we report the first and efficient synthesis of 5-bromo-2-nitrobenzyl-substituted ethylene glycol tetraacetic acid (EGTA) as a platform for a new generation of calcium chelators with TPA properties in the near-infrared region. New calcium chelators with high TPA properties, that is, a two-photon (TP) fragmentation efficiency of δu = 20.7 GM at 740 nm for 2-(4-nitrophenyl)benzofuran (NPBF)-substituted EGTA (NPBF-EGTA, Kd = 272 nM) and δu = 7.8 GM at 800 nm for 4-amino-4′-nitro-1,1′-biphenyl (BP)-substituted EGTA (BP-EGTA, Kd = 440 nM) derivatives, were synthesized using Suzuki–Miyaura coupling reactions of the bromide with benzofuran-2-boronic acid and 4-(dimethylamino)phenyl boronic acid, respectively. The corresponding acetoxymethyl (AM) esters were prepared and successfully applied to the Ca2+-uncaging reaction triggered by TP photolysis in vivo.Topics: Magnetic processes; Suzuki coupling reaction;
Co-reporter:Manabu Abe, Jianhuai Ye and Megumi Mishima
Chemical Society Reviews 2012 - vol. 41(Issue 10) pp:NaN3820-3820
Publication Date(Web):2012/02/29
DOI:10.1039/C2CS00005A
Localized singlet diradicals (biradicals) are key intermediates in chemical reactions involving homolytic bond-cleavage and formation processes. The molecular structure and electronic structure had been historically elusive due to the short-lived character of the reactive intermediates. In the last 15 years, a significant development of singlet diradical chemistry was achieved after the pioneering findings of long-lived singlet diradicals. In this tutorial review, the recent development of localized singlet diradical chemistry is summarized and discussed. The following subjects are included (a) the mechanism by which the ground state spin-multiplicity of localized 1,3-diradicals is controlled; (b) the substituent and heteroatom effect on the most stable electronic configuration of the singlet 1,3-diradicals, type-1 versus type-2; (c) the molecular design for the long-lived singlet ground state diradicals; (d) the generation and characterization of the singlet diradicals; and (e) the future prospects.
Co-reporter:Naomitsu Komori, Satish Jakkampudi, Ryusei Motoishi, Manabu Abe, Kenji Kamada, Ko Furukawa, Claudine Katan, Wakako Sawada, Noriko Takahashi, Haruo Kasai, Bing Xue and Takayoshi Kobayashi
Chemical Communications 2016 - vol. 52(Issue 2) pp:NaN334-334
Publication Date(Web):2015/10/21
DOI:10.1039/C5CC07664A
A new chromophore, 2-(4-nitrophenyl)benzofuran (NPBF), was designed for two-photon (TP) uncaging using near-IR light. The TP absorption (TPA) cross-sections of the newly designed NPBF chromophore were determined to be 18 GM at 720 nm and 54 GM at 740 nm in DMSO. The TP uncaging reaction of a caged benzoate with the NPBF chromophore quantitatively produced benzoic acid with an efficiency (δu) of ∼5.0 GM at 740 nm. The TP fragmentation of an EGTA unit was observed with δu = 16 GM. This behavior makes the new chromophore a promising TP photoremovable protecting group for physiological studies.