Co-reporter:Dušan Kolarski, Wiktor Szymanski, and Ben L. Feringa
Organic Letters October 6, 2017 Volume 19(Issue 19) pp:
Publication Date(Web):September 11, 2017
DOI:10.1021/acs.orglett.7b02361
The first general two-step, one-pot synthetic route to 6-azopurines is presented. Microwave-assisted nucleophilic aromatic substitution of protected 6-chloropurines with hydrazines or hydrazides, followed by metal-free oxidation with oxygen, gives 6-azopurines in high to excellent yields. Photophysical studies revealed intensive n−π* absorption band that makes trans-to-cis photoswitching possible using visible light (λ = 530 nm).
Co-reporter:Mariangela Di Donato, Michael M. Lerch, Andrea Lapini, Adèle D. Laurent, Alessandro Iagatti, Laura Bussotti, Svante P. Ihrig, Miroslav Medved’, Denis Jacquemin, Wiktor Szymański, Wybren Jan Buma, Paolo Foggi, and Ben L. Feringa
Journal of the American Chemical Society November 8, 2017 Volume 139(Issue 44) pp:15596-15596
Publication Date(Web):October 17, 2017
DOI:10.1021/jacs.7b09081
Donor–acceptor Stenhouse adducts (DASAs) are negative photochromes that hold great promise for a variety of applications. Key to optimizing their switching properties is a detailed understanding of the photoswitching mechanism, which, as yet, is absent. Here we characterize the actinic step of DASA-photoswitching and its key intermediate, which was studied using a combination of ultrafast visible and IR pump–probe spectroscopies and TD-DFT calculations. Comparison of the time-resolved IR spectra with DFT computations allowed to unambiguously identify the structure of the intermediate, confirming that light absorption induces a sequential reaction path in which a Z–E photoisomerization of C2–C3 is followed by a rotation around C3–C4 and a subsequent thermal cyclization step. First and second-generation DASAs share a common photoisomerization mechanism in chlorinated solvents with notable differences in kinetics and lifetimes of the excited states. The photogenerated intermediate of the second-generation DASA was photo-accumulated at low temperature and probed with time-resolved spectroscopy, demonstrating the photoreversibility of the isomerization process. Taken together, these results provide a detailed picture of the DASA isomerization pathway on a molecular level.
Co-reporter:Bartosz Krajnik, Jiawen Chen, Matthew A. Watson, Scott L. Cockroft, Ben L. Feringa, and Johan Hofkens
Journal of the American Chemical Society May 31, 2017 Volume 139(Issue 21) pp:7156-7156
Publication Date(Web):May 12, 2017
DOI:10.1021/jacs.7b02758
Synthetic molecular motors continue to attract great interest due to their ability to transduce energy into nanomechanical motion, the potential to do work and drive systems out-of-equilibrium. Of particular interest are unidirectional rotary molecular motors driven by chemical fuel or light. Probing the mechanistic details of their operation at the single-molecule level is hampered by the diffraction limit, which prevents the collection of dynamic positional information by traditional optical methods. Here, we use defocused wide-field imaging to examine the unidirectional rotation of individual molecular rotary motors on a quartz surface in unprecedented detail. The sequential occupation of nanomechanical states during the UV and heat-induced cycle of rotation are directly imaged in real-time. The approach will undoubtedly prove important in elucidating the mechanistic details and assessing the utility of novel synthetic molecular motors in the future.
Co-reporter:Christopher R. Hall, Jamie Conyard, Ismael A. Heisler, Garth Jones, James Frost, Wesley R. Browne, Ben L. Feringa, and Stephen R. Meech
Journal of the American Chemical Society May 31, 2017 Volume 139(Issue 21) pp:7408-7408
Publication Date(Web):May 10, 2017
DOI:10.1021/jacs.7b03599
Photochemical isomerization in sterically crowded chiral alkenes is the driving force for molecular rotary motors in nanoscale machines. Here the excited-state dynamics and structural evolution of the prototypical light-driven rotary motor are followed on the ultrafast time scale by femtosecond stimulated Raman spectroscopy (FSRS) and transient absorption (TA). TA reveals a sub-100-fs blue shift and decay of the Franck–Condon bright state arising from relaxation along the reactive potential energy surface. The decay is accompanied by coherently excited vibrational dynamics which survive the excited-state structural evolution. The ultrafast Franck–Condon bright state relaxes to a dark excited state, which FSRS reveals to have a rich spectrum compared to the electronic ground state, with the most intense Raman-active modes shifted to significantly lower wavenumber. This is discussed in terms of a reduced bond order of the central bridging bond and overall weakening of bonds in the dark state, which is supported by electronic structure calculations. The observed evolution in the FSRS spectrum is assigned to vibrational cooling accompanied by partitioning of the dark state between the product isomer and the original ground state. Formation of the product isomer is observed in real time by FSRS. It is formed vibrationally hot and cools over several picoseconds, completing the characterization of the light-driven half of the photocycle.
Co-reporter:Thomas van Leeuwen, Wojciech Danowski, Edwin Otten, Sander J. Wezenberg, and Ben L. Feringa
The Journal of Organic Chemistry May 19, 2017 Volume 82(Issue 10) pp:5027-5027
Publication Date(Web):May 1, 2017
DOI:10.1021/acs.joc.7b00852
The enantiomeric homogeneity of light-driven molecular motors based on overcrowded alkenes is crucial in their application as either unidirectional rotors or as chiral multistate switches. It was challenging to obtain these compounds as single enantiomers via the established synthetic procedures due to loss of optical purity in the key step, i.e., the Barton–Kellogg olefination reaction. Searching for strategies to avoid racemization, a new class of light-driven molecular motors was designed, synthesized, and studied. The stereochemical integrity was fully preserved throughout the synthesis, and on the basis of photochemical and kinetic studies using UV/vis, CD, and 1H NMR spectroscopy, it was established that they still function properly as unidirectional molecular motors.
Co-reporter:Thomas van Leeuwen, Jasper Pol, Diederik Roke, Sander J. Wezenberg, and Ben L. Feringa
Organic Letters March 17, 2017 Volume 19(Issue 6) pp:
Publication Date(Web):March 1, 2017
DOI:10.1021/acs.orglett.7b00317
Exploring routes to visible-light-driven rotary motors, the possibility of red-shifting the excitation wavelength of molecular motors by extension of the aromatic core is studied. Introducing a dibenzofluorenyl moiety in a standard molecular motor resulted in red-shifting of the absorption spectrum. UV/vis and 1H NMR spectroscopy showed that these motors could be isomerized with light of wavelengths up to 490 nm and that the structural modification did not impair the anticipated rotary behavior. Extension of the aromatic core is therefore a suitable strategy to apply in pursuit of visible-light-driven molecular motors.
Co-reporter:Jamie Conyard, Peter Stacko, Jiawen Chen, Sophie McDonagh, Christopher R. Hall, Sergey P. Laptenok, Wesley R. Browne, Ben L. Feringa, and Stephen R. Meech
The Journal of Physical Chemistry A March 16, 2017 Volume 121(Issue 10) pp:2138-2138
Publication Date(Web):February 20, 2017
DOI:10.1021/acs.jpca.7b00087
Photochemically driven molecular motors convert the energy of incident radiation to intramolecular rotational motion. The motor molecules considered here execute four step unidirectional rotational motion. This comprises a pair of successive light induced isomerizations to a metastable state followed by thermal helix inversions. The internal rotation of a large molecular unit required in these steps is expected to be sensitive to both the viscosity of the medium and the volume of the rotating unit. In this work, we describe a study of motor motion in both ground and excited states as a function of the size of the rotating units. The excited state decay is ultrafast, highly non-single exponential, and is best described by a sum of three exponential relaxation components. The average excited state decay time observed for a series of motors with substituents of increasing volume was determined. While substitution does affect the lifetime, the size of the substituent has only a minor effect. The solvent polarity dependence is also slight, but there is a significant solvent viscosity effect. Increasing the viscosity has no effect on the fastest of the three decay components, but it does lengthen the two slower decay times, consistent with them being associated with motion along an intramolecular coordinate displacing a large solvent volume. However, these slower relaxation times are again not a function of the size of the substituent. We conclude that excited state decay arises from motion along a coordinate which does not necessarily require complete rotation of the substituents through the solvent, but is instead more localized in the core structure of the motor. The decay of the metastable state to the ground state through a helix inversion occurs 14 orders of magnitude more slowly than the excited state decay, and was measured as a function of substituent size, solvent viscosity and temperature. In this case neither substituent size nor solvent viscosity influences the rate, which is entirely determined by the activation barrier. This result is different to similar studies of an earlier generation of molecular motors, which suggests different microscopic mechanisms are in operation in the different generations. Finally, the rate of photochemical isomerization was studied for the series of motors, and those with the largest volume substituents showed the highest photochemical cross section.
Co-reporter:Jos C. M. Kistemaker, Peter Štacko, Diederik Roke, Alexander T. Wolters, G. Henrieke Heideman, Mu-Chieh Chang, Pieter van der Meulen, Johan Visser, Edwin Otten, and Ben L. Feringa
Journal of the American Chemical Society July 19, 2017 Volume 139(Issue 28) pp:9650-9650
Publication Date(Web):June 19, 2017
DOI:10.1021/jacs.7b04412
Symmetric molecular motors based on two overcrowded alkenes with a notable absence of a stereogenic center show potential to function as novel mechanical systems in the development of more advanced nanomachines offering controlled motion over surfaces. Elucidation of the key parameters and limitations of these third-generation motors is essential for the design of optimized molecular machines based on light-driven rotary motion. Herein we demonstrate the thermal and photochemical rotational behavior of a series of third-generation light-driven molecular motors. The steric hindrance of the core unit exerted upon the rotors proved pivotal in controlling the speed of rotation, where a smaller size results in lower barriers. The presence of a pseudo-asymmetric carbon center provides the motor with unidirectionality. Tuning of the steric effects of the substituents at the bridgehead allows for the precise control of the direction of disrotary motion, illustrated by the design of two motors which show opposite rotation with respect to a methyl substituent. A third-generation molecular motor with the potential to be the fastest based on overcrowded alkenes to date was used to visualize the equal rate of rotation of both its rotor units. The autonomous rotational behavior perfectly followed the predicted model, setting the stage for more advanced motors for functional dynamic systems.
Co-reporter:Jochem T. van Herpt, Marc C. A. Stuart, Wesley R. Browne, and Ben L. Feringa
Langmuir July 16, 2013 Volume 29(Issue 28) pp:8763-8767
Publication Date(Web):July 16, 2013
DOI:10.1021/la401286a
Mechanical triggering of gelation of an organic solution by a carbazole-based bisurea organogelator is described. Both the duration of the mechanical stimulation and the gelator concentration control the gelation process and the characteristics of the gel obtained.
Co-reporter:Jiří Kaleta, Jiawen Chen, Guillaume Bastien, Martin Dračínský, Milan Mašát, Charles T. Rogers, Ben L. Feringa, and Josef Michl
Journal of the American Chemical Society August 2, 2017 Volume 139(Issue 30) pp:10486-10486
Publication Date(Web):June 27, 2017
DOI:10.1021/jacs.7b05404
A new unidirectional light-driven molecular motor suitable for host–guest surface inclusion complexes with tris(o-phenylene)cyclotriphosphazene (TPP) was synthesized. The motor molecules formed regular two-dimensional trigonal arrays covering the large facets of disc-shaped TPP nanocrystals. Photochemical and thermal isomerization studies demonstrated that the light-driven rotation of the anchored motors is similar to that observed in solution and is not compromised neither by either the surface confinement or the density of surface coverage (50 vs 100%).
Co-reporter: Ben L. Feringa
Angewandte Chemie 2017 Volume 129(Issue 37) pp:11206-11226
Publication Date(Web):2017/09/04
DOI:10.1002/ange.201702979
Eine Reise in die Nanowelt: Die Fähigkeit, motorartige Funktionen auf molekularer Ebene zu entwickeln und zu nutzen, bereitet die Grundlage für zahlreiche dynamische molekulare Systeme. B. L. Feringa schildert in seinem Nobel-Aufsatz den Werdegang des Gebiets der molekularen Motoren und erläutert, wie Moleküle durch den Einbau von responsiven und adaptiven Eigenschaften programmiert und ihre Bewegung gesteuert werden kann.
Co-reporter: Ben L. Feringa
Angewandte Chemie International Edition 2017 Volume 56(Issue 37) pp:11060-11078
Publication Date(Web):2017/09/04
DOI:10.1002/anie.201702979
A journey into the nano-world: The ability to design, use and control motor-like functions at the molecular level sets the stage for numerous dynamic molecular systems. In his Nobel Lecture, B. L. Feringa describes the evolution of the field of molecular motors and explains how to program and control molecules by incorporating responsive and adaptive properties.
Co-reporter:Erik B. Pinxterhuis;Jean-Baptiste Gualtierotti;Hero J. Heeres;Johannes G. de Vries
Chemical Science (2010-Present) 2017 vol. 8(Issue 9) pp:6409-6418
Publication Date(Web):2017/08/21
DOI:10.1039/C7SC02783D
Access to enantiopure compounds on large scale in an environmentally friendly and cost-efficient manner remains one of the greatest challenges in chemistry. Resolution of racemates using enantioselective liquid–liquid extraction has great potential to meet that challenge. However, a relatively feeble understanding of the chemical principles and physical properties behind this technique has hampered the development of hosts possessing sufficient resolving power for their application to large scale processes. Herein we present, employing the previously untested SPINOL based phosphoric acids host family, an in depths study of the parameters affecting the efficiency of the resolution of amino-alcohols in the optic of further understanding the core principles behind ELLE. We have systematically investigated the dependencies of the enantioselection by parameters such as the choice of solvent, the temperature, as well as the pH and bring to light many previously unsuspected and highly intriguing interactions. Furthermore, utilizing these new insights to our advantage, we developed novel, highly efficient, extraction and resolving protocols which provide remarkable levels of enantioselectivity. It was shown that the extraction is catalytic in host by demonstrating transport in a U-tube and finally it was demonstrated how the solvent dependency could be exploited in an unprecedented triphasic resolution system.
Co-reporter:Thomas van Leeuwen;G. Henrieke Heideman;Depeng Zhao;Sander J. Wezenberg
Chemical Communications 2017 vol. 53(Issue 48) pp:6393-6396
Publication Date(Web):2017/06/13
DOI:10.1039/C7CC03188B
The transfer of chirality from a molecular motor to a dynamic helical polymer via ionic interactions was investigated. A dopant with photoswitchable chirality was able to induce a preferred helicity in a poly(phenylacetylene) polymer and the helicity is inverted upon irradiation. The findings described herein will advance the development of functional and responsive polymeric systems.
Co-reporter:Tjalling R. Canrinus;Florian J. R. Cerpentier;Wesley R. Browne
Chemical Communications 2017 vol. 53(Issue 10) pp:1719-1722
Publication Date(Web):2017/01/31
DOI:10.1039/C7CC00017K
A delicate interplay of anisotropic hydrophobic/hydrophilic, π–π stacking, ionic and hydrogen bond interactions determine the strength of hydrogelators and are considered key factors in efforts to design potent small molecule hydrogelators. Here we show that solvent deuteration and electrolytic strength affect the strength of hydrogels formed from amino acid modified C3-symmetric cyclohexane trisamides profoundly. Gels formed by self-assembly through heating/cooling of solutions or by pH switching show up to a 30 °C increase in their melting temperatures in D2O compared to H2O. The unusually large solvent isotope effect on gel formation and thermal properties indicates that, in contrast to expectations, hydrogen bonding is not the primary determinant of gel strength but instead that hydrophobic interactions between the gelator molecules and the terminal carboxylic acid units are of greater importance. A conclusion that is supported by a similarly large effect of electrolytes on gel strength.
Co-reporter:D. J. van Dijken;P. Štacko;M. C. A. Stuart;W. R. Browne;B. L. Feringa
Chemical Science (2010-Present) 2017 vol. 8(Issue 3) pp:1783-1789
Publication Date(Web):2017/02/28
DOI:10.1039/C6SC02935C
The concept of using chirality to dictate dimensions and to store chiral information in self-assembled nanotubes in a fully controlled manner is presented. We report a photoresponsive amphiphile that co-assembles with its chiral counterpart to form nanotubes and demonstrate how chirality can be used to effect the formation of either micrometer long, achiral nanotubes or shorter (∼300 nm) chiral nanotubes that are bundled. The nature of these assemblies is studied using a variety of spectroscopic and microscopic techniques and it is shown that the tubes can be disassembled with light, thereby allowing the chiral information to be erased.
Co-reporter:Salma Kassem;Thomas van Leeuwen;Anouk S. Lubbe;Miriam R. Wilson;David A. Leigh
Chemical Society Reviews 2017 vol. 46(Issue 9) pp:2592-2621
Publication Date(Web):2017/05/09
DOI:10.1039/C7CS00245A
Motor proteins are nature's solution for directing movement at the molecular level. The field of artificial molecular motors takes inspiration from these tiny but powerful machines. Although directional motion on the nanoscale performed by synthetic molecular machines is a relatively new development, significant advances have been made. In this review an overview is given of the principal designs of artificial molecular motors and their modes of operation. Although synthetic molecular motors have also found widespread application as (multistate) switches, we focus on the control of directional movement, both at the molecular scale and at larger magnitudes. We identify some key challenges remaining in the field.
Co-reporter:Anouk S. Lubbe;Wiktor Szymanski
Chemical Society Reviews 2017 vol. 46(Issue 4) pp:1052-1079
Publication Date(Web):2017/02/20
DOI:10.1039/C6CS00461J
There is a growing interest in the photoregulation of biological functions, due to the high level of spatiotemporal precision achievable with light. Additionally, light is non-invasive and waste-free. In particular, the photoregulation of oligonucleotide structure and function is a rapidly developing study field with relevance to biological, physical and material sciences. Molecular photoswitches have been incorporated in oligonucleotides for 20 years, and the field has currently grown beyond fundamental studies on photochemistry of the switches and DNA duplex stability, and is moving towards applications in chemical biology, nanotechnology and material science. Moreover, the currently emerging field of photopharmacology indicates the relevance of photocontrol in future medicine. In recent years, a large number of publications has appeared on photoregulation of DNA and RNA structure and function. New strategies are evaluated and novel, exciting applications are shown. In this comprehensive review, the key strategies for photoswitch inclusion in oligonucleotides are presented and illustrated with recent examples. Additionally the applications that have emerged in recent years are discussed, including gene regulation, drug delivery and materials design. Finally, we identify the challenges that the field currently faces and look forward to future applications.
Co-reporter:M. Vlatković;J. Volarić;B. S. L. Collins;L. Bernardi;B. L. Feringa
Organic & Biomolecular Chemistry 2017 vol. 15(Issue 39) pp:8285-8294
Publication Date(Web):2017/10/11
DOI:10.1039/C7OB01851G
Two novel bisthiourea molecular motor-based catalysts were designed and their dynamic control of activity and stereoselectivity in the Henry reaction using heat and light as external stimuli was investigated. Enantioselective organocatalysis studies established that a basic functional group is not required within the catalyst core to effect efficient dual stereocontrol, illustrating novel stimuli responsive organocatalysts.
Co-reporter:Anouk S. Lubbe, Thomas van Leeuwen, Sander J. Wezenberg, Ben L. Feringa
Tetrahedron 2017 Volume 73, Issue 33(Issue 33) pp:
Publication Date(Web):17 August 2017
DOI:10.1016/j.tet.2017.06.049
The design and construction of dynamic functional molecular systems, which mimic some of the properties of living systems, pose a huge contemporary challenge. Recent developments in supramolecular self-assembly, molecular switches, motors and machines, and chemical reaction networks, offer an excellent basis for integrating dynamic properties in molecular systems. In this perspective, we discuss different approaches towards dynamic functional molecular systems covering areas such as translated motion, dissipative self-assembly, self-regulation and biohybrid systems. The selected examples illustrate the level of control and complexity that can be achieved at present in this rapidly growing and exciting field of research.Download high-res image (164KB)Download full-size image
Co-reporter:Jos C. M. Kistemaker;Mu-Chieh Chang;Peter Štacko;Edwin Otten;Thomas van Leeuwen
Science 2017 Volume 356(Issue 6341) pp:
Publication Date(Web):
DOI:10.1126/science.aam8808
Light-driven rotation of two components in a molecular motor couples synchronously with the motion of a third component.
Co-reporter:Adele Faulkner, Thomas van Leeuwen, Ben L. Feringa, and Sander J. Wezenberg
Journal of the American Chemical Society 2016 Volume 138(Issue 41) pp:13597-13603
Publication Date(Web):September 26, 2016
DOI:10.1021/jacs.6b06467
The rotational speed of an overcrowded alkene-based molecular rotary motor, having an integrated 4,5-diazafluorenyl coordination motif, can be regulated allosterically via the binding of metal ions. DFT calculations have been used to predict the relative speed of rotation of three different (i.e., zinc, palladium, and platinum) metal dichloride complexes. The photochemical and thermal isomerization behavior of these complexes has been studied in detail using UV–vis and 1H NMR spectroscopy. Our results confirm that metal coordination induces a contraction of the diazafluorenyl lower half, resulting in a reduction of the steric hindrance in the “fjord” region of the molecule, which causes an increase of the rotational speed. Importantly, metal complexation can be accomplished in situ and is found to be reversible upon the addition of a competing ligand. Consequently, the rotational behavior of these molecular motors can be dynamically controlled with chemical additives.
Co-reporter:Michael M. Lerch; Sander J. Wezenberg; Wiktor Szymanski
Journal of the American Chemical Society 2016 Volume 138(Issue 20) pp:6344-6347
Publication Date(Web):May 6, 2016
DOI:10.1021/jacs.6b01722
Molecular photoswitches have opened up a myriad of opportunities in applications ranging from responsive materials and control of biological function to molecular logics. Here, we show that the photoswitching mechanism of donor–acceptor Stenhouse adducts (DASA), a recently reported class of photoswitches, proceeds by photoinduced Z–E isomerization, followed by a thermal, conrotatory 4π-electrocyclization. The photogenerated intermediate is manifested by a bathochromically shifted band in the visible absorption spectrum of the DASA. The identification of the role of this intermediate reveals a key step in the photoswitching mechanism that is essential to the rational design of switching properties via structural modification.
Co-reporter:Sander J. Wezenberg, Christelle M. Croisetu, Marc C. A. Stuart and Ben L. Feringa
Chemical Science 2016 vol. 7(Issue 7) pp:4341-4346
Publication Date(Web):22 Mar 2016
DOI:10.1039/C6SC00659K
A new type of low-molecular-weight gelator (LMWG), i.e. overcrowded alkene-based bis-ureas, can be switched effectively between cis and trans isomers using light as demonstrated by 1H NMR and UV-Vis spectroscopy. Gelation studies reveal that one of the synthesized trans compounds forms stable gels in aromatic hydrocarbon solvents down to a critical concentration of 0.4 mg mL−1. Transmission electron microscopy (TEM) shows that this gel consists of an entangled fibrous network. For the trans isomer of this LMWG intermolecular urea hydrogen bonding is observed in the solid state, whereas density functional theory (DFT) geometry optimization of the cis isomer indicates the possible formation of an intramolecular hydrogen bond. Irradiation of the gel triggers trans-to-cis isomerization and consequently, a gel–sol phase transition. This process can be fully reversed by altering the irradiation wavelength.
Co-reporter:Sureshbabu Guduguntla, Jean-Baptiste Gualtierotti, Shermin S. Goh, and Ben L. Feringa
ACS Catalysis 2016 Volume 6(Issue 10) pp:6591
Publication Date(Web):August 22, 2016
DOI:10.1021/acscatal.6b01681
The highly enantioselective copper(I)/N-heterocyclic carbene (NHC) catalyzed synthesis of di- and triarylated all-carbon quaternary stereocenters via asymmetric allylic arylation (AAAr) with aryl organolithium compounds is demonstrated. The use of readily available or easily accessible aryl organolithium reagents in combination with trisubstituted allyl bromides, in the presence of a copper/NHC catalyst, affords important di- and triarylated all-carbon quaternary stereocenters in good yields and enantioselectivities. This method tolerates a wide range of alkyl and substituted aryl groups in the starting allyl bromides, including less common biaryl moieties, which, in combination with diverse organolithium reagents, delivers a broad scope of products in an operationally straightforward and efficient manner.Keywords: allylic substitution; copper; enantioselective; N-heterocyclic carbene; organolithium; quaternary stereocenter; triarylmethane
Co-reporter:Alexander T. Wolters, Valentin Hornillos, Dorus Heijnen, Massimo Giannerini, and Ben L. Feringa
ACS Catalysis 2016 Volume 6(Issue 4) pp:2622
Publication Date(Web):March 7, 2016
DOI:10.1021/acscatal.6b00134
An efficient, in situ sequential 1,2-addition of alkyllithium reagents to benzamides followed by α-arylation of the resulting alkyl ketones is reported. The use of Pd[P(t-Bu)3]2, as catalyst for the α-arylation reaction, allows access to a wide variety of functionalized benzyl ketones in a modular way. The decomposition of the tetrahedral intermediate originated from the 1,2-addition liberates in situ a lithium amide, therefore avoiding the need of an external base for the α-arylation. The method affords good overall yields with a variety of alkyl lithium reagents, benzamides, and aryl bromides, bearing a range of functional groups with complete selectivity toward the monoarylated products.Keywords: amides; ketones; one-pot; organolithium; palladium; α-arylation
Co-reporter:Sureshbabu Guduguntla; Valentín Hornillos; Romain Tessier; Martín Fañanás-Mastral
Organic Letters 2016 Volume 18(Issue 2) pp:252-255
Publication Date(Web):December 23, 2015
DOI:10.1021/acs.orglett.5b03396
A highly enantioselective copper/N-heterocyclic carbene catalyzed allylic arylation with organolithium compounds is presented. The use of commercial or readily prepared aryllithium reagents in the reaction with allyl bromides affords a variety of chiral diarylvinylmethanes, comprising a privileged structural motif in pharmaceuticals, in high yields with good to excellent regio- and enantioselectivities. The versatility of this new transformation is illustrated in the formal synthesis of the marketed drug tolterodine (Detrol).
Co-reporter:M. Giannerini, C. Vila, V. Hornillos and B. L. Feringa
Chemical Communications 2016 vol. 52(Issue 6) pp:1206-1209
Publication Date(Web):17 Nov 2015
DOI:10.1039/C5CC08507A
An efficient sequential 1,2-addition/cross-coupling of Weinreb amides with two organolithium reagents is reported. This synthetic approach allows access to a wide variety of functionalized ketones in a modular way. The one-pot procedure presented here takes advantage of a kinetically stable tetrahedral Weinreb intermediate during subsequent Pd-catalyzed cross-coupling with the second organolithium reagent leading, within short reaction times and under mild conditions, to the formation of ketones in excellent overall yields.
Co-reporter:Jiawen Chen, Sander J. Wezenberg and Ben L. Feringa
Chemical Communications 2016 vol. 52(Issue 41) pp:6765-6768
Publication Date(Web):05 Apr 2016
DOI:10.1039/C6CC02382G
An intramolecular cargo transport device, based on a light-driven molecular motor, is presented. Detailed UV-vis and 1H NMR studies demonstrate that the gripper attached to the upper half of the molecular motor is able to pick up an acetyl group from one side of the lower stator and, after a photochemical Z–E isomerization, drop it on the opposite side.
Co-reporter:Matea Vlatkovi&x107;;Dr. Ben L. Feringa;Dr. Ser J. Wezenberg
Angewandte Chemie International Edition 2016 Volume 55( Issue 3) pp:1001-1004
Publication Date(Web):
DOI:10.1002/anie.201509479
Abstract
A chiral bisurea anion receptor, derived from a first-generation molecular motor, can undergo photochemical and thermal isomerization operating as a reconfigurable system. The two possible cis configurations in the isomerization cycle are opposite in helicity, as is shown by CD spectroscopy. 1H NMR titrations demonstrate that the P and M helical cis isomers hold opposite enantioselectivity in the binding of binol phosphate, while anion complexation by the intermediate trans isomer is not selective. The difference in the binding affinity of the enantiomers was rationalized by DFT calculations, revealing very distinct binding modes. Thus, the enantiopreferred substrate binding in this receptor can be inverted in a dynamic fashion using light and heat.
Co-reporter:Thomas vanLeeuwen;Jefri Gan;Jos C. M. Kistemaker;Stefano F. Pizzolato;Dr. Mu-Chieh Chang ;Dr. Ben L. Feringa
Chemistry - A European Journal 2016 Volume 22( Issue 21) pp:7054-7058
Publication Date(Web):
DOI:10.1002/chem.201600628
Abstract
Molecular switches, rotors, and motors play an important role in the development of nano-machines and devices, as well as responsive and adaptive functional materials. For unidirectional rotors based on chiral overcrowded alkenes, their stereochemical homogeneity is of crucial importance. Herein, a method to obtain new and functionalizable overcrowded alkenes in enantiopure form is presented. The procedure involves a short synthesis of three steps and a solvent-switchable chiral resolution by using a readily available resolving agent. X-ray crystallography revealed the mode of binding of the motor with the resolving agent, as well as the absolute configuration of the motor. 1H NMR and UV/Vis spectroscopy techniques were used to determine the dynamic behavior of this molecular motor. This method provides rapid access to ample amounts of enantiopure molecular motors, which will greatly facilitate the further development of responsive molecular systems based on chiral overcrowded alkenes.
Co-reporter:Jos C. M. Kistemaker;Anouk S. Lubbe;Dr. Erik A. Bloemsma ;Dr. Ben L. Feringa
ChemPhysChem 2016 Volume 17( Issue 12) pp:1819-1822
Publication Date(Web):
DOI:10.1002/cphc.201501177
Abstract
Transition-state theory allows for the characterization of kinetic processes in terms of enthalpy and entropy of activation by using the Eyring equation. However, for reactions in solution, it fails to take the change of viscosity of solvents with temperature into account. A second-generation unidirectional rotary molecular motor was used as a probe to study the effects of temperature-dependent viscosity changes upon unimolecular thermal isomerization processes. By combining the free-volume model with transition-state theory, a modified version of the Eyring equation was derived, in which the rate is expressed in terms of both temperature and viscosity.
Co-reporter:Matea Vlatkovi&x107;;Dr. Ben L. Feringa;Dr. Ser J. Wezenberg
Angewandte Chemie 2016 Volume 128( Issue 3) pp:1013-1016
Publication Date(Web):
DOI:10.1002/ange.201509479
Abstract
A chiral bisurea anion receptor, derived from a first-generation molecular motor, can undergo photochemical and thermal isomerization operating as a reconfigurable system. The two possible cis configurations in the isomerization cycle are opposite in helicity, as is shown by CD spectroscopy. 1H NMR titrations demonstrate that the P and M helical cis isomers hold opposite enantioselectivity in the binding of binol phosphate, while anion complexation by the intermediate trans isomer is not selective. The difference in the binding affinity of the enantiomers was rationalized by DFT calculations, revealing very distinct binding modes. Thus, the enantiopreferred substrate binding in this receptor can be inverted in a dynamic fashion using light and heat.
Co-reporter:Mickel J. Hansen, Willem A. Velema, Michael M. Lerch, Wiktor Szymanski and Ben L. Feringa
Chemical Society Reviews 2015 vol. 44(Issue 11) pp:3358-3377
Publication Date(Web):28 Apr 2015
DOI:10.1039/C5CS00118H
Photocleavable protecting groups (PPGs) are extensively used in chemical and biological sciences. In their application, advantage is taken of using light as an external, non-invasive stimulus, which can be delivered with very high spatiotemporal precision. More recently, orthogonally addressing multiple PPGs, in a single system and with different wavelengths of light, has been explored. This approach allows one to independently control multiple functionalities in an external, non-invasive fashion. In this tutorial review, we discuss the design principles for dynamic systems involving wavelength-selective deprotection, focusing on the choice and optimization of PPGs, synthetic methods for their introduction and strategies for combining multiple PPGs into one system. Finally, we illustrate the design principles with representative examples, aiming at providing the reader with an instructive overview on how the wavelength-selective cleavage of photoprotecting groups can be applied in materials science, organic synthesis and biological systems.
Co-reporter:Derk Jan van Dijken; Jiawen Chen; Marc C. A. Stuart; Lili Hou
Journal of the American Chemical Society 2015 Volume 138(Issue 2) pp:660-669
Publication Date(Web):December 23, 2015
DOI:10.1021/jacs.5b11318
The novel concept of amphiphilic molecular motors that self-assemble into responsive supramolecular nanotubes in water is presented. The dynamic function of the molecular motor units inside the supramolecular assemblies was studied using UV–vis absorption spectroscopy and cryo-transmission electron microscopy (cryo-TEM) microscopy. Reorganization between distinct, well-defined nanotubes and vesicles can be reversibly induced by light, going through the rotation cycle of the motor, i.e. driven by alternate photochemical and thermal isomerization steps in the system. This is the first example in which a molecular rotary motor shows self-assembly in an aqueous medium with full retention of its functionality, paving the way to increasingly complex, highly dynamic artificial nanosystems in water.
Co-reporter:Valentín Hornillos, Massimo Giannerini, Carlos Vila, Martín Fañanás-Mastral and Ben L. Feringa
Chemical Science 2015 vol. 6(Issue 2) pp:1394-1398
Publication Date(Web):28 Nov 2014
DOI:10.1039/C4SC03117B
A catalytic method for the direct cross-coupling of alkenyllithium reagents with aryl and alkenyl halides is described. The use of a catalyst comprising Pd2(dba)3/XPhos allows for the stereoselective preparation of a wide variety of substituted alkenes in high yields under mild conditions. In addition (1-ethoxyvinyl)lithium can be efficiently converted into substituted vinyl ethers which, after hydrolysis, give readily access to the corresponding methyl ketones in a one pot procedure.
Co-reporter:J. P. Van der Berg, W. A. Velema, W. Szymanski, A. J. M. Driessen and B. L. Feringa
Chemical Science 2015 vol. 6(Issue 6) pp:3593-3598
Publication Date(Web):27 Apr 2015
DOI:10.1039/C5SC00215J
Bacteria use a communication system, called quorum sensing (QS), to organize into communities and synchronize gene expression to promote virulence and secure survival. Here we report on a proof-of-principle for externally interfering with this bacterial communication system, using light. By employing photoswitchable small molecules, we were able to photocontrol the QS-related bioluminescence in an Escherichia coli reporter strain, and the expression of target QS genes and pyocyanin production in Pseudomonas aeruginosa.
Co-reporter:Claudia Poloni, Marc C. A. Stuart, Pieter van der Meulen, Wiktor Szymanski and Ben L. Feringa
Chemical Science 2015 vol. 6(Issue 12) pp:7311-7318
Publication Date(Web):23 Sep 2015
DOI:10.1039/C5SC02735G
The external photocontrol over peptide folding, by the incorporation of molecular photoswitches into their structure, provides a powerful tool to study biological processes. However, it is limited so far to switches that exhibit only a rather limited geometrical change upon photoisomerization and that show thermal instability of the photoisomer. Here we describe the use of an overcrowded alkene photoswitch to control a model β-hairpin peptide. This photoresponsive unit undergoes a large conformational change and has two thermally stable isomers which has major influence on the secondary structure and the aggregation of the peptide, permitting the phototriggered formation of amyloid-like fibrils.
Co-reporter:Tim den Hartog, Yange Huang, Martín Fañanás-Mastral, Anne Meuwese, Alena Rudolph, Manuel Pérez, Adriaan J. Minnaard, and Ben L. Feringa
ACS Catalysis 2015 Volume 5(Issue 2) pp:560
Publication Date(Web):December 22, 2014
DOI:10.1021/cs501297s
The enantioselective 1,6-addition to unsaturated carbonyl compounds offers unique opportunities to study the range of selectivities one can obtain using Cu catalysis. Here, a substrate–reagent approach to obtain structural information on the mechanism of extended conjugate additions is reported. By studying the influence of several halides in the Grignard reagent and in the Cu source on the enantioselective 1,6-addition, it was shown that it is advantageous to use a combination of EtMgBr as Grignard reagent and CuI as Cu source. Furthermore, exploring substrates bearing several alkyl esters revealed that tBu-ester substrates enhance the enantiodiscrimination in the 1,6-addition and allow the addition of BnCH2MgBr. Substrates with a variety of electron-withdrawing groups were investigated as well, identifying that ester substrates are optimal for the 1,6-addition. Two other investigations feature Me-substituted olefin substrates and substrates with all possible olefin geometries. These studies show unprecedented high enantioselectivity in the 1,6-addition when α-Me substrates are used and give relevant insight into the 1,6-addition mechanism. Finally, substrates with three or four olefins in conjugation with the electron-withdrawing groups were studied. Here, a 1,8-addition is reported that gives the corresponding products in reasonable yield, regio- and stereoselectivity. With the combined results of these studies, elucidating key substrate and reagent parameters, an adapted mechanism for the enantioselective 1,6-addition is proposed. This mechanism features the activation of a dimeric precatalyst by an equivalent of Grignard reagent, active catalyst coordination to the internal olefin of the substrate in a CuI-π-complex, followed by coordination of the catalyst to the remote olefin forming another CuI-π-complex. From the latter CuI-complex, an oxidative addition gives a CuIII-σ-complex at the δ-carbon, followed by transfer of the alkyl moiety to the δ-position. This reductive elimination yields the product and reforms the active CuI catalyst via transmetalation with another molecule of Grignard reagent.Keywords: asymmetric catalysis; copper; extended conjugate addition; Grignard reagent; mechanism
Co-reporter:Dorus Heijnen, Valentín Hornillos, Brian P. Corbet, Massimo Giannerini, and Ben L. Feringa
Organic Letters 2015 Volume 17(Issue 9) pp:2262-2265
Publication Date(Web):April 14, 2015
DOI:10.1021/acs.orglett.5b00905
The palladium-catalyzed direct cross-coupling of a range of organic chlorides and bromides with the bifunctional C(sp3)-(trimethylsilyl)methyllithium reagent is reported. The use of Pd-PEPPSI-IPent as the catalyst allows for the preparation of structurally diverse and synthetically versatile benzyl- and allylsilanes in high yields under mild conditions (room temperature) with short reaction times.
Co-reporter:Stefano F. Pizzolato, Massimo Giannerini, Pieter H. Bos, Martín Fañanás-Mastral and Ben L. Feringa
Chemical Communications 2015 vol. 51(Issue 38) pp:8142-8145
Publication Date(Web):09 Apr 2015
DOI:10.1039/C5CC01521A
An efficient and highly α-selective copper-catalyzed allylic alkylation of allylic halides with organolithium reagents is presented. The use of N-heterocyclic carbenes as ligands is key to reverse the common γ-selectivity of this transformation and gives rise to the corresponding linear products with high levels of regioselectivity.
Co-reporter:Luis M. Castelló, Valentín Hornillos, Carlos Vila, Massimo Giannerini, Martín Fañanás-Mastral, and Ben L. Feringa
Organic Letters 2015 Volume 17(Issue 1) pp:62-65
Publication Date(Web):December 16, 2014
DOI:10.1021/ol5032409
Palladium-catalyzed cross-coupling of aryllithium reagents with 2-alkoxy-substituted aryl chlorides is described. The reactions proceed under mild conditions with short reaction times and provide a wide range of 2-alkoxy-substituted biaryls. This new methodology is applied to the efficient preparation of 3,3′-diaryl BINOLs and represents the first synthesis of this important class of chiral compounds from the corresponding 3,3′-dichloro BINOLs.
Co-reporter:Willem A. Velema, Mickel J. Hansen, Michael M. Lerch, Arnold J. M. Driessen, Wiktor Szymanski, and Ben L. Feringa
Bioconjugate Chemistry 2015 Volume 26(Issue 12) pp:2592
Publication Date(Web):November 17, 2015
DOI:10.1021/acs.bioconjchem.5b00591
Photopharmacology aims to locally treat diseases and study biological processes with photoresponsive drugs. Herein, easy access to photoswitchable drugs is crucial, which is supported by simple and robust drug modifications. We investigated the possibility of creating drugs that can undergo remote activation and deactivation with light, by conjugating molecular photoswitches to the exterior of an existing drug in a single chemical step. This facile strategy allows the convenient introduction of various photochromic systems into a drug molecule, rendering it photoresponsive. To demonstrate the feasibility of this approach, two photoswitch-modified ciprofloxacin antibiotics were synthesized. Remarkably, for one of them a 50-fold increase in activity compared to the original ciprofloxacin was observed. Their antimicrobial activity could be spatiotemporally controlled with light, which was exemplified by bacterial patterning studies.
Co-reporter:Thomas C. Pijper, Jort Robertus, Wesley R. Browne and Ben L. Feringa
Organic & Biomolecular Chemistry 2015 vol. 13(Issue 1) pp:265-268
Publication Date(Web):2014/11/06
DOI:10.1039/C4OB02120G
We report a straightforward method for the rapid conversion of thio-ethers to thio-acetates using TiCl4, in good to excellent yields. The reaction conditions tolerate a variety of functional groups, including halide, nitro, ether, thiophene and acetylene functionalities. A catalytic variant of this reaction is also described.
Co-reporter:Willem A. Velema, Jan Pieter van der Berg, Wiktor Szymanski, Arnold J. M. Driessen and Ben L. Feringa
Organic & Biomolecular Chemistry 2015 vol. 13(Issue 6) pp:1639-1642
Publication Date(Web):10 Dec 2014
DOI:10.1039/C4OB02483D
Patterning of multiple bacterial strains in one system is achieved by employing a single photo-activated antibiotic. Varying the light-exposure time results in zones with mixed and single populations.
Co-reporter:Thomas C. Pijper
The Journal of Physical Chemistry C 2015 Volume 119(Issue 7) pp:3648-3657
Publication Date(Web):January 22, 2015
DOI:10.1021/jp512424d
Co-reporter:Dr. Carlos Vila;Sara Cembellín;Dr. Valentín Hornillos;Massimo Giannerini;Dr. Martín Fañanás-Mastral;Dr. Ben L. Feringa
Chemistry - A European Journal 2015 Volume 21( Issue 44) pp:15520-15524
Publication Date(Web):
DOI:10.1002/chem.201502709
Abstract
A Pd-catalyzed direct cross-coupling of two distinct aryl bromides mediated by tBuLi is described. The use of [Pd-PEPPSI-IPr] or [Pd-PEPPSI-IPent] as catalyst allows for the efficient one-pot synthesis of unsymmetrical biaryls at room temperature. The key for this selective cross-coupling is the use of an ortho-substituted bromide that undergoes lithium–halogen exchange preferentially.
Co-reporter:Nathalie C. van der Molen, Theodora D. Tiemersma-Wegman, Martín Fañanás-Mastral, and Ben L. Feringa
The Journal of Organic Chemistry 2015 Volume 80(Issue 10) pp:4981-4984
Publication Date(Web):April 22, 2015
DOI:10.1021/acs.joc.5b00371
A highly efficient method for the copper-catalyzed asymmetric allylic alkylation of ortho-substituted cinnamyl bromides with Grignard reagents is reported. The use of a catalytic system comprising CuBr·SMe2 and TaniaPhos as chiral ligands gives rise to a range of branched products with excellent regio- and enantioselectivity.
Co-reporter:Petra M. Erne;Laura S. vanBezouwen;Peter &x160;tacko;Dr. Derk Jan vanDijken;Dr. Jiawen Chen;Dr. Marc C. A. Stuart;Dr. Egbert J. Boekema;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2015 Volume 54( Issue 50) pp:15122-15127
Publication Date(Web):
DOI:10.1002/anie.201506493
Abstract
The facile assembly of higher-order nanoarchitectures from simple building blocks is demonstrated by the loading of vesicles into soft amphiphilic nanotubes using osmosis. The nanotubes are constructed from rigid interdigitated bilayers which are capped with vesicles comprising phospholipid-based flexible bilayers. When a hyperosmotic gradient is applied to these vesicle-capped nanotubes, the closed system loses water and the more flexible vesicle bilayer is pulled inwards. This leads to inclusion of vesicles inside the nanotubes without affecting the tube structure, showing controlled reorganization of the self-assembled multicomponent system upon a simple osmotic stimulus.
Co-reporter:Jia Jia Dong;Dr. Wesley R. Browne;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2015 Volume 54( Issue 3) pp:734-744
Publication Date(Web):
DOI:10.1002/anie.201404856
Abstract
The palladium-catalyzed oxidation of alkenes, the Wacker–Tsuji reaction, is undoubtedly a classic in organic synthesis and provides reliable access to methyl ketones from terminal alkenes under mild reaction conditions. Methods that switch the selectivity of the reaction to provide the aldehyde product are desirable because of the access they provide to a valuable functional group, however such methods are elusive. Herein we survey both the methods which have been developed recently in achieving such selectivity and discuss common features and mechanistic insight which offers promise in achieving the goal of a general method for anti-Markovnikov-selective olefin oxidations.
Co-reporter:Petra M. Erne;Laura S. vanBezouwen;Peter &x160;tacko;Dr. Derk Jan vanDijken;Dr. Jiawen Chen;Dr. Marc C. A. Stuart;Dr. Egbert J. Boekema;Dr. Ben L. Feringa
Angewandte Chemie 2015 Volume 127( Issue 50) pp:15337-15342
Publication Date(Web):
DOI:10.1002/ange.201506493
Abstract
The facile assembly of higher-order nanoarchitectures from simple building blocks is demonstrated by the loading of vesicles into soft amphiphilic nanotubes using osmosis. The nanotubes are constructed from rigid interdigitated bilayers which are capped with vesicles comprising phospholipid-based flexible bilayers. When a hyperosmotic gradient is applied to these vesicle-capped nanotubes, the closed system loses water and the more flexible vesicle bilayer is pulled inwards. This leads to inclusion of vesicles inside the nanotubes without affecting the tube structure, showing controlled reorganization of the self-assembled multicomponent system upon a simple osmotic stimulus.
Co-reporter:Dr. Martín Fañanás-Mastral;Dr. Romina Vitale;Dr. Manuel Pérez;Dr. Ben L. Feringa
Chemistry - A European Journal 2015 Volume 21( Issue 11) pp:4209-4212
Publication Date(Web):
DOI:10.1002/chem.201406006
Abstract
A copper/phosphoramidite catalyzed asymmetric allylic alkylation of Z trisubstituted allyl bromides with organolithium reagents is reported. The reaction affords all-carbon quaternary stereogenic centers in high yields and very good regio- and enantioselectivity. This systematic study illustrates the crucial role of the olefin geometry of the allyl substrate on the outcome of the reaction and provides a viable alternative to access these important structural motifs.
Co-reporter:Willem A. Velema ; Wiktor Szymanski
Journal of the American Chemical Society 2014 Volume 136(Issue 6) pp:2178-2191
Publication Date(Web):January 23, 2014
DOI:10.1021/ja413063e
Pharmacotherapy is often severely hindered by issues related to poor drug selectivity, including side effects, environmental toxicity, and the emergence of resistance. Lack of selectivity is caused by the inability to control drug activity in time and space. Photopharmacology aims at solving this issue by incorporating photoswitchable groups into the molecular structure of bioactive compounds. These switching units allow for the use of light as an external control element for pharmacological activity, which can be delivered with very high spatiotemporal precision. This Perspective presents the reader with the current state and outlook on photopharmacology. In particular, the principles behind photoregulation of bioactivity, the challenges of molecular design, and the possible therapeutic scenarios are discussed.
Co-reporter:Jiawen Chen ; Jos C. M. Kistemaker ; Jort Robertus
Journal of the American Chemical Society 2014 Volume 136(Issue 42) pp:14924-14932
Publication Date(Web):September 25, 2014
DOI:10.1021/ja507711h
A series of first-generation light-driven molecular motors with rigid substituents of varying length was synthesized to act as “molecular stirrers”. Their rotary motion was studied by 1H NMR and UV–vis absorption spectroscopy in a variety of solvents with different polarity and viscosity. Quantitative analyses of kinetic and thermodynamic parameters show that the rotary speed is affected by the rigidity of the substituents and the length of the rigid substituents and that the differences in speed are governed by entropy effects. Most pronounced is the effect of solvent viscosity on the rotary motion when long, rigid substituents are present. The α values obtained by the free volume model, supported by DFT calculations, demonstrate that during the rotary process of the motor, as the rigid substituent becomes longer, an increased rearranging volume is needed, which leads to enhanced solvent displacement and retardation of the motor.
Co-reporter:Martín Fañanás-Mastral
Journal of the American Chemical Society 2014 Volume 136(Issue 28) pp:9894-9897
Publication Date(Web):June 24, 2014
DOI:10.1021/ja505281v
Copper-catalysis allows the direct oxygen-arylation of dialkyl phosphonates with diaryliodonium salts. This novel methodology proceeds with a wide range of phosphonates and phosphoramidates under mild conditions and gives straightforward access to valuable mixed alkyl aryl phosphonates in very good yields and near perfect selectivity.
Co-reporter:Jia Jia Dong ; Emma C. Harvey ; Martín Fañanás-Mastral ; Wesley R. Browne
Journal of the American Chemical Society 2014 Volume 136(Issue 49) pp:17302-17307
Publication Date(Web):November 10, 2014
DOI:10.1021/ja510163w
A general method for the preparation of N-protected β-amino aldehydes from allylic amines or linear allylic alcohols is described. Here the Pd(II)-catalyzed oxidation of N-protected allylic amines with benzoquinone is achieved in tBuOH under ambient conditions with excellent selectivity toward the anti-Markovnikov aldehyde products and full retention of configuration at the allylic carbon. The method shows a wide substrate scope and is tolerant of a range of protecting groups. Furthermore, β-amino aldehydes can be obtained directly from protected allylic alcohols via palladium-catalyzed autotandem reactions, and the application of this method to the synthesis of β-peptide aldehydes is described. From a mechanistic perspective, we demonstrate that tBuOH acts as a nucleophile in the reaction and that the initially formed tert-butyl ether undergoes spontaneous loss of isobutene to yield the aldehyde product. Furthermore, tBuOH can be used stoichiometrically, thereby broadening the solvent scope of the reaction. Primary and secondary alcohols do not undergo elimination, allowing the isolation of acetals, which subsequently can be hydrolyzed to their corresponding aldehyde products.
Co-reporter:Sander J. Wezenberg ; Matea Vlatković ; Jos C. M. Kistemaker
Journal of the American Chemical Society 2014 Volume 136(Issue 48) pp:16784-16787
Publication Date(Web):November 17, 2014
DOI:10.1021/ja510700j
A responsive bis-urea receptor can be switched between three isomers using light and heat as evidenced by 1H NMR and UV–vis spectroscopy. Anion binding experiments (1H NMR titrations, ESI-MS) reveal a high selectivity for dihydrogen phosphate. Importantly, a large difference in binding affinity to the interchangeable isomers is observed, which is further rationalized by DFT calculations. As a consequence, the amount of bound substrate can be controlled via photo- and thermal isomerization in a three-step process.
Co-reporter:Kuang-Yen Chen ; Oleksii Ivashenko ; Gregory T. Carroll ; Jort Robertus ; Jos C. M. Kistemaker ; Gábor London ; Wesley R. Browne ; Petra Rudolf
Journal of the American Chemical Society 2014 Volume 136(Issue 8) pp:3219-3224
Publication Date(Web):February 3, 2014
DOI:10.1021/ja412110t
Monolayers of fluorinated light-driven molecular motors were synthesized and immobilized on gold films in an altitudinal orientation via tripodal stators. In this design the functionalized molecular motors are not interfering and preserve their rotary function on gold. The wettability of the self-assembled monolayers can be modulated by UV irradiation.
Co-reporter:Lili Hou ; Xiaoyan Zhang ; Thomas C. Pijper ; Wesley R. Browne
Journal of the American Chemical Society 2014 Volume 136(Issue 3) pp:910-913
Publication Date(Web):January 6, 2014
DOI:10.1021/ja4122473
Reversible noninvasive control over the generation of singlet oxygen is demonstrated in a bicomponent system comprising a diarylethene photochromic switch and a porphyrin photosensitizer by selective irradiation at distinct wavelengths. The efficient generation of singlet oxygen by the photosensitizer is observed when the diarylethene unit is in the colorless open form. Singlet oxygen generation is not observed when the diarylethene is converted to the closed form. Irradiation of the closed form with visible light (>470 nm) leads to full recovery of the singlet oxygen generating ability of the porphyrin sensitizer.
Co-reporter:Carlos Vila, Massimo Giannerini, Valentín Hornillos, Martín Fañanás-Mastral and Ben L. Feringa
Chemical Science 2014 vol. 5(Issue 4) pp:1361-1367
Publication Date(Web):29 Nov 2013
DOI:10.1039/C3SC53047G
Palladium-catalysed cross-coupling of secondary C(sp3) organometallic reagents has been a long-standing challenge in organic synthesis, due to the problems associated with undesired isomerisation or the formation of reduction products. Based on our recently developed catalytic C–C bond formation with organolithium reagents, herein we present a Pd-catalysed cross-coupling of secondary alkyllithium reagents with aryl and alkenyl bromides. The reaction proceeds at room temperature and on short timescales with high selectivity and yields. This methodology is also applicable to hindered aryl bromides, which are a major challenge in the field of metal catalysed cross-coupling reactions.
Co-reporter:Depeng Zhao, Martín Fañanás-Mastral, Mu-Chieh Chang, Edwin Otten and Ben L. Feringa
Chemical Science 2014 vol. 5(Issue 11) pp:4216-4220
Publication Date(Web):21 Jul 2014
DOI:10.1039/C4SC01940G
Chiral N,O-heterocycles were synthesized in high yields and excellent enantioselectivity up to 97% ee via iridium-catalysed intramolecular allylic substitution with nucleophilic attack by the amide oxygen atom. The resulting benzoxazine derivatives were further transformed into challenging chiral N,O-ketals bearing both a tertiary and a quaternary center with excellent diastereoselectivities.
Co-reporter:Jiawen Chen, Emmanuelle Lacaze, Etienne Brasselet, Syuzanna R. Harutyunyan, Nathalie Katsonis and Ben L. Feringa
Journal of Materials Chemistry A 2014 vol. 2(Issue 38) pp:8137-8141
Publication Date(Web):26 Aug 2014
DOI:10.1039/C4TC01297F
We demonstrate the ultra-sensitive detection of molecular chirality experimentally, by investigating structural transitions in sessile droplets of cholesteric liquid crystals. By doping the liquid crystal with chiral molecular photo-switches, we demonstrate that both optical and structural transitions can be triggered by light, reversibly. Moreover, we show that depending on the initial confinement state of the cholesteric helix, the expression of chirality can be photo-switched on and off by means of an interplay between microscopic and geometric constraints.
Co-reporter:Thomas M. Neubauer, Thomas van Leeuwen, Depeng Zhao, Anouk S. Lubbe, Jos C. M. Kistemaker, and Ben L. Feringa
Organic Letters 2014 Volume 16(Issue 16) pp:4220-4223
Publication Date(Web):July 31, 2014
DOI:10.1021/ol501925f
A general enantioselective route to functionalized first generation molecular motors is described. An enantioselective protonation of the silyl enol ethers of indanones by a Au(I)BINAP complex sets the stage for a highly diastereoselective McMurry coupling as a second enhancement step for enantiomeric excess. In this way various functionalized overcrowded alkenes could be synthesized in good yields (up to 78%) and good to excellent enantiomeric excess (85% ee–>98% ee) values.
Co-reporter:Jiawen Chen, Kuang-Yen Chen, Gregory T. Carroll and Ben L. Feringa
Chemical Communications 2014 vol. 50(Issue 84) pp:12641-12644
Publication Date(Web):02 Sep 2014
DOI:10.1039/C4CC04440A
In order to improve the rotary motion of surface assembled light-driven molecular motors, tetra-acid-functionalized motors were bound to an amine-coated quartz surface without prior activation of the acid groups. In contrast to earlier bipodal motors, the tetravalent motor showed no significant reduction in the rotation speed when attached to a surface.
Co-reporter:Claudia Poloni, Wiktor Szymanski and Ben L. Feringa
Chemical Communications 2014 vol. 50(Issue 84) pp:12645-12648
Publication Date(Web):02 Sep 2014
DOI:10.1039/C4CC06087C
Lipase from Candida rugosa was immobilised on a quartz surface using an azobenzene-containing, bifunctional linker, which allows deactivation of the immobilised enzyme by irradiation with visible light.
Co-reporter:Matea Vlatković, Luca Bernardi, Edwin Otten and Ben L. Feringa
Chemical Communications 2014 vol. 50(Issue 58) pp:7773-7775
Publication Date(Web):07 Mar 2014
DOI:10.1039/C4CC00794H
Here we present a novel dynamic organocatalyst, based on a first-generation molecular motor core, able to control the stereochemical outcome of the Henry reaction using both light and heat as external stimuli.
Co-reporter:Willem A. Velema, Jan Pieter van der Berg, Wiktor Szymanski, Arnold J. M. Driessen, and Ben L. Feringa
ACS Chemical Biology 2014 Volume 9(Issue 9) pp:1969
Publication Date(Web):July 23, 2014
DOI:10.1021/cb500313f
Selection of a single bacterial strain out of a mixture of microorganisms is of crucial importance in healthcare and microbiology research. Novel approaches that can externally control bacterial selection are a valuable addition to the microbiology toolbox. In this proof-of-concept, two complementary antibiotics are protected with photocleavable groups that can be orthogonally addressed with different wavelengths of light. This allows for the light-triggered selection of a single bacterial strain out of a mixture of multiple strains, by choosing the right wavelength. Further improvement toward additional orthogonally addressable antibiotics might ultimately lead to a novel methodology for bacterial selection in complex populations.
Co-reporter:Carlos Vila, Valentín Hornillos, Martín Fañanás-Mastral and Ben L. Feringa
Organic & Biomolecular Chemistry 2014 vol. 12(Issue 46) pp:9321-9323
Publication Date(Web):13 Oct 2014
DOI:10.1039/C4OB01896F
2-Allyl-substituted thiophenes and furans are synthesised efficiently in a direct procedure using 2-heteroaryllithium reagents and allyl bromides and chlorides catalysed by ligand-free copper(I). The reactions take place under mild conditions, with excellent α-selectivity, high functional group tolerance and good yields for the SN2 products.
Co-reporter:Anne K. Schoonen, M. Ángeles Fernández-Ibáñez, Martín Fañanás-Mastral, Johannes F. Teichert and Ben L. Feringa
Organic & Biomolecular Chemistry 2014 vol. 12(Issue 1) pp:36-41
Publication Date(Web):29 Oct 2013
DOI:10.1039/C3OB41923A
A highly enantioselective one pot procedure for the synthesis of β-substituted amides was developed starting from the corresponding α,β-unsaturated esters. This new methodology is based on the copper-catalysed enantioselective conjugate addition of Grignard reagents to α,β-unsaturated esters and subsequent direct formation of amides by quenching the corresponding enolates with different amines. Various primary and secondary amines bearing alkyl or aryl substituents can be used giving rise to a large variety of β-substituted amides with excellent enantioselectivities.
Co-reporter:Jérôme Vachon, Gregory T. Carroll, Michael M. Pollard, Emile M. Mes, Albert M. Brouwer and Ben L. Feringa
Photochemical & Photobiological Sciences 2014 vol. 13(Issue 2) pp:241-246
Publication Date(Web):04 Oct 2013
DOI:10.1039/C3PP50208B
We report the synthesis and surface attachment of an ultrafast light-driven rotary molecular motor. Transient absorption spectroscopy revealed that the half-life of the rate determining thermal step of the rotary cycle in solution is 38 ± 1 ns, the shortest yet observed, making this the fastest molecular motor reported. Incorporation of acetylene legs into the structure allowed the motors to be grafted to azide-modified quartz and silicon substrates using the “click” 1,3-dipolar cycloaddition reaction.
Co-reporter:Dr. Carlos Vila;Dr. Valentín Hornillos;Massimo Giannerini;Dr. Martín Fañanás-Mastral ;Dr. Ben L. Feringa
Chemistry - A European Journal 2014 Volume 20( Issue 41) pp:
Publication Date(Web):
DOI:10.1002/chem.201484171
Co-reporter:Dr. Carlos Vila;Dr. Valentín Hornillos;Massimo Giannerini;Dr. Martín Fañanás-Mastral ;Dr. Ben L. Feringa
Chemistry - A European Journal 2014 Volume 20( Issue 41) pp:13078-13083
Publication Date(Web):
DOI:10.1002/chem.201404398
Abstract
A palladium-catalysed cross-coupling of organolithium reagents with aryl and vinyl triflates is presented. The reaction proceeds at 50 or 70 °C with short reaction times, and the corresponding products are obtained with moderate to high yields, with a variety of alkyl and (hetero)aryl lithium reagents.
Co-reporter:Jochem T. vanHerpt;Dr. Jetsuda Areephong;Dr. Marc C. A. Stuart;Dr. Wesley R. Browne;Dr. Ben L. Feringa
Chemistry - A European Journal 2014 Volume 20( Issue 6) pp:1737-1742
Publication Date(Web):
DOI:10.1002/chem.201302902
Abstract
A new responsive material composed of an amphiphilic light-switchable dithienylethene unit functionalized with a hydrophobic cholesterol unit and a hydrophilic poly(ethylene glycol)-modified pyridinium group has been designed. This unique single-molecule system shows responsive light-switchable self-assembly in both water and organic solvents. Light-triggered reversible vesicle formation in aqueous solutions is reported. The molecule shows a different behavior in apolar aromatic solvents, in which light-controlled formation of organogel fibers is observed. The light-triggered aggregation behavior of this molecule demonstrates that control of a supramolecular structure with light can be achieved in both aqueous and organic media and that this ability can be present in a single molecule. This opens the way toward the effective development of new strategies in soft nanotechnology for applications in controlled chemical release systems.
Co-reporter:Claudia Poloni;Dr. Wiktor Szyma&x144;ski;Dr. Lili Hou; Wesley R. Browne; Ben L. Feringa
Chemistry - A European Journal 2014 Volume 20( Issue 4) pp:946-951
Publication Date(Web):
DOI:10.1002/chem.201304129
Abstract
Azobenzenes have been used as photoresponsive units for the control of numerous biological processes. Primary prerequisites for such applications are site-selective incorporation of photoswitchable units into biomolecules and the possibility of using non-destructive and deep-tissue-penetrating visible light for the photoisomerization. Here we report a push–pull azobenzene that readily undergoes a Staudinger–Bertozzi ligation with azide groups, that can be addressed with visible light (>440 nm) and exhibits the solvato- and acidochromism typical for push–pull systems. The thermal relaxation in aqueous environment proceeds on the low-millisecond timescale, thus enabling control over biological processes on similar timescales. The approach is demonstrated in the modification of a quartz surface and in the incorporation of an azobenzene unit into a functional peptide, the third zinc finger in the mammalian factor Sp1.
Co-reporter:Dr. Wiktor Szyma&x144;ski;Willem A. Velema ;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2014 Volume 53( Issue 33) pp:8682-8686
Publication Date(Web):
DOI:10.1002/anie.201402665
Abstract
Photocaged compounds are important tools for studying and regulating multiple processes, including biological functions. Reported herein is the use of the Passerini multicomponent reaction for modular preparation of photocaged carboxylic acids. The reaction is compatible with several functionalities and proceeds smoothly both in water and dichloromethane. The choice of aldehyde determines the wavelength used for deprotection and enables formation of orthogonally protected products. The isocyanide component can be used for introduction of reactive tags and photosensitizers, as well as for immobilization on a solid support.
Co-reporter:Derk Jan vanDijken;Dr. John M. Beierle;Dr. Marc C. A. Stuart;Dr. Wiktor Szyma&x144;ski;Dr. Wesley R. Browne ;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2014 Volume 53( Issue 20) pp:5073-5077
Publication Date(Web):
DOI:10.1002/anie.201311160
Abstract
The novel concept for the autoamplification of molecular chirality, wherein the amplification proceeds through the induction of supramolecular chirality, is presented. A solution of prochiral, ring-open diarylethenes is doped with a small amount of their chiral, ring-closed counterpart. The molecules co-assemble into helical fibers through hydrogen bonding and the handedness of the fibers is biased by the chiral, ring-closed diarylethene. Photochemical ring closure of the open diarylethene yields the ring-closed product, which is enriched in the template enantiomer.
Co-reporter:Dr. Wiktor Szyma&x144;ski;Willem A. Velema ;Dr. Ben L. Feringa
Angewandte Chemie 2014 Volume 126( Issue 33) pp:8826-8830
Publication Date(Web):
DOI:10.1002/ange.201402665
Abstract
Photocaged compounds are important tools for studying and regulating multiple processes, including biological functions. Reported herein is the use of the Passerini multicomponent reaction for modular preparation of photocaged carboxylic acids. The reaction is compatible with several functionalities and proceeds smoothly both in water and dichloromethane. The choice of aldehyde determines the wavelength used for deprotection and enables formation of orthogonally protected products. The isocyanide component can be used for introduction of reactive tags and photosensitizers, as well as for immobilization on a solid support.
Co-reporter:Derk Jan vanDijken;Dr. John M. Beierle;Dr. Marc C. A. Stuart;Dr. Wiktor Szyma&x144;ski;Dr. Wesley R. Browne ;Dr. Ben L. Feringa
Angewandte Chemie 2014 Volume 126( Issue 20) pp:5173-5177
Publication Date(Web):
DOI:10.1002/ange.201311160
Abstract
The novel concept for the autoamplification of molecular chirality, wherein the amplification proceeds through the induction of supramolecular chirality, is presented. A solution of prochiral, ring-open diarylethenes is doped with a small amount of their chiral, ring-closed counterpart. The molecules co-assemble into helical fibers through hydrogen bonding and the handedness of the fibers is biased by the chiral, ring-closed diarylethene. Photochemical ring closure of the open diarylethene yields the ring-closed product, which is enriched in the template enantiomer.
Co-reporter:Dr. Jochem T. van Herpt;Dr. Marc C. A. Stuart;Dr. Wesley R. Browne;Dr. Ben L. Feringa
Chemistry - A European Journal 2014 Volume 20( Issue 11) pp:3077-3083
Publication Date(Web):
DOI:10.1002/chem.201304064
Abstract
Dithienylethene photochromic switching units have been incorporated into a hydrogelating system based on a tripeptide motif. The resulting hybrid system provided both a photochromic response and the ability to gelate water under acidic and neutral conditions. Fluorescence spectroscopy shows that the dithienylethene units are in sufficient proximity to each other to stack in gel fibers, with the tripeptide unit determining solubility. TEM measurements provided insight into the microscopic structure of the fibers formed.
Co-reporter:Kuang-Yen Chen, Sander J. Wezenberg, Gregory T. Carroll, Gábor London, Jos C. M. Kistemaker, Thomas C. Pijper, and Ben L. Feringa
The Journal of Organic Chemistry 2014 Volume 79(Issue 15) pp:7032-7040
Publication Date(Web):June 30, 2014
DOI:10.1021/jo501190f
The design, synthesis, and dynamic behavior of a series of novel tetrapodal molecular switches and motors containing common functional groups for attachment to various inorganic and organic surfaces are presented. Using a Diels–Alder reaction, an anthracene unit with four functionalized alkyl substituents (“legs”) was coupled to maleimide-functionalized molecular switches or motors under ambient conditions. Terminal functional groups at the “legs” include thioacetates and azides, making these switches and motors ideal candidates for attachment to metallic or alkyne-functionalized surfaces. UV/vis absorption spectroscopy shows that the molecular switches and motors retain their ability to undergo reversible photoinduced and/or thermally induced structural changes after attachment to the tetrapodal anthracene.
Co-reporter:Arjen Cnossen, Jos C. M. Kistemaker, Tatsuo Kojima, and Ben L. Feringa
The Journal of Organic Chemistry 2014 Volume 79(Issue 3) pp:927-935
Publication Date(Web):January 12, 2014
DOI:10.1021/jo402301j
Synthetic light-driven rotary molecular motors show complicated structural dynamics during the rotation process. A combination of DFT calculations and various spectroscopic techniques is employed to study the effect of the bridging group in the lower half of the molecule on the conformational dynamics. It was found that the extent to which the bridging group can accommodate the increased folding in the transition state is the main factor in rationalizing the differences in barrier height and, as a consequence, the rotary speed. These findings will be essential in designing future rotary molecular motors.
Co-reporter:Mickel J. Hansen;Willem A. Velema;Gerjan de Bruin; Herman S. Overkleeft;Dr. Wiktor Szymanski; Ben L. Feringa
ChemBioChem 2014 Volume 15( Issue 14) pp:2053-2057
Publication Date(Web):
DOI:10.1002/cbic.201402237
Abstract
Proteasome inhibitors are widely used in cancer treatment as chemotherapeutic agents. However, their employment often results in severe side effects, due to their non-specific cytotoxicity towards healthy tissue. This problem might be overcome by using a photopharmacological approach, that is, by attaining external, dynamic, spatiotemporal photocontrol over the activity of a cytotoxic agent, achieved by the introduction of a photoswitchable moiety into its molecular structure. Here we describe the design, synthesis, and activity of photoswitchable proteasome inhibitors. Substantial differences in proteasome inhibitory activity in cell extracts were observed before and after irradiation with light. The presented results show potential for the development of chemotherapeutic agents that can be switched on and off with light, constituting a new strategy for spatiotemporally modulating proteasomal activity.
Co-reporter:Mickel J. Hansen;Willem A. Velema;Gerjan de Bruin; Herman S. Overkleeft;Dr. Wiktor Szymanski; Ben L. Feringa
ChemBioChem 2014 Volume 15( Issue 14) pp:
Publication Date(Web):
DOI:10.1002/cbic.201490048
Co-reporter:Jurica Bauer, Lili Hou, Jos C. M. Kistemaker, and Ben L. Feringa
The Journal of Organic Chemistry 2014 Volume 79(Issue 10) pp:4446-4455
Publication Date(Web):April 15, 2014
DOI:10.1021/jo500411z
Overcrowded alkenes are among the most promising artificial molecular motors because of their ability to undergo repetitive light-driven unidirectional rotary motion around the central C═C bond. The exceptional features of these molecules render them highly useful for a number of applications in nanotechnology. Many of these applications, however, would benefit from higher rotation rates. To this end, a new molecular motor was designed, and the isomerization processes were studied in detail. The new motor comprises a fluorene lower half and a five-membered-ring upper half; the upper-half ring is fused to a p-xylyl moiety and bears a tert-butyl group at the stereogenic center. The kinetics of the thermal isomerization was studied by low-temperature UV–vis spectroscopy as well as by transient absorption spectroscopy at room temperature. These studies revealed that the tert-butyl and p-xylyl groups in the five-membered-ring upper half may be introduced simultaneously in the molecular design to achieve an acceleration of the rotation rate of the molecular motor that is larger than the acceleration obtained by using either one of the two groups individually. Furthermore, the new molecular motor retains unidirectional rotation while showing remarkably high photostationary states.
Co-reporter:Wiktor Szymański, John M. Beierle, Hans A. V. Kistemaker, Willem A. Velema, and Ben L. Feringa
Chemical Reviews 2013 Volume 113(Issue 8) pp:6114
Publication Date(Web):April 25, 2013
DOI:10.1021/cr300179f
Co-reporter:Wiktor SzymaŃski, Duygu Yilmaz, ArmaĞan Koçer, and Ben L. Feringa
Accounts of Chemical Research 2013 Volume 46(Issue 12) pp:2910
Publication Date(Web):April 18, 2013
DOI:10.1021/ar4000357
If we look at a simple organism such as a zebrafish under a microscope, we would see many cells working in harmony. If we zoomed in, we would observe each unit performing its own tasks in a special aqueous environment isolated from the other units by a lipid bilayer approximately 5 nm thick. These confined units are social: they communicate with one another by sensing and responding to the chemical changes in their environment through receptors and ion channels. These channels control the highly specific and selective passage of ions from one side of the cell to the other and are embedded in lipid bilayers. The movement of ions through ion channels supports excitation and electrical signaling in the nervous system.Ion channels have fascinated scientists not only because of their specificity and selectivity, but also for their functions, the serious consequences when they malfunction, and the other potential applications of these molecules. Light is a useful trigger to control and manipulate ion channels externally. With the many state-of-the-art optical technologies available, light offers a high degree of spatial and temporal control, millisecond precision, and noninvasive intervention and does not change the chemical environment of the system of interest.In this Account, we discuss research toward the dynamic control of lipid bilayer assembly and channel function, particularly the transport across the lipid bilayer-ion channel barrier of cells using light. We first summarize the manipulation of ion channel activity with light to modulate the channel’s natural activity. Based on the type of photoswitch employed, we can achieve novel functionalities with these channels, and control neural activity. Then we discuss the recent developments in light-induced transport through lipid bilayers. We focus on three different approaches: the incorporation of photoswitchable copolymers into the lipids, the doping of the lipid bilayer with photosensitive amphiphiles and the preparation of the lipid bilayers solely from photoswitchable lipids.These examples reflect the versatility of what we can achieve by manipulating biological systems with light, from triggering the permeability of a specific area of a lipid bilayer to controlling the behavior of a whole organism.
Co-reporter:Valentín Hornillos ; Manuel Pérez ; Martín Fañanás-Mastral
Journal of the American Chemical Society 2013 Volume 135(Issue 6) pp:2140-2143
Publication Date(Web):January 27, 2013
DOI:10.1021/ja312487r
A Cu(I)-phosphoramidite-based catalytic system that allows asymmetric allyl–allyl cross-coupling with high enantioselectivity is reported. This transformation tolerates a large variety of functionalized substrates. The versatility of this new reaction is illustrated in the catalytic asymmetric synthesis of the Martinelline alkaloids chromene derivative core.
Co-reporter:Yange Huang, Martín Fañanás-Mastral, Adriaan J. Minnaard and Ben L. Feringa
Chemical Communications 2013 vol. 49(Issue 32) pp:3309-3311
Publication Date(Web):06 Mar 2013
DOI:10.1039/C3CC41021H
A highly efficient method for the enantioselective synthesis of 1,4-dienes (skipped dienes) with a methyl-substituted central stereogenic carbon using copper-catalysed asymmetric allylic alkylation of diene bromides was developed. Excellent regio- and enantioselectivity (up to 97:3 SN2′/SN2 ratio and 99% ee) were achieved with broad substrate scope.
Co-reporter:Willem A. Velema, Marc C. A. Stuart, Wiktor Szymanski and Ben L. Feringa
Chemical Communications 2013 vol. 49(Issue 44) pp:5001-5003
Publication Date(Web):12 Apr 2013
DOI:10.1039/C3CC41018H
External control over self-assembling structures is achieved by incorporating an azobenzene photoswitch into the structure of a dichromonyl compound. The self-assembly of dichromonyl compounds into fibers leads to the formation of a hydrogel and can be triggered with visible light.
Co-reporter:Carlos Vila, Valentín Hornillos, Martín Fañanás-Mastral and Ben L. Feringa
Chemical Communications 2013 vol. 49(Issue 53) pp:5933-5935
Publication Date(Web):16 May 2013
DOI:10.1039/C3CC43105C
A highly regio- and enantioselective copper catalysed direct conjugate addition of Grignard reagents to chromones has been developed taking advantage of the reduced reactivity of the resulting magnesium enolates. This methodology tolerates a broad scope of alkyl Grignards including secondary alkyl magnesium reagents as well as functionalised chromones.
Co-reporter:Bin Mao, Martín Fañanás-Mastral, and Ben L. Feringa
Organic Letters 2013 Volume 15(Issue 2) pp:286-289
Publication Date(Web):January 7, 2013
DOI:10.1021/ol303141x
An efficient enantioselective synthesis of lactones was developed based on the catalytic asymmetric conjugate addition (ACA) of alkyl Grignard reagents to pyranones. The use of 2H-pyran-2-one for the first time in the ACA with Grignard reagents allows for a variety of further transformations to access highly versatile building blocks such as β-alkyl substituted aldehydes or β-bromo-γ-alkyl substituted alcohols with excellent regio- and stereoselectivity.
Co-reporter:Valentín Hornillos, Massimo Giannerini, Carlos Vila, Martín Fañanás-Mastral, and Ben L. Feringa
Organic Letters 2013 Volume 15(Issue 19) pp:5114-5117
Publication Date(Web):September 19, 2013
DOI:10.1021/ol402408v
Palladium-catalyzed direct cross-coupling of aryl chlorides with a wide range of (hetero)aryl lithium compounds is reported. The use of Pd-PEPPSI-IPent or Pd2(dba)3/XPhos as the catalyst allows for the preparation of biaryl and heterobiaryl compounds in high yields under mild conditions (room temperature to 40 °C) with short reaction times.
Co-reporter:Willem A. Velema ; Marco van der Toorn ; Wiktor Szymanski
Journal of Medicinal Chemistry 2013 Volume 56(Issue 11) pp:4456-4464
Publication Date(Web):April 25, 2013
DOI:10.1021/jm400115k
Allergic reactions affect millions of people worldwide. The need for new and effective antiallergic agents is evident, and insight into the underlying mechanisms that lead to allergic events is necessary. Herein, we report the design, synthesis, and activity of photoswitchable mast cell activation inhibitors. In mast cell degranulation assays, these inhibitors possess significantly greater potency than an original, chromone-based antiallergic agent. Furthermore, one of the photoswitchable inhibitors shows a significant difference in inhibitory activity between its two photoisomeric forms. Further optimization could ultimately lead to a photoswitchable compound suitable for studying mechanisms involved in allergic reactions in a novel manner, with activity addressable by light and with precise spatiotemporal control over events at the molecular level.
Co-reporter:Gábor London, Gregory T. Carroll and Ben L. Feringa
Organic & Biomolecular Chemistry 2013 vol. 11(Issue 21) pp:3477-3483
Publication Date(Web):05 Apr 2013
DOI:10.1039/C3OB40276B
The attachment of molecular rotary motors containing triethoxysilane functional groups to quartz, silicon and mica surfaces is described. Motors containing silane coupling agents in their structure form stable molecular layers on quartz and silicon surfaces. Motors attached to these surfaces were found to undergo photochemical and thermal isomerization steps similar to those observed in solution. Additionally, successful formation of molecular “carpets” on atomically flat mica extending micrometer-sized length scales is presented. These “carpets” were found to undergo morphological changes upon irradiation with UV-light.
Co-reporter:Martín Fañanás-Mastral, Johannes F. Teichert, José Antonio Fernández-Salas, Dorus Heijnen and Ben L. Feringa
Organic & Biomolecular Chemistry 2013 vol. 11(Issue 27) pp:4521-4525
Publication Date(Web):20 May 2013
DOI:10.1039/C3OB40655E
An enantioselective synthesis of almorexant, a potent antagonist of human orexin receptors, is presented. The chiral tetrahydroisoquinoline core structure was prepared via iridium-catalysed asymmetric intramolecular allylic amidation. Further key catalytic steps of the synthesis include an oxidative Heck reaction at room temperature and a hydrazine-mediated organocatalysed reduction.
Co-reporter:O. Ivashenko, J.T. van Herpt, B.L. Feringa, W.R. Browne, P. Rudolf
Chemical Physics Letters 2013 Volume 559() pp:76-81
Publication Date(Web):20 February 2013
DOI:10.1016/j.cplett.2012.12.060
The application of multiple spectroscopic techniques to the characterisation of self-assembled monolayers (SAMs) is essential for determining whether the desired surface functionalization was achieved, the molecules are integer after self-assembly and well-packed on the substrate. We investigated the use of surface enhanced Raman spectroscopy and X-ray photoelectron spectroscopy to characterise SAMs of a disulfide-functionalised nitrobenzene (i.e. 4-nitrophenyl-5-(1,2-dithiolan-3-yl)pentanoate). We show that electron-induced damage during acquisition of photoemission spectra of the monolayer occurs through reduction of the nitro group. Use of roughened bulk gold substrates to enhance the SERS sensitivity results in an increase in the rate at which the reduction proceeds.Graphical abstractHighlights► Nitroaromatic SAMs undergo fast reduction to amines on roughened Au beads. ► Reaction is promoted by secondary electrons from the substrate and H+. ► Higher rate of reduction is directly related to photoelectron emission efficiency. ► Roughened Au coated slide is the optimal substrate to measure both XPS and SERS.
Co-reporter:Sureshbabu Guduguntla, Martín Fañanás-Mastral, and Ben L. Feringa
The Journal of Organic Chemistry 2013 Volume 78(Issue 17) pp:8274-8280
Publication Date(Web):August 21, 2013
DOI:10.1021/jo401536u
An efficient one-pot synthesis of optically active β-alkyl-substituted alcohols through a tandem copper-catalyzed asymmetric allylic alkylation (AAA) with organolithium reagents and reductive ozonolysis is presented. Furthermore, hydroboration–oxidation following the Cu-catalyzed AAA leads to the corresponding homochiral γ-alkyl-substituted alcohols.
Co-reporter:Thomas C. Pijper, Tibor Kudernac, Wesley R. Browne, and Ben L. Feringa
The Journal of Physical Chemistry C 2013 Volume 117(Issue 34) pp:17623-17632
Publication Date(Web):July 29, 2013
DOI:10.1021/jp404925m
We report the properties and switching characteristics of a series of dithienylethene photochromic switches immobilized on gold. Self-assembled monolayers (SAMs) of three structurally related dithienylethenes were formed on roughened gold bead substrates and studied by surface-enhanced Raman spectroscopy (SERS). These data were compared to SERS spectra obtained by aggregation of colloidal gold, solid state Raman spectra, and Raman spectra calculated using density functional theory (DFT). Two of the dithienylethenes studied have an “asymmetric” design, which was demonstrated earlier to lower the thermal barrier for photochemical ring opening in solution. Herein, we show that, when immobilized on a gold surface, the asymmetric dithienylethenes in fact display a higher thermal barrier than that of their symmetric counterparts. In addition, we show that photochemical ring closing of asymmetric dithienylethenes is inhibited when immobilized on gold.
Co-reporter:Tibor Kudernac, Takao Kobayashi, Ayaka Uyama, Kingo Uchida, Shinichiro Nakamura, and Ben L. Feringa
The Journal of Physical Chemistry A 2013 Volume 117(Issue 34) pp:8222-8229
Publication Date(Web):July 29, 2013
DOI:10.1021/jp404924q
Diarylethene photochromic switches use light to drive structural changes through reversible electrocyclization reactions. High efficiency in dynamic photoswitching is a prerequisite for applications, as is thermal stability and the selective addressability of both isomers ring-opened and -closed diarylethenes. These properties can be optimized readily through rational variation in molecular structure. The efficiency with regard to switching as a function of structural variation is much less understood, with the exception of geometric requirements placed on the reacting atoms. Ultimately, increasing the quantum efficiency of photochemical switching in diarylethenes requires a detailed understanding of the excited-state potential energy surface(s) and the mechanisms involved in switching. Through studies of the temperature dependence, photoswitching and theoretical studies demonstrate the occurrence or absence of thermal activation barriers in three constitutional isomers that bear distinct π-conjugated systems. We found that a decrease in the thermal barriers correlates with an increase in switching efficiency. The origin of the barriers is assigned to the decrease in π-conjugation that is concomitant with the progress of the photoreaction. Furthermore, we show that balanced molecular design can minimize the change in the extent of π-conjugation during switching and lead to optimal bidirectional switching efficiencies. Our findings hold implications for future structural design of diarylethene photochromic switches.
Co-reporter:Céline M. Nicklaus; Adriaan J. Minnaard; Ben L. Feringa; Johannes G. deVries
ChemSusChem 2013 Volume 6( Issue 9) pp:1631-1635
Publication Date(Web):
DOI:10.1002/cssc.201300179
Co-reporter:Dr. Gábor London;Kuang-Yen Chen;Dr. Gregory T. Carroll ;Dr. Ben L. Feringa
Chemistry - A European Journal 2013 Volume 19( Issue 32) pp:10690-10697
Publication Date(Web):
DOI:10.1002/chem.201300500
Abstract
We report the synthesis of altitudinal molecular motors that contain functional groups in their rotor part. In an approach to achieve dynamic control over the properties of solid surfaces, a hydrophobic perfluorobutyl chain and a relatively hydrophilic cyano group were introduced to the rotor part of the motors. Molecular motors were attached to quartz surfaces by using interfacial 1,3-dipolar cycloadditions. To test the effect of the functional groups on the rotary motion, photochemical and thermal isomerization studies of the motors were performed both in solution and when attached to the surface. We found that the substituents have no significant effect on the thermal and photochemical processes, and the functionalized motors preserved their rotary function both in solution and on a quartz surface. Preliminary results on the influence of the functional groups on surface wettability are also described.
Co-reporter:Dr. Valentín Hornillos;Dr. Manuel Pérez;Dr. Martín Fañanás-Mastral ;Dr. Ben L. Feringa
Chemistry - A European Journal 2013 Volume 19( Issue 17) pp:5432-5441
Publication Date(Web):
DOI:10.1002/chem.201204364
Abstract
An efficient and highly enantioselective copper-catalyzed allylic alkylation of phosphonates and phosphine oxides with Grignard reagents and Taniaphos or phosphoramidites as chiral ligands is reported. Transformation of these products leads to a variety of new phosphorus-containing chiral intermediates.
Co-reporter:Bin Mao;Dr. Martín Fañanás-Mastral;Dr. Martin Lutz;Dr. Ben L. Feringa
Chemistry - A European Journal 2013 Volume 19( Issue 2) pp:761-770
Publication Date(Web):
DOI:10.1002/chem.201202859
Abstract
The copper-catalyzed hetero-allylic asymmetric alkylation (h-AAA) of functionalized Grignard reagents that contain alkene or alkyne moieties has been achieved with excellent regio- and enantioselectivity. The corresponding alkylation products were further transformed into a variety of highly functionalized cyclic and bicyclic alcohols with excellent control over the chemo-, regio-, and stereoselectivity.
Co-reporter:Dr. Wiktor Szyma&x144;ski;Dr. Bian Wu;Claudia Poloni;Dr. Dick B. Janssen;Dr. Ben L. Feringa
Angewandte Chemie 2013 Volume 125( Issue 7) pp:2122-2126
Publication Date(Web):
DOI:10.1002/ange.201208596
Co-reporter:Jochem T. van Herpt, Marc C. A. Stuart, Wesley R. Browne, and Ben L. Feringa
Langmuir 2013 Volume 29(Issue 28) pp:8763-8767
Publication Date(Web):2017-2-22
DOI:10.1021/la401286a
Mechanical triggering of gelation of an organic solution by a carbazole-based bisurea organogelator is described. Both the duration of the mechanical stimulation and the gelator concentration control the gelation process and the characteristics of the gel obtained.
Co-reporter:Dr. Wiktor Szyma&x144;ski;Dr. Bian Wu;Claudia Poloni;Dr. Dick B. Janssen;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2013 Volume 52( Issue 7) pp:2068-2072
Publication Date(Web):
DOI:10.1002/anie.201208596
Co-reporter:Massimo Giannerini;Dr. Valentín Hornillos;Dr. Carlos Vila;Dr. Martín Fañanás-Mastral;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2013 Volume 52( Issue 50) pp:13329-13333
Publication Date(Web):
DOI:10.1002/anie.201306427
Co-reporter:Massimo Giannerini ; Martín Fañanás-Mastral
Journal of the American Chemical Society 2012 Volume 134(Issue 9) pp:4108-4111
Publication Date(Web):February 21, 2012
DOI:10.1021/ja300743t
Allylic gem-dichlorides undergo regio- and enanantioselective (er up to 99:1) copper-catalyzed allylic alkylation with Grignard reagents affording chiral Z-vinyl chlorides. This highly versatile class of synthons can be subjected to Suzuki cross coupling affording optically active Z-alkenes and 1,3-cis,trans dienes.
Co-reporter:Arjen Cnossen ; Lili Hou ; Michael M. Pollard ; Philana V. Wesenhagen ; Wesley R. Browne
Journal of the American Chemical Society 2012 Volume 134(Issue 42) pp:17613-17619
Publication Date(Web):October 4, 2012
DOI:10.1021/ja306986g
Driving molecular rotary motors using visible light (530–550 nm) instead of UV light was achieved using palladium tetraphenylporphyrin as a triplet sensitizer. Visible light driven rotation was confirmed by UV/vis absorption, circular dichroism and 1H NMR spectroscopy and the rotation was confirmed to be unidirectional and with similar photostationary states, despite proceeding via a triplet instead of a singlet excited state of the molecular motor. Energy transfer proceeds in both inter- and intramolecular fashion from the triplet state of the porphyrin to the motor. Stern Volmer plots show that the rate of intermolecular quenching of the porphyrin excited state by the molecular motor is diffusion-controlled.
Co-reporter:Pieter H. Bos, Alena Rudolph, Manuel Pérez, Martín Fañanás-Mastral, Syuzanna R. Harutyunyan and Ben L. Feringa
Chemical Communications 2012 vol. 48(Issue 12) pp:1748-1750
Publication Date(Web):03 Jan 2012
DOI:10.1039/C2CC16855C
A highly efficient method is reported for the asymmetric ring opening of oxabicyclic alkenes with organolithium reagents. Using a copper/chiral phosphoramidite complex together with a Lewis acid (BF3·OEt2), full selectivity for the anti isomer and excellent enantioselectivities were obtained for the ring opened products.
Co-reporter:Arnold J. Boersma, Bas de Bruin, Ben L. Feringa and Gerard Roelfes
Chemical Communications 2012 vol. 48(Issue 18) pp:2394-2396
Publication Date(Web):11 Jan 2012
DOI:10.1039/C2CC17350F
DNA-based catalysis can be used to control the enantioselectivity of copper-catalysed Diels–Alder and Friedel–Crafts reactions to produce either enantiomer of the product by changing the denticity of the ligand coordinated to the Cu(II) ion, even though the DNA adopts a right handed helical conformation only.
Co-reporter:Valentín Hornillos, Anthoni W. van Zijl and Ben L. Feringa
Chemical Communications 2012 vol. 48(Issue 31) pp:3712-3714
Publication Date(Web):07 Mar 2012
DOI:10.1039/C2CC30395G
Highly enantioselective synthesis of chiral chromenes and tetrahydroquinolines is achieved by combining asymmetric copper-catalyzed allylic substitution with Grignard reagents and an efficient intramolecular Heck reaction. Moreover, the exocyclic double bond formed in the cyclisation was subjected to RCM, hydroboration and hydrogenation illuminating the synthetic versatility of these heterocycles.
Co-reporter:Jort Robertus, Siebren F. Reker, Thomas C. Pijper, Albert Deuzeman, Wesley R. Browne and Ben L. Feringa
Physical Chemistry Chemical Physics 2012 vol. 14(Issue 13) pp:4374-4382
Publication Date(Web):24 Jan 2012
DOI:10.1039/C2CP23756C
Here we report a photochemical and kinetic study of the thermal relaxation reaction of a double azobenzene system, in which two azobenzene photochromic units are connected via a phenyl ring. Upon UV irradiation, three thermally unstable isomers are formed. Kinetic studies using arrayed 1H-NMR spectroscopy revealed four distinct barriers for the thermal reversion to the stable isomer. The double isomerised Z,Z-2 can revert thermally to the E,E-2 isomer via either of two isomerisation pathways. The thermal Z to E isomerisations are not significantly affected by the state of the neighbouring azo-switching unit in the meta position. These findings are supported by quantum chemical calculations on the thermal Z to E isomerisation.
Co-reporter:Yange Huang, Adriaan J. Minnaard and Ben L. Feringa
Organic & Biomolecular Chemistry 2012 vol. 10(Issue 1) pp:29-31
Publication Date(Web):24 Nov 2011
DOI:10.1039/C1OB06700A
A very efficient total synthesis of the apoptosis inducer (−)-rasfonin has been developed using CuBr/JosiPhos catalyzed iterative asymmetric conjugate addition of MeMgBr and Feringa's butenolide.
Co-reporter:Xiaoyan Zhang, Wesley R. Browne and Ben L. Feringa
RSC Advances 2012 vol. 2(Issue 32) pp:12173-12176
Publication Date(Web):19 Oct 2012
DOI:10.1039/C2RA22440B
Highly functionalized graphene were obtained through a zwitterion intermediate cycloaddition onto exfoliated graphene flakes under new reaction conditions. The functionalized graphene obtained formed stable dispersions in common solvents, including dimethylformamide (DMF), CHCl3 and water. Its dispersion in water is especially useful in a wide range of areas, such as composites, devices and biological applications.
Co-reporter:Bin Mao;Dr. Yining Ji;Dr. Martín Fañanás-Mastral;Dr. Giuseppe Caroli;Auke Meetsma ;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2012 Volume 51( Issue 13) pp:3168-3173
Publication Date(Web):
DOI:10.1002/anie.201109075
Co-reporter:Dr. Martín Fañanás-Mastral;Dr. Manuel Pérez;Pieter H. Bos;Dr. Alena Rudolph;Dr. Syuzanna R. Harutyunyan;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2012 Volume 51( Issue 8) pp:1922-1925
Publication Date(Web):
DOI:10.1002/anie.201107840
Co-reporter:Bin Mao;Dr. Yining Ji;Dr. Martín Fañanás-Mastral;Dr. Giuseppe Caroli;Auke Meetsma ;Dr. Ben L. Feringa
Angewandte Chemie 2012 Volume 124( Issue 13) pp:3222-3227
Publication Date(Web):
DOI:10.1002/ange.201109075
Co-reporter:Dr. Manuel Pérez;Dr. Martín Fañanás-Mastral;Dr. Valentín Hornillos;Dr. Alena Rudolph;Dr. Pieter H. Bos;Dr. Syuzanna R. Harutyunyan;Dr. Ben L. Feringa
Chemistry - A European Journal 2012 Volume 18( Issue 38) pp:11880-11883
Publication Date(Web):
DOI:10.1002/chem.201202251
Co-reporter:Jiaobing Wang
Science 2011 Vol 331(6023) pp:1429-1432
Publication Date(Web):18 Mar 2011
DOI:10.1126/science.1199844
Photoisomerization of a molecular catalyst changes its conformation and switches the chirality of its reaction product.
Co-reporter:Jiaobing Wang ; Lili Hou ; Wesley R. Browne
Journal of the American Chemical Society 2011 Volume 133(Issue 21) pp:8162-8164
Publication Date(Web):May 4, 2011
DOI:10.1021/ja202882q
The interaction between two TEMPO spin centers connected to a photoswitchable overcrowded alkene changes from noncoupled (three-line EPR spectrum) in the trans state, where the two spin centers are separated by ∼22 Å, to strongly coupled (five-line EPR spectrum) in the cis state, where the separation is ∼7 Å, upon photoswitching. Importantly, the performance of the alkene switching unit is essentially unaffected by the spin centers.
Co-reporter:Thomas van Leeuwen, Thomas C. Pijper, Jetsuda Areephong, Ben L. Feringa, Wesley R. Browne and Nathalie Katsonis
Journal of Materials Chemistry A 2011 vol. 21(Issue 9) pp:3142-3146
Publication Date(Web):24 Jan 2011
DOI:10.1039/C0JM03626A
Upon addition of a chiral dopant to a nematic liquid crystal, amplification of molecular chirality can occur and consequently a cholesteric liquid crystal is formed. A major challenge in materials science consists in designing efficient chiral dopants that allow for control over chiral amplification by use of an external trigger, for example by irradiation with light, and thereby achieving the control of the dynamic and responsive structure of cholesteric liquid crystals. Here, a chiral photochromic switch bearing two chiral imine units connected viaphenyl spacers was synthesized and characterized in solution, where it can be photo-chemically converted from a colourless ring-opened form 1o to a coloured ring-closed form 1c, reversibly. We show that a small amount of 1o used as a dopant induces the formation of a stable cholesteric liquid crystal. The retention of the photochromic properties of 1, when used as a chiral dopant, allows for reversible photocontrol over the period of the cholesteric helix, and shows the highest values of helical twisting power achieved so far with diarylethene-based photoswitchable dopants.
Co-reporter:Johannes F. Teichert and Ben L. Feringa
Chemical Communications 2011 vol. 47(Issue 9) pp:2679-2681
Publication Date(Web):31 Jan 2011
DOI:10.1039/C0CC05160H
A new protocol for the Cu-catalysed asymmetric conjugate addition of Grignard reagents to coumarins has been developed. The corresponding products are formed in high yields and enantioselectivities. Through a sequential protocol involving conjugate addition followed by nucleophilic ring opening of the chiral enolate, chiral esters and amides are readily accessible.
Co-reporter:Martín Fañanás-Mastral, Bjorn ter Horst, Adriaan J. Minnaard and Ben L. Feringa
Chemical Communications 2011 vol. 47(Issue 20) pp:5843-5845
Publication Date(Web):18 Apr 2011
DOI:10.1039/C0CC05161F
A stereoselective synthesis of 1,2-hydroxyalkyl moieties is described herein. These valuable building blocks are obtained with complete regiocontrol and excellent stereocontrol both for the syn or the anti products, by choosing the appropriate enantiomer of the ligand in a copper-catalyzed asymmetric allylic alkylation of δ-alkoxy-substituted allyl bromides.
Co-reporter:Boelo Schuur, Bastiaan J. V. Verkuijl, Adriaan J. Minnaard, Johannes G. de Vries, Hero J. Heeres and Ben L. Feringa
Organic & Biomolecular Chemistry 2011 vol. 9(Issue 1) pp:36-51
Publication Date(Web):25 Nov 2010
DOI:10.1039/C0OB00610F
The literature on enantioselective liquid–liquid extraction (ELLE) spans more than half a century of research. Nonetheless, a comprehensive overview has not appeared during the past few decades. Enantioselective liquid–liquid extraction is a technology of interest for a wide range of chemists and chemical engineers in the fields of fine chemicals, pharmaceuticals, agrochemicals, fragrances and foods. In this review the principles and advances of resolution through enantioselective liquid–liquid extraction are discussed, starting with an introduction on the principles of enantioselective liquid–liquid extraction including host–guest chemistry, extraction and phase transfer mechanisms, and multistage liquid–liquid extraction processing. Then the literature on enantioselective liquid–liquid extraction systems is reviewed, structured on extractant classes. The following extractant classes are considered: crown ether based extractants, metal complexes and metalloids, extractants based on tartrates, and a final section with all other types of chiral extractants.
Co-reporter:Angela Mammana, Gregory T. Carroll, Jetsuda Areephong, and Ben L. Feringa
The Journal of Physical Chemistry B 2011 Volume 115(Issue 40) pp:11581-11587
Publication Date(Web):August 31, 2011
DOI:10.1021/jp205893y
The interesting structural, electronic, and optical properties of DNA provide fascinating opportunities for developing nanoscale smart materials by integrating DNA with opto-electronic components. In this article we demonstrate the electrostatic binding of an amine-terminated dithienylethene (DET) molecular switch to double-stranded synthetic polynucleotides. The DET switch can undergo photochemical ring-closure and opening reactions. Circular dichroism (CD) and UV–vis spectroscopy show that both the open, 1o, and the closed, 1c, forms of the switch bind to DNA. Upon addition of DNA to a solution of 1o or 1c, the UV–vis spectrum displays a hypochromic effect, indicative of an interaction between the switch and the DNA. The chirality of the DNA double-helix is transmitted to the switching unit which displays a well-defined CD signal upon supramolecular complexation to the DNA. Additionally, the CD signal of the DNA attenuates, demonstrating that both components of the complex mutually influence each other's structure; the DNA induces chirality in the switch, and the switch modifies the structure of the DNA. Modulation of the chiroptical properties of the complex is achieved by photochemically switching the DET between its ring open and closed isomers. A pH dependence study of the binding shows that when the pH is increased the switches lose their binding ability, indicating that electrostatic interactions between protonated amines and the negatively charged phosphate backbone are the dominant driving force for binding to the DNA. A comparison of poly(deoxyguanylic-deoxycytidylic) acid [poly(dGdC)2] polynucleotides with poly(deoxyadenylic-deoxythymidylic) acid [poly(dAdT)2] shows distinct differences in the CD spectra of the complexes.
Co-reporter:Bastiaan J.V. Verkuijl;Johannes G. de Vries
Chirality 2011 Volume 23( Issue 1) pp:34-43
Publication Date(Web):
DOI:10.1002/chir.20834
Abstract
We report that 3,3′-diaryl-BINOL phosphoric acids are effective enantioselective extractants in chiral separation methods based on reactive liquid–liquid extraction. These new extractants are capable of separating racemic benzylic primary amine substrates. The effect of the nature of the substituents at the 3,3′-positions of the host were examined as well as the structure of the substrate, together with important parameters such as the organic solvent, the pH of the aqueous phase, and the host stoichiometry. Titration of the substrate with the host was monitored by FTIR, NMR, UV–Vis, and CD spectroscopy, which provided insight into the structure of the host–guest complex involved in extraction. Chirality 2011. © 2010 Wiley-Liss, Inc.
Co-reporter:Dr. Nata&x161;a Mr&x161;i&x107;;Dr. Lavinia Panella;Edwin G. IJpeij;Dr. Adriaan J. Minnaard;Dr. Ben L. Feringa;Dr. Johannes G. deVries
ChemCatChem 2011 Volume 3( Issue 7) pp:1139-1142
Publication Date(Web):
DOI:10.1002/cctc.201100008
Co-reporter:Xiaoyan Zhang;Lili Hou;Arjen Cnossen;Dr. Anthony C. Coleman;Oleksii Ivashenko;Dr. Petra Rudolf;Dr. Bart J. vanWees;Dr. Wesley R. Browne;Dr. Ben L. Feringa
Chemistry - A European Journal 2011 Volume 17( Issue 32) pp:8957-8964
Publication Date(Web):
DOI:10.1002/chem.201100980
Abstract
Two types of graphene-based hybrid materials, graphene-TPP (TPP=tetraphenylporphyrin) and graphene-PdTPP (PdTPP=palladium tetraphenylporphyrin), were prepared directly from pristine graphene through one-pot cycloaddition reactions. The hybrid materials were characterized by thermogravimetric analysis (TGA), by TEM, by UV/Vis, FTIR, Raman, and luminescence spectroscopy, and by fluorescence/phosphorescence lifetime measurements. The presence of the covalent linkages between graphene and porphyrin was confirmed by FTIR and Raman spectroscopy and further supported by control experiments. The presence of TPP (or PdTPP) in the hybrid material was demonstrated by UV/Vis spectroscopy, with TGA results indicating that the graphene-TPP and graphene-PdTPP hybrid materials contained approximately 18 % TPP and 20 % PdTPP. The quenching of fluorescence (or phosphorescence) and reduced lifetimes suggest excited state energy/electron transfer between graphene and the covalently attached TPP (or PdTPP) molecules.
Co-reporter:Lachlan S. Campbell-Verduyn;Leila Mirfeizi;Anne K. Schoonen;Dr. Rudi A. Dierckx;Dr. Philip H. Elsinga;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2011 Volume 50( Issue 47) pp:11117-11120
Publication Date(Web):
DOI:10.1002/anie.201105547
Co-reporter:Dr. Wiktor Szyma&x144;ski;Alja Westerbeek;Dr. Dick B. Janssen;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2011 Volume 50( Issue 45) pp:10712-10715
Publication Date(Web):
DOI:10.1002/anie.201105164
Co-reporter:Dr. Alena Rudolph;Pieter H. Bos;Auke Meetsma;Dr. Adriaan J. Minnaard ;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2011 Volume 50( Issue 26) pp:5834-5838
Publication Date(Web):
DOI:10.1002/anie.201102069
Co-reporter:Johannes F. Teichert;Dr. Martín Fañanás-Mastral ;Dr. Ben L. Feringa
Angewandte Chemie International Edition 2011 Volume 50( Issue 3) pp:688-691
Publication Date(Web):
DOI:10.1002/anie.201006039
Co-reporter:Anouk S. Lubbe, Nopporn Ruangsupapichat, Giuseppe Caroli, and Ben L. Feringa
The Journal of Organic Chemistry 2011 Volume 76(Issue 21) pp:8599-8610
Publication Date(Web):September 19, 2011
DOI:10.1021/jo201583z
A study is presented on the control of rotary motion of an appending rotor unit in a light-driven molecular motor. Two new light driven molecular motors were synthesized that contain aryl groups connected to the stereogenic centers. The aryl groups behave as bidirectional free rotors in three of the four isomers of the 360° rotation cycle, but rotation of the rotors is hindered in the fourth isomer. Kinetic studies of both motor and rotor functions of the two new compounds are given, using 1H NMR, 2D-EXSY NMR, and UV–vis spectroscopy. In addition, we present the development of a new method for introducing a range of aryl substituents at the α-carbon of precursors for molecular motors. The present study shows how the molecular system can be photochemically switched between a state of free rotor rotation and a state of hindered rotation and reveals the dynamics of coupled rotary systems.
Co-reporter:Dr. Alena Rudolph;Pieter H. Bos;Auke Meetsma;Dr. Adriaan J. Minnaard ;Dr. Ben L. Feringa
Angewandte Chemie 2011 Volume 123( Issue 26) pp:5956-5960
Publication Date(Web):
DOI:10.1002/ange.201102069
Co-reporter:Johannes F. Teichert;Dr. Martín Fañanás-Mastral ;Dr. Ben L. Feringa
Angewandte Chemie 2011 Volume 123( Issue 3) pp:714-717
Publication Date(Web):
DOI:10.1002/ange.201006039
Co-reporter:Oleksii Ivashenko ; Hella Logtenberg ; Jetsuda Areephong ; Anthony C. Coleman ; Philana V. Wesenhagen ; Edzard M. Geertsema ; Nicolas Heureux ; Ben L. Feringa ; Petra Rudolf ;Wesley R. Browne
The Journal of Physical Chemistry C 2011 Volume 115(Issue 46) pp:22965-22975
Publication Date(Web):October 10, 2011
DOI:10.1021/jp206889y
Although bistability of molecular switches in solution is well established, achieving highly robust bistable molecular switching in self-assembled monolayers remains a challenge. Such systems are highly attractive as components in organic electronics and molecular-based photo and electrochromic devices. Here we report a remarkably robust surface confined bisthiaxanthylidene redox switch that shows excellent bistability, manifested in reversible changes in spectroscopic and electrochemical properties and in physical properties such as water contact angle changes (ca. 30° difference in water contact angle between the two redox states of a bisthiaxanthylidene self-assembled monolayer). The effect of surface immobilization of bis-thiaxanthylidene on its photochromic, thermal and electrochemical properties is described. Surface immobilization is achieved by incorporating thiol- and alkylsiloxy-terminated “legs” on one of the tricyclic aromatic units. The molecular switch in its neutral and dicationic state, generated by bulk electrolysis, was characterized in solution, in the solid state and on surfaces, by UV/vis absorption, Fourier transform infrared, X-ray photoelectron, and Raman spectroscopies and by cyclic voltammetry. In solution, the redox switching to the dicationic state is achieved by oxidation at 1.2 V versus SCE. Reduction of the dication at <0.4 V results in initial formation of a highly unstable twisted conformation that reverts via a syn-folded conformational state to the most stable (anti-folded) conformer. Although the syn-folded state can be obtained by UV irradiation at <0 °C, the twisted conformation is not observable in solution, even at 200 K. Remarkably, in monolayers on electrodes this highly unstable form (which is generated by reduction of the dicationic state) is relatively stable even for several minutes. This stability is ascribed to the formation of densely packed monolayers in which the intermolecular interactions provide for a substantial barrier to thermal interconversion of the various conformational states.
Co-reporter:Gregory T. Carroll, Gábor London, Tatiana Fernández Landaluce, Petra Rudolf, and Ben L. Feringa
ACS Nano 2011 Volume 5(Issue 1) pp:622
Publication Date(Web):January 5, 2011
DOI:10.1021/nn102876j
We report the attachment of altitudinal light-driven molecular motors to surfaces using 1,3-dipolar cycloaddition reactions. Molecular motors were designed containing azide or alkyne groups for attachment to alkyne- or azide-modified surfaces. Surface attachment was characterized by UV−vis, IR, XPS, and ellipsometry measurements. Surface-bound motors were found to undergo photochemical and thermal isomerizations consistent with unidirectional rotation in solution. Confinement at a surface was found to reduce the rate of the thermal isomerization process. The rate of thermal isomerization was also dependent on the surface coverage of the motors. In solution, changes in the UV−vis signal that accompany thermal isomerization can be fit with a single monoexponential decay. In contrast, thermal isomerization of the surface-bound motors does not follow a single monoexponential decay and was found to fit a biexponential decay. Both one- and two-legged motors were attached to surfaces. The kinetics of thermal isomerization was not affected by the valency of attachment, indicating that the changes in kinetics from solution to surface systems are related to interactions between the surface-bound motors.Keywords: adhesion; click chemistry; molecular motors; photochemistry; surfaces
Co-reporter:Francesco Bonardi;Erik Halza;Martin Walko;François Du Plessis;Nico Nouwen;Arnold J. M. Driessen
PNAS 2011 Volume 108 (Issue 19 ) pp:7775-7780
Publication Date(Web):2011-05-10
DOI:10.1073/pnas.1101705108
Protein translocation in Escherichia coli is mediated by the translocase that in its minimal form consists of the protein-conducting channel SecYEG, and the motor
protein, SecA. SecYEG forms a narrow pore in the membrane that allows passage of unfolded proteins only. Molecular dynamics
simulations suggest that the maximal width of the central pore of SecYEG is limited to . To access the functional size of the SecYEG pore, the precursor of outer membrane protein A was modified with rigid spherical
tetraarylmethane derivatives of different diameters at a unique cysteine residue. SecYEG allowed the unrestricted passage
of the precursor of outer membrane protein A conjugates carrying tetraarylmethanes with diameters up to , whereas a sized molecule blocked the translocation pore. Translocation of the protein-organic molecule hybrids was strictly proton
motive force-dependent and occurred at a single pore. With an average diameter of an unfolded polypeptide chain of , the pore accommodates structures of at least , which is vastly larger than the predicted maximal width of a single pore by molecular dynamics simulations.
Co-reporter:Jort Robertus, Wesley R. Browne and Ben L. Feringa
Chemical Society Reviews 2010 vol. 39(Issue 1) pp:354-378
Publication Date(Web):14 Oct 2009
DOI:10.1039/B906608J
In complex organisms, cells are often dependent on their extracellular matrix (ECM) for structural integrity, the mechanical properties of tissues, and for signaled regulation of cellular processes including adhesion, migration, growth, secretion, gene expression and apoptosis. Achieving dynamic control, i.e. by using an external stimulus, over the interactions between cells and artificial interfaces holds considerable promise in tissue engineering, medicine, cell biology and immunology. For example, improved spatial control over cell–surface interaction is potentially useful in the design of cell-based screening devices. Dynamic control over SAMs for cell adhesion provides an additional handle to direct and study the attachment of cells to surfaces, e.g., in studying cell spreading from a predetermined pattern in order to screen the cytotoxicity of drug candidates. However, ‘reversible’ control of cell adhesion onto substrates is an area that is still in its infancy. In this critical review recent developments in cell adhesion of mammalian cells to SAM-modified surfaces, the physical properties of which can be controlled by an external stimulus, e.g. by light, electrochemistry, etc., are discussed (118 references).
Co-reporter:Barbara Weiner, Wiktor Szymański, Dick B. Janssen, Adriaan J. Minnaard and Ben L. Feringa
Chemical Society Reviews 2010 vol. 39(Issue 5) pp:1656-1691
Publication Date(Web):24 Feb 2010
DOI:10.1039/B919599H
In this critical review, the progress in catalytic asymmetric synthesis of β-amino acids is discussed, covering the literature since 2002. The review treats transition metal catalysis, organocatalysis and biocatalysis and covers the most important synthetic methods, such as hydrogenation, the Mannich reaction and conjugate additions (160 references).
Co-reporter:Tim den Hartog ; Alena Rudolph ; Beatriz Maciá ; Adriaan J. Minnaard
Journal of the American Chemical Society 2010 Volume 132(Issue 41) pp:14349-14351
Publication Date(Web):September 23, 2010
DOI:10.1021/ja105704m
Cu-TolBINAP-catalyzed conjugate addition of Grignard reagents to 4-chloro-α,β-unsaturated esters, thioesters, and ketones leads to 4-chloro-3-alkyl-substituted thioesters and ketones in up to 84% yield and up to 96% ee upon protonation of the corresponding enolates at low temperature. Tandem conjugate addition−enolate trapping, however, yields trans-1-alkyl-2-substituted cyclopropanes in up to 92% yield and up to 98% ee. The versatility of this reaction is illustrated by the formation of key intermediates for the formal syntheses of cascarillic acid and grenadamide.
Co-reporter:Martín Fañanás-Mastral
Journal of the American Chemical Society 2010 Volume 132(Issue 38) pp:13152-13153
Publication Date(Web):September 7, 2010
DOI:10.1021/ja105585y
The in situ transformation of α,β-unsaturated aldehydes into α-chloroallylic acetates and subsequent copper-catalyzed regio- and enantioselective (up to 94% ee) allylic alkylation with Grignard reagents provides chiral enol acetates and chiral β-substituted aldehydes in a one-pot protocol.
Co-reporter:Jiaobing Wang ; Artem Kulago ; Wesley R. Browne
Journal of the American Chemical Society 2010 Volume 132(Issue 12) pp:4191-4196
Publication Date(Web):March 8, 2010
DOI:10.1021/ja910829b
Dynamic control over the formation of H- or J-type aggregates of chromophores is of fundamental importance for developing responsive organic optoelectronic materials. In this study, the first example of photoswitching between a nonstacked and an intramolecularly H-stacked arrangement of perylenebisimides (PBI) is demonstrated. The system is composed of a central switching unit (overcrowded alkene) tethered to two PBI chromophores. cis−trans isomerization of the switching unit, induced by alternate irradiation at 312 and 365 nm, can drive two PBI chromophores reversibly between an intramolecularly “aggregated” and “nonaggregated” state. Distinct changes in UV−vis absorption and fluorescence spectra are observed following photoisomerization. This approach allows for efficient control of intramolecular H-stack formation with no significant intermolecular interactions spanning over at least 4 orders of magnitude of concentration (from 10−8 to 10−4 M) and a range of solvents and temperatures.
Co-reporter:Gregory T. Carroll, Michael M. Pollard, Richard van Delden and Ben L. Feringa
Chemical Science 2010 vol. 1(Issue 1) pp:97-101
Publication Date(Web):24 May 2010
DOI:10.1039/C0SC00162G
Using circular dichroism (CD) spectroscopy, we show that light-driven rotary molecular motors based on overcrowded alkenes can function in a self-assembled monolayer on semi-transparent gold films.
Co-reporter:Gregory T. Carroll, Mahthild G. M. Jongejan, Dirk Pijper and Ben L. Feringa
Chemical Science 2010 vol. 1(Issue 4) pp:469-472
Publication Date(Web):09 Jul 2010
DOI:10.1039/C0SC00159G
A chiral poly(n-hexyl isocyanate) can form ordered mesoscale toroidal structures when drop-cast on a variety of surfaces.
Co-reporter:Jetsuda Areephong, Hella Logtenberg, Wesley R. Browne and Ben L. Feringa
Organic Letters 2010 Volume 12(Issue 9) pp:2132-2135
Publication Date(Web):April 1, 2010
DOI:10.1021/ol1006295
The direct synthesis of six-fold symmetric hexaphenylbenzenes with multiple photochromic dithienylethene units via a cobalt-catalyzed cyclotrimerization is reported. This approach allows for six photochromic units to be held in proximity with a well-defined spatial separation without affecting the photochromic properties of each unit.
Co-reporter:Lachlan S. Campbell-Verduyn, Wiktor Szymański, Christiaan P. Postema, Rudi A. Dierckx, Philip H. Elsinga, Dick B. Janssen and Ben L. Feringa
Chemical Communications 2010 vol. 46(Issue 6) pp:898-900
Publication Date(Web):05 Jan 2010
DOI:10.1039/B919434G
Halohydrin dehalogenase (HheC) can perform enantioselective azidolysis of aromatic epoxides to 1,2-azido alcohols which are subsequently ligated to alkynes producing chiral hydroxy triazoles in a one-pot procedure with excellent enantiomeric excess.
Co-reporter:Johannes F. Teichert, Suyan Zhang, Anthoni W. van Zijl, Jan Willem Slaa, Adriaan J. Minnaard, and Ben L. Feringa
Organic Letters 2010 Volume 12(Issue 20) pp:4658-4660
Publication Date(Web):September 23, 2010
DOI:10.1021/ol101944j
Asymmetric copper-catalyzed allylic substitution with methylmagnesium bromide is employed in combination with ring-closing olefin metathesis or ene−yne metathesis to achieve the synthesis of chiral, unsaturated nitrogen heterocycles. The resulting six- to eight-membered chiral heterocycles are accessible in high yields and with excellent enantioselectivities.
Co-reporter:Xiaoyan Zhang, Anthony C. Coleman, Nathalie Katsonis, Wesley R. Browne, Bart J. van Wees and Ben L. Feringa
Chemical Communications 2010 vol. 46(Issue 40) pp:7539-7541
Publication Date(Web):16 Sep 2010
DOI:10.1039/C0CC02688C
A dispersion of graphene in ethanol was achieved using solvent exchange from N-methyl-2-pyrrolidone (NMP) that enables broader application of dispersed graphene.
Co-reporter:Bjorn ter Horst, Ben L. Feringa and Adriaan J. Minnaard
Chemical Communications 2010 vol. 46(Issue 15) pp:2535-2547
Publication Date(Web):09 Mar 2010
DOI:10.1039/B926265B
This feature article gives an overview of iterative synthetic methods for the construction of deoxypropionates, an important class of polyketides. The catalytic and non-catalytic methodologies discussed are based on highly stereoselective reactions which can be carried out in an iterative fashion. Non-catalytic methods are described first, followed by state of the art catalytic iterative protocols. The application of the iterative methods in the synthesis of natural products is discussed as well.
Co-reporter:Bastiaan J. V. Verkuijl, Wiktor Szymański, Bian Wu, Adriaan J. Minnaard, Dick B. Janssen, Johannes G. de Vries and Ben L. Feringa
Chemical Communications 2010 vol. 46(Issue 6) pp:901-903
Publication Date(Web):04 Dec 2009
DOI:10.1039/B921661H
An efficient and selective method for the extraction of α-amino acids in preference over their β-isomers using PdCl2(PPh3)2 was discovered, which enables the separation of product mixtures obtained in the enantioselective enzymatic formation of β-amino acids.
Co-reporter:Wiktor Szymanski;Christiaan P. Postema;Chiara Tarabiono;Florian Berthiol;Lachlan Campbell-Verduyn;Stefaan de Wildeman;Johannes G. de Vries;Dick B. Janssen
Advanced Synthesis & Catalysis 2010 Volume 352( Issue 13) pp:2111-2115
Publication Date(Web):
DOI:10.1002/adsc.201000502
Abstract
The multistep catalytic process using designer cells, either added as freshly prepared suspensions or as stable lyophilized powder, and click reaction can be performed in one pot. The sequence of four reactions allows the production of both enantiomers of β-hydroxytriazoles with high enantiomeric excess.
Co-reporter:Tim denHartog;Beatriz Maciá;AdriaanJ. Minnaard ;BenL. Feringa
Advanced Synthesis & Catalysis 2010 Volume 352( Issue 6) pp:999-1013
Publication Date(Web):
DOI:10.1002/adsc.201000109
Abstract
The highly enantioselective synthesis of α-methyl-substituted esters is reported in up to 90% yield and up to 99% ee using copper-TaniaPhos as chiral catalyst. The transformation proved scalable to at least 6.6 mmol (1.7 g scale). The products of this transformation have been further elaborated to multifunctional building blocks with a single (branched esters and acids) or multiple stereogenic centers (vicinal dimethyl esters, as well as, hydroxy- or iodo-substituted lactones).
Co-reporter:Pieter H. Bos, Beatriz Maciá, M. Ángeles Fernández-Ibáñez, Adriaan J. Minnaard and Ben L. Feringa
Organic & Biomolecular Chemistry 2010 vol. 8(Issue 1) pp:47-49
Publication Date(Web):01 Oct 2009
DOI:10.1039/B917269F
An efficient method is reported for the highly enantioselective copper-catalyzed conjugate addition of dialkylzinc reagents to α,β-unsaturated sulfones using a monodentate phosphoramidite ligand.
Co-reporter:Ewold W. Dijk, Arnold J. Boersma, Ben L. Feringa and Gerard Roelfes
Organic & Biomolecular Chemistry 2010 vol. 8(Issue 17) pp:3868-3873
Publication Date(Web):25 Jun 2010
DOI:10.1039/C005048B
A kinetic study of DNA-based catalytic enantioselective Friedel–Crafts alkylation and Michael addition reactions showed that DNA affects the rate of these reactions significantly. Whereas in the presence of DNA, a large acceleration was found for the Friedel–Crafts alkylation and a modest acceleration in the Michael addition of dimethyl malonate, a deceleration was observed when using nitromethane as nucleophile. Also, the enantioselectivities proved to be dependent on the DNA sequence. In comparison with the previously reported Diels–Alder reaction, the results presented here suggest that DNA plays a similar role in both cycloaddition and conjugate addition reactions.
Co-reporter:Qian Li, Tieme A. van den Berg, Ben L. Feringa and Gerard Roelfes
Dalton Transactions 2010 vol. 39(Issue 34) pp:8012-8021
Publication Date(Web):26 Jul 2010
DOI:10.1039/B927145G
A series of monotopic N4Py (N,N-bis(2-pyridylmethyl)-N-bis(2-pyridyl)methylamine, 1) derived ligands have been prepared and evaluated in the iron catalyzed oxidative cleavage of pUC18 DNA, in the presence and absence of external reducing agent DTT. The mononuclear iron(II) complexes induce efficient DNA cleavage in air with a low catalyst loading. It was demonstrated that covalent attachment of 9-aminoacridine, ammonium group or 1,8-naphthalimide leads to increased DNA cleavage activity in the presence of a reductant. Also some complexes displayed a small degree of double-strand DNA cleavage activity. In contrast, in the absence of reducing agent, no beneficial effect of the covalently attached DNA binding moieties was observed, which was attributed to the reduction from Fe(III) to Fe(II), which is required for oxygen activation, becoming rate limiting. Mechanistic investigations revealed an important role for superoxide radicals. A proposed mechanism involves the formation of an Fe(III)–OOH intermediate as the active species or precursor.
Co-reporter:Bastiaan J. V. Verkuijl;Anne K. Schoonen;Adriaan J. Minnaard;Johannes G. de Vries
European Journal of Organic Chemistry 2010 Volume 2010( Issue 27) pp:5197-5202
Publication Date(Web):
DOI:10.1002/ejoc.201000790
Abstract
The first palladium based extraction system using chiral N-based ligands in the enantioselective liquid–liquid extraction (ELLE) of underivatized amino acids, is presented. The system shows the highest selectivity for the ELLE of methionine with metal complexes as hosts reported to date. Furthermore, the host can be prepared in situ from commercially available compounds. The dependency of the system on parameters such as pH, organic solvent, and temperature has been established. The intrinsic selectivity was deduced by determination of the association constants of the palladium complex with the tryptophan enantiomers.
Co-reporter:Bjorn ter Horst;Jeroen van Wermeskerken, ;Adriaan J. Minnaard
European Journal of Organic Chemistry 2010 Volume 2010( Issue 1) pp:38-41
Publication Date(Web):
DOI:10.1002/ejoc.200901120
Abstract
The first asymmetric synthesis of mycolipenic acid and mycolipanolic acid by using an improved iterative procedure involving catalytic asymmetric conjugate addition of MeMgBr as the key step is described. Mycolipenic and mycolipanolic acid are obtained in 11 steps with perfect stereocontrol, and both acids are identical to their counterparts from natural sources.
Co-reporter:Andranik Kazaryan, Jos C. M. Kistemaker, Lars V. Schäfer, Wesley R. Browne, Ben L. Feringa and Michael Filatov
The Journal of Physical Chemistry A 2010 Volume 114(Issue 15) pp:5058-5067
Publication Date(Web):March 29, 2010
DOI:10.1021/jp100609m
Light-driven molecular rotary motors derived from chiral overcrowded alkenes represent a broad class of compounds for which photochemical rearrangements lead to large scale motion of one part of the molecule with respect to another. It is this motion/change in molecular shape that is employed in many of their applications. A key group in this class are the molecular rotary motors that undergo unidirectional light-driven rotation about a double bond through a series of photochemical and thermal steps. In the present contribution we report a combined quantum chemical and molecular dynamics study of the mechanism of the rotational cycle of the fluorene-based molecular rotary motor 9-(2,4,7-trimethyl-2,3-dihydro-1H-inden-1-ylidene)-9H-fluorene (1). The potential energy surfaces of the ground and excited singlet states of 1 were calculated, and it was found that conical intersections play a central role in the mechanism of photo conversion between the stable conformer of 1 and its metastable conformer. Molecular dynamics simulations indicate that the average lifetime of the fluorene motor in the excited state is 1.40 ± 0.10 ps when starting from the stable conformer, which increases to 1.77 ± 0.13 ps for the reverse photoisomerization. These simulations indicate that the quantum yield of photoisomerization of the stable conformer is 0.92, whereas it is only 0.40 for the reverse photoisomerization. For the first time, a theoretical understanding of the experimentally observed photostationary state of 1 is reported that provides a detailed picture of the photoisomerization dynamics in overcrowded alkene-based molecular motor 1. The analysis of the electronic structure of the fluorene molecular motor holds considerable implications for the design of molecular motors. Importantly, the role of pyramidalization and conical intersections offer new insight into the factors that dominate the photostationary state achieved in these systems.
Co-reporter:AnthonyC. Coleman Dr.;Jetsuda Areephong Dr.;Javier Vicario Dr.;Auke Meetsma;WesleyR. Browne Dr. ;BenL. Feringa Dr.
Angewandte Chemie International Edition 2010 Volume 49( Issue 37) pp:6580-6584
Publication Date(Web):
DOI:10.1002/anie.201002939
Co-reporter:Da-Hui Qu Dr. ;BenL. Feringa Dr.
Angewandte Chemie International Edition 2010 Volume 49( Issue 6) pp:1107-1110
Publication Date(Web):
DOI:10.1002/anie.200906064
Co-reporter:Artem A. Kulago, Emile M. Mes, Martin Klok, Auke Meetsma, Albert M. Brouwer and Ben L. Feringa
The Journal of Organic Chemistry 2010 Volume 75(Issue 3) pp:666-679
Publication Date(Web):December 23, 2009
DOI:10.1021/jo902207x
A series of molecular motors featuring a symmetrical acridane stator is reported. Photochemical and thermal isomerization experiments confirm that this stator, in combination with a thiopyran rotor, results in molecular rotary motion in which the rate-determining thermal helix inversion proceeds effectively only at temperatures above 373 K. The introduction of a cyclopentanylidene rotor unit results in a decrease in steric hindrance with respect to the stator, and as a consequence, a 1012-fold increase in the rate of thermal helix inversion is observed. Nanosecond transient absorption spectroscopy allows for the thermal processes to be followed accurately at ambient temperature. The rotary motor is shown to be able to operate at 0.5 MHz rotational frequencies under optimal conditions.
Co-reporter:Thomas C. Pijper, Dirk Pijper, Michael M. Pollard, Frédéric Dumur, Stephen G. Davey, Auke Meetsma and Ben L. Feringa
The Journal of Organic Chemistry 2010 Volume 75(Issue 3) pp:825-838
Publication Date(Web):January 7, 2010
DOI:10.1021/jo902348u
Controlling the unidirectional rotary process of second-generation molecular motors demands access to these motors in their enantiomerically pure form. In this paper, we describe an enantioselective route to three new second-generation light-driven molecular motors. Their synthesis starts with the preparation of an optically active α-methoxy-substituted upper-half ketone involving an enzymatic resolution. The subsequent conversion of this ketone to the corresponding hydrazone by treatment with hydrazine led to full racemization. However, conversion to a TBDMS-protected hydrazone by treatment with bis-TBDMS hydrazine, prepared according to a new procedure, proceeds with nearly full retention of the stereochemical integrity. Oxidation of the TBDMS-protected hydrazone and subsequent coupling to a lower-half thioketone followed by recrystallization provided the molecular motors with >99% ee. As these are the first molecular motors that have a methoxy substituent at the stereogenic center, the photochemical and thermal isomerization steps involved in the rotary cycle of one of these new molecules were studied in detail with various spectroscopic techniques.
Co-reporter:AnthonyC. Coleman Dr.;Jetsuda Areephong Dr.;Javier Vicario Dr.;Auke Meetsma;WesleyR. Browne Dr. ;BenL. Feringa Dr.
Angewandte Chemie 2010 Volume 122( Issue 37) pp:6730-6734
Publication Date(Web):
DOI:10.1002/ange.201002939
Co-reporter:Da-Hui Qu Dr. ;BenL. Feringa Dr.
Angewandte Chemie 2010 Volume 122( Issue 6) pp:1125-1128
Publication Date(Web):
DOI:10.1002/ange.200906064
Co-reporter:Nataša Mršić, Thomas Jerphagnon, Adriaan J. Minnaard, Ben L. Feringa, Johannes G. de Vries
Tetrahedron: Asymmetry 2010 Volume 21(Issue 1) pp:7-10
Publication Date(Web):29 January 2010
DOI:10.1016/j.tetasy.2009.11.017
The rhodium-catalyzed asymmetric hydrogenation of 2-substituted N-protected-indoles using monodentate phosphoramidites as ligands was examined. Full conversion and 74% ee, were obtained with a catalyst based on PipPhos. The use of a catalytic amount of base is necessary for activity; best results were obtained with Cs2CO3.Figure optionsDownload full-size imageDownload as PowerPoint slideMethyl (S)-1-acetyl-2,3-dihydro-1H-indole-2-carboxylateC12H13NO3Ee 74%[α]D = −43.8 (c 1.03, CHCl3)Absolute configuration: (S)Source of chirality: catalytic asymmetric hydrogenation
Co-reporter:Tim den Hartog, Derk Jan van Dijken, Adriaan J. Minnaard, Ben L. Feringa
Tetrahedron: Asymmetry 2010 Volume 21(11–12) pp:1574-1584
Publication Date(Web):23 June 2010
DOI:10.1016/j.tetasy.2010.04.057
A novel iterative approach to the synthesis of the naturally ubiquitous syn deoxypropionate motif is reported. The route comprises a new Horner–Wadsworth–Emmons reagent to prepare α,β,γ,δ-bisunsaturated thioesters. Next, two Me-substituents are introduced in high yield, regio- and enantioselectivity using sequential asymmetric Cu-catalyzed 1,6-conjugate addition, base-catalyzed olefin isomerization and Cu-catalyzed enantioselective 1,4-conjugate addition. After reduction to the aldehyde these transformations can be repeated to install three or more Me groups with a syn 1,3-relationship.Figure optionsDownload full-size imageDownload as PowerPoint slide(S,2E,4E)-S-Ethyl 10-(benzyloxy)-7-methyldeca-2,4-dienethioateC20H28O2SSource of chirality: asymmetric catalysis93% ee>95:5 E/Z-ratio[α]D20=+1.2 (c 1.0, CHCl3)Absolute configuration: (S,2E,4E)(S,E)-S-Ethyl 5-methylnon-3-enethioateC12H22OSSource of chirality: asymmetric catalysis89% ee99:1 regioselectivity (1,6:1,4)[α]D20=+9.0 (c 1.0, CHCl3)Absolute configuration: (S,E)(S,E)-S-Ethyl 5,7-dimethyloct-3-enethioateC12H22OSSource of chirality: asymmetric catalysis82% ee95:5 regioselectivity (1,6:1,4)[α]D20=+8.3 (c 1.0, CHCl3)Absolute configuration: (S,E)(S,E)-S-Ethyl 5-methyl-7-phenylhept-3-enethioateC16H22OSSource of chirality: asymmetric catalysis82% ee99:1 regioselectivity (1,6:1,4)[α]D20=+4.1 (c 1.0, CHCl3)Absolute configuration: (S,E)(S,E)-S-Ethyl 8-(benzyloxy)-5-methyloct-3-enethioateC18H26O2SSource of chirality: asymmetric catalysis86% ee94:6 regioselectivity (1,6:1,4)[α]D20=+5.9 (c 1.0, CHCl3)Absolute configuration: (S,E)(5S,7S,E)-S-Ethyl 10-(benzyloxy)-5,7-dimethyldec-3-enethioateC21H32O2SSource of chirality: asymmetric catalysis87% syn-product and 13% of anti-product85:15 regioselectivity (1,6:1,4)[α]D20=-0.9 (c 1.0, CHCl3)Absolute configuration: (5S,7S,E)(5R,7S,E)-S-Ethyl 10-(benzyloxy)-5,7-dimethyldec-3-enethioateC21H32O2SSource of chirality: asymmetric catalysis78% anti-product and 22% of syn-product (13f)87:13 regioselectivity (1,6:1,4)[α]D20=-2.2 (c 1.0, CHCl3)Absolute configuration: (5R,7S,E)(3S,5S)-S-Ethyl 3,5-dimethylnonanethioateC13H26OSSource of chirality: asymmetric catalysis96% syn-product and 4% of anti-product92% ee[α]D20=-1.3 (c 1.0, CHCl3)Absolute configuration: (3S,5S)(3R,5S)-S-Ethyl 3,5-dimethylnonanethioateC13H26OSSource of chirality: asymmetric catalysis92% anti-product and 8% of syn-product85% ee[α]D20=+13.9 (c 1.0, CHCl3)Absolute configuration: (3R,5S)(3S,5S)-S-Ethyl 3,5,7-trimethyloctanethioateC13H26OSSource of chirality: asymmetric catalysis90% syn and 10% anti[α]D20=-9.1 (c 1.0, CH2Cl2)Absolute configuration: (3S,5S)(3S,5S)-S-Ethyl 3,5-dimethyl-7-phenylheptanethioateC17H26OSSource of chirality: asymmetric catalysis94% syn and 6% of anti[α]D20=-4.8 (c 1.0, CHCl3)Absolute configuration: (3S,5S)(3S,5S)-S-Ethyl 8-(benzyloxy)-3,5-dimethyloctanethioateC19H30O2SSource of chirality: asymmetric catalysis94% syn and 6% anti[α]D20=-2.8 (c 1.0, CH2Cl2)Absolute configuration: (3S,5S)(2E,4E,7S,9S)-S-Ethyl 7,9-dimethyltrideca-2,4-dienethioateC17H30OSSource of chirality: asymmetric catalysis>95:5 E/Z-ratio[α]D20=+9.4 (c 1.0, CHCl3)Absolute configuration: (2E,4E,7S,9S)(5S,7S,9S,E)-S-Ethyl 5,7,9-trimethyltridec-3-enethioateC18H34OSSource of chirality: asymmetric catalysis91% syn- and 9% anti-product90:10 regioselectivity (1,6:1,4)[α]D20=-2.4 (c 1.0, CHCl3)Absolute configuration: (5S,7S,9S,E)(5R,7S,9S,E)-S-Ethyl 5,7,9-trimethyltridec-3-enethioateC18H34OSSource of chirality: asymmetric catalysis72% anti- and 28% syn-product90:10 regioselectivity (1,6:1,4)[α]D20=+2.5 (c 1.0, CH2Cl2)Absolute configuration: (5R,7S,9S,E)
Co-reporter:Thomas Jerphagnon, M. Gabriella Pizzuti, Adriaan J. Minnaard and Ben L. Feringa
Chemical Society Reviews 2009 vol. 38(Issue 4) pp:1039-1075
Publication Date(Web):11 Feb 2009
DOI:10.1039/B816853A
A comprehensive overview of recent literature from 2003 concerning advances in enantioselective copper catalysed 1,4-addition of organometallic reagents to α,β-unsaturated compounds is given in this critical review. About 200 ligands and catalysts are presented, with a focus on stereoselectivities, catalyst loading, ligand structure and substrate scope. A major part is devoted to trapping and tandem reactions and a variety of recent synthetic applications are used to illustrate the practicality and current state of the art of 1,4-addition of organometallic reagents. Finally several mechanistic studies are discussed (162 references).
Co-reporter:Barbara Weiner ; Alejandro Baeza ; Thomas Jerphagnon
Journal of the American Chemical Society 2009 Volume 131(Issue 27) pp:9473-9474
Publication Date(Web):June 17, 2009
DOI:10.1021/ja902591g
A new method for the synthesis of β3-amino acids is presented. Phthalimide protected allylic amines are oxidized under Wacker conditions selectively to aldehydes using PdCl2 and CuCl or Pd(MeCN)2Cl(NO2) and CuCl2 as complementary catalyst systems. The aldehydes are produced in excellent yields and exhibit a large substrate scope. β-Amino acids and alcohols are synthesized by oxidation or reduction and subsequent deprotection.
Co-reporter:Nataša Mršić ; Adriaan J. Minnaard ; Ben L. Feringa ;Johannes G. de Vries
Journal of the American Chemical Society 2009 Volume 131(Issue 24) pp:8358-8359
Publication Date(Web):June 1, 2009
DOI:10.1021/ja901961y
Asymmetric hydrogenation of N-aryl acetophenone imines using iridium/PipPhos leads to very high enantioselectivities up to >99% depending on the presence of electron-donating substituents in the 2-, 3-, and 5-position of the aryl ring. If the substituent is 2-methoxy, the resultant secondary amines are easily oxidatively deprotected using trichloroisocyanuric acid to give the primary amines in good yield with full retention of enantioselectivity.
Co-reporter:Tibor Kudernac ; Nadja Sändig ; Tatiana Fernández Landaluce ; Bart J. van Wees ; Petra Rudolf ; Nathalie Katsonis ; Francesco Zerbetto
Journal of the American Chemical Society 2009 Volume 131(Issue 43) pp:15655-15659
Publication Date(Web):October 14, 2009
DOI:10.1021/ja901718q
Understanding the formation of crystalline polymorphs is of importance for various applications of materials science. Polymorphism of Schiff base derivatives has recently attracted considerable attention because of its influence on photochromic and thermochromic properties of their 3D crystals. The present investigation extends the study of Schiff base polymorphism to the molecular level by using a combination of scanning tunneling microscopy at the liquid/solid interface and molecular modeling. It is demonstrated that polymorphism of 4-(dodecyloxy)-N-(4-dodecylphenyl)-2-hydroxybenzaldimine (PHB), a Schiff base substituted by alkyl side chains, can occur in 2D crystals when PHB is adsorbed on a surface that is able to exchange charge with the molecule. In particular, on Au(111), PHB molecules self-organize not only into a columnar packing but also in dimer structures. Theoretical and experimental results demonstrate that the dimer-based structure observed on Au(111) originates from molecule/surface interactions, which in turn modify molecule/molecule interactions. The results highlight that the Au(111) substrate is far from being a passive part of the self-assembled system and plays a crucial role in the morphology of 2D polymorphs.
Co-reporter:Tibor Kudernac, Nathalie Katsonis, Wesley R. Browne and Ben L. Feringa
Journal of Materials Chemistry A 2009 vol. 19(Issue 39) pp:7168-7177
Publication Date(Web):19 Jun 2009
DOI:10.1039/B902009H
This Highlight reviews recent advances in developing light-controlled molecular switches that can be of use for molecular and organic electronics.
Co-reporter:Gábor London, Gregory T. Carroll, Tatiana Fernández Landaluce, Michael M. Pollard, Petra Rudolf and Ben L. Feringa
Chemical Communications 2009 (Issue 13) pp:1712-1714
Publication Date(Web):20 Feb 2009
DOI:10.1039/B821755F
A Cu(I)-catalyzed 1,3-dipolar cycloaddition was used to construct a monolayer of an altitudinal molecular motor on quartz and silicon substrates, which represents the fastest light-driven molecular motor, to date, grafted to a solid surface.
Co-reporter:Lachlan S. Campbell-Verduyn, Leila Mirfeizi, Rudi A. Dierckx, Philip H. Elsinga and Ben L. Feringa
Chemical Communications 2009 (Issue 16) pp:2139-2141
Publication Date(Web):19 Mar 2009
DOI:10.1039/B822994E
Monodentate phosphoramidite ligands are used to accelerate the copper(I)-catalyzed 1,3-dipolar cycloaddition of azides and alkynes (CuAAC) rapidly yielding a wide variety of functionalized 1,4-disubstituted-1,2,3-triazoles; Cu(I) and Cu(II) salts both function as the copper source in aqueous solution to provide excellent yields.
Co-reporter:Nata&x161;a Mr&x161;i&x107;;Thomas Jerphagnon;AdriaanJ. Minnaard;BenL. Feringa;JohannesG. de Vries
Advanced Synthesis & Catalysis 2009 Volume 351( Issue 16) pp:2549-2552
Publication Date(Web):
DOI:10.1002/adsc.200900522
Abstract
A catalyst made in situ from the (cyclooctadiene)iridium chloride dimer, [Ir(COD)Cl]2, and the monodentate phosphoramidite ligand (S)-PipPhos was used in the enantioselective hydrogenation of 2- and 2,6-substituted quinoxalines. In the presence of piperidine hydrochloride as additive full conversions and enantioselectivities of up to 96% are obtained.
Co-reporter:Martin Klok, Wesley R. Browne and Ben L. Feringa
Physical Chemistry Chemical Physics 2009 vol. 11(Issue 40) pp:9124-9131
Publication Date(Web):11 Aug 2009
DOI:10.1039/B906611J
The combination of a photochemical and a thermal equilibrium in overcrowded alkenes, which is the basis for unidirectional rotation of light-driven molecular rotary motors, is analysed in relation to the actual average rotation rates of such structures. Experimental parameters such as temperature, concentration and irradiation intensity could be related directly to the effective rates of rotation that are achieved in solution by means of photochemical and thermal reaction rate theory. It is found that molecular properties, including absorption characteristics and photochemical quantum yields, are of less importance to the overall rate of rotation than the experimental parameters. This analysis holds considerable implications in the design of experimental conditions for functional molecular systems that will rely on high rates of rotation, and shows that average rotation rates comparable to ATPase or flagella motors are within reach assuming common experimental parameters.
Co-reporter:Thomas Jerphagnon Dr.;ArnaudJ.A. Gayet Dr.;Florian Berthiol Dr.;Vincent Ritleng Dr.;Nata&x161;a Mr&x161;i&x107;;Auke Meetsma;Michel Pfeffer Dr.;AdriaanJ. Minnaard Dr.;BenL. Feringa Dr.;JohannesG. deVries Dr.
Chemistry - A European Journal 2009 Volume 15( Issue 46) pp:12780-12790
Publication Date(Web):
DOI:10.1002/chem.200902103
Abstract
The lipase-catalysed resolution of alcohols and amines yields only 50 % of the desired enantiopure product. However, addition of a racemisation catalyst leads to 100 % yield in what is called a dynamic kinetic resolution (DKR). There is a need for new racemisation catalysts that are fast and compatible with the conditions of the enzymatic reaction. We show that cationic half-sandwich ruthena- and iridacycle complexes are highly active and efficient in the racemisation of chiral alcohols and amines. Upon activation with base, these complexes are able to selectively racemise alcohols, whereas the non-activated complexes are selective catalysts for the racemisation of amines. We have applied the iridacycles in the DKR of racemic β-chloroalcohols to produce chiral epoxides in a biphasic system in good yields and high ee (ee=enantiomeric excess).
Co-reporter:Fiora Rosati;ArnoldJ. Boersma;JaapE. Klijn Dr.;Auke Meetsma;BenL. Feringa ;Gerard Roelfes Dr.
Chemistry - A European Journal 2009 Volume 15( Issue 37) pp:9596-9605
Publication Date(Web):
DOI:10.1002/chem.200900456
Abstract
The recently developed concept of DNA-based asymmetric catalysis involves the transfer of chirality from the DNA double helix in reactions using a noncovalently bound catalyst. To date, two generations of DNA-based catalysts have been reported that differ in the design of the ligand for the metal. Herein we present a study of the first generation of DNA-based catalysts, which contain ligands comprising a metal-binding domain linked through a spacer to a 9-aminoacridine moiety. Particular emphasis has been placed on determining the effect of DNA on the structure of the CuII complex and the catalyzed Diels–Alder reaction. The most important findings are that the role of DNA is limited to being a chiral scaffold; no rate acceleration was observed in the presence of DNA. Furthermore, the optimal DNA sequence for obtaining high enantioselectivities proved to contain alternating GC nucleotides. Finally, DNA has been shown to interact with the CuII complex to give a chiral structure. Comparison with the second generation of DNA-based catalysts, which bear bipyridine-type ligands, revealed marked differences, which are believed to be related to the DNA microenvironment in which the catalyst resides and where the reaction takes place.
Co-reporter:Arjen Cnossen;Dirk Pijper;Tibor Kudernac Dr.;MichaelM. Pollard Dr.;Nathalie Katsonis Dr.;BenL. Feringa
Chemistry - A European Journal 2009 Volume 15( Issue 12) pp:2768-2772
Publication Date(Web):
DOI:10.1002/chem.200802718
Co-reporter:Matthijs K.J. ter Wiel, Ben L. Feringa
Tetrahedron 2009 65(22) pp: 4332-4339
Publication Date(Web):
DOI:10.1016/j.tet.2009.03.081
Co-reporter:ArnoldJ. Boersma;BenL. Feringa Dr. ;Gerard Roelfes Dr.
Angewandte Chemie International Edition 2009 Volume 48( Issue 18) pp:3346-3348
Publication Date(Web):
DOI:10.1002/anie.200900371
Co-reporter:M.Ángeles Fernández-Ibáñez Dr.;Beatriz Maciá Dr.;MariaGabriella Pizzuti Dr.;AdriaanJ. Minnaard Dr. ;BenL. Feringa Dr.
Angewandte Chemie International Edition 2009 Volume 48( Issue 49) pp:9339-9341
Publication Date(Web):
DOI:10.1002/anie.200904981
Co-reporter:Johan Visser, Nathalie Katsonis, Javier Vicario and Ben L. Feringa
Langmuir 2009 Volume 25(Issue 10) pp:5980-5985
Publication Date(Web):April 2, 2009
DOI:10.1021/la804196r
In this contribution, we show how zinc-5,10,15,20-meso-tetradodecylporphyrins (Zn-TDPs) self-assemble into stable organized arrays on the surface of graphite, thus positioning their metal center at regular distances from each other, creating a molecular pattern, while retaining the possibility to coordinate additional ligands. We also demonstrate that Zn-TDPs coordinated to 3-nitropyridine display a higher tendency to be adsorbed at the surface of highly oriented pyrolytic graphite (HOPG) than noncoordinated ones. In order to investigate the two-dimensional (2D) self-assembly of coordinated Zn-TDPs, solutions with different relative concentrations of 3-nitropyridine and Zn-TDP were prepared and deposited on the surface of HOPG. STM measurements at the liquid−solid interface reveal that the ratio of coordinated Zn-TDPs over noncoordinated Zn-TDPs is higher at the n-tetradecane/HOPG interface than in n-tetradecane solution. This enhanced binding of the axial ligand at the liquid/solid interface is likely related to the fact that physisorbed Zn-TDPs are better binding sites for nitropyridines.
Co-reporter:ArnoldJ. Boersma;BenL. Feringa Dr. ;Gerard Roelfes Dr.
Angewandte Chemie 2009 Volume 121( Issue 18) pp:3396-3398
Publication Date(Web):
DOI:10.1002/ange.200900371
Co-reporter:Wiktor Szymanski, Bian Wu, Barbara Weiner, Stefaan de Wildeman, Ben L. Feringa and Dick B. Janssen
The Journal of Organic Chemistry 2009 Volume 74(Issue 23) pp:9152-9157
Publication Date(Web):November 6, 2009
DOI:10.1021/jo901833y
An approach is described for the synthesis of aromatic α- and β-amino acids that uses phenylalanine aminomutase to catalyze a highly enantioselective addition of ammonia to substituted cinnamic acids. The reaction has a broad scope and yields substituted α- and β-phenylalanines with excellent enantiomeric excess. The regioselectivity of the conversion is determined by substituents present at the aromatic ring. A box model for the enzyme active site is proposed, derived from the influence of the hydrophobicity of substituents on the enzyme affinity toward various substrates.
Co-reporter:Edzard M. Geertsema;Sense Jan van der Molen;Marco Martens
PNAS 2009 Volume 106 (Issue 40 ) pp:16919-16924
Publication Date(Web):2009-10-06
DOI:10.1073/pnas.0903710106
We deal with the issue of quantifying and optimizing the rotation dynamics of synthetic molecular motors. For this purpose,
the continuous four-stage rotation behavior of a typical light-activated molecular motor was measured in detail. All reaction
constants were determined empirically. Next, we developed a Markov model that describes the full motor dynamics mathematically.
We derived expressions for a set of characteristic quantities, i.e., the average rate of quarter rotations or “velocity,”
V, the spread in the average number of quarter rotations, D, and the dimensionless Péclet number, Pe = V/D. Furthermore, we determined the rate of full, four-step rotations (Ωeff), from which we derived another dimensionless quantity, the “rotational excess,” r.e. This quantity, defined as the relative difference between total forward (Ω+) and backward (Ω−) full rotations, is a good measure of the unidirectionality of the rotation process. Our model provides a pragmatic tool
to optimize motor performance. We demonstrate this by calculating V, D, Pe, Ωeff, and r.e. for different rates of thermal versus photochemical energy input. We find that for a given light intensity, an optimal temperature
range exists in which the motor exhibits excellent efficiency and unidirectional behavior, above or below which motor performance
decreases.
Co-reporter:RikP. Megens;TiemeA. vandenBerg Dr.;A.Dowine deBruijn;BenL. Feringa Dr. ;Gerard Roelfes Dr.
Chemistry - A European Journal 2009 Volume 15( Issue 7) pp:1723-1733
Publication Date(Web):
DOI:10.1002/chem.200801409
Co-reporter:Arjen Cnossen;Dirk Pijper;Tibor Kudernac Dr.;MichaelM. Pollard Dr.;Nathalie Katsonis Dr.;BenL. Feringa
Chemistry - A European Journal 2009 Volume 15( Issue 23) pp:
Publication Date(Web):
DOI:10.1002/chem.200990084
No abstract is available for this article.
Co-reporter:Syuzanna R. Harutyunyan, Tim den Hartog, Koen Geurts, Adriaan J. Minnaard and Ben L. Feringa
Chemical Reviews 2008 Volume 108(Issue 8) pp:2824
Publication Date(Web):August 13, 2008
DOI:10.1021/cr068424k
Co-reporter:Arnold J. Boersma ; Jaap E. Klijn ; Ben L. Feringa ;Gerard Roelfes
Journal of the American Chemical Society 2008 Volume 130(Issue 35) pp:11783-11790
Publication Date(Web):August 6, 2008
DOI:10.1021/ja803170m
This study shows that the role of DNA in the DNA-based enantioselective Diels−Alder reaction of azachalcone with cyclopentadiene is not limited to that of a chiral scaffold. DNA in combination with the copper complex of 4,4′-dimethyl-2,2′-bipyridine (Cu−L1) gives rise to a rate acceleration of up to 2 orders of magnitude compared to Cu−L1 catalysis alone. Furthermore, both the enantioselectivity and the rate enhancement prove to be dependent on the DNA-sequence. These features are the main reasons for the efficient and enantioselective catalysis observed with salmon testes DNA/Cu−L1 in the Diels−Alder reaction. The fact that absolute levels of stereocontrol can be achieved with a simple and weak DNA-binding complex like Cu−L1 is a clear demonstration of the power of the supramolecular approach to hybrid catalysis.
Co-reporter:Nathalie Katsonis, Emmanuelle Lacaze and Ben L. Feringa
Journal of Materials Chemistry A 2008 vol. 18(Issue 18) pp:2065-2073
Publication Date(Web):07 Mar 2008
DOI:10.1039/B718170A
Understanding the structure of chiral self-assemblies at fluid/solid interfaces is not only relevant from a fundamental point of view but also crucial for the development of new artificial molecular materials and systems operating at the interface between a conductive surface and a fluid. Moreover, elucidating how the balance between intermolecular and interfacial interactions influences expression of chirality in 2D crystals contributes to the understanding of how chirality can be created, amplified and/or transmitted from the nanoscale to the macroscale. Therefore, the present contribution reviews recent selected investigations on how chirality is expressed in monolayers spontaneously formed by physisorption at fluid/solid interfaces, with an emphasis on the crucial role played by molecule/surface interactions. The techniques used involve scanning tunnelling microscopy (STM) and X-ray diffraction under grazing incidence (GIXD) operated at the fluid/solid interface.
Co-reporter:Davide Pantarotto, Wesley R. Browne and Ben L. Feringa
Chemical Communications 2008 (Issue 13) pp:1533-1535
Publication Date(Web):16 Nov 2007
DOI:10.1039/B715310D
Covalent attachment of the enzymes glucose oxidase and catalase to carbon nanotubes enables the tandem catalytic conversion of glucose and H2O2 formed to power autonomous movement of the nanotubes.
Co-reporter:M. Ángeles Fernández-Ibáñez, Beatriz Maciá, Adriaan J. Minnaard and Ben L. Feringa
Chemical Communications 2008 (Issue 22) pp:2571-2573
Publication Date(Web):01 Apr 2008
DOI:10.1039/B801749B
Chiral tertiary alcohols were obtained with good yields and enantioselectivities via a catalytic Reformatsky reaction with ketones, including the challenging diaryl ketones, using chiral BINOL derivatives.
Co-reporter:Johannes W. de Boer, Wesley R. Browne, Syuzanna R. Harutyunyan, Laura Bini, Theodora D. Tiemersma-Wegman, Paul L. Alsters, Ronald Hage and Ben L. Feringa
Chemical Communications 2008 (Issue 32) pp:3747-3749
Publication Date(Web):17 Jul 2008
DOI:10.1039/B808355J
High turnover enantioselectivealkenecis-dihydroxylation is achieved with H2O2 catalysed by manganese based complexes containing chiral carboxylato ligands.
Co-reporter:Kingo Uchida, Shin-ichiro Sukata, Yuji Matsuzawa, Masako Akazawa, Jaap J. D. de Jong, Nathalie Katsonis, Yuko Kojima, Shinichiro Nakamura, Jetsuda Areephong, Auke Meetsma and Ben L. Feringa
Chemical Communications 2008 (Issue 3) pp:326-328
Publication Date(Web):04 Dec 2007
DOI:10.1039/B715251E
Dithienylhexafluorocyclopentene with (R)- or (S)-N-phenylethylamide substituents formed rod-like and 0.2–1.0 µm-thick plate-like crystals by sublimation; upon UV irradiation, the crystals bent concavely to the incident light and finally rolled crystals were obtained; the bent crystals were reconverted to flat crystals by visible light irradiation.
Co-reporter:Nata&x161;a Mr&x161;i&x107;;Laurent Lefort;Jeroen A.F. Boogers;AdriaanJ. Minnaard;BenL. Feringa;JohannesG. deVries
Advanced Synthesis & Catalysis 2008 Volume 350( Issue 7-8) pp:1081-1089
Publication Date(Web):
DOI:10.1002/adsc.200800007
Abstract
The monodentate BINOL-derived phosphoramidite PipPhos is used as ligand for the iridium-catalyzed asymmetric hydrogenation of 2- and 2,6-substituted quinolines. If tri-ortho-tolylphosphine and/or chloride salts are used as additives enantioselectivities are strongly enhanced up to 89%. NMR indicates that no mixed complexes are formed upon addition of tri-ortho-tolylphosphine.
Co-reporter:Dirk Pijper and Ben L. Feringa
Soft Matter 2008 vol. 4(Issue 7) pp:1349-1372
Publication Date(Web):07 May 2008
DOI:10.1039/B801886C
In this review, various systems developed in recent years which aim to control dynamic helicity at the macro- and supramolecular level are discussed. The strong interactions between the individual molecular components in these controlled helical assemblies, ranging from columnar aggregates to helical polymers and cholesteric liquid crystals, result in stereoinduction from the molecular level to the level of these macro- and supramolecular helical architectures. Therefore these systems are potentially useful for various applications, including responsive materials and chirality sensors and amplifiers.
Co-reporter:Michael M. Pollard, Auke Meetsma and Ben L. Feringa
Organic & Biomolecular Chemistry 2008 vol. 6(Issue 3) pp:507-512
Publication Date(Web):13 Dec 2007
DOI:10.1039/B715652A
Structural modification of unidirectional light-driven rotary molecular motors in which the naphthalene moieties are exchanged for substituted phenyl moieties are reported. This redesign provides an additional tool to control the speed of the motors, and should enable the design and synthesis of more complex systems.
Co-reporter:Johannes H. Hurenkamp, Jaap J. D. de Jong, Wesley R. Browne, Jan H. van Esch and Ben L. Feringa
Organic & Biomolecular Chemistry 2008 vol. 6(Issue 7) pp:1268-1277
Publication Date(Web):21 Feb 2008
DOI:10.1039/B719095F
The synthesis and characterisation of a coumarin–dithienylcyclopentene–coumarin symmetric triad (CSC) and a perylene bisimide–dithienylcyclopentene–coumarin asymmetric triad (PSC) are reported. In both triads the switching function of the photochromic dithienylcyclopentene unit is retained. For CSC an overall 50% quenching of the coumarin fluorescence is observed upon ring-closure of the dithienylcyclopentene component, which, taken together with the low PSS (<70%), indicates that energy transfer quenching of the coumarin component by the dithienylcyclopentene in the closed state is efficient. Upon ring opening of the dithienylcyclopentene unit the coumarin emission is restored fully. The PSC triad shows efficient energy transfer from the coumarin to the perylene bisimide unit when the dithienylcyclopentene unit is in the open state. When the dithienylcyclopentene is in the closed (PSS) state a 60% decrease in sensitized perylene bisimide emission intensity is observed due to competitive quenching of the coumarin excited state and partial quenching of the perylene excited state by the closed dithienylcyclopentene unit. This modulation of energy transfer is reversible over several cycles for both the symmetric and asymmetric tri-component systems.
Co-reporter:Masako Akazawa, Kingo Uchida, Jaap J. D. de Jong, Jetsuda Areephong, Marc Stuart, Giuseppe Caroli, Wesley R. Browne and Ben L. Feringa
Organic & Biomolecular Chemistry 2008 vol. 6(Issue 9) pp:1544-1547
Publication Date(Web):01 Apr 2008
DOI:10.1039/B802580K
Dithienylperhydrocyclopentene-bisurea-based low molecular weight gelators are described that function as photoresponsive organogels that show a remarkable gel-to-liquid transition upon irradiation. The two series of derivatives, with and without alkyl spacers between the urea hydrogen bonding groups and the photochromic unit, show different gelation behavior. Upon UV irradiation of the gels, a gel liquified at only 1.4% conversion of the photochromic unit. Transmission electron microscopy (TEM) shows that the gel fibres consist of thin ribbons. Semi-empirical (PM3) calculations indicate that the hydrogen bonding between the open-ring isomer (o) molecules is weak, and that formation of the closed-ring isomer (c) destabilises the hydrogen bonding further. The results indicate that a small amount of the closed-ring isomer will disrupt the intermolecular hydrogen-bonding, leading to disintegration of the gel fibre ribbons and hence reversible liquification.
Co-reporter:Michael M. Pollard, Philana V. Wesenhagen, Dirk Pijper and Ben L. Feringa
Organic & Biomolecular Chemistry 2008 vol. 6(Issue 9) pp:1605-1612
Publication Date(Web):11 Mar 2008
DOI:10.1039/B718294E
Light-driven rotary molecular motors based on overcrowded alkenes can be substituted with electron-donating and electron-withdrawing substituents (R = OMe, Cl and CN) in direct conjugation with the central double bond (the axis of rotation) without having a significant influence on the rate-limiting, thermal isomerisation step of their rotary cycle. This indicates that in this system, it is predominantly steric factors that determine the barrier to the thermal helix inversion. In contrast, the quantum yield and photoequilibria in the photochemical step were found to be quite sensitive to the combination of substituent and solvent employed.
Co-reporter:Johannes W. de Boer, Paul L. Alsters, Auke Meetsma, Ronald Hage, Wesley R. Browne and Ben L. Feringa
Dalton Transactions 2008 (Issue 44) pp:6283-6295
Publication Date(Web):10 Oct 2008
DOI:10.1039/B809177C
The role played by the additives salicylic acid, L-ascorbic acid and oxalic acid in promoting the catalytic activity of [MnIV2(O)3(tmtacn)2](PF6)2 {1(PF6)2, where tmtacn = N,N′,N″-trimethyl-1,4,7-triazacyclononane} in the epoxidation and cis-dihydroxylation of alkenes with H2O2 and in suppressing the catalysed decomposition of H2O2 is examined. Whereas aliphatic and aromatic carboxylic acids effect enhancement of the catalytic activity of 1 through the in situ formation dinuclear carboxylato bridged complexes of the type [MnIII2(μ-O)(μ-RCO2)2(tmtacn)2]2+, for L-ascorbic acid and oxalic acid notable differences in reactivity are observed. Although for L-ascorbic acid key differences in the spectroscopic properties of the reaction mixtures are observed compared with carboxylic acids, the involvement of carboxylic acids formed in situ is apparent. For oxalic acid the situation is more complex with two distinct catalyst systems in operation; the first, which engages in epoxidation only, is dominant until the oxalic acid additive is consumed completely at which point carboxylic acids formed in situ take on the role of additives to form a second distinct catalyst system, i.e. that which was observed for alkyl and aromatic carboxylic acids, which yield both cis-diol and epoxide products.
Co-reporter:Nathalie Katsonis Dr.;Hong Xu;RobertM. Haak;Tibor Kudernac Dr.;&x17d;eljko Tomovi&x107; Dr.;Subi George Dr.;Mark VanderAuweraer ;AlbertP.H.J. Schenning Dr.;E.W. Meijer ;BenL. Feringa ;Steven DeFeyter
Angewandte Chemie International Edition 2008 Volume 47( Issue 27) pp:4997-5001
Publication Date(Web):
DOI:10.1002/anie.200800255
Co-reporter:M.Ángeles Fernández-Ibáñez Dr.;Beatriz Maciá Dr.;AdriaanJ. Minnaard Dr. ;BenL. Feringa Dr.
Angewandte Chemie International Edition 2008 Volume 47( Issue 7) pp:1317-1319
Publication Date(Web):
DOI:10.1002/anie.200704841
Co-reporter:M.Ángeles Fernández-Ibáñez Dr.;Beatriz Maciá Dr.;AdriaanJ. Minnaard Dr. ;BenL. Feringa Dr.
Angewandte Chemie 2008 Volume 120( Issue 7) pp:1337-1339
Publication Date(Web):
DOI:10.1002/ange.200704841
Co-reporter:Philana Wesenhagen, Jetsuda Areephong, Tatiana Fernandez Landaluce, Nicolas Heureux, Nathalie Katsonis, Johan Hjelm, Petra Rudolf, Wesley R. Browne and Ben L. Feringa
Langmuir 2008 Volume 24(Issue 12) pp:6334-6342
Publication Date(Web):May 16, 2008
DOI:10.1021/la703999x
A bifunctional substituted dithienylcyclopentene photochromic switch bearing electropolymerisable methoxystyryl units, which enable immobilization of the photochromic unit on conducting substrates, is reported. The spectroscopic, electrochemical, and photochemical properties of a monomer in solution are compared with those of the polymer formed through oxidative electropolymerization. The electroactive polymer films prepared on gold, platinum, glassy carbon, and indium titanium oxide (ITO) electrodes were characterized by cyclic voltammetry, X-ray photoelectron spectroscopy (XPS), and atomic force microscopy (AFM). The thickness of the films formed is found to be limited to several monolayer equivalents. The photochromic properties and stability of the polymer films have been investigated by UV/vis spectroscopy, electrochemistry, and XPS. Although the films are electrochemically and photochemically stable, their mechanical stability with respect to adhesion to the electrode was found to be sensitive to both the solvent and the electrode material employed, with more apolar solvents, glassy carbon, and ITO electrodes providing good adhesion of the polymer film. The polymer film is formed consistently as a thin film and can be switched both optically and electrochemically between the open and closed state of the photochromic dithienylethene moiety.
Co-reporter:MichaelM. Pollard Dr.;MatthijsK.J. terWiel Dr.;RichardA. vanDelden Dr.;Javier Vicario Dr.;Nagatoshi Koumura Dr.;CoenraadR. vandenBrom Dr.;Auke Meetsma Dr. ;BenL. Feringa Dr.
Chemistry - A European Journal 2008 Volume 14( Issue 36) pp:11610-11622
Publication Date(Web):
DOI:10.1002/chem.200800814
Abstract
We report the synthesis of unidirectional light-driven rotary molecular motors based on chiral overcrowded alkenes and their immobilisation on the surface of gold nanoparticles through two anchors. Using a combination of 1H and 13C NMR, UV/Vis and CD spectroscopy, we show that these motors preserve their photochemical and thermal behaviour after they have been attached to gold nanoparticles. Furthermore, we describe the synthesis of 2H- and 13C-labelled derivatives that were used to verify the unidirectionality of the rotary cycle of these motors both in solution and while grafted to gold nanoparticles. Taken together, these data support the conclusion that these motors maintain their unidirectional rotary cycle when grafted to the surface of small (ca. 2 nm) gold nanoparticles. Thus, continuous irradiation of the system under appropriate conditions leads to unidirectional rotation of the upper half of the molecules relative to the entire nanoparticle.
Co-reporter:Martin Klok Drs.;Martin Walko;EdzardM. Geertsema Dr.;Nopporn Ruangsupapichat;JosC.M. Kistemaker;Auke Meetsma Dr. ;BenL. Feringa Dr.
Chemistry - A European Journal 2008 Volume 14( Issue 35) pp:11183-11193
Publication Date(Web):
DOI:10.1002/chem.200800969
Abstract
The introduction of dibenzocyclohepten-5-ylidene as part of a unidirectional light-driven molecular motor allows a more complete picture of the pathway of thermal helix inversion to be developed. The most stable conformation is similar to that found in related motors in that it has, overall, an anti-folded structure with the substituent at the stereogenic centre adopting an axial orientation. Photochemical cis/trans isomerisation at −40 °C results in the formation of an isomer in a syn-folded conformation with the methyl group in an axial orientation. This contrasts with previous studies on related molecular rotary motors. The conformation of the higher energy intermediate typically observed for this class of compound is the anti-folded conformation, in which the methyl group is in an equatorial orientation. This conformation is available through an energetically uphill upper half ring inversion of the observed photochemical product. However, this pathway competes with a second process that leads to the more stable anti-folded conformation in which the methyl group is oriented axially. It has been shown that the conformations and pathways available for second-generation molecular motors can be described by using similar overall geometries. Differences in the metastable high-energy species are attributable to the relative energy and position on the reaction coordinate of the transition states. Kinetic studies on these new molecular motors thus provide important insights into the conformational dynamics of the rotation cycle.
Co-reporter:Eva Casas-Arce Dr.;Bjorn terHorst;BenL. Feringa Dr. ;AdriaanJ. Minnaard Dr.
Chemistry - A European Journal 2008 Volume 14( Issue 14) pp:4157-4159
Publication Date(Web):
DOI:10.1002/chem.200800243
Co-reporter:Christoph Stock Dr.;Nicolas Heureux Dr.;WesleyR. Browne Dr. ;BenL. Feringa Dr.
Chemistry - A European Journal 2008 Volume 14( Issue 10) pp:3146-3153
Publication Date(Web):
DOI:10.1002/chem.200701227
Abstract
A general approach for the easy functionalization of bare silica and glass surfaces with a synthetic manganese catalyst is reported. Decomposition of H2O2 by this dinuclear metallic center into H2O and O2 induced autonomous movement of silica microparticles and glass micro-sized fibers. Although several mechanisms have been proposed to rationalise movement of particles driven by H2O2 decomposition to O2 and water (recoil from O2 bubbles,36, 45 interfacial tension gradient37–42), it is apparent in the present system that ballistic movement is due to the growth of O2 bubbles.
Co-reporter:Ewold W. Dijk, Ben L. Feringa, Gerard Roelfes
Tetrahedron: Asymmetry 2008 Volume 19(Issue 20) pp:2374-2377
Publication Date(Web):20 October 2008
DOI:10.1016/j.tetasy.2008.10.004
DNA-bound copper(II) complexes serve as catalysts for the hydrolytic kinetic resolution of 2-pyridyloxiranes in water. Selectivity factors of up to 2.7 were achieved, indicating a chirality transfer of DNA to epoxides via a coordinated metal ion.Figure optionsDownload full-size imageDownload as PowerPoint slidetrans-2-[(2S,3S)-3-Phenyloxiranyl]pyridineC13H11NOEe = >95% ee[α]D20=-275 (c 3 × 10−3, EtOH)Source of chirality: preparative chiral HPLCAbsolute configuration: (2S,3S)
Co-reporter:Adriaan J. Minnaard;Klaas Bouwmeester;Francine Govers;Syuzanna R. Harutyunyan;Zhijian Zhao;Tim den Hartog
PNAS 2008 Volume 105 (Issue 25 ) pp:8507-8512
Publication Date(Web):2008-06-24
DOI:10.1073/pnas.0709289105
A Phytophthora mating hormone with an array of 1,5-stereogenic centers has been synthesized by using our recently developed methodology
of catalytic enantioselective conjugate addition of Grignard reagents. We applied this methodology in a diastereo- and enantioselective
iterative route and obtained two of the 16 possible stereoisomers of Phytophthora hormone α1. These synthetic stereoisomers induced the formation of sexual spores (oospores) in A2 mating type strains of
three heterothallic Phytophthora species, P. infestans, P. capsici, and P. nicotianae but not in A1 mating type strains. The response was concentration-dependent, and the oospores were viable. These results
demonstrate that the biological activity of the synthetic hormone resembles that of the natural hormone α1. Mating hormones
are essential components in the sexual life cycle of a variety of organisms. For plant pathogens like Phytophthora, sexual reproduction is important as a source of genetic variation. Moreover, the thick-walled oospores are the most durable
propagules that can survive harsh environmental conditions. Sexual reproduction can thus greatly affect disease epidemics.
The availability of synthetic compounds mimicking the activity of Phytophthora mating hormone will be instrumental for further unravelling sexual reproduction in this important group of plant pathogens.
Co-reporter:T. Kudernac;D. Dulić;A. Pužys;B. L. Feringa;B. J. van Wees
Advanced Materials 2007 Volume 19(Issue 19) pp:2898-2902
Publication Date(Web):28 AUG 2007
DOI:10.1002/adma.200700161
The ring-opening process in diarylethene molecular switches is suppressed with decreasing temperature, leading to the complete absence of the photoreaction below a cutoff temperature. By contrast, the reverse ring-closure process shows no significant temperature dependence above 115 K. Reversibility of the photoprocesses can be thus controlled by temperature (see figure).
Co-reporter:D. Pijper;M. M. Pollard;M. Klok;B. L. Feringa
Advanced Functional Materials 2007 Volume 17(Issue 5) pp:718-729
Publication Date(Web):27 FEB 2007
DOI:10.1002/adfm.200601025
One of the key challenges in taking light-driven unidirectional rotary motors from discovery to application is to increase the rate of rotation. Herein, we review our ongoing efforts to address this issue by meticulous improvement to the molecular design. To accelerate the rotary cycle, we have focused primarily on the rate-limiting thermal isomerization step. This has been a fascinating and formidable objective, given that the first system we reported had a half-life of over one week at room temperature! Our research has ultimately led to the construction of a unidirectional rotary molecular motor with a cycle 108 times faster than the original; that is, it can in principle function at 44 rotations per second.
Co-reporter:
Nature Protocols 2007 2(6) pp:
Publication Date(Web):2007-05-31
DOI:10.1038/nprot.2007.196
The structure and function of proteins can be explored by using different methods. For instance, molecular biology toolbox provides site-directed or random mutagenesis techniques to create variations of the protein. The major advantage of such methods is their generality and specificity. The range of variations, however, is limited to the naturally available 20 amino acids or the small number of non-natural amino acids, which have been inserted biosynthetically. To introduce variations, which confer features not achievable with natural amino acids, chemical modification provides a complementary approach1. This is especially true when a combination of properties, such as reversibility, tunability, target specificity and sensitivity to external stimuli, is desired all at the same time. There have been many successful examples of chemical modification of proteins to explore new functionalities2, 3, 4, 5, 6, 7, 8.A particularly important property to control at the molecular level is transport across barriers such as biological membranes, as such control could easily lead to attractive applications, for example, in sensing and detecting, and in drug delivery. Here, we describe the rational design and engineering of a semisynthetic α-helical channel protein that is able to sense changes in light and to convert this signal into the opening of a pore.The protein is one of the best-studied channel proteins: mechanosensitive channel of large conductance, MscL, from Escherichia coli. In nature, it functions as a safety valve to protect the bacterial cell against severe osmotic downshifts9. A sudden influx of water results in the buildup of turgor pressure, generating tension in the membrane. Above a certain threshold value, the pressure results in the opening of the large, nonselective pore of MscL, which allows efflux of ions, small solutes and even some small proteins to prevent cell lysis10, 11.MscL is a homopentamer with two transmembrane helices, M1 and M2, per subunit. The actual pore of the channel is formed by five M1 helices. Although the channel is tightly closed under normal conditions, it opens intermittently in response to tension in the membrane as if 'flickering' between the open and closed states. On the other hand, the introduction of polar or charged amino acids at the narrow hydrophobic pore constriction, for example, the 22nd amino-acid position, causes hydration of the pore and weakening of the hydrophobic and van der Waals forces responsible for the close packing of the M1 helices in the closed state. This leads to spontaneous opening of the channel again in the form of flickering between the open and closed states12, 13.In the work on which the present protocol is based, we first modified the 22nd amino-acid position of MscL by site-directed mutagenesis into a cysteine to create a unique target site, and then we specifically addressed this site with rationally designed small chemical compounds. The first compound, iodoacetic acid 4,5-dimethoxy-2-nitrobenzyl ester (3) (Fig. 1a), is designed to convert MscL channel protein into an irreversible light-activated nanovalve. After its covalent attachment to each subunit of MscL in the dark, it stays neutral and therefore MscL stays closed. However, illumination with UV light results in a photolysis reaction and MscL acquires negative charges in its hydrophobic pore region, which results in the opening of a nanovalve (Fig. 1b).The second compound is 3′,3′-dimethyl-1′-(2-iodoacetyloxyethyl)-6-nitrospiro[2H-1-benzopyran-2,2′-indoline] (6) (Fig. 2a). Modification of an MscL channel with compound 6 creates a reversible light-activated nanovalve. In this case, the channel stays closed in the dark owing to the absence of charge of the attached compound. Illumination with UV light triggers channel activity via the charge formation inside the pore. However, subsequent irradiation with visible light deactivates the channel as the compound (6) reverts to its uncharged state (Fig. 2b).The proper functioning of the modified proteins was assessed at single-molecule level by measuring the ionic current flowing through this modified channel in patch-clamp experiments. To test the usefulness of the light-addressable nanovalve in controlling the exchange of solutes across a membrane, we conducted classical efflux experiments with a liposomal system containing a self-quenching fluorescent dye, calcein14. Because of the high local concentration inside the liposomes, the fluorescence intensity of calcein is low, but release from these liposomes results in dilution of the dye and consequently a large increase in the fluorescence signal. Here, we adapted this method to study the activity of MscL under isoosmotic conditions. We reconstituted the modified photoactive MscL into liposomes and followed the change of the fluorescence signal in response to channel UV activation15.Gaining control over MscL channel activity as presented here is a valuable tool for further investigation and understanding of the mechanism of the channel function. In addition, such channels can also serve as controlled valves to release or mix the contents at a desired location, time and dosage, for example, in micro-/nano-sensory and delivery devices. Recently, by designing different types of compounds, we managed to modify the MscL channel into a pH sensor16. The pH sensitivity interval of the channel could be tuned by varying the pK
a and hydrophobicity of the compounds. Further control over the timing, location and amplitude of the channel opening was obtained through the use of caged modulators, in which the pH modulator is protected by a photo-removable group. Channels thus modified are inert to the environmental pH until exposure to long-wavelength UV, at which point pH responsiveness is immediately regained. This additional tool results in a higher degree of flexibility and precision with respect to external control over the channel opening and the associated release of molecules from carrier devices.
where I
t is the measured fluorescence intensity at a given time, I
0 is the initial fluorescence intensity, which is caused by the initial free calcein in the sample before stimulation of the channel and the residual fluorescence resulting from the quenched liposomal calcein, and I
100 is the fluorescence intensity from total liposomal calcein, which is obtained from bursting all liposomes by the addition of Anapoe-X-100.Steps 1–12, 21 hSteps 13–29, 3 hSteps 30–37, 2 hSteps 38–41, 2 hSteps 42–47, 6 hStep 48A, 48 hStep 48B, 1 hTroubleshooting advice can be found in Table 1.
A typical real-time fluorescent efflux assay is reported in Figure 3. In Figure 3a (rows I–III) are reported raw fluorescence data. In Figure 3b (rows I–III) are reported % release data obtained from the conversion of fluorescence data by using the above equation. This allows comparison of individual data with each other irrespective of the amount of liposomes used in each efflux experiment.In row I are reported fluorescence data monitoring calcein release from proteoliposomes embedded with unmodified MscL (MscL-G22C) following addition of MTSET (see Step 48B(v)). The inset shows enlarged fluorescence signal during channel activation procedure. First, the fluorescence of liposomes was measured. Then the lid of the cuvette compartment was opened (a), 1 mM final concentration of MTSET was added into the cuvette, and, after the suspension was mixed, the lid was closed (b). Activity was then followed (c). After fluorescence leveled off (~450 s), the lid was opened once more in order to add detergent to burst all the liposomes. The lid was closed and the total calcein fluorescence was measured (d).In row II are reported light-induced release data from proteoliposomes that are embedded with modified MscL (MscL-G22C-compound 3). The inlet shows one light/dark cycle. After the initial measurement of the fluorescence, the lid of the cuvette compartment was opened and the cuvette was taken out, the fluorescence measurement was paused (a). The cuvette was placed 1.5 cm away from a hand-held UV lamp and illuminated with light of wavelength of 366 nm for 30 s. The content of the cuvette was mixed by pipetting and the cuvette was placed back in the fluorometer. The lid of the compartment was closed and recording resumed (b). Fluorescence was recorded for 15 s (c) and the same cycle repeated to reach a total 5 min of illumination. At the end of the measurements (~280 s), detergent was added into the cuvette and total calcein fluorescence was measured (d).In row III are reported negative control data monitoring calcein release from proteoliposomes that are embedded with modified MscL (MscL-G22C-compound 3) in the dark.
Co-reporter:Nathalie Katsonis, Monika Lubomska, Michael M. Pollard, Ben L. Feringa, Petra Rudolf
Progress in Surface Science 2007 Volume 82(7–8) pp:407-434
Publication Date(Web):2007
DOI:10.1016/j.progsurf.2007.03.011
Recent advances in synthetic methods and analysis techniques provide a basis for the construction and characterization of organized arrays of molecular switches and motors on surfaces. Among them, molecular systems that can be controlled by light are particularly promising because of their ease of addressability, fast response times and the compatibility of light with a wide range of condensed phases. The aim of this contribution is to highlight selected recent advances in building functional monolayers of light-activated molecules. Special focus is given to monolayers of molecules whose collective switching properties have been harnessed to produce macroscopic effects. The design, structure, and function of monolayers composed of bistable photochromic switches, which can control chirality, wettability, conductivity and self-assembly are described. A recent report on the successful demonstration of light-driven rotary motors functioning while grafted on gold surfaces will also be discussed, followed by a brief conclusion.
Co-reporter:Tieme A. van den Berg, Ben L. Feringa and Gerard Roelfes
Chemical Communications 2007 (Issue 2) pp:180-182
Publication Date(Web):23 Oct 2006
DOI:10.1039/B613469F
Covalently linking two single strand DNA cleaving agents resulted in a new biomimetic binuclear iron complex capable of effecting oxidative double strand DNA cleavage.
Co-reporter:Bjorn ter Horst, Ben L. Feringa and Adriaan J. Minnaard
Chemical Communications 2007 (Issue 5) pp:489-491
Publication Date(Web):06 Nov 2006
DOI:10.1039/B612593J
The first catalytic asymmetric total synthesis of mycocerosic acid was achieved via the application of iterative enantioselective 1,4-addition reactions and allows for the efficient construction of 1,3-polymethyl arrays with full stereocontrol; further exemplified by the synthesis of tetramethyl-decanoic acid, a component of the preen-gland wax of the graylag goose, Anser anser.
Co-reporter:Martin Walko and Ben L. Feringa
Chemical Communications 2007 (Issue 17) pp:1745-1747
Publication Date(Web):03 Apr 2007
DOI:10.1039/B702264F
All three atropisomers of photochromic diarylethenes were isolated for the first time and the stereospecific photochemical switching process studied by UV–vis and CD spectroscopy.
Co-reporter:Stephen P. Fletcher, Richard B. C. Jagt and Ben L. Feringa
Chemical Communications 2007 (Issue 25) pp:2578-2580
Publication Date(Web):27 Apr 2007
DOI:10.1039/B702882B
The sublimation of low ee amino acids was examined while exploring simple mechanisms by which high ee amino acids can be generated under conditions that exist in space; significant enantioenrichment of a variety of amino acids by sublimation was achieved.
Co-reporter:Radovan Šebesta;M. Gabriella Pizzuti;Adriaan J. Minnaard;Ben L. Feringa
Advanced Synthesis & Catalysis 2007 Volume 349(Issue 11-12) pp:
Publication Date(Web):27 AUG 2007
DOI:10.1002/adsc.200600272
The enantioselective, copper/phosphoramidite-catalyzed 1,4-addition of dialkylzinc reagents to acyclic dienones is described. The products of this reaction, obtained with enantioselectivities of up to 95 %, can be further functionalized by a second conjugate addition, or employed in an enolate trapping, ring-closing metathesis protocol.
Co-reporter:Johannes H. Hurenkamp, Wesley R. Browne, Ramūnas Augulis, Audrius Pugžlys, Paul H. M. van Loosdrecht, Jan H. van Esch and Ben L. Feringa
Organic & Biomolecular Chemistry 2007 vol. 5(Issue 20) pp:3354-3362
Publication Date(Web):17 Sep 2007
DOI:10.1039/B711681K
The synthesis and characterisation of a novel coumarin donor–perylene bisimide acceptor light-harvesting system is reported, in which an energy-transfer efficiency of >99% is achieved. Comparison of the excited-state properties of the donor–acceptor system with model compounds revealed that although the photophysical properties of the perylene bisimide acceptor unit are affected considerably by the nature of the substituent at the imide positions and the solvent employed, through-bond interaction between the donor and acceptor units is negligible. Energy transfer in the present system can be described as occurring via a through-space energy-transfer mechanism. Careful consideration of the redox properties of the donor relative to the acceptor units allows for avoidance of potentially deleterious excited-state electron-transfer processes.
Co-reporter:Jetsuda Areephong, Wesley R. Browne and Ben L. Feringa
Organic & Biomolecular Chemistry 2007 vol. 5(Issue 8) pp:1170-1174
Publication Date(Web):19 Mar 2007
DOI:10.1039/B702417G
The synthesis and photochemical characterization of bicomponent molecular switches based on covalently tethered dithienylethene photochromes is described. Both photochromic units undergo complete switching between the fully cyclised and fully non-cyclised states despite a significant level of electronic communication between the individual units and their proximity.
Co-reporter:Robert M. Haak, Chiara Tarabiono, Dick B. Janssen, Adriaan J. Minnaard, Johannes G. de Vries and Ben L. Feringa
Organic & Biomolecular Chemistry 2007 vol. 5(Issue 2) pp:318-323
Publication Date(Web):11 Dec 2006
DOI:10.1039/B613937J
3-Alkenyl and heteroaryl chloroalcohols have been obtained in excellent enantiomeric excess (>99%) by enzymatic kinetic resolution using the haloalcohol dehalogenase HheC. Yields were close to the theoretical maximum for all substrates employed. Furthermore, the applicability of this methodology on multigram scale has been established.
Co-reporter:Tim denHartog;SyuzannaR. Harutyunyan Dr.;Daniel Font;AdriaanJ. Minnaard Dr. ;BenL. Feringa Dr.
Angewandte Chemie International Edition 2007 Volume 47( Issue 2) pp:398-401
Publication Date(Web):
DOI:10.1002/anie.200703702
Co-reporter:Michael M. Pollard Dr.;Monika Lubomska Dr.;Petra Rudolf ;Ben L. Feringa
Angewandte Chemie International Edition 2007 Volume 46(Issue 8) pp:
Publication Date(Web):5 JAN 2007
DOI:10.1002/anie.200603618
All for one: The relative unidirectional rotary motion of light-driven molecular motors in solution was transformed into controlled rotary motion in a monolayer on quartz. The correlation of the CD spectroscopic behavior of the monolayer with its solution counterpart suggests that the motors retain their function when grafted to the surface.
Co-reporter:Dirk Pijper;Ben L. Feringa
Angewandte Chemie International Edition 2007 Volume 46(Issue 20) pp:
Publication Date(Web):5 APR 2007
DOI:10.1002/anie.200604941
Twisted sisters: Transmission of chirality from a light-driven rotary molecular motor to the macromolecular level of a polyisocyanate allows fully reversible control of the preferred helical sense of the polymer backbone (see picture).
Co-reporter:Alex F. Meindertsma, Michael M. Pollard, Ben L. Feringa, Johannes G. de Vries, Adriaan J. Minnaard
Tetrahedron: Asymmetry 2007 Volume 18(Issue 24) pp:2849-2858
Publication Date(Web):10 December 2007
DOI:10.1016/j.tetasy.2007.11.020
This paper describes the enantioselective hydrogenation of vinylthioethers. We show that thioether derivatives of maleic esters can be hydrogenated with full conversion and up to 60% ee, and that α-thioether cinnamic acids can be hydrogenated in 51% ee with modest conversion.Figure optionsDownload full-size imageDownload as PowerPoint slide
Co-reporter:Michael M. Pollard Dr.;Monika Lubomska Dr.;Petra Rudolf ;Ben L. Feringa
Angewandte Chemie 2007 Volume 119(Issue 8) pp:
Publication Date(Web):5 JAN 2007
DOI:10.1002/ange.200603618
Alle zusammen: Aus der relativen unidirektionalen Drehbewegung lichtgetriebener molekularer Motoren in Lösung wurde in einer Monoschicht auf Quarz eine kontrollierte Drehbewegung. Die Korrelation der CD-spektroskopischen Eigenschaften von Monoschicht und Lösung legt nahe, dass die Motoren ihre Funktion beibehalten, wenn sie auf der Oberfläche fixiert sind.
Co-reporter:Dirk Pijper;Ben L. Feringa
Angewandte Chemie 2007 Volume 119(Issue 20) pp:
Publication Date(Web):5 APR 2007
DOI:10.1002/ange.200604941
Verdrehte Geschwister: Durch die Übertragung der Chiralität von einem lichtgetriebenen molekularen Drehmotor auf die makromolekulare Ebene eines Polyisocyanats lässt sich der bevorzugte Helixsinn des Polymerrückgrats vollständig reversibel steuern (siehe Bild).
Co-reporter:
Nature Nanotechnology 2006 1(1) pp:
Publication Date(Web):
DOI:10.1038/nnano.2006.45
In this review we chart recent advances in what is at once an old and very new field of endeavour — the achievement of control of motion at the molecular level including solid-state and surface-mounted rotors, and its natural progression to the development of synthetic molecular machines. Besides a discussion of design principles used to control linear and rotary motion in such molecular systems, this review will address the advances towards the construction of synthetic machines that can perform useful functions. Approaches taken by several research groups to construct wholly synthetic molecular machines and devices are compared. This will be illustrated with molecular rotors, elevators, valves, transporters, muscles and other motor functions used to develop smart materials. The demonstration of molecular machinery is highlighted through recent examples of systems capable of effecting macroscopic movement through concerted molecular motion. Several approaches to illustrate how molecular motor systems have been used to accomplish work are discussed. We will conclude with prospects for future developments in this exciting field of nanotechnology.
Co-reporter:N. Katsonis;M. Walko;T. Kudernac;B. J. van Wees;S. J. van der Molen;B. L. Feringa
Advanced Materials 2006 Volume 18(Issue 11) pp:1397-1400
Publication Date(Web):5 MAY 2006
DOI:10.1002/adma.200600210
Light-controlled conductance switching of diarylethenes attached to Au(111) is reported (see figure). First, scanning tunneling microscopy is used to demonstrate reversible photoswitching for individual molecules. Second, reversible switching in self-assembled monolayers is established by means of optical spectroscopy.
Co-reporter:Fernando López, Anthoni W. van Zijl, Adriaan J. Minnaard and Ben L. Feringa
Chemical Communications 2006 (Issue 4) pp:409-411
Publication Date(Web):05 Dec 2005
DOI:10.1039/B513887F
A catalyst system able to perform highly enantioselective Cu-catalysed allylic alkylations with Grignard reagents is described.
Co-reporter:Gerard Roelfes, Arnold J. Boersma and Ben L. Feringa
Chemical Communications 2006 (Issue 6) pp:635-637
Publication Date(Web):06 Jan 2006
DOI:10.1039/B516552K
A new approach to DNA-based asymmetric catalysis is presented, which gives rise to very high enantioselectivities (up to 99% ee) in the copper catalyzed Diels–Alder reaction in water.
Co-reporter:Tibor Kudernac, Sense Jan van der Molen, Bart J. van Wees and Ben L. Feringa
Chemical Communications 2006 (Issue 34) pp:3597-3599
Publication Date(Web):02 Aug 2006
DOI:10.1039/B609119A
Photochromic studies of diarylethenes with their switching unit linked to the surface of gold nanoparticles via a conjugated aromatic spacer show linker-dependent switching behavior.
Co-reporter:Jetsuda Areephong, Wesley R. Browne, Nathalie Katsonis and Ben L. Feringa
Chemical Communications 2006 (Issue 37) pp:3930-3932
Publication Date(Web):09 Aug 2006
DOI:10.1039/B608502D
Molecular memory devices based on dithienylethene switch modified ITO electrodes undergo reversible ring opening/closing both photo- and electro-chemically with non-destructive electrochemical readout.
Co-reporter:Sébastien L. X. Martina, Richard B. C. Jagt, Johannes G. de Vries, Ben L. Feringa and Adriaan J. Minnaard
Chemical Communications 2006 (Issue 39) pp:4093-4095
Publication Date(Web):22 Aug 2006
DOI:10.1039/B609453H
The catalytic asymmetric 1,2-addition of a series of arylboronic acids to 2,2,2-trifluoroacetophenones is described with high isolated yields (up to 96%) and good enantioselectivities (up to 83% ee) using a rhodium(I)/phosphoramidite catalyst.
Co-reporter:Richard B. C. Jagt, Patrick Y. Toullec, Johannes G. de Vries, Ben L. Feringa and Adriaan J. Minnaard
Organic & Biomolecular Chemistry 2006 vol. 4(Issue 5) pp:773-775
Publication Date(Web):31 Jan 2006
DOI:10.1039/B518311A
Phosphoramidites are effective chiral ligands in the rhodium catalyzed addition of arylboronic acids to aldehydes providing up to 75% enantioselectivity and up to 96% isolated yield.
Co-reporter:Kingo Uchida, Martin Walko, Jaap J. D. de Jong, Shin-ichiro Sukata, Seiya Kobatake, Auke Meetsma, Jan van Esch and Ben L. Feringa
Organic & Biomolecular Chemistry 2006 vol. 4(Issue 6) pp:1002-1006
Publication Date(Web):10 Feb 2006
DOI:10.1039/B517370A
Upon UV irradiation of the hydrogen-bond confined crystal state of a dithienylhexafluorocyclopentene with (R)-N-phenylethylamide substituents, the photochemical cyclization reaction proceeds diastereoselectively to form the coloured, closed-ring isomer with 97% de.
Co-reporter:Gareth P. Howell, Adriaan J. Minnaard and Ben L. Feringa
Organic & Biomolecular Chemistry 2006 vol. 4(Issue 7) pp:1278-1283
Publication Date(Web):17 Feb 2006
DOI:10.1039/B518165H
Using modular, monodentate phosphoramidite ligands, enantioselective palladium catalysed diethylzinc mediated allylation of aldehydes was achieved. The scope of the asymmetric C–C bond formation was investigated with respect to nucleophilic and electrophilic components and an alternative reaction mechanism is proposed based on our findings.
Co-reporter:Jaap J. D. de Jong, Wesley R. Browne, Martin Walko, Linda N. Lucas, Lindsay J. Barrett, John J. McGarvey, Jan H. van Esch and Ben L. Feringa
Organic & Biomolecular Chemistry 2006 vol. 4(Issue 12) pp:2387-2392
Publication Date(Web):2006/05/22
DOI:10.1039/B603914F
The non-destructive readout of photochromic memory materials based on the dithienylethene unit both by IR spectroscopy and Raman scattering is explored. A representative series of C5-substituted thienyl hexahydro- and hexafluoro-cyclopentene based photochromes was investigated to explore the effect and potential usefulness of substitution for the development of multicomponent memory materials. The effect of the deposition method on the photochemistry of solid materials containing photochromic dithienylcyclopentene switches was also explored. Photoconversion in the solid state to the closed form was found to be low when starting from the open form, but, in contrast, ring opening to the open state from the closed form was found to be complete. The effect was found to be due to inner filter rather than conformational phenomena. Characteristic vibrational bands for the central dithienyl core are assigned and a comparison made of the vibrational spectroscopic properties of the perhydro- and perfluoro switches. The data enable the determination of the photoconversion achievable in the solid state as well as some assessment of the influence of the deposition method on the photoconversion. The potential of Raman spectroscopy as a method of achieving non-destructive optical readout is demonstrated through the large differences in absolute Raman scattering intensity between the open and closed states, when monitored at wavelengths which do not result in photochemical ring opening.
Co-reporter:Edzard M. Geertsema, Anne Marie Schoevaars, Auke Meetsma and Ben L. Feringa
Organic & Biomolecular Chemistry 2006 vol. 4(Issue 22) pp:4101-4112
Publication Date(Web):09 Oct 2006
DOI:10.1039/B609271C
The concept of bisthioxanthylidene biscrown ethers as potential stereodivergent chiral ligands in asymmetric synthesis is introduced. Substituted bisthioxanthylidenes may be chiral and can exist as stable enantiomers due to their folded structure. As a result, both a right-handed helix (P) and left-handed helix (M) are present in this type of molecule. This offers the unique possibility to construct two crown ether moieties, attached to the same molecule, of which one exhibits (P)-helicity and the other (M)-helicity. When the crown ether moieties differ in size they can be complexed selectively with a base containing a cation of appropriate diameter. In this manner the (P)-helix and the (M)-helix can be activated selectively to serve as a chiral environment for base catalyzed asymmetric synthesis. Thus, we envisioned the new concept of a single chiral ligand to separately synthesize two enantiomers of a chiral product just by varying the added base. For this purpose, four new bisthioxanthylidene monocrown ethers and two new bisthioxanthylidene biscrown ethers were synthesized. Two biscrowns and two monocrowns were separated into their respective enantiomers (HPLC) and optical data (UV and CD) were collected to ensure stability of enantiomers at ambient temperatures. Ion complexation of one mono- and two biscrown ethers with potassium and sodium cations was investigated.
Co-reporter:Edzard M. Geertsema;Rob Hoen;Auke Meetsma
European Journal of Organic Chemistry 2006 Volume 2006(Issue 16) pp:
Publication Date(Web):7 JUN 2006
DOI:10.1002/ejoc.200600280
Overcrowded alkenes are a fascinating class of inherent dissymmetric molecules that attract considerable interest for instance as chiroptical molecular switches and unidirectionally rotary motors. A practical synthesis route towards enantiomerically pure overcrowded alkenes is an important goal. We report here the development of an asymmetric synthesis of bi(thio)xanthylidenes. The upper and lower part of the desired alkenes were first coupled to a chiral template. Intramolecular coupling with partial stereocontrol, separation of diastereoisomers and subsequent removal of the templates gave stable enantiomers of bithioxanthylidene. The absolute configuration was determined by X-ray analysis. In the case of bixanthylidene, stereocontrol during the intramolecular coupling reaction was complete, and it was found that the presence of a binaphthol bridging unit prevents the fast racemization process of the bixanthylidene, which it normally exhibited at ambient temperature. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2006)
Co-reporter:Rienk Eelkema Dr.;Ben L. Feringa Dr.
Chemistry – An Asian Journal 2006 Volume 1(Issue 3) pp:
Publication Date(Web):10 AUG 2006
DOI:10.1002/asia.200600116
By using a chiral molecular motor as a dopant in a cholesteric liquid-crystalline film, fully reversible control of the reflection color of this film across the entire visible spectrum is possible. The large difference in helical twisting power between the two isomeric forms of the motor allows efficient light- and heat-induced switching of the helicity of the cholesteric liquid-crystal superstructure.
Co-reporter:Armaǧan Koçer Dr.;Martin Walko;Erna Bulten;Erik Halza Dr.;Wim Meijberg Dr.
Angewandte Chemie 2006 Volume 118(Issue 19) pp:
Publication Date(Web):4 APR 2006
DOI:10.1002/ange.200503403
Kanal öffne dich! Chemische Modulatoren verwandeln ein natürliches Kanalprotein in ein pH-gesteuertes Nanoventil. Der pH-Bereich, die Empfindlichkeit und die Aktivierung des Ventils durch Öffnen des Kanals lassen sich gezielt durch die Modulatoren beeinflussen. Derartige Ventile könnten den Inhalt von Liposomen zeit- und dosierungsgenau an einem Zielort freisetzen, etwa in Mikro- oder Nano-Sensoren oder -Transportern (siehe Bild).
Co-reporter:Richard B. C. Jagt;Patrick Y. Toullec Dr.;Danny Geerdink;Johannes G. de Vries Dr. Dr.;Adriaan J. Minnaard Dr.
Angewandte Chemie 2006 Volume 118(Issue 17) pp:
Publication Date(Web):23 MAR 2006
DOI:10.1002/ange.200504309
Kleine Schutzgruppe – große Wirkung: Die Titelreaktionen führen nach mikrowellenunterstützter Abspaltung der N,N-Dimethylsulfamoyl-Schutzgruppe zu chiralen (Diarylmethyl)aminen. Bei Verwendung von 1 Mol-% Katalysator und 1.3 Äquivalenten Arylboronsäure werden die Produkte mit bis 98 % Ausbeute und 95 % ee isoliert. acac=Acetylacetonat, eth=Ethen.
Co-reporter:Richard B. C. Jagt;Patrick Y. Toullec Dr.;Danny Geerdink;Johannes G. de Vries Dr. Dr.;Adriaan J. Minnaard Dr.
Angewandte Chemie International Edition 2006 Volume 45(Issue 17) pp:
Publication Date(Web):23 MAR 2006
DOI:10.1002/anie.200504309
Small but effective: The title reaction, after microwave-assisted removal of the N,N-dimethylsulfamoyl protecting group, leads to chiral diarylmethyl amines. The use of 1 mol % catalyst and 1.3 equivalents of aryl boronic acid results in excellent yields (up to 98 %) and enantioselectivities (up to 95 % ee) of the isolated products. acac=acetylacetonate; eth=ethylene.
Co-reporter:Arma&x1e7;an Koçer, Martin Walko, Erna Bulten, Erik Halza, Ben L. Feringa,Wim Meijberg
Angewandte Chemie International Edition 2006 45(19) pp:3126-3130
Publication Date(Web):
DOI:10.1002/anie.200503403
Co-reporter:Armağan Koçer;Martin Walko;Wim Meijberg
Science 2005 Vol 309(5735) pp:755-758
Publication Date(Web):29 Jul 2005
DOI:10.1126/science.1114760
Abstract
Toward the realization of nanoscale device control, we report a molecular valve embedded in a membrane that can be opened by illumination with long-wavelength ultraviolet (366 nanometers) light and then resealed by visible irradiation. The valve consists of a channel protein, the mechanosensitive channel of large conductance (MscL) from Escherichia coli, modified by attachment of synthetic compounds that undergo light-induced charge separation to reversibly open and close a 3-nanometer pore. The system is compatible with a classical encapsulation system, the liposome, and external photochemical control over transport through the channel is achieved.
Co-reporter:Javier Vicario, Rienk Eelkema, Wesley R. Browne, Auke Meetsma, René M. La Crois and Ben L. Feringa
Chemical Communications 2005 (Issue 31) pp:3936-3938
Publication Date(Web):31 May 2005
DOI:10.1039/B505092H
A molecular approach to the powering of multi-component nano-devices capable of autonomous translational and rotational motion through the conversion of chemical to kinetic energy is reported.
Co-reporter:Radovan Šebesta, Maria Gabriella Pizzuti, Arnold J. Boersma, Adriaan J. Minnaard and Ben L. Feringa
Chemical Communications 2005 (Issue 13) pp:1711-1713
Publication Date(Web):02 Feb 2005
DOI:10.1039/B417727D
The first, highly enantioselective, copper/phosphoramidite-catalyzed conjugate addition of dialkylzinc reagents to N-substituted 2,3-dehydro-4-piperidones is described.
Co-reporter:Javier Vicario, Auke Meetsma and Ben L. Feringa
Chemical Communications 2005 (Issue 47) pp:5910-5912
Publication Date(Web):01 Nov 2005
DOI:10.1039/B507264F
Substitution of a 6-membered by a 5-membered ring upper half in the light driven second generation molecular motors resulted in a dramatic increase of the speed of rotation.
Co-reporter:Maaike de Loos, Arianna Friggeri, Jan van Esch, Richard M. Kellogg and Ben L. Feringa
Organic & Biomolecular Chemistry 2005 vol. 3(Issue 9) pp:1631-1639
Publication Date(Web):21 Mar 2005
DOI:10.1039/B500837A
A new class of efficient hydrogelators has been developed by a simple modification of the peripheral substituents of cyclohexane bis-urea organogelators with hydrophilic hydroxy or amino functionalities. These bis-urea hydrogelators were synthesised in two or three steps using an alternative procedure to the common isocyanate method. Gelation was obtained with organic solvents, water and strongly basic aqueous solutions like 25% ammonia. Hydrogelation was found to depend on a delicate balance between the hydrophobicity of the alkyl chains, hydrophilicity of the terminal substituents and the enantiomeric purity of the compound. The hydrogels consisted of a network of fibers, in which all urea groups are involved in intermolecular hydrogen bonding. Most likely, gelation is driven by hydrophobic interactions of the methylene units, whereas hydrogen bond formation between the urea groups provides the necessary anisotropy of the aggregation and the high thermal stability of the gels.
Co-reporter:Ruben P. van Summeren, Ben L. Feringa and Adriaan J. Minnaard
Organic & Biomolecular Chemistry 2005 vol. 3(Issue 14) pp:2524-2533
Publication Date(Web):15 Jun 2005
DOI:10.1039/B505980A
New approaches towards the synthesis of the C1′–C16′ side-chain of mycolactones A and B from Mycobacterium ulcerans are reported. Chiral building block 4
(Fig. 2) with the correct stereochemistry was obtained starting from naturally occurring monosaccharides, i.e.D-glucose or L-rhamnose. The polyunsaturated moiety 3 was synthesized in only 3 steps from 2,4-dimethylfuran. The building blocks were connected through a Sonogashira coupling resulting in the fast and convergent assembly of an 8,9-dehydro analogue 2 of the side-chain of mycolactones A and B. The synthesis of 1 is at this stage hampered by the lack of a selective partial hydrogenation protocol for alkynes embedded in a conjugated system. Alternative strategies involving palladium catalyzed sp2–sp2 coupling between C7′ and C8′ or C9′ and C10′
(Fig. 1) were also explored.
Co-reporter:Matthijs K. J. ter Wiel, Richard A. van Delden, Auke Meetsma and Ben L. Feringa
Organic & Biomolecular Chemistry 2005 vol. 3(Issue 22) pp:4071-4076
Publication Date(Web):17 Oct 2005
DOI:10.1039/B510641A
Controlled intramolecular movement and coupling of motor and rotor functions is exerted by this new molecular device. The rate of rotation of the rotor part of the molecule can be adjusted by alteration of the conformation of the motor part of the molecule. For all states of the motor part, different rates of rotation were measured for the rotor part. Conversion between the four propeller orientations was achieved by irradiation and heating.
Co-reporter:Jaap J. D. de Jong;P. Ralph Hania;Audrius Pugžlys Dr.;Linda N. Lucas Dr.;Maaike de Loos;Richard M. Kellogg Dr. Dr.;Koos Duppen Dr.;Jan H. van Esch Dr.
Angewandte Chemie International Edition 2005 Volume 44(Issue 16) pp:
Publication Date(Web):10 MAR 2005
DOI:10.1002/anie.200462500
The reversible photoconversion of self-assembling dithienylcyclopentene photochromic switches between an aggregated and nonaggregated state is manifest at the macroscopic level by a fully reversible sol–gel phase transition and results in spatially confined structure formation in an inhomogeneous optical field. The reversibility of aggregation is exploited in dynamic pattern formation (see images).
Co-reporter:Gerard Roelfes Dr. Dr.
Angewandte Chemie International Edition 2005 Volume 44(Issue 21) pp:
Publication Date(Web):21 APR 2005
DOI:10.1002/anie.200500298
A twist in catalysis! The chirality of DNA is transferred directly to a Diels–Alder reaction by using a DNA-tethered catalyst. A catalytically active copper complex with achiral ligands self-assembles with DNA to give products with up to 90 % ee, as is the case for the exo isomer of product 1.
Co-reporter:Rob Hoen;Jeroen A. F. Boogers Dr.;Heiko Bernsmann Dr.;Adriaan J. Minnaard Dr.;Auke Meetsma;Theodora D. Tiemersma-Wegman;André H. M. de Vries Dr.;Johannes G. de Vries Dr. Dr.
Angewandte Chemie International Edition 2005 Volume 44(Issue 27) pp:
Publication Date(Web):1 JUN 2005
DOI:10.1002/anie.200500784
Mixing it up: A catalytic system based on a mixed-ligand approach has been developed for the rhodium-catalyzed asymmetric hydrogenation of cinnamic acid derivatives (see scheme, cod= cycloocta-1,5-diene). It is the first time that a catalyst complex based on a heterocombination of a chiral and an achiral monodentate ligand gives dramatically higher enantioselectivity (up to 99 %) than any of the corresponding homocomplexes.
Co-reporter:Wesley R. Browne Dr.;Jaap J. D. de Jong;Tibor Kudernac;Martin Walko;Linda N. Lucas Dr.;Kingo Uchida ;Jan H. van Esch Dr. Dr.
Chemistry - A European Journal 2005 Volume 11(Issue 21) pp:
Publication Date(Web):11 AUG 2005
DOI:10.1002/chem.200500163
The electrochemical and spectroelectrochemical properties of a series of C5-substituted dithienylhexahydro- and dithienylhexafluorocyclopentenes are reported. The effect of substitution at C5 of the thienyl moiety on the redox properties is quite dramatic, in contrast to the effect on their photochemical properties. The efficiency of electrochemical switching is dependent both on the central cyclopentene unit and on the nature of the substituents, whereby electron-donating moieties favour oxidative electrochemical ring-closure and vice versa. Asymmetrically substituted dithienylcyclopentenes were investigated to explore the ring-closure process in more detail. The results indicate that electrochemically induced ring-closure occurs via the monocation of the open form. In the presence of electroactive groups at C5 of the thienyl ring (e.g., methoxyphenyl) initial oxidation of these groups is followed by intermolecular electron transfer, which drives ring-closure of the open forms.
Co-reporter:Wesley R. Browne Dr.;Jaap J. D. de Jong;Tibor Kudernac;Martin Walko;Linda N. Lucas Dr.;Kingo Uchida ;Jan H. van Esch Dr. Dr.
Chemistry - A European Journal 2005 Volume 11(Issue 21) pp:
Publication Date(Web):11 AUG 2005
DOI:10.1002/chem.200500162
The electro- and spectroelectrochemical properties of dithienylhexahydro- and dithienyhexafluorocyclopentenes are reported. The large effect of variation in the central cyclopentene moieties on the redox properties of the dithienylcyclopentenes is in striking contrast to the minor effect on their photochemical properties. The electronic properties of the oxidised compounds in the +1 and +2 oxidation state are reported, and the possibility of electrochemical cyclisation and cycloreversion were explored by UV/Vis spectroelectrochemistry. The efficiency of electrochemical switching is found to be dependent both on the central cyclopentene unit and on the nature of the substituents at C5 of the thienyl rings. For the hexahydrocyclopentene-based compounds oxidative ring closure of the ring-open form is observed, while for the hexafluorocyclopentene-based compounds oxidative ring opening of the ring-closed form is observed. However, the introduction of electroactive groups such as methoxyphenyl allows oxidative ring closure to occur in the hexafluoro compounds. The effect of electrolyte, solvent and temperature on the spectroelectrochemical properties were examined, and the switching process was found to be sensitive to the donor properties of the solvent/electrolyte system employed. In addition, thermally activated reversible isomerisation of the dicationic closed form was observed. The driving force for electrochemical ring opening and closure appears to be dependent on the relative stabilisation of the dicationic ring-open and ring-closed states. This study provides insight into the factors which determine the direction of cyclisation.
Co-reporter:Rob Hoen;Jeroen A. F. Boogers Dr.;Heiko Bernsmann Dr.;Adriaan J. Minnaard Dr.;Auke Meetsma;Theodora D. Tiemersma-Wegman;André H. M. de Vries Dr.;Johannes G. de Vries Dr. Dr.
Angewandte Chemie 2005 Volume 117(Issue 27) pp:
Publication Date(Web):1 JUN 2005
DOI:10.1002/ange.200500784
Die Mischung macht's: Für die rhodiumkatalysierte asymmetrische Hydrierung von Zimtsäurederivaten wurde ein Katalysatorsystem entwickelt, das auf der Verwendung gemischter Liganden beruht (siehe Schema, cod= Cycloocta-1,5-dien). Zum ersten Mal lieferte ein Katalysatorkomplex mit einem chiralen und einem achiralen einzähnigen Liganden eine drastisch höhere Enantioselektivität (bis 99 %) als jeder der Homokomplexe.
Co-reporter:Jaap J. D. de Jong;P. Ralph Hania;Audrius Pugžlys Dr.;Linda N. Lucas Dr.;Maaike de Loos;Richard M. Kellogg Dr. Dr.;Koos Duppen Dr.;Jan H. van Esch Dr.
Angewandte Chemie 2005 Volume 117(Issue 16) pp:
Publication Date(Web):10 MAR 2005
DOI:10.1002/ange.200462500
Die reversible Photoumwandlung selbstorganisierender photochromer Dithienylcyclopenten-Schalter zwischen einem aggregierten und einem nichtaggregierten Zustand zeigt sich auf makroskopischem Niveau als vollständig reversibler Sol-Gel-Phasenübergang und hat in einem inhomogenen optischen Feld eine räumlich beschränkte Strukturbildung zur Folge. Die Reversibilität der Aggregation wird für eine dynamische Musterbildung genutzt (siehe Bilder).
Co-reporter:Ferno López Dr.;Syuzanna R. Harutyunyan Dr.;Auke Meetsma;Adriaan J. Minnaard Dr. Dr.
Angewandte Chemie 2005 Volume 117(Issue 18) pp:
Publication Date(Web):11 APR 2005
DOI:10.1002/ange.200500317
Stabile zweikernige Cu-Komplexe katalysieren die konjugierte Addition billiger und einfach zugänglicher Grignard-Reagentien an acyclische α,β-ungesättigte Ester. Auf diese Art werden die entsprechenden β-substituierten optisch aktiven Ester in hohen Ausbeuten und mit ausgezeichneten Enantioselektivitäten erhalten (siehe Schema). R3=Cyclohexyl, R4=Ph oder R3=Ph, R4=Cyclohexyl.
Co-reporter:Gerard Roelfes Dr. Dr.
Angewandte Chemie 2005 Volume 117(Issue 21) pp:
Publication Date(Web):21 APR 2005
DOI:10.1002/ange.200500298
Ein neuer Dreh in der Katalyse! Mit einem DNA-gebundenen Katalysator lässt sich die Chiralität von DNA direkt auf eine Diels-Alder-Reaktion übertragen. Ein katalytisch aktiver, mit DNA selbstorganisierter Kupferkomplex mit sonst achiralen Liganden liefert die Produkte mit bis zu 90 % ee, z. B. das exo-Isomer von 1.
Co-reporter:Ate Duursma, Diego Peña, Adriaan J. Minnaard, Ben L. Feringa
Tetrahedron: Asymmetry 2005 Volume 16(Issue 11) pp:1901-1904
Publication Date(Web):6 June 2005
DOI:10.1016/j.tetasy.2005.05.006
Mixtures of chiral and achiral monodentate phosphoramidite ligands lead to improved enantioselectivity in the rhodium-catalyzed boronic acid addition.Figure optionsDownload full-size imageDownload as PowerPoint slide
Co-reporter:Ferno López Dr.;Syuzanna R. Harutyunyan Dr.;Auke Meetsma;Adriaan J. Minnaard Dr. Dr.
Angewandte Chemie International Edition 2005 Volume 44(Issue 18) pp:
Publication Date(Web):11 APR 2005
DOI:10.1002/anie.200500317
Stable dinuclear Cu complexes have been used to catalyze the conjugate addition of inexpensive and readily available Grignard reagents to acyclic α,β-unsaturated esters. The method provides the corresponding β-substituted optically active esters in high yields and with excellent enantioselectivities (see scheme). R3=cyclohexyl, R4=Ph or R3=Ph, R4=cyclohexyl.
Co-reporter:Nathalie Katsonis, Monika Lubomska, Michael M. Pollard, Ben L. Feringa, Petra Rudolf
Progress in Surface Science (2007) Volume 82(7–8) pp:407-434
Publication Date(Web):1 January 2007
DOI:10.1016/j.progsurf.2007.03.011
Recent advances in synthetic methods and analysis techniques provide a basis for the construction and characterization of organized arrays of molecular switches and motors on surfaces. Among them, molecular systems that can be controlled by light are particularly promising because of their ease of addressability, fast response times and the compatibility of light with a wide range of condensed phases. The aim of this contribution is to highlight selected recent advances in building functional monolayers of light-activated molecules. Special focus is given to monolayers of molecules whose collective switching properties have been harnessed to produce macroscopic effects. The design, structure, and function of monolayers composed of bistable photochromic switches, which can control chirality, wettability, conductivity and self-assembly are described. A recent report on the successful demonstration of light-driven rotary motors functioning while grafted on gold surfaces will also be discussed, followed by a brief conclusion.
Co-reporter:D. J. van Dijken, P. Štacko, M. C. A. Stuart, W. R. Browne and B. L. Feringa
Chemical Science (2010-Present) 2017 - vol. 8(Issue 3) pp:NaN1789-1789
Publication Date(Web):2016/11/17
DOI:10.1039/C6SC02935C
The concept of using chirality to dictate dimensions and to store chiral information in self-assembled nanotubes in a fully controlled manner is presented. We report a photoresponsive amphiphile that co-assembles with its chiral counterpart to form nanotubes and demonstrate how chirality can be used to effect the formation of either micrometer long, achiral nanotubes or shorter (∼300 nm) chiral nanotubes that are bundled. The nature of these assemblies is studied using a variety of spectroscopic and microscopic techniques and it is shown that the tubes can be disassembled with light, thereby allowing the chiral information to be erased.
Co-reporter:Jort Robertus, Siebren F. Reker, Thomas C. Pijper, Albert Deuzeman, Wesley R. Browne and Ben L. Feringa
Physical Chemistry Chemical Physics 2012 - vol. 14(Issue 13) pp:NaN4382-4382
Publication Date(Web):2012/01/24
DOI:10.1039/C2CP23756C
Here we report a photochemical and kinetic study of the thermal relaxation reaction of a double azobenzene system, in which two azobenzene photochromic units are connected via a phenyl ring. Upon UV irradiation, three thermally unstable isomers are formed. Kinetic studies using arrayed 1H-NMR spectroscopy revealed four distinct barriers for the thermal reversion to the stable isomer. The double isomerised Z,Z-2 can revert thermally to the E,E-2 isomer via either of two isomerisation pathways. The thermal Z to E isomerisations are not significantly affected by the state of the neighbouring azo-switching unit in the meta position. These findings are supported by quantum chemical calculations on the thermal Z to E isomerisation.
Co-reporter:Tibor Kudernac, Nathalie Katsonis, Wesley R. Browne and Ben L. Feringa
Journal of Materials Chemistry A 2009 - vol. 19(Issue 39) pp:NaN7177-7177
Publication Date(Web):2009/06/19
DOI:10.1039/B902009H
This Highlight reviews recent advances in developing light-controlled molecular switches that can be of use for molecular and organic electronics.
Co-reporter:Thomas Jerphagnon, M. Gabriella Pizzuti, Adriaan J. Minnaard and Ben L. Feringa
Chemical Society Reviews 2009 - vol. 38(Issue 4) pp:NaN1075-1075
Publication Date(Web):2009/02/11
DOI:10.1039/B816853A
A comprehensive overview of recent literature from 2003 concerning advances in enantioselective copper catalysed 1,4-addition of organometallic reagents to α,β-unsaturated compounds is given in this critical review. About 200 ligands and catalysts are presented, with a focus on stereoselectivities, catalyst loading, ligand structure and substrate scope. A major part is devoted to trapping and tandem reactions and a variety of recent synthetic applications are used to illustrate the practicality and current state of the art of 1,4-addition of organometallic reagents. Finally several mechanistic studies are discussed (162 references).
Co-reporter:Depeng Zhao, Martín Fañanás-Mastral, Mu-Chieh Chang, Edwin Otten and Ben L. Feringa
Chemical Science (2010-Present) 2014 - vol. 5(Issue 11) pp:NaN4220-4220
Publication Date(Web):2014/07/21
DOI:10.1039/C4SC01940G
Chiral N,O-heterocycles were synthesized in high yields and excellent enantioselectivity up to 97% ee via iridium-catalysed intramolecular allylic substitution with nucleophilic attack by the amide oxygen atom. The resulting benzoxazine derivatives were further transformed into challenging chiral N,O-ketals bearing both a tertiary and a quaternary center with excellent diastereoselectivities.
Co-reporter:Valentín Hornillos, Massimo Giannerini, Carlos Vila, Martín Fañanás-Mastral and Ben L. Feringa
Chemical Science (2010-Present) 2015 - vol. 6(Issue 2) pp:NaN1398-1398
Publication Date(Web):2014/11/28
DOI:10.1039/C4SC03117B
A catalytic method for the direct cross-coupling of alkenyllithium reagents with aryl and alkenyl halides is described. The use of a catalyst comprising Pd2(dba)3/XPhos allows for the stereoselective preparation of a wide variety of substituted alkenes in high yields under mild conditions. In addition (1-ethoxyvinyl)lithium can be efficiently converted into substituted vinyl ethers which, after hydrolysis, give readily access to the corresponding methyl ketones in a one pot procedure.
Co-reporter:Stefano F. Pizzolato, Massimo Giannerini, Pieter H. Bos, Martín Fañanás-Mastral and Ben L. Feringa
Chemical Communications 2015 - vol. 51(Issue 38) pp:NaN8145-8145
Publication Date(Web):2015/04/09
DOI:10.1039/C5CC01521A
An efficient and highly α-selective copper-catalyzed allylic alkylation of allylic halides with organolithium reagents is presented. The use of N-heterocyclic carbenes as ligands is key to reverse the common γ-selectivity of this transformation and gives rise to the corresponding linear products with high levels of regioselectivity.
Co-reporter:Yange Huang, Martín Fañanás-Mastral, Adriaan J. Minnaard and Ben L. Feringa
Chemical Communications 2013 - vol. 49(Issue 32) pp:NaN3311-3311
Publication Date(Web):2013/03/06
DOI:10.1039/C3CC41021H
A highly efficient method for the enantioselective synthesis of 1,4-dienes (skipped dienes) with a methyl-substituted central stereogenic carbon using copper-catalysed asymmetric allylic alkylation of diene bromides was developed. Excellent regio- and enantioselectivity (up to 97:3 SN2′/SN2 ratio and 99% ee) were achieved with broad substrate scope.
Co-reporter:Lachlan Campbell-Verduyn, Philip H. Elsinga, Leila Mirfeizi, Rudi A. Dierckx and Ben L. Feringa
Organic & Biomolecular Chemistry 2008 - vol. 6(Issue 19) pp:NaN3463-3463
Publication Date(Web):2008/08/13
DOI:10.1039/B812403E
Arynes formed through fluoride-promoted ortho-elimination of o-(trimethylsilyl)aryl triflates can undergo [3 + 2] cycloaddition with various azides to form substituted benzotriazoles. The rapid reaction times and mild conditions make this an attractive variation of the classical ‘click’ reaction of azides and alkynes.
Co-reporter:Anouk S. Lubbe, Jos C. M. Kistemaker, Esther J. Smits and Ben L. Feringa
Physical Chemistry Chemical Physics 2016 - vol. 18(Issue 38) pp:NaN26735-26735
Publication Date(Web):2016/09/08
DOI:10.1039/C6CP03571J
As molecular machines move to exciting applications in various environments, the study of medium effects becomes increasingly relevant. It is difficult to predict how, for example, the large apolar structure of a light-driven rotary molecular motor is affected by a biological setting or surface proximity, while for future nanotechnology precise fine tuning and full understanding of the isomerization process are of the utmost importance. Previous investigations into solvent effects have mainly focused on the relatively large solvent–solute interaction of hydrogen bonding or polarization induced by the isomerization process. We present a detailed study of a key step in the rotary process i.e. the thermal helix inversion of a completely apolar rotary molecular motor in 50 different solvents and solvent mixtures. Due to the relative inertness of this probe, we are able to study the influence of subtle solvent–solvent interactions upon the rate of rotation. Statistical analysis reveals which solvent parameters govern the isomerization process.
Co-reporter:Tjalling R. Canrinus, Florian J. R. Cerpentier, Ben L. Feringa and Wesley R. Browne
Chemical Communications 2017 - vol. 53(Issue 10) pp:NaN1722-1722
Publication Date(Web):2017/01/11
DOI:10.1039/C7CC00017K
A delicate interplay of anisotropic hydrophobic/hydrophilic, π–π stacking, ionic and hydrogen bond interactions determine the strength of hydrogelators and are considered key factors in efforts to design potent small molecule hydrogelators. Here we show that solvent deuteration and electrolytic strength affect the strength of hydrogels formed from amino acid modified C3-symmetric cyclohexane trisamides profoundly. Gels formed by self-assembly through heating/cooling of solutions or by pH switching show up to a 30 °C increase in their melting temperatures in D2O compared to H2O. The unusually large solvent isotope effect on gel formation and thermal properties indicates that, in contrast to expectations, hydrogen bonding is not the primary determinant of gel strength but instead that hydrophobic interactions between the gelator molecules and the terminal carboxylic acid units are of greater importance. A conclusion that is supported by a similarly large effect of electrolytes on gel strength.
Co-reporter:Thomas van Leeuwen, G. Henrieke Heideman, Depeng Zhao, Sander J. Wezenberg and Ben L. Feringa
Chemical Communications 2017 - vol. 53(Issue 48) pp:NaN6396-6396
Publication Date(Web):2017/05/19
DOI:10.1039/C7CC03188B
The transfer of chirality from a molecular motor to a dynamic helical polymer via ionic interactions was investigated. A dopant with photoswitchable chirality was able to induce a preferred helicity in a poly(phenylacetylene) polymer and the helicity is inverted upon irradiation. The findings described herein will advance the development of functional and responsive polymeric systems.
Co-reporter:Petra M. Erne, Peter Štacko, Derk Jan van Dijken, Jiawen Chen, Marc C. A. Stuart and Ben L. Feringa
Chemical Communications 2016 - vol. 52(Issue 78) pp:NaN11700-11700
Publication Date(Web):2016/08/31
DOI:10.1039/C6CC05101D
Soft amphiphilic nanotubes are capped with vesicles comprised of either overall neutral, zwitterionic phospholipids, or those that carry a net charge. The phase transition temperature of the zwitterionic phospholipids plays a crucial role in the phase separation that leads to the end-capped nanotubes. The cationic vesicle caps can be loaded into the nanotubes via osmosis whereas the anionic vesicle caps are stable under hyper-osmotic conditions. Furthermore, no additional salt needs to be added for the cationic vesicle caps to induce the loading of the vesicles into the nanotubes due to the presence of counterions.
Co-reporter:Anouk S. Lubbe, Wiktor Szymanski and Ben L. Feringa
Chemical Society Reviews 2017 - vol. 46(Issue 4) pp:NaN1079-1079
Publication Date(Web):2017/01/27
DOI:10.1039/C6CS00461J
There is a growing interest in the photoregulation of biological functions, due to the high level of spatiotemporal precision achievable with light. Additionally, light is non-invasive and waste-free. In particular, the photoregulation of oligonucleotide structure and function is a rapidly developing study field with relevance to biological, physical and material sciences. Molecular photoswitches have been incorporated in oligonucleotides for 20 years, and the field has currently grown beyond fundamental studies on photochemistry of the switches and DNA duplex stability, and is moving towards applications in chemical biology, nanotechnology and material science. Moreover, the currently emerging field of photopharmacology indicates the relevance of photocontrol in future medicine. In recent years, a large number of publications has appeared on photoregulation of DNA and RNA structure and function. New strategies are evaluated and novel, exciting applications are shown. In this comprehensive review, the key strategies for photoswitch inclusion in oligonucleotides are presented and illustrated with recent examples. Additionally the applications that have emerged in recent years are discussed, including gene regulation, drug delivery and materials design. Finally, we identify the challenges that the field currently faces and look forward to future applications.
Co-reporter:Salma Kassem, Thomas van Leeuwen, Anouk S. Lubbe, Miriam R. Wilson, Ben L. Feringa and David A. Leigh
Chemical Society Reviews 2017 - vol. 46(Issue 9) pp:NaN2621-2621
Publication Date(Web):2017/04/20
DOI:10.1039/C7CS00245A
Motor proteins are nature's solution for directing movement at the molecular level. The field of artificial molecular motors takes inspiration from these tiny but powerful machines. Although directional motion on the nanoscale performed by synthetic molecular machines is a relatively new development, significant advances have been made. In this review an overview is given of the principal designs of artificial molecular motors and their modes of operation. Although synthetic molecular motors have also found widespread application as (multistate) switches, we focus on the control of directional movement, both at the molecular scale and at larger magnitudes. We identify some key challenges remaining in the field.
Co-reporter:D. Roke, M. Fañanás-Mastral and B. L. Feringa
Inorganic Chemistry Frontiers 2016 - vol. 3(Issue 11) pp:NaN1391-1391
Publication Date(Web):2016/07/07
DOI:10.1039/C6QO00199H
Polypropionate fragments are synthesized using a combination of a copper-catalyzed asymmetric allylic alkylation, ruthenium-catalyzed cross-metathesis and iridium-catalyzed asymmetric allylic etherification. The use of an appropriate chiral ligand for each catalytic reaction allows access to 1,2-hydroxymethyl arrays with good to excellent control over the relative and absolute configuration of the different stereocenters.
Co-reporter:M. Giannerini, C. Vila, V. Hornillos and B. L. Feringa
Chemical Communications 2016 - vol. 52(Issue 6) pp:NaN1209-1209
Publication Date(Web):2015/11/17
DOI:10.1039/C5CC08507A
An efficient sequential 1,2-addition/cross-coupling of Weinreb amides with two organolithium reagents is reported. This synthetic approach allows access to a wide variety of functionalized ketones in a modular way. The one-pot procedure presented here takes advantage of a kinetically stable tetrahedral Weinreb intermediate during subsequent Pd-catalyzed cross-coupling with the second organolithium reagent leading, within short reaction times and under mild conditions, to the formation of ketones in excellent overall yields.
Co-reporter:Jiawen Chen, Sander J. Wezenberg and Ben L. Feringa
Chemical Communications 2016 - vol. 52(Issue 41) pp:NaN6768-6768
Publication Date(Web):2016/04/05
DOI:10.1039/C6CC02382G
An intramolecular cargo transport device, based on a light-driven molecular motor, is presented. Detailed UV-vis and 1H NMR studies demonstrate that the gripper attached to the upper half of the molecular motor is able to pick up an acetyl group from one side of the lower stator and, after a photochemical Z–E isomerization, drop it on the opposite side.
Co-reporter:Valentín Hornillos, Anthoni W. van Zijl and Ben L. Feringa
Chemical Communications 2012 - vol. 48(Issue 31) pp:NaN3714-3714
Publication Date(Web):2012/03/07
DOI:10.1039/C2CC30395G
Highly enantioselective synthesis of chiral chromenes and tetrahydroquinolines is achieved by combining asymmetric copper-catalyzed allylic substitution with Grignard reagents and an efficient intramolecular Heck reaction. Moreover, the exocyclic double bond formed in the cyclisation was subjected to RCM, hydroboration and hydrogenation illuminating the synthetic versatility of these heterocycles.
Co-reporter:Matea Vlatković, Luca Bernardi, Edwin Otten and Ben L. Feringa
Chemical Communications 2014 - vol. 50(Issue 58) pp:NaN7775-7775
Publication Date(Web):2014/03/07
DOI:10.1039/C4CC00794H
Here we present a novel dynamic organocatalyst, based on a first-generation molecular motor core, able to control the stereochemical outcome of the Henry reaction using both light and heat as external stimuli.
Co-reporter:Jiawen Chen, Kuang-Yen Chen, Gregory T. Carroll and Ben L. Feringa
Chemical Communications 2014 - vol. 50(Issue 84) pp:NaN12644-12644
Publication Date(Web):2014/09/02
DOI:10.1039/C4CC04440A
In order to improve the rotary motion of surface assembled light-driven molecular motors, tetra-acid-functionalized motors were bound to an amine-coated quartz surface without prior activation of the acid groups. In contrast to earlier bipodal motors, the tetravalent motor showed no significant reduction in the rotation speed when attached to a surface.
Co-reporter:Claudia Poloni, Wiktor Szymanski and Ben L. Feringa
Chemical Communications 2014 - vol. 50(Issue 84) pp:NaN12648-12648
Publication Date(Web):2014/09/02
DOI:10.1039/C4CC06087C
Lipase from Candida rugosa was immobilised on a quartz surface using an azobenzene-containing, bifunctional linker, which allows deactivation of the immobilised enzyme by irradiation with visible light.
Co-reporter:Martín Fañanás-Mastral, Bjorn ter Horst, Adriaan J. Minnaard and Ben L. Feringa
Chemical Communications 2011 - vol. 47(Issue 20) pp:NaN5845-5845
Publication Date(Web):2011/04/18
DOI:10.1039/C0CC05161F
A stereoselective synthesis of 1,2-hydroxyalkyl moieties is described herein. These valuable building blocks are obtained with complete regiocontrol and excellent stereocontrol both for the syn or the anti products, by choosing the appropriate enantiomer of the ligand in a copper-catalyzed asymmetric allylic alkylation of δ-alkoxy-substituted allyl bromides.
Co-reporter:Carlos Vila, Valentín Hornillos, Martín Fañanás-Mastral and Ben L. Feringa
Chemical Communications 2013 - vol. 49(Issue 53) pp:NaN5935-5935
Publication Date(Web):2013/05/16
DOI:10.1039/C3CC43105C
A highly regio- and enantioselective copper catalysed direct conjugate addition of Grignard reagents to chromones has been developed taking advantage of the reduced reactivity of the resulting magnesium enolates. This methodology tolerates a broad scope of alkyl Grignards including secondary alkyl magnesium reagents as well as functionalised chromones.
Co-reporter:Willem A. Velema, Marc C. A. Stuart, Wiktor Szymanski and Ben L. Feringa
Chemical Communications 2013 - vol. 49(Issue 44) pp:NaN5003-5003
Publication Date(Web):2013/04/12
DOI:10.1039/C3CC41018H
External control over self-assembling structures is achieved by incorporating an azobenzene photoswitch into the structure of a dichromonyl compound. The self-assembly of dichromonyl compounds into fibers leads to the formation of a hydrogel and can be triggered with visible light.
Co-reporter:Bjorn ter Horst, Ben L. Feringa and Adriaan J. Minnaard
Chemical Communications 2010 - vol. 46(Issue 15) pp:NaN2547-2547
Publication Date(Web):2010/03/09
DOI:10.1039/B926265B
This feature article gives an overview of iterative synthetic methods for the construction of deoxypropionates, an important class of polyketides. The catalytic and non-catalytic methodologies discussed are based on highly stereoselective reactions which can be carried out in an iterative fashion. Non-catalytic methods are described first, followed by state of the art catalytic iterative protocols. The application of the iterative methods in the synthesis of natural products is discussed as well.
Co-reporter:Pieter H. Bos, Alena Rudolph, Manuel Pérez, Martín Fañanás-Mastral, Syuzanna R. Harutyunyan and Ben L. Feringa
Chemical Communications 2012 - vol. 48(Issue 12) pp:NaN1750-1750
Publication Date(Web):2012/01/03
DOI:10.1039/C2CC16855C
A highly efficient method is reported for the asymmetric ring opening of oxabicyclic alkenes with organolithium reagents. Using a copper/chiral phosphoramidite complex together with a Lewis acid (BF3·OEt2), full selectivity for the anti isomer and excellent enantioselectivities were obtained for the ring opened products.
Co-reporter:Arnold J. Boersma, Bas de Bruin, Ben L. Feringa and Gerard Roelfes
Chemical Communications 2012 - vol. 48(Issue 18) pp:NaN2396-2396
Publication Date(Web):2012/01/11
DOI:10.1039/C2CC17350F
DNA-based catalysis can be used to control the enantioselectivity of copper-catalysed Diels–Alder and Friedel–Crafts reactions to produce either enantiomer of the product by changing the denticity of the ligand coordinated to the Cu(II) ion, even though the DNA adopts a right handed helical conformation only.
Co-reporter:Johannes F. Teichert and Ben L. Feringa
Chemical Communications 2011 - vol. 47(Issue 9) pp:NaN2681-2681
Publication Date(Web):2011/01/31
DOI:10.1039/C0CC05160H
A new protocol for the Cu-catalysed asymmetric conjugate addition of Grignard reagents to coumarins has been developed. The corresponding products are formed in high yields and enantioselectivities. Through a sequential protocol involving conjugate addition followed by nucleophilic ring opening of the chiral enolate, chiral esters and amides are readily accessible.
Co-reporter:Davide Pantarotto, Wesley R. Browne and Ben L. Feringa
Chemical Communications 2008(Issue 13) pp:NaN1535-1535
Publication Date(Web):2007/11/16
DOI:10.1039/B715310D
Covalent attachment of the enzymes glucose oxidase and catalase to carbon nanotubes enables the tandem catalytic conversion of glucose and H2O2 formed to power autonomous movement of the nanotubes.
Co-reporter:Johannes W. de Boer;Wesley R. Browne;Syuzanna R. Harutyunyan;Laura Bini;Theodora D. Tiemersma-Wegman;Paul L. Alsters;Ronald Hage
Chemical Communications 2008(Issue 32) pp:
Publication Date(Web):2008/08/07
DOI:10.1039/B808355J
High turnover enantioselectivealkenecis-dihydroxylation is achieved with H2O2 catalysed by manganese based complexes containing chiral carboxylato ligands.
Co-reporter:Lachlan S. Campbell-Verduyn, Wiktor Szymański, Christiaan P. Postema, Rudi A. Dierckx, Philip H. Elsinga, Dick B. Janssen and Ben L. Feringa
Chemical Communications 2010 - vol. 46(Issue 6) pp:NaN900-900
Publication Date(Web):2010/01/05
DOI:10.1039/B919434G
Halohydrin dehalogenase (HheC) can perform enantioselective azidolysis of aromatic epoxides to 1,2-azido alcohols which are subsequently ligated to alkynes producing chiral hydroxy triazoles in a one-pot procedure with excellent enantiomeric excess.
Co-reporter:Bastiaan J. V. Verkuijl, Wiktor Szymański, Bian Wu, Adriaan J. Minnaard, Dick B. Janssen, Johannes G. de Vries and Ben L. Feringa
Chemical Communications 2010 - vol. 46(Issue 6) pp:NaN903-903
Publication Date(Web):2009/12/04
DOI:10.1039/B921661H
An efficient and selective method for the extraction of α-amino acids in preference over their β-isomers using PdCl2(PPh3)2 was discovered, which enables the separation of product mixtures obtained in the enantioselective enzymatic formation of β-amino acids.
Co-reporter:Xiaoyan Zhang, Anthony C. Coleman, Nathalie Katsonis, Wesley R. Browne, Bart J. van Wees and Ben L. Feringa
Chemical Communications 2010 - vol. 46(Issue 40) pp:NaN7541-7541
Publication Date(Web):2010/09/16
DOI:10.1039/C0CC02688C
A dispersion of graphene in ethanol was achieved using solvent exchange from N-methyl-2-pyrrolidone (NMP) that enables broader application of dispersed graphene.
Co-reporter:Tieme A. van den Berg, Ben L. Feringa and Gerard Roelfes
Chemical Communications 2007(Issue 2) pp:NaN182-182
Publication Date(Web):2006/10/23
DOI:10.1039/B613469F
Covalently linking two single strand DNA cleaving agents resulted in a new biomimetic binuclear iron complex capable of effecting oxidative double strand DNA cleavage.
Co-reporter:Gábor London, Gregory T. Carroll, Tatiana Fernández Landaluce, Michael M. Pollard, Petra Rudolf and Ben L. Feringa
Chemical Communications 2009(Issue 13) pp:NaN1714-1714
Publication Date(Web):2009/02/20
DOI:10.1039/B821755F
A Cu(I)-catalyzed 1,3-dipolar cycloaddition was used to construct a monolayer of an altitudinal molecular motor on quartz and silicon substrates, which represents the fastest light-driven molecular motor, to date, grafted to a solid surface.
Co-reporter:Lachlan S. Campbell-Verduyn, Leila Mirfeizi, Rudi A. Dierckx, Philip H. Elsinga and Ben L. Feringa
Chemical Communications 2009(Issue 16) pp:NaN2141-2141
Publication Date(Web):2009/03/19
DOI:10.1039/B822994E
Monodentate phosphoramidite ligands are used to accelerate the copper(I)-catalyzed 1,3-dipolar cycloaddition of azides and alkynes (CuAAC) rapidly yielding a wide variety of functionalized 1,4-disubstituted-1,2,3-triazoles; Cu(I) and Cu(II) salts both function as the copper source in aqueous solution to provide excellent yields.
Co-reporter:Sander J. Wezenberg, Christelle M. Croisetu, Marc C. A. Stuart and Ben L. Feringa
Chemical Science (2010-Present) 2016 - vol. 7(Issue 7) pp:NaN4346-4346
Publication Date(Web):2016/03/22
DOI:10.1039/C6SC00659K
A new type of low-molecular-weight gelator (LMWG), i.e. overcrowded alkene-based bis-ureas, can be switched effectively between cis and trans isomers using light as demonstrated by 1H NMR and UV-Vis spectroscopy. Gelation studies reveal that one of the synthesized trans compounds forms stable gels in aromatic hydrocarbon solvents down to a critical concentration of 0.4 mg mL−1. Transmission electron microscopy (TEM) shows that this gel consists of an entangled fibrous network. For the trans isomer of this LMWG intermolecular urea hydrogen bonding is observed in the solid state, whereas density functional theory (DFT) geometry optimization of the cis isomer indicates the possible formation of an intramolecular hydrogen bond. Irradiation of the gel triggers trans-to-cis isomerization and consequently, a gel–sol phase transition. This process can be fully reversed by altering the irradiation wavelength.
Co-reporter:Kingo Uchida, Shin-ichiro Sukata, Yuji Matsuzawa, Masako Akazawa, Jaap J. D. de Jong, Nathalie Katsonis, Yuko Kojima, Shinichiro Nakamura, Jetsuda Areephong, Auke Meetsma and Ben L. Feringa
Chemical Communications 2008(Issue 3) pp:
Publication Date(Web):
DOI:10.1039/B715251E
Co-reporter:J. P. Van der Berg, W. A. Velema, W. Szymanski, A. J. M. Driessen and B. L. Feringa
Chemical Science (2010-Present) 2015 - vol. 6(Issue 6) pp:NaN3598-3598
Publication Date(Web):2015/04/27
DOI:10.1039/C5SC00215J
Bacteria use a communication system, called quorum sensing (QS), to organize into communities and synchronize gene expression to promote virulence and secure survival. Here we report on a proof-of-principle for externally interfering with this bacterial communication system, using light. By employing photoswitchable small molecules, we were able to photocontrol the QS-related bioluminescence in an Escherichia coli reporter strain, and the expression of target QS genes and pyocyanin production in Pseudomonas aeruginosa.
Co-reporter:M. Ángeles Fernández-Ibáñez, Beatriz Maciá, Adriaan J. Minnaard and Ben L. Feringa
Chemical Communications 2008(Issue 22) pp:NaN2573-2573
Publication Date(Web):2008/04/01
DOI:10.1039/B801749B
Chiral tertiary alcohols were obtained with good yields and enantioselectivities via a catalytic Reformatsky reaction with ketones, including the challenging diaryl ketones, using chiral BINOL derivatives.
Co-reporter:Stephen P. Fletcher, Richard B. C. Jagt and Ben L. Feringa
Chemical Communications 2007(Issue 25) pp:NaN2580-2580
Publication Date(Web):2007/04/27
DOI:10.1039/B702882B
The sublimation of low ee amino acids was examined while exploring simple mechanisms by which high ee amino acids can be generated under conditions that exist in space; significant enantioenrichment of a variety of amino acids by sublimation was achieved.
Co-reporter:Bjorn ter Horst;Adriaan J. Minnaard
Chemical Communications 2007(Issue 5) pp:
Publication Date(Web):2007/01/24
DOI:10.1039/B612593J
The first catalytic asymmetric total synthesis of mycocerosic acid was achieved via the application of iterative enantioselective 1,4-addition reactions and allows for the efficient construction of 1,3-polymethyl arrays with full stereocontrol; further exemplified by the synthesis of tetramethyl-decanoic acid, a component of the preen-gland wax of the graylag goose, Anser anser.
Co-reporter:Martin Walko and Ben L. Feringa
Chemical Communications 2007(Issue 17) pp:NaN1747-1747
Publication Date(Web):2007/04/03
DOI:10.1039/B702264F
All three atropisomers of photochromic diarylethenes were isolated for the first time and the stereospecific photochemical switching process studied by UV–vis and CD spectroscopy.
Co-reporter:Carlos Vila, Massimo Giannerini, Valentín Hornillos, Martín Fañanás-Mastral and Ben L. Feringa
Chemical Science (2010-Present) 2014 - vol. 5(Issue 4) pp:NaN1367-1367
Publication Date(Web):2013/11/29
DOI:10.1039/C3SC53047G
Palladium-catalysed cross-coupling of secondary C(sp3) organometallic reagents has been a long-standing challenge in organic synthesis, due to the problems associated with undesired isomerisation or the formation of reduction products. Based on our recently developed catalytic C–C bond formation with organolithium reagents, herein we present a Pd-catalysed cross-coupling of secondary alkyllithium reagents with aryl and alkenyl bromides. The reaction proceeds at room temperature and on short timescales with high selectivity and yields. This methodology is also applicable to hindered aryl bromides, which are a major challenge in the field of metal catalysed cross-coupling reactions.
Co-reporter:Claudia Poloni, Marc C. A. Stuart, Pieter van der Meulen, Wiktor Szymanski and Ben L. Feringa
Chemical Science (2010-Present) 2015 - vol. 6(Issue 12) pp:NaN7318-7318
Publication Date(Web):2015/09/23
DOI:10.1039/C5SC02735G
The external photocontrol over peptide folding, by the incorporation of molecular photoswitches into their structure, provides a powerful tool to study biological processes. However, it is limited so far to switches that exhibit only a rather limited geometrical change upon photoisomerization and that show thermal instability of the photoisomer. Here we describe the use of an overcrowded alkene photoswitch to control a model β-hairpin peptide. This photoresponsive unit undergoes a large conformational change and has two thermally stable isomers which has major influence on the secondary structure and the aggregation of the peptide, permitting the phototriggered formation of amyloid-like fibrils.
Co-reporter:Gregory T. Carroll, Mahthild G. M. Jongejan, Dirk Pijper and Ben L. Feringa
Chemical Science (2010-Present) 2010 - vol. 1(Issue 4) pp:NaN472-472
Publication Date(Web):2010/07/09
DOI:10.1039/C0SC00159G
A chiral poly(n-hexyl isocyanate) can form ordered mesoscale toroidal structures when drop-cast on a variety of surfaces.
Co-reporter:Gregory T. Carroll, Michael M. Pollard, Richard van Delden and Ben L. Feringa
Chemical Science (2010-Present) 2010 - vol. 1(Issue 1) pp:NaN101-101
Publication Date(Web):2010/05/24
DOI:10.1039/C0SC00162G
Using circular dichroism (CD) spectroscopy, we show that light-driven rotary molecular motors based on overcrowded alkenes can function in a self-assembled monolayer on semi-transparent gold films.
Co-reporter:Mickel J. Hansen, Willem A. Velema, Michael M. Lerch, Wiktor Szymanski and Ben L. Feringa
Chemical Society Reviews 2015 - vol. 44(Issue 11) pp:NaN3377-3377
Publication Date(Web):2015/04/28
DOI:10.1039/C5CS00118H
Photocleavable protecting groups (PPGs) are extensively used in chemical and biological sciences. In their application, advantage is taken of using light as an external, non-invasive stimulus, which can be delivered with very high spatiotemporal precision. More recently, orthogonally addressing multiple PPGs, in a single system and with different wavelengths of light, has been explored. This approach allows one to independently control multiple functionalities in an external, non-invasive fashion. In this tutorial review, we discuss the design principles for dynamic systems involving wavelength-selective deprotection, focusing on the choice and optimization of PPGs, synthetic methods for their introduction and strategies for combining multiple PPGs into one system. Finally, we illustrate the design principles with representative examples, aiming at providing the reader with an instructive overview on how the wavelength-selective cleavage of photoprotecting groups can be applied in materials science, organic synthesis and biological systems.
Co-reporter:Jort Robertus, Wesley R. Browne and Ben L. Feringa
Chemical Society Reviews 2010 - vol. 39(Issue 1) pp:NaN378-378
Publication Date(Web):2009/10/14
DOI:10.1039/B906608J
In complex organisms, cells are often dependent on their extracellular matrix (ECM) for structural integrity, the mechanical properties of tissues, and for signaled regulation of cellular processes including adhesion, migration, growth, secretion, gene expression and apoptosis. Achieving dynamic control, i.e. by using an external stimulus, over the interactions between cells and artificial interfaces holds considerable promise in tissue engineering, medicine, cell biology and immunology. For example, improved spatial control over cell–surface interaction is potentially useful in the design of cell-based screening devices. Dynamic control over SAMs for cell adhesion provides an additional handle to direct and study the attachment of cells to surfaces, e.g., in studying cell spreading from a predetermined pattern in order to screen the cytotoxicity of drug candidates. However, ‘reversible’ control of cell adhesion onto substrates is an area that is still in its infancy. In this critical review recent developments in cell adhesion of mammalian cells to SAM-modified surfaces, the physical properties of which can be controlled by an external stimulus, e.g. by light, electrochemistry, etc., are discussed (118 references).
Co-reporter:Barbara Weiner, Wiktor Szymański, Dick B. Janssen, Adriaan J. Minnaard and Ben L. Feringa
Chemical Society Reviews 2010 - vol. 39(Issue 5) pp:NaN1691-1691
Publication Date(Web):2010/02/24
DOI:10.1039/B919599H
In this critical review, the progress in catalytic asymmetric synthesis of β-amino acids is discussed, covering the literature since 2002. The review treats transition metal catalysis, organocatalysis and biocatalysis and covers the most important synthetic methods, such as hydrogenation, the Mannich reaction and conjugate additions (160 references).
Co-reporter:Qian Li, Tieme A. van den Berg, Ben L. Feringa and Gerard Roelfes
Dalton Transactions 2010 - vol. 39(Issue 34) pp:NaN8021-8021
Publication Date(Web):2010/07/26
DOI:10.1039/B927145G
A series of monotopic N4Py (N,N-bis(2-pyridylmethyl)-N-bis(2-pyridyl)methylamine, 1) derived ligands have been prepared and evaluated in the iron catalyzed oxidative cleavage of pUC18 DNA, in the presence and absence of external reducing agent DTT. The mononuclear iron(II) complexes induce efficient DNA cleavage in air with a low catalyst loading. It was demonstrated that covalent attachment of 9-aminoacridine, ammonium group or 1,8-naphthalimide leads to increased DNA cleavage activity in the presence of a reductant. Also some complexes displayed a small degree of double-strand DNA cleavage activity. In contrast, in the absence of reducing agent, no beneficial effect of the covalently attached DNA binding moieties was observed, which was attributed to the reduction from Fe(III) to Fe(II), which is required for oxygen activation, becoming rate limiting. Mechanistic investigations revealed an important role for superoxide radicals. A proposed mechanism involves the formation of an Fe(III)–OOH intermediate as the active species or precursor.
Co-reporter:Johannes W. de Boer, Paul L. Alsters, Auke Meetsma, Ronald Hage, Wesley R. Browne and Ben L. Feringa
Dalton Transactions 2008(Issue 44) pp:NaN6295-6295
Publication Date(Web):2008/10/10
DOI:10.1039/B809177C
The role played by the additives salicylic acid, L-ascorbic acid and oxalic acid in promoting the catalytic activity of [MnIV2(O)3(tmtacn)2](PF6)2 {1(PF6)2, where tmtacn = N,N′,N″-trimethyl-1,4,7-triazacyclononane} in the epoxidation and cis-dihydroxylation of alkenes with H2O2 and in suppressing the catalysed decomposition of H2O2 is examined. Whereas aliphatic and aromatic carboxylic acids effect enhancement of the catalytic activity of 1 through the in situ formation dinuclear carboxylato bridged complexes of the type [MnIII2(μ-O)(μ-RCO2)2(tmtacn)2]2+, for L-ascorbic acid and oxalic acid notable differences in reactivity are observed. Although for L-ascorbic acid key differences in the spectroscopic properties of the reaction mixtures are observed compared with carboxylic acids, the involvement of carboxylic acids formed in situ is apparent. For oxalic acid the situation is more complex with two distinct catalyst systems in operation; the first, which engages in epoxidation only, is dominant until the oxalic acid additive is consumed completely at which point carboxylic acids formed in situ take on the role of additives to form a second distinct catalyst system, i.e. that which was observed for alkyl and aromatic carboxylic acids, which yield both cis-diol and epoxide products.
Co-reporter:Jiawen Chen, Emmanuelle Lacaze, Etienne Brasselet, Syuzanna R. Harutyunyan, Nathalie Katsonis and Ben L. Feringa
Journal of Materials Chemistry A 2014 - vol. 2(Issue 38) pp:NaN8141-8141
Publication Date(Web):2014/08/26
DOI:10.1039/C4TC01297F
We demonstrate the ultra-sensitive detection of molecular chirality experimentally, by investigating structural transitions in sessile droplets of cholesteric liquid crystals. By doping the liquid crystal with chiral molecular photo-switches, we demonstrate that both optical and structural transitions can be triggered by light, reversibly. Moreover, we show that depending on the initial confinement state of the cholesteric helix, the expression of chirality can be photo-switched on and off by means of an interplay between microscopic and geometric constraints.
Co-reporter:Thomas van Leeuwen, Thomas C. Pijper, Jetsuda Areephong, Ben L. Feringa, Wesley R. Browne and Nathalie Katsonis
Journal of Materials Chemistry A 2011 - vol. 21(Issue 9) pp:NaN3146-3146
Publication Date(Web):2011/01/24
DOI:10.1039/C0JM03626A
Upon addition of a chiral dopant to a nematic liquid crystal, amplification of molecular chirality can occur and consequently a cholesteric liquid crystal is formed. A major challenge in materials science consists in designing efficient chiral dopants that allow for control over chiral amplification by use of an external trigger, for example by irradiation with light, and thereby achieving the control of the dynamic and responsive structure of cholesteric liquid crystals. Here, a chiral photochromic switch bearing two chiral imine units connected viaphenyl spacers was synthesized and characterized in solution, where it can be photo-chemically converted from a colourless ring-opened form 1o to a coloured ring-closed form 1c, reversibly. We show that a small amount of 1o used as a dopant induces the formation of a stable cholesteric liquid crystal. The retention of the photochromic properties of 1, when used as a chiral dopant, allows for reversible photocontrol over the period of the cholesteric helix, and shows the highest values of helical twisting power achieved so far with diarylethene-based photoswitchable dopants.
Co-reporter:Nathalie Katsonis, Emmanuelle Lacaze and Ben L. Feringa
Journal of Materials Chemistry A 2008 - vol. 18(Issue 18) pp:NaN2073-2073
Publication Date(Web):2008/03/07
DOI:10.1039/B718170A
Understanding the structure of chiral self-assemblies at fluid/solid interfaces is not only relevant from a fundamental point of view but also crucial for the development of new artificial molecular materials and systems operating at the interface between a conductive surface and a fluid. Moreover, elucidating how the balance between intermolecular and interfacial interactions influences expression of chirality in 2D crystals contributes to the understanding of how chirality can be created, amplified and/or transmitted from the nanoscale to the macroscale. Therefore, the present contribution reviews recent selected investigations on how chirality is expressed in monolayers spontaneously formed by physisorption at fluid/solid interfaces, with an emphasis on the crucial role played by molecule/surface interactions. The techniques used involve scanning tunnelling microscopy (STM) and X-ray diffraction under grazing incidence (GIXD) operated at the fluid/solid interface.
Co-reporter:Thomas C. Pijper, Jort Robertus, Wesley R. Browne and Ben L. Feringa
Organic & Biomolecular Chemistry 2015 - vol. 13(Issue 1) pp:NaN268-268
Publication Date(Web):2014/11/06
DOI:10.1039/C4OB02120G
We report a straightforward method for the rapid conversion of thio-ethers to thio-acetates using TiCl4, in good to excellent yields. The reaction conditions tolerate a variety of functional groups, including halide, nitro, ether, thiophene and acetylene functionalities. A catalytic variant of this reaction is also described.
Co-reporter:Willem A. Velema, Jan Pieter van der Berg, Wiktor Szymanski, Arnold J. M. Driessen and Ben L. Feringa
Organic & Biomolecular Chemistry 2015 - vol. 13(Issue 6) pp:NaN1642-1642
Publication Date(Web):2014/12/10
DOI:10.1039/C4OB02483D
Patterning of multiple bacterial strains in one system is achieved by employing a single photo-activated antibiotic. Varying the light-exposure time results in zones with mixed and single populations.
Co-reporter:Yange Huang, Adriaan J. Minnaard and Ben L. Feringa
Organic & Biomolecular Chemistry 2012 - vol. 10(Issue 1) pp:NaN31-31
Publication Date(Web):2011/11/24
DOI:10.1039/C1OB06700A
A very efficient total synthesis of the apoptosis inducer (−)-rasfonin has been developed using CuBr/JosiPhos catalyzed iterative asymmetric conjugate addition of MeMgBr and Feringa's butenolide.
Co-reporter:Anne K. Schoonen, M. Ángeles Fernández-Ibáñez, Martín Fañanás-Mastral, Johannes F. Teichert and Ben L. Feringa
Organic & Biomolecular Chemistry 2014 - vol. 12(Issue 1) pp:NaN41-41
Publication Date(Web):2013/10/29
DOI:10.1039/C3OB41923A
A highly enantioselective one pot procedure for the synthesis of β-substituted amides was developed starting from the corresponding α,β-unsaturated esters. This new methodology is based on the copper-catalysed enantioselective conjugate addition of Grignard reagents to α,β-unsaturated esters and subsequent direct formation of amides by quenching the corresponding enolates with different amines. Various primary and secondary amines bearing alkyl or aryl substituents can be used giving rise to a large variety of β-substituted amides with excellent enantioselectivities.
Co-reporter:Carlos Vila, Valentín Hornillos, Martín Fañanás-Mastral and Ben L. Feringa
Organic & Biomolecular Chemistry 2014 - vol. 12(Issue 46) pp:NaN9323-9323
Publication Date(Web):2014/10/13
DOI:10.1039/C4OB01896F
2-Allyl-substituted thiophenes and furans are synthesised efficiently in a direct procedure using 2-heteroaryllithium reagents and allyl bromides and chlorides catalysed by ligand-free copper(I). The reactions take place under mild conditions, with excellent α-selectivity, high functional group tolerance and good yields for the SN2 products.
Co-reporter:Martín Fañanás-Mastral, Johannes F. Teichert, José Antonio Fernández-Salas, Dorus Heijnen and Ben L. Feringa
Organic & Biomolecular Chemistry 2013 - vol. 11(Issue 27) pp:NaN4525-4525
Publication Date(Web):2013/05/20
DOI:10.1039/C3OB40655E
An enantioselective synthesis of almorexant, a potent antagonist of human orexin receptors, is presented. The chiral tetrahydroisoquinoline core structure was prepared via iridium-catalysed asymmetric intramolecular allylic amidation. Further key catalytic steps of the synthesis include an oxidative Heck reaction at room temperature and a hydrazine-mediated organocatalysed reduction.
Co-reporter:Gábor London, Gregory T. Carroll and Ben L. Feringa
Organic & Biomolecular Chemistry 2013 - vol. 11(Issue 21) pp:NaN3483-3483
Publication Date(Web):2013/04/05
DOI:10.1039/C3OB40276B
The attachment of molecular rotary motors containing triethoxysilane functional groups to quartz, silicon and mica surfaces is described. Motors containing silane coupling agents in their structure form stable molecular layers on quartz and silicon surfaces. Motors attached to these surfaces were found to undergo photochemical and thermal isomerization steps similar to those observed in solution. Additionally, successful formation of molecular “carpets” on atomically flat mica extending micrometer-sized length scales is presented. These “carpets” were found to undergo morphological changes upon irradiation with UV-light.
Co-reporter:Pieter H. Bos, Beatriz Maciá, M. Ángeles Fernández-Ibáñez, Adriaan J. Minnaard and Ben L. Feringa
Organic & Biomolecular Chemistry 2010 - vol. 8(Issue 1) pp:NaN49-49
Publication Date(Web):2009/10/01
DOI:10.1039/B917269F
An efficient method is reported for the highly enantioselective copper-catalyzed conjugate addition of dialkylzinc reagents to α,β-unsaturated sulfones using a monodentate phosphoramidite ligand.
Co-reporter:Ewold W. Dijk, Arnold J. Boersma, Ben L. Feringa and Gerard Roelfes
Organic & Biomolecular Chemistry 2010 - vol. 8(Issue 17) pp:NaN3873-3873
Publication Date(Web):2010/06/25
DOI:10.1039/C005048B
A kinetic study of DNA-based catalytic enantioselective Friedel–Crafts alkylation and Michael addition reactions showed that DNA affects the rate of these reactions significantly. Whereas in the presence of DNA, a large acceleration was found for the Friedel–Crafts alkylation and a modest acceleration in the Michael addition of dimethyl malonate, a deceleration was observed when using nitromethane as nucleophile. Also, the enantioselectivities proved to be dependent on the DNA sequence. In comparison with the previously reported Diels–Alder reaction, the results presented here suggest that DNA plays a similar role in both cycloaddition and conjugate addition reactions.
Co-reporter:Michael M. Pollard, Auke Meetsma and Ben L. Feringa
Organic & Biomolecular Chemistry 2008 - vol. 6(Issue 3) pp:NaN512-512
Publication Date(Web):2007/12/13
DOI:10.1039/B715652A
Structural modification of unidirectional light-driven rotary molecular motors in which the naphthalene moieties are exchanged for substituted phenyl moieties are reported. This redesign provides an additional tool to control the speed of the motors, and should enable the design and synthesis of more complex systems.
Co-reporter:Boelo Schuur, Bastiaan J. V. Verkuijl, Adriaan J. Minnaard, Johannes G. de Vries, Hero J. Heeres and Ben L. Feringa
Organic & Biomolecular Chemistry 2011 - vol. 9(Issue 1) pp:NaN51-51
Publication Date(Web):2010/11/25
DOI:10.1039/C0OB00610F
The literature on enantioselective liquid–liquid extraction (ELLE) spans more than half a century of research. Nonetheless, a comprehensive overview has not appeared during the past few decades. Enantioselective liquid–liquid extraction is a technology of interest for a wide range of chemists and chemical engineers in the fields of fine chemicals, pharmaceuticals, agrochemicals, fragrances and foods. In this review the principles and advances of resolution through enantioselective liquid–liquid extraction are discussed, starting with an introduction on the principles of enantioselective liquid–liquid extraction including host–guest chemistry, extraction and phase transfer mechanisms, and multistage liquid–liquid extraction processing. Then the literature on enantioselective liquid–liquid extraction systems is reviewed, structured on extractant classes. The following extractant classes are considered: crown ether based extractants, metal complexes and metalloids, extractants based on tartrates, and a final section with all other types of chiral extractants.
Co-reporter:Jetsuda Areephong, Wesley R. Browne and Ben L. Feringa
Organic & Biomolecular Chemistry 2007 - vol. 5(Issue 8) pp:NaN1174-1174
Publication Date(Web):2007/03/19
DOI:10.1039/B702417G
The synthesis and photochemical characterization of bicomponent molecular switches based on covalently tethered dithienylethene photochromes is described. Both photochromic units undergo complete switching between the fully cyclised and fully non-cyclised states despite a significant level of electronic communication between the individual units and their proximity.
Co-reporter:Johannes H. Hurenkamp, Jaap J. D. de Jong, Wesley R. Browne, Jan H. van Esch and Ben L. Feringa
Organic & Biomolecular Chemistry 2008 - vol. 6(Issue 7) pp:NaN1277-1277
Publication Date(Web):2008/02/21
DOI:10.1039/B719095F
The synthesis and characterisation of a coumarin–dithienylcyclopentene–coumarin symmetric triad (CSC) and a perylene bisimide–dithienylcyclopentene–coumarin asymmetric triad (PSC) are reported. In both triads the switching function of the photochromic dithienylcyclopentene unit is retained. For CSC an overall 50% quenching of the coumarin fluorescence is observed upon ring-closure of the dithienylcyclopentene component, which, taken together with the low PSS (<70%), indicates that energy transfer quenching of the coumarin component by the dithienylcyclopentene in the closed state is efficient. Upon ring opening of the dithienylcyclopentene unit the coumarin emission is restored fully. The PSC triad shows efficient energy transfer from the coumarin to the perylene bisimide unit when the dithienylcyclopentene unit is in the open state. When the dithienylcyclopentene is in the closed (PSS) state a 60% decrease in sensitized perylene bisimide emission intensity is observed due to competitive quenching of the coumarin excited state and partial quenching of the perylene excited state by the closed dithienylcyclopentene unit. This modulation of energy transfer is reversible over several cycles for both the symmetric and asymmetric tri-component systems.
Co-reporter:Masako Akazawa, Kingo Uchida, Jaap J. D. de Jong, Jetsuda Areephong, Marc Stuart, Giuseppe Caroli, Wesley R. Browne and Ben L. Feringa
Organic & Biomolecular Chemistry 2008 - vol. 6(Issue 9) pp:NaN1547-1547
Publication Date(Web):2008/04/01
DOI:10.1039/B802580K
Dithienylperhydrocyclopentene-bisurea-based low molecular weight gelators are described that function as photoresponsive organogels that show a remarkable gel-to-liquid transition upon irradiation. The two series of derivatives, with and without alkyl spacers between the urea hydrogen bonding groups and the photochromic unit, show different gelation behavior. Upon UV irradiation of the gels, a gel liquified at only 1.4% conversion of the photochromic unit. Transmission electron microscopy (TEM) shows that the gel fibres consist of thin ribbons. Semi-empirical (PM3) calculations indicate that the hydrogen bonding between the open-ring isomer (o) molecules is weak, and that formation of the closed-ring isomer (c) destabilises the hydrogen bonding further. The results indicate that a small amount of the closed-ring isomer will disrupt the intermolecular hydrogen-bonding, leading to disintegration of the gel fibre ribbons and hence reversible liquification.
Co-reporter:Michael M. Pollard, Philana V. Wesenhagen, Dirk Pijper and Ben L. Feringa
Organic & Biomolecular Chemistry 2008 - vol. 6(Issue 9) pp:NaN1612-1612
Publication Date(Web):2008/03/11
DOI:10.1039/B718294E
Light-driven rotary molecular motors based on overcrowded alkenes can be substituted with electron-donating and electron-withdrawing substituents (R = OMe, Cl and CN) in direct conjugation with the central double bond (the axis of rotation) without having a significant influence on the rate-limiting, thermal isomerisation step of their rotary cycle. This indicates that in this system, it is predominantly steric factors that determine the barrier to the thermal helix inversion. In contrast, the quantum yield and photoequilibria in the photochemical step were found to be quite sensitive to the combination of substituent and solvent employed.
Co-reporter:Robert M. Haak, Chiara Tarabiono, Dick B. Janssen, Adriaan J. Minnaard, Johannes G. de Vries and Ben L. Feringa
Organic & Biomolecular Chemistry 2007 - vol. 5(Issue 2) pp:NaN323-323
Publication Date(Web):2006/12/11
DOI:10.1039/B613937J
3-Alkenyl and heteroaryl chloroalcohols have been obtained in excellent enantiomeric excess (>99%) by enzymatic kinetic resolution using the haloalcohol dehalogenase HheC. Yields were close to the theoretical maximum for all substrates employed. Furthermore, the applicability of this methodology on multigram scale has been established.
Co-reporter:Johannes H. Hurenkamp, Wesley R. Browne, Ramūnas Augulis, Audrius Pugžlys, Paul H. M. van Loosdrecht, Jan H. van Esch and Ben L. Feringa
Organic & Biomolecular Chemistry 2007 - vol. 5(Issue 20) pp:NaN3362-3362
Publication Date(Web):2007/09/17
DOI:10.1039/B711681K
The synthesis and characterisation of a novel coumarin donor–perylene bisimide acceptor light-harvesting system is reported, in which an energy-transfer efficiency of >99% is achieved. Comparison of the excited-state properties of the donor–acceptor system with model compounds revealed that although the photophysical properties of the perylene bisimide acceptor unit are affected considerably by the nature of the substituent at the imide positions and the solvent employed, through-bond interaction between the donor and acceptor units is negligible. Energy transfer in the present system can be described as occurring via a through-space energy-transfer mechanism. Careful consideration of the redox properties of the donor relative to the acceptor units allows for avoidance of potentially deleterious excited-state electron-transfer processes.
Co-reporter:Martin Klok, Wesley R. Browne and Ben L. Feringa
Physical Chemistry Chemical Physics 2009 - vol. 11(Issue 40) pp:NaN9131-9131
Publication Date(Web):2009/08/11
DOI:10.1039/B906611J
The combination of a photochemical and a thermal equilibrium in overcrowded alkenes, which is the basis for unidirectional rotation of light-driven molecular rotary motors, is analysed in relation to the actual average rotation rates of such structures. Experimental parameters such as temperature, concentration and irradiation intensity could be related directly to the effective rates of rotation that are achieved in solution by means of photochemical and thermal reaction rate theory. It is found that molecular properties, including absorption characteristics and photochemical quantum yields, are of less importance to the overall rate of rotation than the experimental parameters. This analysis holds considerable implications in the design of experimental conditions for functional molecular systems that will rely on high rates of rotation, and shows that average rotation rates comparable to ATPase or flagella motors are within reach assuming common experimental parameters.