Co-reporter:Yuichi Masuda, Ren Tanaka, A. Ganesan, and Takayuki Doi
The Journal of Organic Chemistry November 3, 2017 Volume 82(Issue 21) pp:11447-11447
Publication Date(Web):October 5, 2017
DOI:10.1021/acs.joc.7b01975
PF1171 hexapeptides, a family of cyclic hexapeptides produced by fungi, exhibit paralyzing effects on the larvae of silkworms via oral administration. To elucidate the structural features of PF1171 hexapeptides that are crucial for bioactivity, the relationship among 3D structure, bioactivity, and membrane permeability of PF1171F (the peptide with the highest bioavailability) was systematically analyzed through the synthesis of 22 analogues. The PF1171F analogues were prepared by the solid-phase synthesis of a linear precursor and subsequent solution-phase macrolactamization. Analysis by NMR spectroscopy and molecular modeling indicated that the major 3D conformations of PF1171F in various solvents resemble its X-ray crystal structure. The analogues with this conformation tend to exhibit potent paralysis against silkworms, indicating the significance of the conformation in the paralysis. The biological activity was dependent on the mode of administration, varying between hemolymph injection and oral administration. Parallel artificial membrane permeability assay (PAMPA) of the analogues revealed a correlation between membrane permeabilities and paralytic activity by hemolymph injection, indicating that the target molecule of PF1171F is present inside the cell membrane.
Co-reporter:Koya Saito, Masahito Yoshida, Hidehiro Uekusa, and Takayuki Doi
ACS Omega August 2017? Volume 2(Issue 8) pp:4370-4370
Publication Date(Web):August 9, 2017
DOI:10.1021/acsomega.7b00793
The synthesis of pyrrolyl 4-quinolinone alkaloid, quinolactacide, and its analogues was successfully achieved using 9-azajulolidine (9-AJ)-catalyzed tandem acyl transfer–regioselective cyclization of N,N-diacyl-o-alkynoylaniline derivatives. In addition, this organocatalytic reaction was successfully utilized for the synthesis of a variety of 3-acyl-4-quinolinones in moderate-to-good yields. Mechanistic studies, including a time course nuclear magnetic resonance (NMR) experiment, indicated that the 1,4-addition of 9-AJ to an ynone system can be considered to be the rate-determining step in this quinolinone synthesis.Topics: Reaction mechanism;
Co-reporter:Hirokazu Tsukamoto, Shogo Hanada, Koichi Kumasaka, Noritaka Kagaya, Miho Izumikawa, Kazuo Shin-ya, and Takayuki Doi
Organic Letters 2016 Volume 18(Issue 19) pp:4848-4851
Publication Date(Web):September 20, 2016
DOI:10.1021/acs.orglett.6b02328
Two benzo analogues of cytotoxic spiromamakone A, comprising carbon atoms with the same oxidation state and unsaturation degree as those of the natural products, are synthesized and biologically evaluated. Substitution of α,α′-dioxoketene dithioacetals, derived from 1,3-cyclopentanediones with protected (2-formylphenyl)magnesium bromide and 1,8-dihydroxynaphthalene, followed by deprotection, generated these analogues via an intramolecular aldol reaction. The cytotoxicity of benzo analogues and synthetic intermediates against cervical carcinoma HeLa cells shows the necessity of the 4-cyclopentene-1,3-dione moiety for biological activity.
Co-reporter:Hiroshi Sato, Masahito Yoshida, Hayato Murase, Hiroshi Nakagawa, and Takayuki Doi
ACS Combinatorial Science 2016 Volume 18(Issue 9) pp:590
Publication Date(Web):August 4, 2016
DOI:10.1021/acscombsci.6b00076
Combinatorial synthesis and biological evaluation of cyclodepsipeptide destruxin B have been achieved. The cyclization precursors were prepared by solid-phase peptide synthesis via a split and pool method utilizing SynPhase lanterns with colored tags and cogs, followed by cleavage from the polymer-support. Macrolactonization utilizing MNBA-DMAPO in solution-phase was successfully performed in parallel to afford the desired 64-member destruxin analogues in moderate to good yields. Biological evaluation of the synthesized analogues indicated that a MeAla residue for the building block A is required to induce the desired morphological changes in osteoclast-like multinuclear cells (OCLs), and introduction of the substituent at the R4 position of a proline moiety is tolerated by the morphology and may enable the preparation of a molecular probe for the target identification in the osteoclasts.Keywords: combinatorial library; cyclic peptides; cyclodepsipeptides; osteoclasts; solid-phase synthesis
Co-reporter:Yuichi Masuda, Chitose Maruyama, Kyuichi Kawabata, Yoshimitsu Hamano, Takayuki Doi
Tetrahedron 2016 Volume 72(Issue 36) pp:5602-5611
Publication Date(Web):8 September 2016
DOI:10.1016/j.tet.2016.07.050
A synthesis of (2S,3R,4R)-3,4-dihydroxyarginine, a metabolic intermediate of streptothricin, was accomplished. The (3R,4R)-dihydroxy groups were constructed by asymmetric syn-dihydroxylation of (E)-alkene, which was obtained by cross-metathesis of allylamine and l-vinylglycine derivatives. The synthesis of (2S,3S,4S)-3,4-dihydroxyarginine was also achieved in the same manner. The (2S,3R,4R)-3,4-dihydroxyarginine exhibited inhibitory activity against inducible nitric oxide synthase, unlike (2S,3S,4S)-3,4-dihydroxyarginine.
Co-reporter:Yuichi Masuda; Ren Tanaka; A. Ganesan
Journal of Natural Products 2015 Volume 78(Issue 9) pp:2286-2291
Publication Date(Web):September 8, 2015
DOI:10.1021/acs.jnatprod.5b00643
The total synthesis of the proposed structure of similanamide, a cyclic hexapeptide recently isolated from the marine sponge-associated fungus Aspergillus similanensis KUFA 0013, was achieved by solid-phase synthesis of a linear precursor and solution-phase macrolactamization. The NMR spectra of our synthetic final product were not identical to those of the isolated material and led us to conclude that similanamide is identical to PF1171C, a previously reported diastereomeric hexapeptide.
Co-reporter:Dr. Masahito Yoshida;Yoshitaka Ishida;Kenta Adachi;Hayato Murase;Dr. Hiroshi Nakagawa;Dr. Takayuki Doi
Chemistry - A European Journal 2015 Volume 21( Issue 50) pp:18417-18430
Publication Date(Web):
DOI:10.1002/chem.201502970
Abstract
The solid-phase combinatorial synthesis of cyclodepsipeptide destruxin E has been demonstrated. The combinatorial synthesis of cyclization precursors 8 was achieved by using a split and pool method on SynPhase Lanterns. The products were successfully macrolactonized in parallel in the solution phase by using 2-methyl-6-nitrobenzoic anhydride and 4-(dimethylamino)pyridine N-oxide to afford macrolactones 9, and the subsequent formation of an epoxide in the side chain gave 18 member destruxin E analogues 6. Biological evaluation of analogues 6 indicated that the N-MeAla residue was crucial to the induction of morphological changes in osteoclast-like multinuclear cells (OCLs). Based on structure–activity relationships, azido-containing analogues 15 were then designed for use as a molecular probe. The synthesis and biological evaluation of analogues 15 revealed that 15 b, in which the Ile residue was replaced with a Lys(N3) residue, induced morphological changes in OCLs at a sufficient concentration, and modification around the Ile residue would be tolerated for attachment of a chemical tag toward the target identification of destruxin E (1).
Co-reporter:Masahito Yoshida, Ken-ichi Sasahara, Takayuki Doi
Tetrahedron 2015 Volume 71(Issue 40) pp:7647-7653
Publication Date(Web):7 October 2015
DOI:10.1016/j.tet.2015.07.064
Solid-phase total synthesis of cyclodepsipeptide spiruchostatin A (1) has been achieved. Initially, immobilization of the Boc-d-Val-statine derivative 3 via the hindered β-hydroxy group was efficiently achieved using polymer-supported silyl triflate. Subsequently, the peptide chain was successfully extended on the polymer-support to yield the tetrapeptide cyclization precursor 2 with high purity. 2-Methyl-6-nitrobenzoic anhydride (MNBA)-mediated macrolactonization of 2 proceeded smoothly on the polymer-support to provide macrolactone 12. Finally, release of the macrolactone from the polymer-support followed by in situ disulfide formation furnished spiruchostatin A (1) in 17% overall yield.
Co-reporter:Takayuki Doi, Hiroyuki Otaka, Koji Umeda, Masahito Yoshida
Tetrahedron 2015 Volume 71(Issue 37) pp:6463-6470
Publication Date(Web):16 September 2015
DOI:10.1016/j.tet.2015.05.051
Flow synthesis of (E)-(S)-3-hydroxy-7-tritylthio-4-heptenoic acid (5), a key component of cyclodepsipeptide histone deacetylase inhibitors was achieved. An efficient flow system for the synthesis of α, β-unsaturated ester 8 was established using a flow reactor column packed with polymer-supported 1,4-diazabicyclo[2.2.2]octane and a fast mixing accessible flow reactor (Comet X-01). Enal 9 was efficiently prepared by a partial reduction of the α, β-unsaturated ester 8 using diisobutylaluminium hydride in the flow system, and the continuous-flow diastereoselective aldol reaction was performed at low temperature, giving a good yield and diastereoselectivity of the desired aldol 10.
Co-reporter:Dr. Masahito Yoshida;Naoki Sekioka;Dr. Miho Izumikawa;Dr. Ikuko Kozone;Dr. Motoki Takagi;Dr. Kazuo Shin-ya;Dr. Takayuki Doi
Chemistry - A European Journal 2015 Volume 21( Issue 7) pp:3031-3041
Publication Date(Web):
DOI:10.1002/chem.201406020
Abstract
The total synthesis and stereochemical structural elucidation of JBIR-39, containing four nonproteinogenic piperazic acid (Piz) residues, is reported. The synthesis includes Sc(OTf)3-catalyzed acylation of a Piz(γ-OTBS) derivative with piperazic acid chloride, providing the desired Piz-Piz(γ-OTBS) dipeptide in high yield without epimerization. After assembling two additional Piz moieties and (S)-isoleucic acid at the N-terminus, amidation with the (R)-α-methylserine ester at the C-terminus, and deprotection afforded the desired (2R,8S)-hexapeptide, which is the assumed structure of JBIR-39. Although the spectral data of the (2R,8S)-hexapeptide was not identical to JBIR-39, further synthesis of three stereoisomers confirmed the stereochemical structure of JBIR-39 to be (2S,6S,8S,11R,16S,21R,26S,27S).
Co-reporter:Koichi Fujiwara, Hirokazu Tsukamoto, Miho Izumikawa, Takahiro Hosoya, Noritaka Kagaya, Motoki Takagi, Hideki Yamamura, Masayuki Hayakawa, Kazuo Shin-ya, and Takayuki Doi
The Journal of Organic Chemistry 2015 Volume 80(Issue 1) pp:114-132
Publication Date(Web):December 1, 2014
DOI:10.1021/jo502198y
The planar and stereostructures of JBIR-108 isolated from Streptomyces gramineus IR087Pi-4 were determined partly by spectral analysis, and these structural assignments were confirmed and completed by the total synthesis of both 1-epimers. The key stereocenters in JBIR-108 were constructed via a Corey–Bakshi–Shibata (CBS) reduction (C-1), vinylogous Mukaiyama aldol reaction (C-7), and Brown crotylation (C-14 and C-15). Although it was difficult to determine the stereochemistries at the C-1 and C-7 positions in the natural product using the modified Mosher’s method, the synthesis of two possible C-1 diastereomers enabled the identification of the configurations at the hitherto unknown stereocenters.
Co-reporter:Shinichiro Fuse ; Hirotsugu Koinuma ; Atsushi Kimbara ; Miho Izumikawa ; Yuto Mifune ; Haiyin He ; Kazuo Shin-ya ; Takashi Takahashi
Journal of the American Chemical Society 2014 Volume 136(Issue 34) pp:12011-12017
Publication Date(Web):July 31, 2014
DOI:10.1021/ja505105t
Development of efficient methods for preparation of bioactive nonribosomal peptides, containing densely functionalized nonproteinogenic amino acids, is an important task in organic synthesis. We have employed a concise synthesis for such amino acids by asymmetric aldol addition coupled with an isomeric resolution via diastereoselective cyclization. This approach is successfully applied to the first total synthesis of the cyclic hexapeptide aglycone of the mannopeptimycins, a group of glycopeptides known for potent activity against drug-resistant bacteria. The facile preparation of the key amino acids and the synthesis of the aglycone pave the way for further studies on this class of antibiotics and the development of new lead compounds with therapeutic potential. In addition, our studies have led to the revision of the stereochemistry of the β-methylphenylalanine residue in the mannopeptimycin aglycone.
Co-reporter:Takayuki Doi, Masahito Yoshida, Kosuke Ohsawa, Kazuo Shin-ya, Motoki Takagi, Yoshinori Uekusa, Takumi Yamaguchi, Koichi Kato, Takatsugu Hirokawa and Tohru Natsume
Chemical Science 2014 vol. 5(Issue 5) pp:1860-1868
Publication Date(Web):06 Jan 2014
DOI:10.1039/C3SC53237B
We have characterized the inhibition of the protein–protein interaction of the homodimer of proteasome assembling chaperone (PAC) 3 with thielocin B1, discovered from natural product sources. Molecular modeling using docking studies and molecular dynamics simulation suggested that thielocin B1 exhibits distinct binding positions on the interface of the homodimer and the complex can be stabilized by five interactive residues on PAC3. Thielocin B1 was synthesized for the first time and was utilized for nuclear magnetic resonance (NMR) titration of the PAC3 homodimer. The data revealed significant chemical shift perturbations observed in eight residues on PAC3. We also synthesized a spin-labeled derivative to observe paramagnetic relaxation enhancement (PRE) effects. As a result, distinct decrease of the intensities of the NH peaks was observed in sixteen residues of PAC3 in the presence of the spin-labeled derivative. Both the NMR experiments and further in silico docking studies have suggested that thielocin B1 approaches one face of the PAC3 homodimer, not the monomer, releasing the subunit of the interface of the PAC3 homodimer by a rare pre-dissociation-independent mechanism.
Co-reporter:Masahito Yoshida;Hiroyuki Otaka
European Journal of Organic Chemistry 2014 Volume 2014( Issue 27) pp:6010-6016
Publication Date(Web):
DOI:10.1002/ejoc.201402675
Abstract
The partial reduction of α,β-unsaturated esters and benzoate derivatives to form the corresponding aldehydes was achieved using a flow reactor system within 1 s at a high flow rate (18 mL min–1) under cryogenic conditions (–97 °C). Commercially available diisobutylaluminium hydride (DIBAL-H) was used as the reductant. The desired enals and benzaldehyde derivatives, except for 4-methoxycinnamate and 4-methoxybenzoate, were formed selectively and redox economically in moderate to high yields.
Co-reporter:Masahito Yoshida, Koya Saito, Yuta Fujino, Takayuki Doi
Tetrahedron 2014 70(21) pp: 3452-3458
Publication Date(Web):
DOI:10.1016/j.tet.2014.03.073
Co-reporter:Masahito Yoshida, Hiroshi Sato, Yoshitaka Ishida, Hiroshi Nakagawa, and Takayuki Doi
The Journal of Organic Chemistry 2014 Volume 79(Issue 1) pp:296-306
Publication Date(Web):November 19, 2013
DOI:10.1021/jo402437z
The scalable solution-phase synthesis of the cyclodepsipeptide destruxin E (1) has been achieved. Diastereoselective dihydroxylation of the terminal alkene in a 2-alkoxy-4-pentenoic amide, 7, was successfully accomplished utilizing (DHQD)2PHAL as the chiral ligand, and it was found that the use of the l-proline moiety in the substrate as a chiral auxiliary was essential for the induction of high diastereoselectivity to afford the key compound 4 on a gram scale. MNBA-mediated macrolactonization of 3 was also performed without formation of the dimerized product even under higher-dilution conditions, and it is noteworthy that the internal hydrogen bonds and s-cis configuration of the amide bond between N-methylalanine and N-methylvaline in the cyclization precursor 3 would assist in the macrolactonization to provide the macrolactone 2 without forming a dimerized product. Finally, epoxide formation in the side chain afforded destruxin E (1) on a gram scale in high purity (>98%).
Co-reporter:Yuichi Masuda, Jun Suzuki, Yuichi Onda, Yuta Fujino, Masahito Yoshida, and Takayuki Doi
The Journal of Organic Chemistry 2014 Volume 79(Issue 17) pp:8000-8009
Publication Date(Web):August 5, 2014
DOI:10.1021/jo501130b
Total synthesis of apratoxin C, a cyanobacterial cyclodepsipeptide with highly potent cytotoxicity against some cancer cell lines, was achieved using the apratoxin A synthetic strategy developed by us. To elucidate the relationship between conformation and activity, the tertiary structure of apratoxin C was analyzed by NMR spectroscopy. We obtained 37 ROEs and five 3JH,H values, which were translated into distance and dihedral angle constraints, respectively. Molecular modeling was performed with a restrained conformational search by a distance geometry method. The lowest energy structure indicated that the methyl group at C37 and the isopropyl group at C39 play critical roles in maintaining the conformation, whereas the methyl group at C34 does not. Moreover, we confirmed that apratoxin A and C possess similar conformations, providing a likely explanation for their nearly equivalent cytotoxicities.
Co-reporter:Yuichi Masuda, Ren Tanaka, Kenji Kai, A. Ganesan, and Takayuki Doi
The Journal of Organic Chemistry 2014 Volume 79(Issue 17) pp:7844-7853
Publication Date(Web):August 7, 2014
DOI:10.1021/jo500861k
The total synthesis of the cyclic hexapeptides PF1171A, C, F, and G has been achieved by solid-phase synthesis of a linear precursor and solution-phase macrolactamization. The synthesis includes a solid-phase peptide coupling with the weakly nucleophilic amino group of an anthranilic acid residue. This was efficiently achieved by in situ generation of an Fmoc-amino acid chloride using triphosgene. The natural products exhibit potent paralytic activities against silkworm larvae, whereas epi-PF1171A and epi-PF1171C, bearing l-Ala instead of d-Ala, were relatively inactive. X-ray crystallographic analysis indicates that intramolecular hydrogen bonds in PF1171 peptides are critical for maintaining their active conformations.
Co-reporter:Shinichiro Fuse, Kennichi Inaba, Motoki Takagi, Masahiro Tanaka, Takatsugu Hirokawa, Kohei Johmoto, Hidehiro Uekusa, Kazuo Shin-ya, Takashi Takahashi, Takayuki Doi
European Journal of Medicinal Chemistry 2013 Volume 66() pp:180-184
Publication Date(Web):August 2013
DOI:10.1016/j.ejmech.2013.05.030
•Starting from spiromamakone, a more synthetically accessible template was designed.•A total of 50 compounds were rapidly constructed and their cytotoxicity was evaluated.•(±)-7d-II was discovered to be a 15-fold more cytotoxic agent than spiromamakone.•(±)-7d-II appeared to act in a manner similar to spiromamakone.The spirocycle is a key structure found in many bioactive compounds. From the cytotoxic and spirocyclic natural product, spiromamakone A (1) and its analogues, a more synthetically accessible spiroacetal template 4 was designed based on structural similarity analysis. A total of 50 compounds were rapidly synthesized in only one or two synthetic steps from the starting compound, and their cytotoxicity was evaluated. As a result, (±)-(2R*,5R*)-2-(4-iodophenyl)-7-chloro-1,4-dioxa-spiro[4.5]deca-6,9-dien-8-one (7d-II) was discovered and found to be fifteen-fold more cytotoxic than 1. The easily accessible spiroacetal 7d-II appeared to act in a manner similar to the highly oxidized natural product, spiromamakone A (1).
Co-reporter:Kosuke Ohsawa, Masahito Yoshida, and Takayuki Doi
The Journal of Organic Chemistry 2013 Volume 78(Issue 7) pp:3438-3444
Publication Date(Web):March 11, 2013
DOI:10.1021/jo400056k
A silver trifluoromethanesulfonate (AgOTf)-promoted direct and mild formylation of benzenes has been developed. The reaction utilizing dichloromethyl methyl ether (Cl2CHOMe) and AgOTf powerfully formylated various substituted benzenes under temperature conditions as low as −78 °C without losing the protecting groups on the phenolic hydroxyl group.
Co-reporter:Masahito Yoshida, Koya Saito, Yuta Fujino and Takayuki Doi
Chemical Communications 2012 vol. 48(Issue 96) pp:11796-11798
Publication Date(Web):31 Oct 2012
DOI:10.1039/C2CC37015H
Lewis base-catalyzed tandem acyl transfer–cyclization of acylated o-alkynoylphenols leading to 3-aroylflavones was developed. 9-Azajulolidine smoothly promoted the reaction of the aroyl derivatives at ambient temperature, and the structure-diversed synthesis of 3-aroylflavones with distinct substituents was achieved in moderate to excellent yields.
Co-reporter:Kiyofumi Inamoto, Chisa Hasegawa, Kou Hiroya, Yoshinori Kondo, Takao Osako, Yasuhiro Uozumi and Takayuki Doi
Chemical Communications 2012 vol. 48(Issue 23) pp:2912-2914
Publication Date(Web):19 Jan 2012
DOI:10.1039/C2CC17401D
The coupling reaction of aryl iodides with arylboronic acids to give biaryl compounds can be efficiently performed without adding a transition metal catalyst. The key to success is the use of dimethyl carbonate as a solvent. This finding provides a new strategy for constructing a biaryl linkage.
Co-reporter:Masahito Yoshida, Yuta Fujino, and Takayuki Doi
Organic Letters 2011 Volume 13(Issue 17) pp:4526-4529
Publication Date(Web):August 3, 2011
DOI:10.1021/ol2016934
Regioselective cyclization of o-alkynoylphenols forming γ-benzopyranones has been demonstrated. Trifluoromethanesulfonic acid (TfOH) induced 6-endo cyclization of o-alkynoylphenols without forming 5-exo cyclized benzofuranone derivatives to provide the corresponding γ-benzopyranones in high yields.
Co-reporter:Shinichiro Fuse, Kumiko Okada, Yusuke Iijima, Asami Munakata, Kazuhiro Machida, Takashi Takahashi, Motoki Takagi, Kazuo Shin-ya and Takayuki Doi
Organic & Biomolecular Chemistry 2011 vol. 9(Issue 10) pp:3825-3833
Publication Date(Web):29 Mar 2011
DOI:10.1039/C0OB01169J
The total synthesis of a natural productHDAC inhibitor, spiruchostatin B, was successfully achieved. A 5-step synthesis that included an asymmetric aldol reaction was carried out in an automated synthesizer to provide an (E)-(S)-3-hydroxy-7-thio-4-heptenoic acid segment that is the crucial structure of cysteine-containing, depsipeptidic natural products such as spiruchostatins, FK228, FR901375, and largazole for their inhibitory activity against HDACs.
Co-reporter:Takayuki Doi, Kazuaki Shibata, Masahito Yoshida, Motoki Takagi, Masayuki Tera, Kazuo Nagasawa, Kazuo Shin-ya and Takashi Takahashi
Organic & Biomolecular Chemistry 2011 vol. 9(Issue 2) pp:387-393
Publication Date(Web):21 Oct 2010
DOI:10.1039/C0OB00513D
Total synthesis of the (S)-stereoisomer of telomestatin (1) was accomplished. (S)-Telomestatin exhibited potency four times that of the natural product, (R)-telomestatin, which was the most potent telomerase inhibitor previously reported. In the circular dichroism spectral analysis of the complexes possessing randomly structured single-stranded d[TTAGGG]4 oligonucleotide, (S)-telomestatin, like (R)-telomestatin, induced an antiparallel G-quadruplex structure. The melting temperature (Tm) value of the (S)-isomer complex was greater than that of the (R)-telomestatin complex. Therefore, it is concluded that the stereochemistry of the thiazoline of telomestatin is important to the binding ability of a G-quadruplex binder, and (S)-telomestatin as a G-quadruplex binder is more potent than the natural product.
Co-reporter:Masahito Yoshida, Yuta Fujino, Koya Saito, Takayuki Doi
Tetrahedron 2011 67(51) pp: 9993-9997
Publication Date(Web):
DOI:10.1016/j.tet.2011.09.063
Co-reporter:Dr. Takayuki Doi;Dr. Yoshitaka Numajiri;Dr. Takashi Takahashi;Dr. Motoki Takagi;Dr. Kazuo Shin-ya
Chemistry – An Asian Journal 2011 Volume 6( Issue 1) pp:180-188
Publication Date(Web):
DOI:10.1002/asia.201000549
Abstract
Two approaches for the solid-phase total synthesis of apratoxin A and its derivatives were accomplished. In synthetic route A, the peptide was prepared by the sequential coupling of the corresponding amino acids on trityl chloride SynPhase Lanterns. After cleavage from the polymer-support, macrolactamization of 10, followed by thiazoline formation, provided apratoxin A. This approach, however, resulted in low yield because the chemoselectivity was not sufficient for the formation of the thiazoline ring though its analogue 33 was obtained. However, in synthetic route B, a cyclization precursor was prepared by solid-phase peptide synthesis by using amino acids 13–15 and 18. The final macrolactamization was performed in solution to provide apratoxin A in high overall yield. This method was then successfully applied to the synthesis of apratoxin analogues. The cytotoxic activity of the synthetic derivatives was then evaluated. The epimer 34 was as potent as apratoxin A, and O-methyl tyrosine can be replaced by 7-azidoheptyl tyrosine without loss of activity. The 1,3-dipolar cycloaddition of 38 with phenylacetylene was performed in the presence of a copper catalyst without affecting the thiazoline ring.
Co-reporter:Masahito Yoshida, Hisayuki Takeuchi, Yoshitaka Ishida, Yoko Yashiroda, Minoru Yoshida, Motoki Takagi, Kazuo Shin-ya and Takayuki Doi
Organic Letters 2010 Volume 12(Issue 17) pp:3792-3795
Publication Date(Web):July 30, 2010
DOI:10.1021/ol101449x
The total synthesis of destruxin E (1) has been achieved for the first time, and the stereochemistry of its chiral center at the epoxide has been determined to be (S). The cyclization precursor 3a was synthesized by solid-phase peptide synthesis. Macrolactonization of 3a utilizing MNBA-DMAPO, followed by formation of the epoxide, then furnished destruxin E. Its diastereomer, epi-destruxin E (2), was also synthesized in the same manner. Furthermore, the biological evaluation indicated that destruxin E exhibits V-ATPase inhibitory activity 10-fold greater than that of epi-destruxin E.
Co-reporter:Seiji Kamioka, Sakae Sugiyama, Takashi Takahashi and Takayuki Doi
Organic & Biomolecular Chemistry 2010 vol. 8(Issue 11) pp:2529-2536
Publication Date(Web):01 Apr 2010
DOI:10.1039/C001228A
Synthesis and structure elucidation of optically active tri-, tetra-, and penta-azamacrocycles having 4-methoxyphenyl pendants are described. Regioselective ring opening of a nosylaziridine with secondary benzyl amines was repeatedly performed to afford the cyclization precursors. Intramolecular N-alkylation of N-(ω-haloalkyl) nosylamide provided tri-, tetra-, and penta-azamacrocycles. On the basis of our study of the tetra-azamacrocycle previously elucidated by X-ray single-crystal analysis and in solution by NMR analysis, we conclude that the tri-azamacrocycle does not mainly have a vase-type conformation because of the steric hindrance of the 4-methoxyphenyl groups but the penta-azamacrocycle has a vase-type conformation in CDCl3 and in CD2Cl2. The vase-type conformation of the penta-azamacrocycle is, however, not as much stable as that observed in the tetra-azamacrocycle because conformational flexibility of the penta-azamacrocycle was observed in deuterated benzene.
Co-reporter:Kazuaki Shibata, Masahito Yoshida, Takayuki Doi, Takashi Takahashi
Tetrahedron Letters 2010 Volume 51(Issue 13) pp:1674-1677
Publication Date(Web):31 March 2010
DOI:10.1016/j.tetlet.2010.01.064
Modification at the C5 position of an oxazole ring contained in a 2,4-concatenated tris-oxazole by Pd-catalyzed coupling reactions was performed. Novel Pd-catalyzed amination and alkoxylation of a 5-bromooxazole derivative as well as Suzuki–Miyaura coupling and Migita–Stille coupling have been demonstrated. A wide variety of functional groups, including aryl, heteroaryl, primary and secondary amines, and phenol, were introduced in the 5-bromooxazole moiety in moderate to excellent yields using Pd(OAc)2/S-PHOS or Pd(OAc)2/X-PHOS as a catalyst.
Co-reporter:Kiyofumi Inamoto, Tadataka Saito, Kou Hiroya and Takayuki Doi
The Journal of Organic Chemistry 2010 Volume 75(Issue 11) pp:3900-3903
Publication Date(Web):May 6, 2010
DOI:10.1021/jo100557s
A catalytic synthetic approach for the synthesis of 2-quinolinone compounds through a Pd-catalyzed C(sp2)−H functionalization/intramolecular amidation sequence is described. The cyclization process efficiently proceeds in the presence of a catalytic amount of PdCl2 and Cu(OAc)2 under an O2 atmosphere, providing practical access to a range of variously substituted 4-aryl-2-quinolinones.
Co-reporter:Seiji Kamioka, Takashi Takahashi, Susumu Kawauchi, Hiroaki Adachi, Yusuke Mori, Kotaro Fujii, Hidehiro Uekusa and Takayuki Doi
Organic Letters 2009 Volume 11(Issue 11) pp:2289-2292
Publication Date(Web):May 11, 2009
DOI:10.1021/ol9005954
A chiral tetraazamacrocycle 9 having four pendant-arms was synthesized by repeating ring opening of an Ns-aziridine with secondary amines, followed by macrocyclization. The structure of 9 has been determined by single crystal X-ray diffraction analysis and NMR studies. Sugar-hybrid molecules 12a−12f were synthesized based on the scaffold 9. NMR study showed that 12a−12f keep the similar conformation as 9 in solution.
Co-reporter:Jun-ichi Kuroda;Kiyofumi Inamoto;Kou Hiroya
European Journal of Organic Chemistry 2009 Volume 2009( Issue 14) pp:2251-2261
Publication Date(Web):
DOI:10.1002/ejoc.200900067
Abstract
Catalytic activities of NHC-derived nickel–pincer complexes for the Suzuki–Miyaura coupling reactions of aryl/alkenyl tosylates and mesylates are described. In the presence of a catalytic amount of nickelacycle 1a, a wide array of tosylates and mesylates reacted with several aryl- and alkenylboronic acids to afford the coupling products, generally in high yields. Fine tuning of the reaction conditions for each class of electrophiles was achieved only by choosing the appropriate reaction medium (DME for tosylates, dioxane for mesylates).(© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2009)
Co-reporter:Yusuke Iijima, Asami Munakata, Kazuo Shin-ya, A. Ganesan, Takayuki Doi, Takashi Takahashi
Tetrahedron Letters 2009 50(24) pp: 2970-2972
Publication Date(Web):
DOI:10.1016/j.tetlet.2009.04.005
Co-reporter:Kiyofumi Inamoto, Yukari Arai, Kou Hiroya and Takayuki Doi
Chemical Communications 2008 (Issue 43) pp:5529-5531
Publication Date(Web):24 Sep 2008
DOI:10.1039/B811362A
The one-pot conversion of thioenols into benzo[b]thiophenes was achieved by using a simple palladium catalyst such as PdCl2 or PdCl2(cod).
Co-reporter:Seiji Kamioka, Sayaka Shimazu, Takayuki Doi and Takashi Takahashi
ACS Combinatorial Science 2008 Volume 10(Issue 5) pp:681
Publication Date(Web):August 7, 2008
DOI:10.1021/cc800089m
A combinatorial synthesis of 24-member RGD models was accomplished on polymer-support. Ortho-, meta-, and para-iodobenzylamines loaded on an aldehyde linker by reductive amination were coupled with RGD sequences and various ω-amino acids by a split-and-pool method. Palladium-catalyzed carbonylative macrolactamization of the polymer-supported cyclization precursors, followed by acid cleavage, provided conformationally restricted RGD model cyclic peptides.
Co-reporter:Seiji Kamioka, Sakae Sugiyama, Takashi Takahashi and Takayuki Doi
Organic & Biomolecular Chemistry 2010 - vol. 8(Issue 11) pp:NaN2536-2536
Publication Date(Web):2010/04/01
DOI:10.1039/C001228A
Synthesis and structure elucidation of optically active tri-, tetra-, and penta-azamacrocycles having 4-methoxyphenyl pendants are described. Regioselective ring opening of a nosylaziridine with secondary benzyl amines was repeatedly performed to afford the cyclization precursors. Intramolecular N-alkylation of N-(ω-haloalkyl) nosylamide provided tri-, tetra-, and penta-azamacrocycles. On the basis of our study of the tetra-azamacrocycle previously elucidated by X-ray single-crystal analysis and in solution by NMR analysis, we conclude that the tri-azamacrocycle does not mainly have a vase-type conformation because of the steric hindrance of the 4-methoxyphenyl groups but the penta-azamacrocycle has a vase-type conformation in CDCl3 and in CD2Cl2. The vase-type conformation of the penta-azamacrocycle is, however, not as much stable as that observed in the tetra-azamacrocycle because conformational flexibility of the penta-azamacrocycle was observed in deuterated benzene.
Co-reporter:Masahito Yoshida, Koya Saito, Yuta Fujino and Takayuki Doi
Chemical Communications 2012 - vol. 48(Issue 96) pp:NaN11798-11798
Publication Date(Web):2012/10/31
DOI:10.1039/C2CC37015H
Lewis base-catalyzed tandem acyl transfer–cyclization of acylated o-alkynoylphenols leading to 3-aroylflavones was developed. 9-Azajulolidine smoothly promoted the reaction of the aroyl derivatives at ambient temperature, and the structure-diversed synthesis of 3-aroylflavones with distinct substituents was achieved in moderate to excellent yields.
Co-reporter:Takayuki Doi, Masahito Yoshida, Kosuke Ohsawa, Kazuo Shin-ya, Motoki Takagi, Yoshinori Uekusa, Takumi Yamaguchi, Koichi Kato, Takatsugu Hirokawa and Tohru Natsume
Chemical Science (2010-Present) 2014 - vol. 5(Issue 5) pp:NaN1868-1868
Publication Date(Web):2014/01/06
DOI:10.1039/C3SC53237B
We have characterized the inhibition of the protein–protein interaction of the homodimer of proteasome assembling chaperone (PAC) 3 with thielocin B1, discovered from natural product sources. Molecular modeling using docking studies and molecular dynamics simulation suggested that thielocin B1 exhibits distinct binding positions on the interface of the homodimer and the complex can be stabilized by five interactive residues on PAC3. Thielocin B1 was synthesized for the first time and was utilized for nuclear magnetic resonance (NMR) titration of the PAC3 homodimer. The data revealed significant chemical shift perturbations observed in eight residues on PAC3. We also synthesized a spin-labeled derivative to observe paramagnetic relaxation enhancement (PRE) effects. As a result, distinct decrease of the intensities of the NH peaks was observed in sixteen residues of PAC3 in the presence of the spin-labeled derivative. Both the NMR experiments and further in silico docking studies have suggested that thielocin B1 approaches one face of the PAC3 homodimer, not the monomer, releasing the subunit of the interface of the PAC3 homodimer by a rare pre-dissociation-independent mechanism.
Co-reporter:Shinichiro Fuse, Kumiko Okada, Yusuke Iijima, Asami Munakata, Kazuhiro Machida, Takashi Takahashi, Motoki Takagi, Kazuo Shin-ya and Takayuki Doi
Organic & Biomolecular Chemistry 2011 - vol. 9(Issue 10) pp:NaN3833-3833
Publication Date(Web):2011/03/29
DOI:10.1039/C0OB01169J
The total synthesis of a natural productHDAC inhibitor, spiruchostatin B, was successfully achieved. A 5-step synthesis that included an asymmetric aldol reaction was carried out in an automated synthesizer to provide an (E)-(S)-3-hydroxy-7-thio-4-heptenoic acid segment that is the crucial structure of cysteine-containing, depsipeptidic natural products such as spiruchostatins, FK228, FR901375, and largazole for their inhibitory activity against HDACs.
Co-reporter:Kiyofumi Inamoto, Chisa Hasegawa, Kou Hiroya, Yoshinori Kondo, Takao Osako, Yasuhiro Uozumi and Takayuki Doi
Chemical Communications 2012 - vol. 48(Issue 23) pp:NaN2914-2914
Publication Date(Web):2012/01/19
DOI:10.1039/C2CC17401D
The coupling reaction of aryl iodides with arylboronic acids to give biaryl compounds can be efficiently performed without adding a transition metal catalyst. The key to success is the use of dimethyl carbonate as a solvent. This finding provides a new strategy for constructing a biaryl linkage.
Co-reporter:Kiyofumi Inamoto, Yukari Arai, Kou Hiroya and Takayuki Doi
Chemical Communications 2008(Issue 43) pp:NaN5531-5531
Publication Date(Web):2008/09/24
DOI:10.1039/B811362A
The one-pot conversion of thioenols into benzo[b]thiophenes was achieved by using a simple palladium catalyst such as PdCl2 or PdCl2(cod).
Co-reporter:Takayuki Doi, Kazuaki Shibata, Masahito Yoshida, Motoki Takagi, Masayuki Tera, Kazuo Nagasawa, Kazuo Shin-ya and Takashi Takahashi
Organic & Biomolecular Chemistry 2011 - vol. 9(Issue 2) pp:NaN393-393
Publication Date(Web):2010/10/21
DOI:10.1039/C0OB00513D
Total synthesis of the (S)-stereoisomer of telomestatin (1) was accomplished. (S)-Telomestatin exhibited potency four times that of the natural product, (R)-telomestatin, which was the most potent telomerase inhibitor previously reported. In the circular dichroism spectral analysis of the complexes possessing randomly structured single-stranded d[TTAGGG]4 oligonucleotide, (S)-telomestatin, like (R)-telomestatin, induced an antiparallel G-quadruplex structure. The melting temperature (Tm) value of the (S)-isomer complex was greater than that of the (R)-telomestatin complex. Therefore, it is concluded that the stereochemistry of the thiazoline of telomestatin is important to the binding ability of a G-quadruplex binder, and (S)-telomestatin as a G-quadruplex binder is more potent than the natural product.