Ned Porter

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Organization: Vanderbilt University
Department: Department of Chemistry
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Co-reporter:Connor R. Lamberson, Hubert Muchalski, Kari B. McDuffee, Keri A. Tallman, Libin Xu, Ned A. Porter
Chemistry and Physics of Lipids 2017 Volume 207, Part B(Volume 207, Part B) pp:
Publication Date(Web):1 October 2017
DOI:10.1016/j.chemphyslip.2017.01.006
The free radical chain autoxidation of cholesterol and the oxidation products formed, i.e. oxysterols, have been the focus of intensive study for decades. The peroxidation of sterol precursors to cholesterol such as 7-dehydrocholesterol (7-DHC) and desmosterol as well as their oxysterols has received less attention. The peroxidation of these sterol precursors can become important under circumstances in which genetic conditions or exposures to small molecules leads to an increase of these biosynthetic intermediates in tissues and fluids. 7-DHC, for example, has a propagation rate constant for peroxidation some 200 times that of cholesterol and this sterol is found at elevated levels in a devastating human genetic condition, Smith-Lemli-Opitz syndrome (SLOS). The propagation rate constants for peroxidation of sterol intermediates on the biosynthetic pathway to cholesterol were determined by a competition kinetic method, i.e. a peroxyl radical clock. In this work, propagation rate constants for lathosterol, zymostenol, desmosterol, 7-dehydrodesmosterol and other sterols in the Bloch and Kandutsch–Russell pathways are assigned and these rate constants are related to sterol structural features. Furthermore, potential oxysterols products are proposed for sterols whose oxysterol products have not been determined.
Co-reporter:Keri A. Tallman, Hye-Young H. Kim, Zeljka Korade, Thiago C. Genaro-Mattos, ... Ned A. Porter
Redox Biology 2017 Volume 12(Volume 12) pp:
Publication Date(Web):1 August 2017
DOI:10.1016/j.redox.2017.02.013
The formation of lipid electrophile-protein adducts is associated with many disorders that involve perturbations of cellular redox status. The identities of adducted proteins and the effects of adduction on protein function are mostly unknown and an increased understanding of these factors may help to define the pathogenesis of various human disorders involving oxidative stress. 7-Dehydrocholesterol (7-DHC), the immediate biosynthetic precursor to cholesterol, is highly oxidizable and gives electrophilic oxysterols that adduct proteins readily, a sequence of events proposed to occur in Smith-Lemli-Opitz syndrome (SLOS), a human disorder resulting from an error in cholesterol biosynthesis. Alkynyl lanosterol (a-Lan) was synthesized and studied in Neuro2a cells, Dhcr7-deficient Neuro2a cells and human fibroblasts. When incubated in control Neuro2a cells and control human fibroblasts, a-Lan completed the sequence of steps involved in cholesterol biosynthesis and alkynyl-cholesterol (a-Chol) was the major product formed. In Dhcr7-deficient Neuro2a cells or fibroblasts from SLOS patients, the biosynthetic transformation was interrupted at the penultimate step and alkynyl-7-DHC (a-7-DHC) was the major product formed. When a-Lan was incubated in Dhcr7-deficient Neuro2a cells and the alkynyl tag was used to ligate a biotin group to alkyne-containing products, protein-sterol adducts were isolated and identified. In parallel experiments with a-Lan and a-7-DHC in Dhcr7-deficient Neuro2a cells, a-7-DHC was found to adduct to a larger set of proteins (799) than a-Lan (457) with most of the a-Lan protein adducts (423) being common to the larger a-7-DHC set. Of the 423 proteins found common to both experiments, those formed from a-7-DHC were more highly enriched compared to a DMSO control than were those derived from a-Lan. The 423 common proteins were ranked according to the enrichment determined for each protein in the a-Lan and a-7-DHC experiments and there was a very strong correlation of protein ranks for the adducts formed in the parallel experiments.Download high-res image (230KB)Download full-size image
Co-reporter:Zeljka Korade; Hye-Young H. Kim; Keri A. Tallman; Wei Liu; Katalin Koczok; Istvan Balogh; Libin Xu; Karoly Mirnics;Ned A. Porter
Journal of Medicinal Chemistry 2016 Volume 59(Issue 3) pp:1102-1115
Publication Date(Web):January 20, 2016
DOI:10.1021/acs.jmedchem.5b01696
Well-established cell culture models were combined with new analytical methods to assess the effects of small molecules on the cholesterol biosynthesis pathway. The analytical protocol, which is based on sterol derivation with the dienolphile PTAD, was found to be reliable for the analysis of 7-DHC and desmosterol. The PTAD method was applied to the screening of a small library of pharmacologically active substances, and the effect of compounds on the cholesterol pathway was determined. Of some 727 compounds, over 30 compounds decreased 7-DHC in Dhcr7-deficient Neuro2a cells. The examination of chemical structures of active molecules in the screen grouped the compounds into distinct categories. In addition to statins, our screen found that SERMs, antifungals, and several antipsychotic medications reduced levels of 7-DHC. The activities of selected compounds were verified in human fibroblasts derived from Smith–Lemli–Opitz syndrome (SLOS) patients and linked to specific transformations in the cholesterol biosynthesis pathway.
Co-reporter:Hye-Young H. Kim, Zeljka Korade, Keri A. Tallman, Wei Liu, C. David Weaver, Karoly Mirnics, and Ned A. Porter
Chemical Research in Toxicology 2016 Volume 29(Issue 5) pp:892
Publication Date(Web):April 20, 2016
DOI:10.1021/acs.chemrestox.6b00054
A small library of pharmacologically active compounds (the NIH Clinical Collection) was assayed in Neuro2a cells to determine their effect on the last step in the biosynthesis of cholesterol, the transformation of 7-dehydrocholesterol (7-DHC) to cholesterol promoted by 7-dehydrocholesterol reductase, DHCR7. Of some 727 compounds in the NIH Clinical Collection, over 30 compounds significantly increased 7-DHC in Neuro2a cells when assayed at 1 μM. Active compounds that increased 7-DHC with a Z-score of +3 or greater generally gave rise to modest decreases in desmosterol and increases in lanosterol levels. Among the most active compounds identified in the library were the antipsychotic, antidepressant, and anxiolytic compounds that included perospirone, nefazodone, haloperidol, aripiprazole, trazodone, and buspirone. Fluoxetine and risperidone were also active at 1 μM, and another 10 compounds in this class of pharmaceuticals were identified in the screen at concentrations of 10 μM. Increased levels of 7-DHC are associated with Smith-Lemli-Opitz syndrome (SLOS), a human condition that results from a mutation in the gene that encodes DHCR7. The SLOS phenotype includes neurological deficits and congenital malformations, and it is linked to a higher incidence of autism spectrum disorder. The significance of the current study is that it identifies common pharmacological compounds that may induce a biochemical presentation similar to SLOS. Little is known about the side effects of elevated 7-DHC postdevelopmentally, and the elevated 7-DHC that results from exposure to these compounds may also be a confounder in the diagnosis of SLOS.
Co-reporter:H. Muchalski, L. Xu and N. A. Porter  
Organic & Biomolecular Chemistry 2015 vol. 13(Issue 4) pp:1249-1253
Publication Date(Web):14 Nov 2014
DOI:10.1039/C4OB02377C
The peroxidation of 7-dehydrocholesterol (7-DHC), a biosynthetic precursor to vitamin D3 and cholesterol, has been linked to the pathophysiology of Smith–Lemli–Optiz syndrome (SLOS), a devastating human disorder. In SLOS, 7-DHC plasma and tissue levels are elevated because of defects in the enzyme that convert it to cholesterol. α-Tocopherol can mediate the peroxidation of 7-DHC under certain circumstances and this prompted us to investigate the kinetic isotope effect (KIE) during this process. Thus, 9,14-d2-7-DHC was synthesized using a photochemical cyclization of deuterium-reinforced previtamin D3 (retro to its biosynthesis). Subsequently, we carried out co-oxidation of 9,14-h2-25,26,26,26,27,27,27-d7- and 9,14-d2-7-DHC in the presence of α-tocopherol under conditions that favor TMP. By monitoring the products formed from each precursor using mass spectrometry, the KIE for the hydrogen (deuterium) atom removal at C9 was found to be 21 ± 1. This large KIE value indicates that tunneling plays a role in the hydrogen atom transfer step in the tocopherol-mediated peroxidation of 7-DHC.
Co-reporter:William N. Beavers ; Remigiusz Serwa ; Yuki Shimozu ; Keri A. Tallman ; Melissa Vaught ; Esha D. Dalvie ; Lawrence J. Marnett ;Ned A. Porter
Journal of the American Chemical Society 2014 Volume 136(Issue 32) pp:11529-11539
Publication Date(Web):July 17, 2014
DOI:10.1021/ja506038v
Lipid and lipid metabolite profiling are important parameters in understanding the pathogenesis of many diseases. Alkynylated polyunsaturated fatty acids are potentially useful probes for tracking the fate of fatty acid metabolites. The nonenzymatic and enzymatic oxidations of ω-alkynyl linoleic acid and ω-alkynyl arachidonic acid were compared to that of linoleic and arachidonic acid. There was no detectable difference in the primary products of nonenzymatic oxidation, which comprised cis,trans-hydroxy fatty acids. Similar hydroxy fatty acid products were formed when ω-alkynyl linoleic acid and ω-alkynyl arachidonic acid were reacted with lipoxygenase enzymes that introduce oxygen at different positions in the carbon chains. The rates of oxidation of ω-alkynylated fatty acids were reduced compared to those of the natural fatty acids. Cyclooxygenase-1 and -2 did not oxidize alkynyl linoleic but efficiently oxidized alkynyl arachidonic acid. The products were identified as alkynyl 11-hydroxy-eicosatetraenoic acid, alkynyl 11-hydroxy-8,9-epoxy-eicosatrienoic acid, and alkynyl prostaglandins. This deviation from the metabolic profile of arachidonic acid may limit the utility of alkynyl arachidonic acid in the tracking of cyclooxygenase-based lipid oxidation. The formation of alkynyl 11-hydroxy-8,9-epoxy-eicosatrienoic acid compared to alkynyl prostaglandins suggests that the ω-alkyne group causes a conformational change in the fatty acid bound to the enzyme, which reduces the efficiency of cyclization of dioxalanyl intermediates to endoperoxide intermediates. Overall, ω-alkynyl linoleic acid and ω-alkynyl arachidonic acid appear to be metabolically competent surrogates for tracking the fate of polyunsaturated fatty acids when looking at models involving autoxidation and oxidation by lipoxygenases.
Co-reporter:Hubert Muchalski; Alexander J. Levonyak; Libin Xu; Keith U. Ingold;Ned A. Porter
Journal of the American Chemical Society 2014 Volume 137(Issue 1) pp:94-97
Publication Date(Web):December 22, 2014
DOI:10.1021/ja511434j
Hydrogen atom transfer is central to many important radical chain sequences. We report here a method for determination of both the primary and secondary isotope effects for symmetrical substrates by the use of NMR. Intramolecular competition reactions were carried out on substrates having an increasing number of deuterium atoms at symmetry-related sites. Products that arise from peroxyl radical abstraction at each position of the various substrates reflect the competition rates for H(D) abstraction. The primary KIE for autoxidation of tetralin was determined to be 15.9 ± 1.4, a value that exceeds the maximum predicted by differences in H(D) zero-point energies (∼7) and strongly suggests that H atom abstraction by the peroxyl radical occurs with substantial quantum mechanical tunneling.
Co-reporter:Katherine Windsor, Thiago C. Genaro-Mattos, Sayuri Miyamoto, Donald F. Stec, Hye-Young H. Kim, Keri A. Tallman, and Ned A. Porter
Chemical Research in Toxicology 2014 Volume 27(Issue 10) pp:1757
Publication Date(Web):September 3, 2014
DOI:10.1021/tx500229h
Cholesterol undergoes ozonolysis to afford a variety of oxysterol products, including cholesterol-5,6-epoxide (CholEp) and the isomeric aldehydes secosterol A (seco A) and secosterol B (seco B). These oxysterols display numerous important biological activities, including protein adduction; however, much remains to be learned about the identity of the reactive species and the range of proteins modified by these oxysterols. Here, we synthesized alkynyl derivatives of cholesterol-derived oxysterols and employed a straightforward detection method to establish secosterols A and B as the most protein-reactive of the oxysterols tested. Model adduction studies with an amino acid, peptides, and proteins provide evidence for the potential role of secosterol dehydration products in protein adduction. Hydrophobic separation methods—Folch extraction and solid phase extraction (SPE)—were successfully applied to enrich oxysterol-adducted peptide species, and LC-MS/MS analysis of a model peptide–seco adduct revealed a unique fragmentation pattern (neutral loss of 390 Da) for that species. Coupling a hydrophobic enrichment method with proteomic analysis utilizing characteristic fragmentation patterns facilitates the identification of secosterol-modified peptides and proteins in an adducted protein. More broadly, these improved enrichment methods may give insight into the role of oxysterols and ozone exposure in the pathogenesis of a variety of diseases, including atherosclerosis, Alzheimer’s disease, Parkinson’s disease, and asthma.
Co-reporter:Connor R. Lamberson ; Libin Xu ; Hubert Muchalski ; J. Rafael Montenegro-Burke ; Vadim V. Shmanai ; Andrei V. Bekish ; John A. McLean ; Catherine F. Clarke ; Mikhail S. Shchepinov ;Ned A. Porter
Journal of the American Chemical Society 2013 Volume 136(Issue 3) pp:838-841
Publication Date(Web):December 31, 2013
DOI:10.1021/ja410569g
Substitution of −CD2– at the reactive centers of linoleic and linolenic acids reduces the rate of abstraction of D by a tocopheryl radical by as much as 36-fold, compared to the abstraction of H from a corresponding −CH2– center. This H atom transfer reaction is the rate-determining step in the tocopherol-mediated peroxidation of lipids in human low-density lipoproteins, a process that has been linked to coronary artery disease. The unanticipated large kinetic isotope effects reported here for the tocopherol-mediated oxidation of linoleic and linolenic acids and esters suggests that tunneling makes this process favorable.
Co-reporter:Ned A. Porter
The Journal of Organic Chemistry 2013 Volume 78(Issue 8) pp:3511-3524
Publication Date(Web):February 26, 2013
DOI:10.1021/jo4001433
This Perspective describes advances from the author’s laboratory on the free radical reactions of organic compounds with molecular oxygen. Polyunsaturated fatty acids (PUFAs) and sterols are particularly prone to undergo radical chain oxidation, and evidence suggests that this process, known as lipid peroxidation, occurs in vivo under a variety of conditions that are the result of an oxidative stress. Cyclic peroxides, hydroperoxides, and epoxy alcohols are major products formed from peroxidation, and the basic mechanisms of product formation are now reasonably well understood. These mechanisms include reversible addition of oxygen to carbon radicals, rearrangement and cyclization of allyl and pentadienyl peroxyl radicals, and homolytic substitution of carbon radicals on the peroxide bond. A physical organic approach to the problem of free radicals in biology and medicine is highlighted in this Perspective with stereochemical, kinetic, and extrathermodynamic probes applied to the study of mechanism. A radical clock permits the determination of free radical propagation rate constants, and 7-dehydrocholesterol, the immediate biosynthetic precursor of cholesterol, is found by this clock to be one of the most oxidizable lipids known. The consequences of the extreme reactivity of 7-dehydrocholesterol on human health is the focus of a current research theme in the author’s laboratory.
Co-reporter:Zeljka Korade;Libin Xu;Karoly Mirnics;Ned A. Porter
Journal of Inherited Metabolic Disease 2013 Volume 36( Issue 1) pp:113-122
Publication Date(Web):2013/01/01
DOI:10.1007/s10545-012-9504-z
7-Dehydrocholesterol (7-DHC) accumulates in tissues and fluids of patients with Smith-Lemli-Opitz syndrome (SLOS), which is caused by mutations in the gene encoding 3β-hydroxysterol-Δ7-reductase (DHCR7). We recently reported that 7-DHC is the most reactive lipid molecule toward free radical oxidation (lipid peroxidation) and 14 oxysterols have been identified as products of oxidation of 7-DHC in solution. As the high oxidizability of 7-DHC may lead to systemic oxidative stress in SLOS patients, we report here lipid biomarkers of oxidative stress in a Dhcr7-KO mouse model of SLOS, including oxysterols, isoprostanes (IsoPs), and neuroprostanes (NeuroPs) that are formed from the oxidation of 7-DHC, arachidonic acid and docosahexaenoic acid, respectively. In addition to a previously described oxysterol, 3β,5α-dihydroxycholest-7-en-6-one (DHCEO), we provide evidence for the chemical structures of three new oxysterols in the brain and/or liver tissue of Dhcr7-KO mice, two of which were quantified. We find that levels of IsoPs and NeuroPs are also elevated in brain and/or liver tissues of Dhcr7-KO mice relative to matching WT mice. While IsoPs and NeuroPs have been established as a reliable measurement of lipid peroxidation and oxidative stress in vivo, we show that in this genetic SLOS mouse model, 7-DHC-derived oxysterols are present at much higher levels than IsoPs and NeuroPs and thus are better markers of lipid oxidation and related oxidative stress.
Co-reporter:Matías N. Möller ; Duane M. Hatch ; Hye-Young H. Kim ;Ned A. Porter
Journal of the American Chemical Society 2012 Volume 134(Issue 40) pp:16773-16780
Publication Date(Web):September 18, 2012
DOI:10.1021/ja307215z
Tyrosine-derived hydroperoxides are formed in peptides and proteins exposed to enzymatic or cellular sources of superoxide and oxidizing species as a result of the nearly diffusion-limited reaction between tyrosyl radical and superoxide. However, the structure of these products, which informs their reactivity in biology, has not been unequivocally established. We report here the complete characterization of the products formed in the addition of superoxide, generated from xanthine oxidase, to several peptide-derived tyrosyl radicals, formed from horseradish peroxidase. RP-HPLC, LC-MS, and NMR experiments indicate that the primary stable products of superoxide addition to tyrosyl radical are para-hydroperoxide derivatives (para relative to the position of the OH in tyrosine) that can be reduced to the corresponding para-alcohol. In the case of glycyl-tyrosine, a stable 3-(1-hydroperoxy-4-oxocyclohexa-2,5-dien-1-yl)-l-alanine was formed. In tyrosyl-glycine and Leu-enkephalin, which have N-terminal tyrosines, bicyclic indolic para-hydroperoxide derivatives were formed ((2S,3aR,7aR)-3a-hydroperoxy-6-oxo-2,3,3a,6,7,7a-hexahydro-1H-indole-2-carboxylic acid) by the conjugate addition of the free amine to the cyclohexadienone. It was also found that significant amounts of the para-OH derivative were generated from the hydroxyl radical, formed on exposure of tyrosine-containing peptides to Fenton conditions. The para-OOH and para-OH derivatives are much more reactive than other tyrosine oxidation products and may play important roles in physiology and disease.
Co-reporter:Huiyong Yin, Libin Xu, and Ned A. Porter
Chemical Reviews 2011 Volume 111(Issue 10) pp:5944
Publication Date(Web):August 23, 2011
DOI:10.1021/cr200084z
Co-reporter:Tae-gyu Nam, Jin-Mo Ku, Christopher L. Rector, Hoyoung Choi, Ned A. Porter and Byeong-Seon Jeong  
Organic & Biomolecular Chemistry 2011 vol. 9(Issue 24) pp:8475-8482
Publication Date(Web):22 Sep 2011
DOI:10.1039/C1OB05144J
A few facile synthetic pathways for bicyclic aminopyridinol antioxidants are presented. Attachment of a long alkyl chain to the bicyclic pyridinol scaffold was established using ester linkage. Non-substituted pyrrolopyridinols and 1,3-oxazine-fused pyridinols were also synthesized as novel antioxidant scaffolds. Antioxidant activities were measured by a radical clock method and new compounds prepared are comparable to the best bicyclic aminopyridinol antioxidants.
Co-reporter:Tae-gyu Nam, Jin-Mo Ku, Hyeung-geun Park, Ned A. Porter and Byeong-Seon Jeong  
Organic & Biomolecular Chemistry 2011 vol. 9(Issue 6) pp:1749-1755
Publication Date(Web):03 Dec 2010
DOI:10.1039/C0OB00991A
A new synthetic route to pyrrolopyridinol antioxidants from easily accessible pyridoxine was developed which includes phase-transfer catalytic alkylation and intramolecular Cu(I)-catalyzed amination as key steps.
Co-reporter:Roman Shchepin ; Matias N. Möller ; Hye-young H. Kim ; Duane M. Hatch ; Silvina Bartesaghi ; Balaraman Kalyanaraman ; Rafael Radi ;Ned A. Porter
Journal of the American Chemical Society 2010 Volume 132(Issue 49) pp:17490-17500
Publication Date(Web):November 19, 2010
DOI:10.1021/ja106503a
Free radical co-oxidation of polyunsaturated lipids with tyrosine or phenolic analogues of tyrosine gave rise to lipid peroxide−tyrosine (phenol) adducts in both aqueous micellar and organic solutions. The novel adducts were isolated and characterized by 1D and 2D NMR spectroscopy as well as by mass spectrometry (MS). The spectral data suggest that the polyunsaturated lipid peroxyl radicals give stable peroxide coupling products exclusively at the para position of the tyrosyl (phenoxy) radicals. These adducts have characteristic 13C chemical shifts at 185 ppm due to the cross-conjugated carbonyl of the phenol-derived cyclohexadienone. The primary peroxide adducts subsequently undergo intramolecular Diels−Alder (IMDA) cyclization, affording a number of diastereomeric tricyclic adducts that have characteristic carbonyl 13C chemical shifts at ∼198 ppm. All of the NMR HMBC and HSQC correlations support the structure assignments of the primary and Diels−Alder adducts, as does MS collision-induced dissociation data. Kinetic rate constants and activation parameters for the IMDA reaction were determined, and the primary adducts were reduced with cuprous ion to give a phenol-derived 4-hydroxycyclohexa-2,5-dienone. No products from adduction of peroxyls at the phenolic ortho position were found in either the primary or cuprous reduction product mixtures. These studies provide a framework for understanding the nature of lipid−protein adducts formed by peroxyl−tyrosyl radical−radical termination processes. Coupling of lipid peroxyl radicals with tyrosyl radicals leads to cyclohexenone and cyclohexadienone adducts, which are of interest in and of themselves since, as electrophiles, they are likely targets for protein nucleophiles. One consequence of lipid peroxyl reactions with tyrosyls may therefore be protein−protein cross-links via interprotein Michael adducts.
Co-reporter:Libin Xu ; Zeljka Korade ;Ned A. Porter
Journal of the American Chemical Society 2010 Volume 132(Issue 7) pp:2222-2232
Publication Date(Web):February 1, 2010
DOI:10.1021/ja9080265
Free radical chain oxidation of highly oxidizable 7-dehydrocholesterol (7-DHC), initiated by 2,2′-azobis(4-methoxy-2,4-dimethylvaleronitrile), was carried out at 37 °C in benzene for 24 h. Fifteen oxysterols derived from 7-DHC were isolated and characterized with 1D and 2D NMR spectroscopy and mass spectrometry. A mechanism that involves abstraction of hydrogen atoms at C-9 and/or C-14 is proposed to account for the formation of all of the oxysterols and the reaction progress profile. In either the H-9 or H-14 mechanism, a pentadienyl radical intermediate is formed after abstraction of H-9 or H-14 by a peroxyl radical. This step is followed by the well-precedented transformations observed in peroxidation reactions of polyunsaturated fatty acids such as oxygen addition, peroxyl radical 5-exo cyclization, and SHi carbon radical attack on the peroxide bond. The mechanism for peroxidation of 7-DHC also accounts for the formation of numerous oxysterol natural products isolated from fungal species, marine sponges, and cactaceous species. In a cell viability test, the oxysterol mixture from 7-DHC peroxidation was found to be cytotoxic to Neuro2a neuroblastoma cells in the micromolar concentration range. We propose that the high reactivity of 7-DHC and the oxysterols generated from its peroxidation may play important roles in the pathogenesis of Smith−Lemli−Opitz syndrome, X-linked dominant chondrodysplasia punctata, and cerebrotendinous xanthomatosis, all of these being metabolic disorders characterized by an elevated level of 7-DHC.
Co-reporter:Wei Liu, Huiyong Yin, Yoko Ogawa Akazawa, Yasukazu Yoshida, Etsuo Niki and Ned A. Porter
Chemical Research in Toxicology 2010 Volume 23(Issue 5) pp:986
Publication Date(Web):April 28, 2010
DOI:10.1021/tx1000943
The primary products from peroxidation of linoleate in biological tissues and fluids are the hydroperoxy octadecadienoates, and the products normally assayed, after reduction of the hydroperoxides, are the corresponding hydroxy octadecadienoates (HODEs). The HODEs are found in tissues and fluids as a mixture of Z,E and E,E stereoisomers. Two regioisomeric sets of Z,E and E,E stereoisomers are normally observed with substitution at the 9- and 13-positions of the 18-carbon chain. The Z,E/E,E product ratio has proved to be a useful means for assessing the reducing capacity of the medium undergoing peroxidation. The HODE Z,E/E,E product ratios previously reported for tissues such as liver and brain vary from 0.5 to 2.0, and plasma ratios are somewhat higher, between 2.0 and 3.0. The reported literature protocols for HODE assay in tissues involve homogenization, reduction with sodium borohydride in the presence of BHT, and ester hydrolysis with KOH to give the free HODEs. This is followed by either reverse-phase HPLC of the free acid HODEs or by conversion to TMS derivatives and GC-MS. When sodium borohydride is replaced in the protocol by triphenylphosphine, a gentler reducing agent, HODE Z,E/E,E product ratios are much higher, and lower total HODE levels of are found. It is proposed that inclusion of sodium borohydride in the isolation procedures leads to ex vivo reactions that are avoided if triphenylphosphine is used as the reducing agent. Modified protocols for HODE analyses (tissue and plasma methods #2) are described that should be used for assays of tissues and fluids.
Co-reporter:Libin Xu ; Todd A. Davis ;Ned A. Porter
Journal of the American Chemical Society 2009 Volume 131(Issue 36) pp:13037-13044
Publication Date(Web):August 25, 2009
DOI:10.1021/ja9029076
Rate constants for autoxidation propagation of several unsaturated lipids in benzene solution at 37 °C and in phosphatidylcholine liposomes were determined by a linoleate radical clock. This radical clock is based on competition between hydrogen atom abstraction by an intermediate peroxyl radical derived from linoleic acid that leads to a trans,cis-conjugated hydroxyoctadecadienoic product and β-fragmentation of the same peroxyl that gives the trans,trans-product hydroxyoctadecadienoic acid. Rate constants determined by this approach in solution relative to linoleic acid (kp = 62 M−1 s−1) were: arachidonic acid (kp = 197 ± 13 M−1 s−1), eicosapentaenoic acid (kp = 249 ± 16 M−1 s−1), docosahexaenoic acid (kp = 334 ± 37 M−1 s−1), cholesterol (kp= 11 ± 2 M−1 s−1), and 7-dehydrocholesterol (kp= 2260 ± 40 M−1 s−1). Free radical oxidations of multilamellar and unilamellar liposomes of various mixtures of glycerophosphatidylcholine molecular species were also carried out. In some experiments, cholesterol or 7-dehydrocholesterol was incorporated into the lipid mixture undergoing oxidation. A phosphatidylcholine bearing a linoleate ester at sn-2 was a component of each liposome peroxidation reaction and the ratio of trans,cis/trans,trans (t,c/t,t)-conjugated diene oxidation products formed from this phospholipid was determined for each oxidation reaction. This t,c/t,t-product ratio from linoleate was used to “clock” liposome constituents as hydrogen atom donors in the lipid bilayer. Application of this lipid bilayer radical clock gives relative autoxidation propagation rate constants of arachidonate (20:4), eicosapentaenoate (20:5), docosahexaenoate (22:6), and 7-dehydrocholesterol to be 115 ± 7, 145 ± 8, 172 ± 13, and 832 ± 86, respectively, a reactivity trend that parallels the one in solution. We also conclude from the liposome oxidations that linoleate peroxyl radicals at different positions on the eighteen-carbon chain (at C-9 and C-13) have different kinetic properties. This is in contrast to the results of solution oxidations of linoleate in which the C-9 and C-13 peroxyl radicals have similar reactivities. We suggest that peroxyl radical β-scission depends on solvent polarity and the polarity of the local environment of peroxyl radicals in liposomal oxidations depends on the position of the peroxyl radical on the 18-carbon chain.
Co-reporter:Christopher L. Rector, Donald F. Stec, Alan R. Brash and Ned A. Porter
Chemical Research in Toxicology 2007 Volume 20(Issue 11) pp:1582
Publication Date(Web):October 2, 2007
DOI:10.1021/tx700120r
Monohydroxy-γ-linolenates and arachidonates were oxidized in the presence of α-tocopherol and free radical initiators at 37 °C. The dihydroxylinolenate products were analyzed and identified by use of a combination of liquid chromatography, mass spectrometry, and NMR techniques. A mechanism for the formation of the dihydroxylinolenates is proposed based on product analysis of oxidations using varied concentrations of α-tocopherol. The mechanism for monohydroxyarachidonate oxidation is the same as that of monohydroxylinolenates. However, arachidonate diol analysis is more complicated because of the formation of additional regioisomers that are a result of the parent arachidonate possessing multiple bisallylic hydrogens.
Co-reporter:Jennifer R Seal, Christine M Havrilla, Ned A Porter, David L Hachey
Journal of the American Society for Mass Spectrometry 2003 Volume 14(Issue 8) pp:872-880
Publication Date(Web):August 2003
DOI:10.1016/S1044-0305(03)00339-8
Coordination ionspray mass spectrometry (CIS-MS) is a useful tool in the detection and identification of cholesterol ester and phospholipid hydroperoxides and diacyl peroxides. Extensive studies of a series of cholesterol esters using CIS-MS revealed the following: (1) Cholesterol esters with equal number of double bonds as the internal standard showed a linear relative response in the mass spectrometer while compounds with non-equal numbers of double bonds gave a nonlinear relative response. (2) Complex adducts containing cholesterol ester, silver ion, AgF, AgBF4, and 2-propanoxide form when silver is in molar excess of cholesterol esters, reducing the [M + Ag]+ signal. (3) In a mixture of cholesterol esters where silver is limiting, Ch22:6 and Ch20:4 bind to silver at the expense of Ch18:2 and have a higher signal in the mass spectrometer. (4) In a mixture of cholesterol esters where silver concentration is twofold greater than total cholesterol ester concentration, Ch22:6 and Ch20:4 form large complex adducts more frequently than Ch18:2 and have a lower signal in the mass spectrometer.
Co-reporter:Maikel Wijtmans;Derek A. Pratt Dr.;Luca Valgimigli Dr.;Gino A. DiLabio Dr.;Gian Franco Pedulli Dr.;Ned A. Porter Dr.
Angewandte Chemie 2003 Volume 115(Issue 36) pp:
Publication Date(Web):17 SEP 2003
DOI:10.1002/ange.200351881

Das Einfügen von Stickstoff in Phenolringe führt zu Verbindungen mit sehr geringen phenolischen O-H-Dissoziationsenthalpien und damit zu hoher Reaktivität gegenüber Peroxylradikalen. Die Verbindungen sind jedoch an Luft recht stabil. Die 3-Pyridinole 1 und 2 sind sehr effektive Peroxylradikalfänger und kettenabbrechende Antioxidantien.

Co-reporter:Maikel Wijtmans;Derek A. Pratt Dr.;Luca Valgimigli Dr.;Gino A. DiLabio Dr.;Gian Franco Pedulli Dr.;Ned A. Porter Dr.
Angewandte Chemie 2003 Volume 115(Issue 40) pp:
Publication Date(Web):15 OCT 2003
DOI:10.1002/ange.200390626
Co-reporter:Maikel Wijtmans;Derek A. Pratt Dr.;Luca Valgimigli Dr.;Gino A. DiLabio Dr.;Gian Franco Pedulli Dr.;Ned A. Porter Dr.
Angewandte Chemie International Edition 2003 Volume 42(Issue 40) pp:
Publication Date(Web):15 OCT 2003
DOI:10.1002/anie.200390599
Co-reporter:Maikel Wijtmans;Derek A. Pratt Dr.;Luca Valgimigli Dr.;Gino A. DiLabio Dr.;Gian Franco Pedulli Dr.;Ned A. Porter Dr.
Angewandte Chemie International Edition 2003 Volume 42(Issue 36) pp:
Publication Date(Web):17 SEP 2003
DOI:10.1002/anie.200351881

The incorporation of nitrogen in the phenolic ring leads to compounds with very low phenolic OH bond dissociation enthalpies, and thus high reactivities towards peroxyl radicals, but which are reasonably stable to direct reactions with air. The 3-pyridinols 1 and 2 are extremely effective peroxyl-radical-trapping chain-breaking antioxidants.

Co-reporter:Huiyong Yin, David L Hachey, Ned A Porter
Journal of the American Society for Mass Spectrometry 2001 Volume 12(Issue 4) pp:449-455
Publication Date(Web):April 2001
DOI:10.1016/S1044-0305(01)00205-7
Organic peroxides have significance in organic synthesis and biological processes. Characterization of these compounds with weak O–O bonds is sometimes difficult due to their thermal instability and sensitivity to acid or base. Coordination of diacyl peroxides with AgBF4 provides a means for analysis of these compounds by coordination ionspray tandem mass spectrometry (CIS-MS/MS). Precursor ion (Q1) scans of acetyl benzoyl peroxide give two Ag+ adducts, [M + Ag + solvent]+ and [M + Ag + M]+. These silver ion adducts can be selectively dissociated (CID) to give unique structural information about the analyte. Decomposition of the [M + Ag + solvent]+ adduct generates fragmentation products due to apparent homolytic cleavage of the O–O bond followed by decarboxylation of the resultant radicals. The bis-diacylperoxide complex, [M + Ag + M]+ gives CID pathways that involve homolysis of the O–O bond and free radical cross-coupling of the two diacyl peroxides coordinated to the silver ion, i.e. formation of dibenzoyl peroxide, phenyl benzoate, and biphenyl from acetyl benzoyl peroxide. The observation of free radical CID modes is uncommon in mass spectrometry but these pathways are consistent with well-known solution and gas phase processes for peroxide compounds. The proposed fragmentation pathways have been supported by experiments with 18O and deuterated substrates. This technique can be applied to analyze diacyl peroxides with different substituents as well.
Co-reporter:Zeljka Korade, Libin Xu, Fiona E. Harrison, Refayat Ahsen, Sarah E. Hart, Oakleigh M. Folkes, Károly Mirnics, Ned A. Porter
Biological Psychiatry (1 February 2014) Volume 75(Issue 3) pp:215-222
Publication Date(Web):1 February 2014
DOI:10.1016/j.biopsych.2013.06.013
BackgroundSmith-Lemli-Opitz syndrome (SLOS) is an inborn error of cholesterol biosynthesis characterized by diminished cholesterol and increased 7-dehydrocholesterol (7-DHC) levels. 7-Dehydrocholesterol is highly reactive, giving rise to biologically active oxysterols.Methods7-DHC-derived oxysterols were measured in fibroblasts from SLOS patients and an in vivo SLOS rodent model using high-performance liquid chromatography tandem mass spectrometry. Expression of lipid biosynthesis genes was ascertained by quantitative polymerase chain reaction and Western blot. The effects of an antioxidant mixture of vitamin A, coenzyme Q10, vitamin C, and vitamin E were evaluated for their potential to reduce formation of 7-DHC oxysterols in fibroblast from SLOS patients. Finally, the effect of maternal feeding of vitamin E enriched diet was ascertained in the brain and liver of newborn SLOS mice.ResultsIn cultured human SLOS fibroblasts, the antioxidant mixture led to decreased levels of the 7-DHC-derived oxysterol, 3β,5α-dihydroxycholest-7-en-6-one. Furthermore, gene expression changes in SLOS human fibroblasts were normalized with antioxidant treatment. The active ingredient appeared to be vitamin E, as even at low concentrations, it significantly decreased 3β,5α-dihydroxycholest-7-en-6-one levels. In addition, analyzing a mouse SLOS model revealed that feeding a vitamin E enriched diet to pregnant female mice led to a decrease in oxysterol formation in brain and liver tissues of the newborn Dhcr7-knockout pups.ConclusionsConsidering the adverse effects of 7-DHC-derived oxysterols in neuronal and glial cultures and the positive effects of antioxidants in patient cell cultures and the transgenic mouse model, we believe that preventing formation of 7-DHC oxysterols is critical for countering the detrimental effects of DHCR7 mutations.
Co-reporter:H. Muchalski, L. Xu and N. A. Porter
Organic & Biomolecular Chemistry 2015 - vol. 13(Issue 4) pp:NaN1253-1253
Publication Date(Web):2014/11/14
DOI:10.1039/C4OB02377C
The peroxidation of 7-dehydrocholesterol (7-DHC), a biosynthetic precursor to vitamin D3 and cholesterol, has been linked to the pathophysiology of Smith–Lemli–Optiz syndrome (SLOS), a devastating human disorder. In SLOS, 7-DHC plasma and tissue levels are elevated because of defects in the enzyme that convert it to cholesterol. α-Tocopherol can mediate the peroxidation of 7-DHC under certain circumstances and this prompted us to investigate the kinetic isotope effect (KIE) during this process. Thus, 9,14-d2-7-DHC was synthesized using a photochemical cyclization of deuterium-reinforced previtamin D3 (retro to its biosynthesis). Subsequently, we carried out co-oxidation of 9,14-h2-25,26,26,26,27,27,27-d7- and 9,14-d2-7-DHC in the presence of α-tocopherol under conditions that favor TMP. By monitoring the products formed from each precursor using mass spectrometry, the KIE for the hydrogen (deuterium) atom removal at C9 was found to be 21 ± 1. This large KIE value indicates that tunneling plays a role in the hydrogen atom transfer step in the tocopherol-mediated peroxidation of 7-DHC.
Co-reporter:Tae-gyu Nam, Jin-Mo Ku, Christopher L. Rector, Hoyoung Choi, Ned A. Porter and Byeong-Seon Jeong
Organic & Biomolecular Chemistry 2011 - vol. 9(Issue 24) pp:NaN8482-8482
Publication Date(Web):2011/09/22
DOI:10.1039/C1OB05144J
A few facile synthetic pathways for bicyclic aminopyridinol antioxidants are presented. Attachment of a long alkyl chain to the bicyclic pyridinol scaffold was established using ester linkage. Non-substituted pyrrolopyridinols and 1,3-oxazine-fused pyridinols were also synthesized as novel antioxidant scaffolds. Antioxidant activities were measured by a radical clock method and new compounds prepared are comparable to the best bicyclic aminopyridinol antioxidants.
Co-reporter:Tae-gyu Nam, Jin-Mo Ku, Hyeung-geun Park, Ned A. Porter and Byeong-Seon Jeong
Organic & Biomolecular Chemistry 2011 - vol. 9(Issue 6) pp:NaN1755-1755
Publication Date(Web):2010/12/03
DOI:10.1039/C0OB00991A
A new synthetic route to pyrrolopyridinol antioxidants from easily accessible pyridoxine was developed which includes phase-transfer catalytic alkylation and intramolecular Cu(I)-catalyzed amination as key steps.