Co-reporter:Gang Shen;Hong Zhang;Chunrong Yang;Qianfan Yang
Analytical Chemistry January 3, 2017 Volume 89(Issue 1) pp:548-551
Publication Date(Web):December 13, 2016
DOI:10.1021/acs.analchem.6b04247
Thrombin plays a critical role in hemostasis and hemolysis. It is of high importance to develop a system toward thrombin detection with high sensitivity and high selectivity for both research and clinical diagnosis applications. In this paper, we developed a thrombin detection assay by taking advantage of the novel signal amplified strategy based on the chiral supramolecular assembly in physiological K+ background. This assay could detect thrombin as low concentration as about 2 pM and provided a highly specific selectivity among several common interferences. Furthermore, the assay can discriminate thrombin from other nonspecific analogous proteins with high selectivity and can be used to detect thrombin in diluted real human serum samples, which suggested its great potential for rapid detection of thrombin in the clinic.
Co-reporter:Fengmin Yang;Xin Sun;Lixia Wang;Qian Li;Aijiao Guan;Gang Shen
RSC Advances (2011-Present) 2017 vol. 7(Issue 82) pp:51965-51969
Publication Date(Web):2017/11/07
DOI:10.1039/C7RA09870G
C-myc promoter G-quadruplex is a very important target for developing anti-cancer drugs. However, highly selective recognition of DNA c-myc G-quadruplex with parallel configuration is also a very challenging problem. Here, we showed a new type of N-containing alkaloid, 3,8a-disubstituted indolizinone, which adopted a distorted configuration. 6-Methyl-3-(naphthalen-2-yl)-8a-(4-methylpyridin-2-yl)-indolizinone could selectively recognize DNA c-myc G-quadruplex leading to an obvious fluorescence enhancement by 11-fold, and meanwhile the G-quadruplex can be stabilized up to 90 °C. Further, it could down-regulate the transcription of oncogene c-myc in both human non-small cell line (A549) and human laryngeal epithelial cell line (Hep-2).
Co-reporter:Fengmin Yang;Xin Sun;Lixia Wang;Qian Li;Aijiao Guan;Gang Shen
RSC Advances (2011-Present) 2017 vol. 7(Issue 82) pp:51965-51969
Publication Date(Web):2017/11/07
DOI:10.1039/C7RA09870G
C-myc promoter G-quadruplex is a very important target for developing anti-cancer drugs. However, highly selective recognition of DNA c-myc G-quadruplex with parallel configuration is also a very challenging problem. Here, we showed a new type of N-containing alkaloid, 3,8a-disubstituted indolizinone, which adopted a distorted configuration. 6-Methyl-3-(naphthalen-2-yl)-8a-(4-methylpyridin-2-yl)-indolizinone could selectively recognize DNA c-myc G-quadruplex leading to an obvious fluorescence enhancement by 11-fold, and meanwhile the G-quadruplex can be stabilized up to 90 °C. Further, it could down-regulate the transcription of oncogene c-myc in both human non-small cell line (A549) and human laryngeal epithelial cell line (Hep-2).
Co-reporter:Fengmin Yang;Xin Sun;Lixia Wang;Qian Li;Aijiao Guan;Gang Shen
RSC Advances (2011-Present) 2017 vol. 7(Issue 82) pp:51965-51969
Publication Date(Web):2017/11/07
DOI:10.1039/C7RA09870G
C-myc promoter G-quadruplex is a very important target for developing anti-cancer drugs. However, highly selective recognition of DNA c-myc G-quadruplex with parallel configuration is also a very challenging problem. Here, we showed a new type of N-containing alkaloid, 3,8a-disubstituted indolizinone, which adopted a distorted configuration. 6-Methyl-3-(naphthalen-2-yl)-8a-(4-methylpyridin-2-yl)-indolizinone could selectively recognize DNA c-myc G-quadruplex leading to an obvious fluorescence enhancement by 11-fold, and meanwhile the G-quadruplex can be stabilized up to 90 °C. Further, it could down-regulate the transcription of oncogene c-myc in both human non-small cell line (A549) and human laryngeal epithelial cell line (Hep-2).
Co-reporter:Xiufeng Zhang;Ling Lan;Shu Yang;Yulan Rui;Qian Li;Hongbo Chen;Xin Sun;Qianfan Yang
RSC Advances (2011-Present) 2017 vol. 7(Issue 71) pp:44904-44907
Publication Date(Web):2017/09/15
DOI:10.1039/C7RA04272H
A new method to recognize human transferrin (Tf) conformations was developed using a cyanine dye supramolecular assembly. We achieved detection of the open conformation of Tf (apo-Tf) in a sub-micromolar level against the closed one (holo-Tf). As a protein conformational probe, it's promising to monitor the transition between the two conformations of Tf.
Co-reporter:Xin Sun;Qian Li;Junfeng Xiang;Lixia Wang;Xiufeng Zhang;Ling Lan;Shujuan Xu;Fengmin Yang
Analyst (1876-Present) 2017 vol. 142(Issue 18) pp:3352-3355
Publication Date(Web):2017/09/08
DOI:10.1039/C7AN01062A
A fluorescent cationic benzothiazole dye that selectively targets a G-quadruplex aptamer was designed and synthesized as a K+ sensor. The K+-driven aptamer sensor is based on the strategy of conformational transition from single-stranded DNA to G-quadruplex structure, leading to an amplified fluorescence signal in the reporter. This fluorescent sensor displayed high selectivity for K+, suggesting great potential for practical applications.
Co-reporter:Yunhua Shi, Hongxia Sun, Junfeng Xiang, Hongbo Chen, Suge Zhang, Aijiao Guan, Qian Li, Shujuan Xu and Yalin Tang
Chemical Communications 2016 vol. 52(Issue 45) pp:7302-7305
Publication Date(Web):09 May 2016
DOI:10.1039/C6CC02930B
Multiple cycle regulation of the supramolecular chirality of a cyanine dye has been successfully achieved by using DNA G-quadruplexes as templates, which is easily controllable by repeated addition of Ag+ and cysteine (Cys). This work provides an easy and controllable strategy for the chiral regulation of supramolecules.
Co-reporter:Hongxia Sun, Hongbo Chen, Xiufeng Zhang, Yan Liu, Aijiao Guan, Qian Li, Qianfan Yang, Yunhua Shi, Shujuan Xu, Yalin Tang
Analytica Chimica Acta 2016 Volume 912() pp:133-138
Publication Date(Web):17 March 2016
DOI:10.1016/j.aca.2016.01.041
•A new insight for developing Na+ detection technology is provided.•The mechanism relies on G-quadruplex conformation-related DNAzyme activity.•The Na+ sensor can effectively avoid the interference of K+.•Detection of the Na+ level in serum is proved.There has been a big challenge in developing the Na+ sensor that can be practically used in the physiological system with the interference of large amounts of K+. In this research, a novel Na+ sensor has been designed based on the G-quadruplex-conformation related DNAzyme activity. The sensor exhibits high selectivity and sensitivity with the detection limit of 0.6 μM, which enables the sensor to be practically used in determination of the Na+ level in serum. The research not only provides a simple Na+ sensor but also opens a new way for developing the detection technology of Na+.
Co-reporter:Hongbo Chen, Hongxia Sun, Xiufeng Zhang, Xiaoran Sun, Yunhua Shi, Shujuan Xu and Yalin Tang
New Journal of Chemistry 2016 vol. 40(Issue 3) pp:1940-1943
Publication Date(Web):06 Jan 2016
DOI:10.1039/C5NJ02652K
A colorimetric and fluorometric dual-modal DNA logic gate has been constructed, which is based on the response of a cyanine dye supramolecule to K+–Pb2+-switched G-quadruplexes. Only when the input is K+, the output is 1, which made the system an INHIBIT logic gate. The gate operation constructed here is label-free, and is of simple design and low-cost, showing great promise for practical onsite applications.
Co-reporter:Ai-Jiao Guan, Meng-Jie Shen, En-Xuan Zhang, Qian Li, Li-Xia Wang, Li-Jin Xu, Jun-Feng Xiang, Ya-Lin Tang
Bioorganic & Medicinal Chemistry Letters 2016 Volume 26(Issue 2) pp:609-612
Publication Date(Web):15 January 2016
DOI:10.1016/j.bmcl.2015.11.062
It is found that G-quadruplexes have important functions in biological systems, such as gene expression. Molecules which can stabilize the G-quadruplex structure may have potential application in regulating the expression of gene. A series of methylazacalix[n]pyridine (n = 4, 6, 7, 8, 9) has been tested to stabilize the intermolecular human telomeric G-quadruplex (T12 and H12), intramolecular TBA, c-kit and bcl-2 G-quadruplex by CD denaturation experiments. The results showed that only methylazacalix[6]pyridine (MACP6) can stabilize the intermolecular G-quadruplex formed from the 12 bp human telomere. Further studies evidenced that the shape-complementary binding mode was what contributed to the interaction between MACP6 and T12 G-quadruplex.Different with MACPn (n = 4, 7, 8, 9), MACP6 can selectively stabilize the 12 bp intermolecular G-quadruplex by shape-complementary mode. MACP6 also can discriminate the parallel and antiparallel forms of T12 G-quadruplex.
Co-reporter:Yun Feng, Dazhang Yang, Hongbo Chen, Wenli Cheng, Lixia Wang, Hongxia Sun, Yalin Tang
Bioorganic & Medicinal Chemistry Letters 2016 Volume 26(Issue 7) pp:1660-1663
Publication Date(Web):1 April 2016
DOI:10.1016/j.bmcl.2016.02.065
The G-quadruplexes located in the P1 promoter of B-cell lymphoma-2 (Bcl-2) gene are implicated to regulate Bcl-2 expression. Here, we designed a new pyridostatin analog named PDF, which exhibited high specificity and stabilizing effect toward G-quadruplexes. The luciferase assay demonstrated that PDF could significantly suppress Bcl-2 transcriptional activation in human laryngeal squamous carcinoma cells (Hep-2) cells. Besides, PDF also induced cell apoptosis in vitro assays. These results provide an excellent G-quadruplex specific ligand as an efficient Bcl-2 inhibitor. These results also implicate that PDF may be a potential anticancer drug to head neck cancer.
Co-reporter:Xiu-feng Zhang;Ling Lan;Lei Chen;Hong-bo Chen;Qian-fan Yang;Qian Li;Qi-long Li;Xiao-ran Sun;Ya-lin Tang
Journal of Physical Organic Chemistry 2016 Volume 29( Issue 3) pp:127-133
Publication Date(Web):
DOI:10.1002/poc.3508
Abstract
Transferrin (Tf) can control the level of free iron as iron-binding blood plasma glycoprotein in biological fluids. Tf has been exploited in the recent years on account of the potential function as a drug carrier targeting to tumor cells. Cyanine dyes have been widely studied as photosensitizers. The binding mechanism of Tf with 3, 3′-di(3-sulfopropyl)-4, 5, 4′, 5′-dibenzo-9-ethyl-thiacarbocyanine triethylammonium salt (ETC) was characterized at varying pHs and temperatures by fluorescence, UV-Vis absorption, circular dichroism (CD), and molecular modeling methods. The results showed that the static fluorescence quenching occurred between Tf and ETC. It was found that ETC bound strongly with Tf with an intrinsic binding constant (Ka), in the order of 107 m−1. The thermodynamic parameters demonstrated that van der Waals force or hydrogen bonds were the major binding force. The binding of ETC-Tf caused the secondary conformational change of Tf with increasing the α-helix content in Tf, which was confirmed by the results of spectroscopic experiments. Molecular modeling revealed that ETC bound residues located in the N-lobe of Tf by van der Waals force and induced local structural changes of Tf. This study may provide the theoretical foundations for ETC as a probe to label Tf, which is further beneficial to the Tf-targeted drugs in vivo. Copyright © 2015 John Wiley & Sons, Ltd.
Co-reporter:Yingchun Gu;Dayong Lin;Ran Li;Xuening Fei;Jianguo Zhou
Luminescence 2016 Volume 31( Issue 2) pp:380-387
Publication Date(Web):
DOI:10.1002/bio.2970
Abstract
Carbazole and its derivatives have been widely utilized as a functional building block in the fabrication of the organic medicine, pesticides, materials, etc., because of their excellent solubility, stability and biological activity. In this paper, 1-(5-carboxypentyl)-4-(2-(N-ethyl-carbazole-3-yl) vinyl) pyridinium bromide with a large Stokes shift was synthesized and characterized by 1H NMR and MS. The UV/vis absorption and fluorescence spectra in different solvents and at different pH values were investigated preliminarily. The photostability and thermostability were also studied and the results showed that the compound was stable. The compound was also used to label bovine serum albumin (BSA) and calf thymus (ct)DNA. The results showed that the fluorescence intensity is enhanced when labeling with BSA and the binding ability is stronger than ctDNA, making it may be used as a biological probe. Copyright © 2015 John Wiley & Sons, Ltd.
Co-reporter:Li-Xia Wang;Jun-Feng Xiang ;Ya-Lin Tang
Advanced Synthesis & Catalysis 2015 Volume 357( Issue 1) pp:13-20
Publication Date(Web):
DOI:10.1002/adsc.201400818
Co-reporter:Yunhua Shi, Hongxia Sun, Junfeng Xiang, Lijia Yu, Qianfan Yang, Qian Li, Aijiao Guan, Yalin Tang
Analytica Chimica Acta 2015 Volume 857() pp:79-84
Publication Date(Web):1 February 2015
DOI:10.1016/j.aca.2014.12.002
•Ag+ shows a high specificity for inducing i-motif formation.•A cyanine dye was designed to recognize i-motif formation.•A novel Ag+ sensor is designed.•The sensor shows excellent performance in specificity, sensitivity, and real time response.•Detection of the Ag+ level in freshwater system is proved.A novel Ag+ sensor has been designed based on the mechanism that i-motif formation induced by Ag+ was sensitively recognized by a cyanine dye. The sensor exhibited an over 130–16,000 fold selectivity toward Ag+ than that toward other metal ions. This research not only provides a step forward toward the development of Ag+ detection but also represents a new application for i-motif DNA.The scheme for sensing Ag+ based on DMSB recognizing motif formation and the molecular structure of DMSB.
Co-reporter:Hongbo Chen, Xiufeng Zhang, Hongxia Sun, Xiaoran Sun, Yunhua Shi, Shujuan Xu and Yalin Tang
Analyst 2015 vol. 140(Issue 21) pp:7170-7174
Publication Date(Web):28 Aug 2015
DOI:10.1039/C5AN01507C
A supramolecular probe for visual detection of mercury (Hg) has been designed by using a cyanine dye and AS1411 G-quadruplexes, which exhibits an obvious color change from red to blue in response to an increased level of Hg2+. The supramolecular probe exhibits high selectivity and sensitivity towards Hg2+ and is promising for the detection of environmental samples with the naked eye.
Co-reporter:Dayong Lin, Xuening Fei, Yingchun Gu, Cuihong Wang, Yalin Tang, Ran Li and Jianguo Zhou
Analyst 2015 vol. 140(Issue 16) pp:5772-5780
Publication Date(Web):29 Jun 2015
DOI:10.1039/C5AN00866B
Many organic ligands were synthesized to recognize G-quadruplexes. However, different kinds of G-quadruplexes (G4s) possess different structures and functions. Therefore, selective recognition of certain types of G4s is important for the study of G4s. In this paper, a novel cyanine dye, 3-(2-(4-vinylpyridine))-6-(2-((1-(4-sulfobutyl))-3,3-dimethyl-2-vinylbenz[e]indole)-9-ethyl-carbazole (9E PBIC), composed of benzindole and carbazole was designed and synthesised. The studies on UV-vis and fluorescence properties of the dye with different DNA forms showed that the dye exhibits almost no fluorescence under aqueous buffer conditions, but it increased over 100 fold in the presence of c-myc G4 and 10–30 fold in the presence of other G4s, while little in the presence of single/double-stranded DNA, indicating that it has excellent selectivity to c-myc 2345 G4. For the binding studies the dye is interacted with the c-myc 2345 G-quadruplex by using the end-stack binding model. It can be said that the dye is an excellent targeting fluorescent probe for c-myc G-quadruplexes.
Co-reporter:Hongbo Chen, Hongxia Sun, Xiufeng Zhang, Xiaoran Sun, Yunhua Shi and Yalin Tang
RSC Advances 2015 vol. 5(Issue 3) pp:1730-1734
Publication Date(Web):28 Nov 2014
DOI:10.1039/C4RA11395K
A colorimetric probe of Pb2+ has been designed based on the mechanism that a supramolecular probe selectively recognized the Pb2+-induced conformational transition of G-quadruplexes. The probe exhibited high sensitivity and selectivity towards Pb2+, which enabled it to be practically used in detection of the Pb2+ level in a freshwater system.
Co-reporter:Qian Li;Junfeng Xiang
Chinese Journal of Chemistry 2015 Volume 33( Issue 9) pp:1041-1048
Publication Date(Web):
DOI:10.1002/cjoc.201400841
Abstract
Compounds selectively binding and stabilizing G-quadruplex structures could inhibit the telomerase or down- regulate the oncogenes and may act as anti-cancer drugs. An alkaloid with non-flat structure, fangchinoline, showed to strongly stabilize the intermolecular and intramolecular parallel stranded G-quadruplex structure, increasing melting temperature by 20 and 23°C, respectively. The binding mode was investigated by using NMR and molecular modelling methods. Four human cell lines (HL-60, BGC-823, Bel-7402 and KB) were taken to test the anti-proliferation effects of fangchinoline and the IC50 values were ranged from 16 to 32 µmol/L. These results showed that the fangchinoline or related moiety derivatives may represent a class of telomere-targeted agents as potential anti-cancer drugs.
Co-reporter:Lijia Yu, Qianfan Yang, Junfeng Xiang and Yalin Tang
Analytical Methods 2015 vol. 7(Issue 13) pp:5483-5489
Publication Date(Web):15 May 2015
DOI:10.1039/C5AY01025J
A series of dimeric cyanine dyes with different sizes of heterocyclic aromatic substituents and the same linker were synthesized, and these dyes were demonstrated to be highly selective compounds for binding to G-quadruplex DNA. These results showed that the size of heterocyclic aromatic substituents had great influence on the self-assembly properties of these dyes as well as their interaction with G-quadruplex motifs. A dye with a large aromatic substituent (AB-P4) formed strong aggregates and also presented significant selectivity for the G-quadruplex over duplex DNA. In contrast, dyes with small aromatic rings (B-P4 and TC-P4) had a much smaller effect on the recognition of the G-quadruplex, suggesting that the possession of a suitably sized plane for good π–π stacking with the G-quadruplex was essential for the interaction of dyes with the G-quadruplex. Moreover, the loop structures of the G-quadruplex also affected the binding mode of AB-P4 with the G-quadruplex: loops located at the side of the tetrad were favorable for both end-stacking binding modes in the form of monomers, while more hindrance by the loop at one end of the tetrads resulted in one end-stacking on the G-quadruplex in the form of dimers. In comparison, loops play weak roles in dyes with TC-P4, and this dye could stack on both ends of tetrads.
Co-reporter:Ben-Quan Hu, Li-Xia Wang, Jun-Feng Xiang, Luo Yang, Ya-Lin Tang
Chinese Chemical Letters 2015 Volume 26(Issue 3) pp:369-372
Publication Date(Web):March 2015
DOI:10.1016/j.cclet.2014.12.006
A novel method for achieving a copper(II)-catalyzed domino reaction for the construction of 2-aryl quinazolinones, without the addition of any ligand and additive, has been developed. The domino reaction achieved N-(α-substituted)benzylation, benzylic CH amidation, and CC (or CH) bond cleavage.A novel method for achieving a copper(II)-catalyzed domino reaction for the construction of 2-aryl quinazolinones, without the addition of any ligand and additive, has been developed. The domino reaction achieved N-(α-substituted)benzylation, benzylic CH amidation, and carbon–carbon (or carbon–hydrogen) bond cleavage.
Co-reporter:Li-Jia Yu, Wei Gai, Qian-Fan Yang, Jun-Feng Xiang, Hong-Xia Sun, Qian Li, Li-Xia Wang, Ai-Jiao Guan, Ya-Lin Tang
Chinese Chemical Letters 2015 Volume 26(Issue 6) pp:705-708
Publication Date(Web):June 2015
DOI:10.1016/j.cclet.2015.02.002
G-quadruplexes (G4s) play important roles in biological systems, such as telomere maintenance, replication, and transcription. Based on the DNA sequence, loop geometry, and the local environments, G4s can be classified into different conformations. It is important to detect different types of G4s to monitor the diseases related with G4s. Most ligands bind to G4s based on end-stacking modes, while rare ligands bind to G4s through groove binding modes. We have found that a cyanine dye DMSB interacts with parallel G4 by end-stacking and groove simultaneous binding mode. In this article, we found that DMSB could simply discriminate parallel G4s from other DNA motifs by using UV–vis spectrum. These results give some clues to develop high specificity G4 probes.In this paper, we constructed a simple UV–vis method to discriminate parallel-stranded G-quadruplexes from other DNAs motifs based on dual-site binding mode of DMSB.
Co-reporter:Xiu-feng Zhang, Lei Chen, Qian-fan Yang, Qian Li, Xiao-ran Sun, Hong-bo Chen, Guang Yang, Ya-lin Tang
Colloids and Surfaces A: Physicochemical and Engineering Aspects 2015 Volume 469() pp:187-193
Publication Date(Web):20 March 2015
DOI:10.1016/j.colsurfa.2015.01.023
•MTC binds strongly to Tf with the binding constant Ka, in the order of 109 M−1.•The fluorescence quenching of Tf by MTC was a static quenching process.•MTC binds to Tf via hydrogen bonds and van der Waals forces.•SFS and CD spectral studies of MTC–Tf revealed structural changes in protein.•Docking study proved that the binding site of MTC to Tf is located in the N-lobe.The study of binding mechanisms and any associated conformational changes of human serum transferrin (Tf) on interaction with cyanine dye 3,3′-di(3-sulfopropyl)-4,5,4′,5′-dibenzo-9-methyl-thiacarbocyanine triethylam-monium salt (MTC) are of great importance in the process of Tf targeting dye delivery into cancer cells. It is possible to lay theoretical foundations for cyanine dye as a potential photosensitizer to achieve the photodynamic therapy (PDT). The mechanisms of interaction between MTC and Tf were portrayed by means of fluorescence spectra, UV–vis absorption spectra, synchronous fluorescence spectra, circular dichroism (CD) and molecular dynamic docking. The data of fluorescence spectra displayed that the formation of MTC–Tf complex is a static quenching process through van der Waals forces and hydrogen bonds with a high affinity of 109 M−1. Binding distance between MTC and Tf substantiated that the non-radioactive energy transfer mechanism is also involved in the fluorescence quenching of protein. Furthermore, structural analysis indicated that MTC binding result in an increased of α-helix content and an increased hydrophobic around the tryptophan residues of Tf as well as a certain structural changes in Tf, which confirmed by the CD, synchronous fluorescence and UV–vis experiments. Additionally, the results of molecular dynamic docking elucidated that the dye was located in N-lobe of Tf.
Co-reporter:Hongxia Sun, Lijia Yu, Hongbo Chen, Junfeng Xiang, Xiufeng Zhang, Yunhua Shi, Qianfan Yang, Aijiao Guan, Qian Li, Yalin Tang
Talanta 2015 Volume 136() pp:210-214
Publication Date(Web):1 May 2015
DOI:10.1016/j.talanta.2015.01.027
•A probe is designed for colorimetric detection of Pb2+.•A clip-like cyanine dye is synthesized.•The dye can recognize Pb2+-induced G-quadruplex transition.•The probe shows a high specificity and sensitivity.•Detection of the Pb2+ in freshwater system is applied.A probe for colorimetric detecting lead ion (Pb2+) has been designed by using a newly synthesized clip-like cyanine dye and G-quadruplex. The unique structure of the clip-like cyanine dye endowed the probe with a high selectivity towards Pb2+. Significant changes in absorption spectra of the cyanine dye recognizing the Pb2+-induced conformational transition of G-quadruplexes made the probe show a high sensitivity towards Pb2+ with a detection limit of 1 nM. The excellent performance enabled the probe to be practically applied in measuring the Pb2+ pollution in freshwater system.
Co-reporter:Li-Xia Wang, Qian Shang, Qian Li, Jun-Feng Xiang, Yan Liu, Ai-Jiao Guan, Hong-Xia Sun, Li-Jia Yu, Ya-Lin Tang
Tetrahedron 2015 Volume 71(Issue 30) pp:4982-4986
Publication Date(Web):29 July 2015
DOI:10.1016/j.tet.2015.05.081
G-quadruplex as a therapeutic target to develop novel anti-cancer agents has attracted a growing interest. Among all the ligands of G-quadruplexes, pyridostatin derivatives play a very important role. Here, we first reported the recognition of the fundamental skeleton pyridostatin I, which was simply synthesized. Compared to pyridostatin II comprising terminal amino groups, pyridostatin I selectively stabilized intramolecular anti-parallel telomeric G-quadruplex by raising the melting temperature about 20 °C at 295 nm of H22, while pyridostatin II preferred to stabilize intermolecular parallel telomeric G-quadruplex by raising the melting temperature about 25 °C at 265 nm of H7, maybe due to the suited size measurements between G-quadruplex hosts and pyridostatin guests. MTT assays indicated that pyridostatin II had better cytotoxic effects against HCT-8 and A549 cell lines obviously, indicating positively charged side chains may be required for improving the water solubility and cellular uptake of the apolar central skeleton.
Co-reporter:Xiu-feng Zhang;Lei Chen;Qian-fan Yang;Qian Li;Xiao-ran Sun;Hong-bo Chen;Guang Yang;Ya-lin Tang
Luminescence 2015 Volume 30( Issue 8) pp:1176-1183
Publication Date(Web):
DOI:10.1002/bio.2873
Abstract
Complexation between the primary carrier of ligands in blood plasma, human serum transferrin (Tf), and a cyanine dye, 3,3′-di(3-sulfopropyl)-4,5,4′,5′-dibenzo-9-phenyl-thiacarbocyanine-triethylam monium salt (PTC) was investigated using fluorescence spectra, UV/Vis absorption spectra, synchronous fluorescence spectra, circular dichroism (CD) and molecular dynamic docking. The experimental results demonstrate that the formation of PTC–Tf complex is stabilized by van der Waal's interactions and hydrogen bonds, and the binding constants were found to be 8.55 × 106, 8.19 × 106 and 1.75 × 104 M−1. Moreover, fluorescence experiments prove that the operational mechanism for the fluorescence quenching is static quenching and non-radiative energy transfer. Structural investigation of the PTC–Tf complexes via synchronous fluorescence spectra and CD showed that the structure of Tf became more stable with a major increase in the α-helix content and increased polarity around the tryptophan residues after PTC binding. In addition, molecular modeling highlights the residues located in the N-lobe, which retain high affinity for PTC. The mode of action of the PTC–Tf complex is illustrated by these results, and may provide an effective pathway for the transport and targeted delivery of antitumor agents. Copyright © 2015 John Wiley & Sons, Ltd.
Co-reporter:Yunhua Shi, Hongxia Sun, Junfeng Xiang, Hongbo Chen, Qianfan Yang, Aijiao Guan, Qian Li, Lijia Yu and Yalin Tang
Chemical Communications 2014 vol. 50(Issue 97) pp:15385-15388
Publication Date(Web):21 Oct 2014
DOI:10.1039/C4CC06980C
A simple technology to construct diverse DNA logic gates (OR and INHIBIT) has been designed utilizing a H+ and/or Ag+ induced i-motif structure. The logic gates are easily controlled and also show a real time response towards inputs. The research provides a new insight for designing DNA logic gates using an i-motif DNA structure.
Co-reporter:Hongxia Sun, Junfeng Xiang, Xiufeng Zhang, Hongbo Chen, Qianfan Yang, Qian Li, Aijiao Guan, Qian Shang, Yalin Tang and Guangzhi Xu
Analyst 2014 vol. 139(Issue 3) pp:581-584
Publication Date(Web):18 Nov 2013
DOI:10.1039/C3AN01929B
A colorimetric and fluorometric dual-modal supramolecular chemosensor has been fabricated by using the H- and J-aggregates of a cyanine dye, which has been successfully applied to detect human serum albumin (HSA) in urine with high specificity.
Co-reporter:Li-Xia Wang;Jun-Feng Xiang ;Ya-Lin Tang
European Journal of Organic Chemistry 2014 Volume 2014( Issue 13) pp:2682-2685
Publication Date(Web):
DOI:10.1002/ejoc.201400108
Abstract
A copper-catalyzed approach for the synthesis of 2-aryl-quinazolinones through a domino reaction involving C–C bond cleavage is described. This protocol involves intramolecular C–C bond cleavage to construct 2-aryl-quinazolinones, which may offer an alternative method to prepare medically important quinazolinone derivatives and a new strategy for C–C bond cleavage. Besides C–C bond cleavage, this domino reaction includes N-arylation and benzylic C–H amidation.
Co-reporter:Li-Xia Wang, Ben-Quan Hu, Jun-Feng Xiang, Jie Cui, Xiang Hao, Tong-Ling Liang, Ya-Lin Tang
Tetrahedron 2014 70(45) pp: 8588-8591
Publication Date(Web):
DOI:10.1016/j.tet.2014.09.057
Co-reporter:Hongxia Sun, Junfeng Xiang, Wei Gai, Yan Liu, Aijiao Guan, Qianfan Yang, Qian Li, Qian Shang, Hui Su, Yalin Tang and Guangzhi Xu
Chemical Communications 2013 vol. 49(Issue 40) pp:4510-4512
Publication Date(Web):26 Mar 2013
DOI:10.1039/C3CC39020A
A G-quadruplex is identified which can exhibit two different motifs, respectively, corresponding to Na+ and K+. The relative amount of each motif is related to the Na+/K+ ratio. Based on selective recognition of the G-quadruplex motifs by a cyanine dye aggregate, a method for both colorimetric and quantitative measurements of Na+/K+ ratios is constructed.
Co-reporter:Wei Gai, Qianfan Yang, Junfeng Xiang, Lijia Yu, Aijiao Guan, Qian Li, Hongxia Sun, Qian Shang, Wei Jiang, Hong Zhang, Yan Liu, Lixia Wang and Yalin Tang
Physical Chemistry Chemical Physics 2013 vol. 15(Issue 16) pp:5758-5761
Publication Date(Web):04 Mar 2013
DOI:10.1039/C3CP44387F
Biomolecules are promising templates that play important roles in controlling the supramolecular assembly process more flexibly and precisely due to their unique characteristic structures. Here we first present a G-quadruplex with a chair-like antiparallel motif as a novel dual-functional regulation template in the aggregation of a cyanine dye.
Co-reporter:Wei Gai, Qianfan Yang, Junfeng Xiang, Wei Jiang, Qian Li, Hongxia Sun, Lijia Yu, Qian Shang, Aijiao Guan, Hong Zhang and Yalin Tang
Analyst 2013 vol. 138(Issue 3) pp:798-804
Publication Date(Web):21 Nov 2012
DOI:10.1039/C2AN36557J
Specific and sensitive identification of special G-quadruplex structures is an important issue and attracts increasing interest. In this paper, a novel, signal-amplified strategy is proposed for the specific detection of G-quadruplexes, which is very different from those currently-dominating methods based on single-molecular fluorescent probes. In this strategy, a ‘special designed’ cyanine dye loses the ability of self-assembly in solution but still keeps its assembly potential. When the G-quadruplex with a specific structure is present, the assembly potential of the dye is reactivated so that it can assemble to J-aggregates. Other DNA motifs without this specific structure cannot activate its assembly potential no matter if they are double-stranded or quadruplex DNA. Since the assembly is quite specific to structure, the induced procedure of the aggregates provides high specificity for this strategy. In addition, the attached aggregates exponentially amplify the signal due to the signal stacking of those monomers within the aggregates, which then significantly enhances the sensitivity of this strategy. As a result, this strategy exhibits a highly specific and sensitive detection ability for specific G-quadruplex structures both between quadruplexes and non-quadruplexes and among diverse quadruplex motifs.
Co-reporter:Wei Gai;QianFan Yang;JunFeng Xiang;HongXia Sun;Qian Shang
Science Bulletin 2013 Volume 58( Issue 7) pp:731-740
Publication Date(Web):2013 March
DOI:10.1007/s11434-012-5639-4
G-quadruplexes attract more and more attention in recent years. Numerous small molecules which can induce or stabilize the formation of G-quadruplexes have been investigated on the purpose of anticancer drug development. As a motif existed in physiological condition, flanking sequences are an important part of G-quadruplexes but the study on the impact of flanking sequences on (G-quadruplex)-ligand binding is rarely reported. In this paper, the effects of flanking sequences on binding affinity between a series of unimolecular parallel-stranded G-quadruplex sequences derived from c-myc oncogene promoter (termed as c-myc G-quadruplexes) and their ligands are discussed in detail. The results showed that the flanking sequences on c-myc G-quadruplexes play key roles in (G-quadruplex)-ligand interaction. When a c-myc G-quadruplex is bound to its ligands, the flanking sequences might form a binding cavity above the terminal G-quartet, which could provide a suitable site for ligands to dock in. Moreover, the bases on flanking sequences could interact with ligand through π-π stacking, and finally form a sandwich-stacking mode (terminal G-quartet, ligand and bases on the flanking sequence). This mode could stabilize the (G-quadruplex)-ligand complex effectively and enhance the binding affinity dramatically. However, flanking sequences are also found to exhibit steric hindrance effect which could impede the (G-quadruplex)-ligand binding.
Co-reporter:Xiu-feng Zhang, Rui-min Han, Xiao-ran Sun, Guang-yue Li, Qian-fan Yang, Qian Li, Wei Gai, Miao Zhang, Lei Chen, Guang Yang, Ya-lin Tang
Bioorganic & Medicinal Chemistry Letters 2013 23(24) pp: 6677-6681
Publication Date(Web):
DOI:10.1016/j.bmcl.2013.10.042
Co-reporter:Xue-li Cao, Jing Xu, Ge Bai, Hong Zhang, Yan Liu, Jun-feng Xiang, Ya-lin Tang
Journal of Chromatography B 2013 Volume 929() pp:6-10
Publication Date(Web):15 June 2013
DOI:10.1016/j.jchromb.2013.04.006
•The potent anti-tumor components in Z. ailanthoides were investigated.•The silica gel chromatography and HPCCC were used successively.•Luvangetin, xanthyletin, hinokinin and asarinin were isolated and identified.•Asarinin was firstly isolated from this plant to the best of our knowledge.Silica gel column chromatography combined with high performance counter-current chromatography (HPCCC) was employed for the separation of potential anti-tumor compounds from a petroleum ether fraction of a crude extract of Zanthoxylum ailanthoides Sieb. & Zucc. This traditional Chinese medicine was recently found to display high inhibitory activity against A-549 human cancer cells in vitro and Lewis lung cancer in vivo. A 75% aqueous ethanol extract of the stem bark of Z. ailanthoides was fractionated with petroleum ether, ethyl acetate and n-butanol. In this paper, the petroleum ether fraction was pre-separated by silica gel column chromatography with a petroleum ether–ethyl acetate gradient. Two fractions were further separated and purified by HPCCC using n-hexane–ethyl acetate–methanol–water (3:1:2:1, v/v) and petroleum–ethyl acetate–methanol–water (8:6:7:7, v/v). Finally, coumarins and lignans including luvangetin, xanthyletin, hinokinin and asarinin were isolated and identified by MS, 1H and 13C NMR. In total, 56 mg of xanthyletin (1), 140 mg of hinokinin (2), 850 mg of luvangetin (3) and 74 mg of asarinin (4) were obtained from approximately 50 g of petroleum ether extract, in 96.0%, 94.0%, 99.0% and 94.0% purity, respectively, as determined by HPLC. The separation method proved to be efficient, especially for those minor components.
Co-reporter:Hongxia Sun, Junfeng Xiang, Qian Li, Yan Liu, Lin Li, Qian Shang, Guangzhi Xu and Yalin Tang
Analyst 2012 vol. 137(Issue 4) pp:862-867
Publication Date(Web):05 Jan 2012
DOI:10.1039/C2AN15870A
Recognition of different human telomeric G-quadruplex structures has been a very important task for developing anti-cancer drug design. However, it also is a very challenging question since multiple conformational isomers of telomeric G-quadruplexes coexist under some conditions. Here, three different conformations including parallel, antiparallel, and mixed-type telomeric G-quadruplex structures have been well recognized by quinacrine (QNA) through monitoring its absorption, fluorescence, and fluorescence lifetime spectra. The multiple structures of H22 G-quadruplexes under physiological K+ conditions could also be easily determined to coexist as mixed-type and antiparallel G-quadruplexes. The recognition mechanism based on the different binding affinity and binding sites has been further elucidated by association with the nuclear magnetic resonance (NMR) results.
Co-reporter:Hongxia Sun, Junfeng Xiang, Wei Gai, Qian Shang, Qian Li, Aijiao Guan, Qianfan Yang, Yan Liu, Yalin Tang and Guangzhi Xu
Analyst 2012 vol. 137(Issue 24) pp:5713-5715
Publication Date(Web):09 Oct 2012
DOI:10.1039/C2AN35944H
A supramolecular probe is designed for visual detection of potassium based on a novel cyanine dye aggregate recognizing the motif transition of telomeric G-quadruplexes under the Na+ background. The practical application for colorimetric measurement of urine potassium has been tested.
Co-reporter:Lin Li, Sheng Hai Chang, Jun Feng Xiang, Qian Li, Huan Huan Liang, Ya Lin Tang, Ying Fang Liu
Chinese Chemical Letters 2012 Volume 23(Issue 1) pp:89-92
Publication Date(Web):January 2012
DOI:10.1016/j.cclet.2011.09.006
PAC subunit from avian influenza (H5N1) viral RNA polymerase was used in this work as a target in the screening for anti-influenza agents from licorice-derived compounds. As a result, 18β-glycyrrhetinic acid was suggested to be PAC ligand by flexible docking, and was then confirmed by relaxation-edited NMR. The result of ApG primer extension assay indicated that this PAC ligand can inhibit the polymerase activity, and thus may potentially be valuable as anti-influenza lead compound. This work validated the possibility of screening polymerase inhibitors by using PAC as a target, and provided a starting point for the further discovery of new anti-influenza drugs.
Co-reporter:Ai-Jiao Guan, En-Xuan Zhang, Jun-Feng Xiang, Qian-Fan Yang, Qian Li, Hong-Xia Sun, De-Xian Wang, Qi-Yu Zheng, Guang-Zhi Xu, and Ya-Lin Tang
The Journal of Physical Chemistry Letters 2012 Volume 3(Issue 1) pp:131-135
Publication Date(Web):December 19, 2011
DOI:10.1021/jz201539s
Calixaromatics have attracted much attention on molecular recognition owing to their flexible conformations, cavity structures, versatile recognition properties, and functions. However, conformational control of calixaromatics is still a challenging topic in the field of calixaromatics. Therefore, we explore the possibility to control the chirality of achiral calixaromatics, methylazacalix[6]pyridine (abbreviated as MACP6), by templating of DNA. We have found that MACP6 with opposite chirality can be achieved by controlling the secondary structure of bcl-2 2345 DNA. Furthermore, MACP6 with different chirality has been used to recognize fullerene derivatives in aqueous solution. Our results have provided a possible approach to construct chiral calixaromatics.Keywords: calixaromatics; chirality; conformational regulation; G-quadruplex;
Co-reporter:Qian Shang, Jun-Feng Xiang, Ya-Lin Tang
Talanta 2012 Volume 97() pp:362-367
Publication Date(Web):15 August 2012
DOI:10.1016/j.talanta.2012.04.046
Inhibition of the α-glucosidase activity is a therapeutic approach for diabetes. In this study, an effective strategy for screening α-glucosidase inhibitors based on Nuclear magnetic resonance (NMR) techniques was developed to screen and identify α-glucosidase inhibitors from Mulberry leaf extract. As a result, deoxynojirimycin, as a potential α-glucosidase inhibitor, was found. The study suggested that our strategy was a powerful tool for screening and identification of α-glucosidase inhibitors in complex samples. Furthermore the interaction between α-glucosidase and its inhibitor was studied by NMR.Highlights► Our strategy can screen the inhibitors of α-glucosidase in mixtures. ► As long as the resonance(s) of ligand(s) can be detected by NMR, the ligand(s) could be identified. ► The process is time saving and labor saving. ► Our strategy can discover minor active components which may be lost in separation process.
Co-reporter:Ge Bai, Xueli Cao, Hong Zhang, Junfeng Xiang, Hong Ren, Li Tan, Yalin Tang
Journal of Chromatography A 2011 Volume 1218(Issue 37) pp:6433-6438
Publication Date(Web):16 September 2011
DOI:10.1016/j.chroma.2011.07.028
G-quadruplex DNA structure is considered to be a very attractive target for antitumor drug design due to its unique role in maintaining telomerase activities. Therefore, discovering ligands with high stability of G-quadruplex structure is of great interest. In this paper, high-performance liquid chromatography (HPLC) was used for fast screening of G-quadruplex ligands from the crude extract of Kalopanax septemlobus (Thunb.) Koidz, a traditional Chinese medicine. Four potent G-quadruplex ligands were firstly selected through HPLC by comparing the peak profiles and absorption intensity of the crude sample before and after interaction with G-quadruplex DNA. Then the target compounds were isolated and purified by high-speed countercurrent chromatography (HSCCC) for further confirmation of their stabilities of G-quadruplex by temperature-dependent circular dichroism (CD). Four compounds were isolated and identified as 2,4-dihydroxybenzoic acid (I), chlorogenic acid (II), caffeic acid (III) and 5-feruloylquinic acid (IV) each by MS and NMR. Finally, compound I, II, III were each proved to be potent G-quadruplex ligands by decreasing the peak intensity in HPLC chromatogram after complexation with G-quadruplex, which stabilize G-quadruplex by 7 ± 2 °C, 10 ± 2 °C, and 3 ± 2 °C respectively, based on CD analyses. However, compound IV showed no G-quadruplex stability. The decrease of peak absorption intensity in HPLC chromatogram is the most important signal to find G-quadruplex ligands. This provides a very promising strategy for fast screening G-quadruplex ligands from natural plant extracts.
Co-reporter:Shu Yang;JunFeng Xiang;QianFan Yang;QiuJu Zhou
Science Bulletin 2011 Volume 56( Issue 7) pp:613-617
Publication Date(Web):2011 March
DOI:10.1007/s11434-010-4257-2
Over the past few decades, numerous molecules have been discovered or designed to interact efficiently and selectively with a peculiar DNA structure named G-quadruplex. Some of these molecules have been developed as anticancer agents. To aid the design of anticancer agents, the ability of alkaloids possessing Protoberberine and Benzophenanthridine groups to induce the formation of G-quadruplexes were studied using CD spectroscopy. By careful examination of their structures, we found that a benzo[1,3]dioxole group plays an important role in influencing their inductive properties. The more functional groups the alkaloids have, the stronger their G-quadruplex inductive ability.
Co-reporter:Yanxia Zhang, Junfeng Xiang, Yan Liu, Xiufeng Zhang, Yalin Tang
Bioorganic & Medicinal Chemistry Letters 2011 21(19) pp: 5982-5986
Publication Date(Web):
DOI:10.1016/j.bmcl.2011.07.066
Co-reporter:Ai-Jiao Guan, En-Xuan Zhang, Jun-Feng Xiang, Qian Li, Qian-Fan Yang, Lin Li, Ya-Lin Tang, and Mei-Xiang Wang
The Journal of Physical Chemistry B 2011 Volume 115(Issue 43) pp:12584-12590
Publication Date(Web):September 16, 2011
DOI:10.1021/jp204154m
A novel trend in G-quadruplex ligand design is to build a binder that is able to not only discriminate G-quadruplex from duplex-DNA, but also among various G-quadruplex structures. Methylazacalix[6]pyridine (MACP6), a new type of azacalixarene with flexible conformation, exhibits induced circular dichroism signals when interacted with most of G-quadruplexes. The intensities of the induced signals are strongly dependent on the topology of G-quadruplexes. Further evidence has shown that these signals can be ascribed to the preferred binding of MACP6 to the loops of G-quadruplexes, which rely on the nature of nucleotides in the loops.
Co-reporter:Qianfan Yang, Jun-Feng Xiang, Shu Yang, Qian Li, Qiuju Zhou, Aijiao Guan, Lin Li, Yanxia Zhang, Xiufeng Zhang, Hong Zhang, Yalin Tang, and Guangzhi Xu
Analytical Chemistry 2010 Volume 82(Issue 22) pp:9135
Publication Date(Web):October 22, 2010
DOI:10.1021/ac1017716
The H-aggregates of a novel cyanine dye, 3,3′-di(3-sulfopropyl)-4,5,4′,5′-dibenzo-9-methyl-thiacarbocyanine triethylammonium salt (MTC), have been fabricated to verify hybrid/parallel intramolecular G-quadruplexes from linear duplex and single-strand DNAs under physiological conditions. The recognition is found to be successful both in solution and on Au film. These results have shown MTC H-aggregates, as a supramolecular system, may be used as a potential excellent probe for DNA structure, both in vitro and in vivo.
Co-reporter:Hong Zhang, Jun-feng Xiang, Hai-yu Hu, Lin Li, Xue Jin, Yan Liu, Peng-fei Li, Yalin Tang, and Chuan-feng Chen
Biochemistry 2010 Volume 49(Issue 49) pp:
Publication Date(Web):November 12, 2010
DOI:10.1021/bi1001773
A scissors-shaped binaphthyl derivative (NPA) has been found to stabilize the G-quadruplex by intertwisting the whole G-quadruplex with two long chains, through the cooperation of the two functional groups: binaphthylene and the ethoxy chain. Moreover, NPA exhibits a good inhibitory effect of telomerase activity as well as excellent cytotoxic activity against HepG-2 human liver cancer cells.
Co-reporter:Shu Yang;Junfeng Xiang;Qianfan Yang;Qian Li;Qiuju Zhou;Xiufeng Zhang ;Guangzhi Xu
Chinese Journal of Chemistry 2010 Volume 28( Issue 5) pp:771-780
Publication Date(Web):
DOI:10.1002/cjoc.201090145
Abstract
The ligands which can facilitate the formation and stabilize G-quadruplex structures have attracted enormous attention due to their potential ability of inhibiting the telomerase activity and halting tumor cell proliferation. It is noteworthy that the abilities of the quaternary benzophenanthridine alkaloids (QBAs), the very important G-quadruplex binders, in inducing the formation of human telomeric DNA G-quadruplex structures, have not been reported. Herein, the interaction between single-strand human telomeric DNA and three QBAs: Sanguinarine (San), Nitidine (Nit) and Chelerythrine (Che), has been investigated. Although these molecules are very similar in structure, they exhibit significantly different abilities in inducing oligonucleotide d(TTAGGG)4 (HT4) to specific G-quadruplex structures. Our experimental results indicated that the best ligand San could convert HT4 into antiparallel G-quadruplex structure completely, followed by Nit, which could transform to mixed-type or hybrid G-quadruplex structure partially, whereas Che could only transform to antiparallel G-quadruplex structure in small quantities. The relative QBAs' inducing abilities as indicated by the CD data are in the order of San>Nit>Che. Further investigation revealed that the G-quadruplex structures from HT4 induced by QBAs are of intramolecular motif. And only sequences with certain length could be induced by QBAs because of their positive charges which could not attract short chain DNA molecules to close to each other and form intermolecular G-quadruplex. In addition, the factors that affect the interaction between HT4 and QBAs were discussed. It is proposed that the thickness of the molecular frame and the steric hindrance are the primary reasons why the subtle differences in QBAs' structure lead to their remarkable differences in inducing the formation of the G-quadruplex structures.
Co-reporter:Qianfan Yang;Junfeng Xiang;Shu Yang;Qiuju Zhou;Qian Li;Aijiao Guan;Xiufeng Zhang;Hong Zhang;Guangzhi Xu
Chinese Journal of Chemistry 2010 Volume 28( Issue 7) pp:1126-1132
Publication Date(Web):
DOI:10.1002/cjoc.201090196
Abstract
Single-stranded telomeric DNA tends to form a four-base-paired planar structure termed G-quadruplex. Although kinds of G-quadruplex structures in vitro have been documented in the presence of potassium or sodium, recognition of these DNA motifs (both in vitro and in vivo) is still an important issue in understanding the biological function of the G-quadruplex structures in telomeres as well as developing anticancer agents. Herein we address this important question through the distinctive properties of a supramolecular system of cyanine dye 3,3′-di(3-sulfopropyl)-4,5,4′,5′-dibenzo-9-methyl-thiacarbocyanine triethylammonium salt (MTC) upon binding to different DNA motifs. Interaction of MTC with hybrid/mixed G-quadruplex results in a set of unique spectrophotometric signatures which are completely different from those arising from binding to other DNA motifs. Furthermore, such feature could be extended to map the locations of DNAs on interface. Linear duplex and mixed G-quadruplex in human telomeres assembled on Au film and stained by MTC were directly recognized by confocal laser scanning microscopy (CLSM). All results suggested that MTC supramolecular system may be a good probe of specific G-quadruplex structure.
Co-reporter:Xiu-feng Zhang, Hui-juan Zhang, Jun-feng Xiang, Qian Li, Qian-fan Yang, Qian Shang, Yan-xia Zhang, Ya-lin Tang
Journal of Molecular Structure 2010 Volume 982(1–3) pp:133-138
Publication Date(Web):8 October 2010
DOI:10.1016/j.molstruc.2010.08.018
It is reported that carbazole derivatives can stabilize G-quadruplex DNA structure formed by human telomeric sequence, and therefore, they have the potential to serve as anti-cancer agents. In this present study, in order to further explore the binding mode between carbazole derivatives and G-quadruplex formed by human telomeric sequence, two carbazole iodides (BMVEC, MVEC) molecules were synthesized and used to investigate the interaction with the human telomeric parallel and antiparallel G-quadruplex structures by NMR, CD and molecular modeling study. Interestingly, it is the pivotal the cationic charge pendant groups of pyridinium rings of carbazole that plays an essential role in the stabilizing and binding mode of the human telomeric sequences G-quadruplex structure. It was found that BMVEC with two cationic charge pendant groups of pyridinium rings of 9-ethylcarbazole cannot only stabilize parallel G-quadruple of Hum6 by groove binding and G-tetrad stacking modes and antiparallel G-quadruplex of Hum22 by groove binding, but also induce the formation of mixed G-quadruplex of Hum22. While MVEC with one cationic charge pendant groups of pyridinium ring only can bind with the parallel G-quadruplex of Hum6 by the stacking onto the G4 G-tetrad and could not interact with the G-quadruplex of Hum22.
Co-reporter:Qian Shang;Jun-Feng Xiang;Ya-Lin Tang
Bioanalytical Reviews 2010 Volume 1( Issue 2-4) pp:117-140
Publication Date(Web):2010 August
DOI:10.1007/s12566-010-0009-7
Cancer threatens human health, thus research focusing on oncology has great significance. Metabonomics is the global quantitative assessment of the dynamic metabolic response of a biological system to some exogenous or genetic pathophysiological perturbation. The metabolites are detected in tissues or fluids by various analytical methods, such as nuclear magnetic resonance (NMR) and mass spectroscopy. Metabonomics, as a tool, can provide a link between the laboratory and clinic. NMR-based metabonomics offers a useful tool to understand tumour biochemistry and may also has some potentials for tumour diagnosis and prognosis, even when some other disease processes are present. Here, we review NMR-based metabonomics principles and their applications in oncology research.
Co-reporter:Qianfan Yang, Junfeng Xiang, Shu Yang, Qiuju Zhou, Qian Li, Yalin Tang and Guangzhi Xu
Chemical Communications 2009 (Issue 9) pp:1103-1105
Publication Date(Web):12 Jan 2009
DOI:10.1039/B820101C
A novel cyanine dye supramolecular assembly was designed to recognize mixed G-quadruplex in human telomeres.
Co-reporter:Hongxia Sun, Qiuju Zhou, Junfeng Xiang, Yalin Tang
Bioorganic & Medicinal Chemistry Letters 2009 Volume 19(Issue 16) pp:4669-4672
Publication Date(Web):15 August 2009
DOI:10.1016/j.bmcl.2009.06.082
The interaction between polyethylenimine (PEI) and telomeric DNA was studied. The results demonstrated that PEI could effectively induce, stabilize, and regulate intramolecular G-quadruplexes. The mechanism for these results has been discussed, and was estimated to be condensation effect of PEI.General scheme of the formation of G-quadruplexes by PEI condensation.
Co-reporter:Xiu-feng Zhang, Jun-feng Xiang, Ming-yue Tian, Qian-fan Yang, Hong-xia Sun, Shu Yang and Ya-lin Tang
The Journal of Physical Chemistry B 2009 Volume 113(Issue 21) pp:7662-7667
Publication Date(Web):May 1, 2009
DOI:10.1021/jp811183a
A single-stranded G-tract human telomere DNA sequence is able to fold into intramolecular G-quadruplex structures which may be important for a number of biological processes and disease-related mechanisms. Poly(l-lysine) (PLL) polymer is linear polypeptides with lysine as the repeat unit and has been employed as a gene carrier in achieving targeted delivery of DNA to cancer cells. To explore the influence of PLL on the conformation of Hum24 DNA, we have investigated the interaction of PLL with Hum24 by biophysical methods, mainly CD, ESI-MS, and polyacrylamide gel electrophoresis for the first time. The CD data have shown that PLL can induce single-stranded Hum24 to form an intramolecular parallel G-quadruplex structure, further confirmed by ESI-MS analysis and gel electrophoresis results. The formation of an intramolecular G-quadruplex is strongly dependent on the Hum24/PLL molar ratios and the length of both the polypeptides and oligonucleotide. Such phenomena may be interpreted by electrostatically attracting negative-charged Hum24 by positive-charged PLL which facilitates the close contact between the guanines and formation of hydrogen bonding, thus leading the final shape of a G-quadruplex structure.
Co-reporter:Yazhou Zhang, Junfeng Xiang, Yalin Tang, Guangzhi Xu, Wenpeng Yan
Dyes and Pigments 2008 Volume 76(Issue 1) pp:88-93
Publication Date(Web):2008
DOI:10.1016/j.dyepig.2006.08.009
The J-aggregation behaviour of two cyanine dyes (3,3′-disulfopropyl-4,5,4′,5′-dibenzo-9-methyl-thiacarbocyanine triethylammonium salt (MTC) and 3,3′-disulfopropyl-4,5,4′,5′-dibenzo-9-phenyl-thiacarbocyanine triethylammonium salt (PTC)) has been investigated in the presence of dication chloride using absorption spectroscopy, 1H and multinuclear NMR methods. The promotion efficiency on J-aggregation of the dye molecule and the magnitude of the effective coherence length of the J-aggregate were found to be dependent on the dyes' structure and their ability to coordinate with the metal ions. The interaction between the metal ions and the J-aggregates could be explained by the association between metal ions and J-aggregates, and the apparent association constants were obtained from the chemical shifts in NMR spectra of the metal ions.
Co-reporter:Hongyan Du, Junfeng Xiang, Yazhou Zhang, Yalin Tang, Guangzhi Xu
Journal of Inorganic Biochemistry 2008 Volume 102(Issue 1) pp:146-149
Publication Date(Web):January 2008
DOI:10.1016/j.jinorgbio.2007.07.030
The action mechanism of vanadocene dichloride, Cp2VCl2 (Cp = η5–C5H5), has been investigated by interaction with human serum transferrin for its promising antitumor activities. Our results have shown that Cp2VCl2 binds to transferrin and form a new complex, and the calculated apparent association constant is 1.37 × 105 M−1 from the fluorescence quenching. Simultaneously, the variation of the secondary structure of transferrin occurs, most probably due to the coordination of the amino residues of protein with VIV. It was evidenced that Cp is released free in solution after VIV binding to transferrin by 1H NMR measurements. These results have shown that Cp2VCl2 forms a complex with transferrin, which may provide a possible pathway in the transport and targeted delivery of the antitumor agent.
Co-reporter:Qiu-Ju ZHOU;Ya-Jing BI;Jun-Feng XIANG;Ya-Lin TANG;Qian-Fan YANG;Guang-Zhi XU
Chinese Journal of Chemistry 2008 Volume 26( Issue 8) pp:1385-1389
Publication Date(Web):
DOI:10.1002/cjoc.200890252
Abstract
A potential targeting drug delivery system consisting of folate (FA), the targeting molecule, human serum albumin (HSA), the carrier, and mitoxantrone (MTO), the medicine, has been designed. Data obtained by UV absorption, fluorescence, and NMR techniques indicated the formation of ternary complexes and possible application to building a targeting drug delivery system by using FA, MTO and HSA. Furthermore, cytotoxicity assay indicated that the toxicity of the FA-HSA-MTO against PC-3 cell line was 79.95%, which was much higher than that of free MTO tested in totally the same conditions. About 30% increase of the toxicity should be owed to the targeting effect of FA. Thus, the feasibility and validity of a novel targeting drug delivery system, FA-HSA-MTO, was confirmed.
Co-reporter:Xiu-Feng Zhang, Ling Xie, Yang Liu, Jun-Feng Xiang, Ya-Lin Tang
Journal of Molecular Structure 2008 Volume 891(1–3) pp:87-92
Publication Date(Web):26 November 2008
DOI:10.1016/j.molstruc.2008.03.005
Aloe dihydroisocoumarin, one of new components isolated from Aloe vera, can scavenge reactive oxygen species. In order to explore the mechanism of drug action at a molecular level, the binding of Aloe dihydroisocoumarin with human serum albumin (HSA) has been investigated by using fluorescence, ultraviolet (UV), circular dichroism (CD) and Fourier transform infrared (FT-IR) spectroscopy, fluorescence dynamics, and molecular dynamic docking for the first time. We observed a quenching of fluorescence of HSA in the presence of Aloe dihydroisocoumarin and also analyzed the quenching results using the Stern–Volmer equation and obtained high affinity binding to HSA. An isoemissive point at 414 nm is seen, indicating that the quenching of HSA fluorescence depends on the formation of Aloe dihydroisocoumarin-HSA complex, which is further confirmed by fluorescence dynamic result. From the CD and FT-IR results, it is apparent that the interaction of Aloe dihydroisocoumarin with HSA causes a conformational change of the protein, with the gain of α-helix, β-sheet and random coil stability and the loss of β-turn content. Data obtained by fluorescence spectroscopy, fluorescence dynamics, CD, and FTIR experiments along with the docking studies suggest that Aloe dihydroisocoumarin binds to residues located in subdomain IIA of HSA.
Co-reporter:Qiuju Zhou, Junfeng Xiang, Yalin Tang, Jiangpeng Liao, Chuyi Yu, Hong Zhang, Lin Li, Yueyang Yang, Guangzhi Xu
Colloids and Surfaces B: Biointerfaces 2008 Volume 61(Issue 1) pp:75-80
Publication Date(Web):15 January 2008
DOI:10.1016/j.colsurfb.2007.07.007
The interaction between a novel promising drug (spiro[(2R,3R,4S)-4-benzyloxy-2,3-isopropylidene-dioxy-1-oxa-cyclopentane-5,5′-(2-benzoylmethylene-1,3-diaza-cyclohexane)] (SBDC)) and human serum albumin (HSA) under physiological conditions has been investigated by using fluorescence, absorption, and circular dichroism (CD) spectroscopic techniques in combination with protein–ligand docking study. It was observed that SBDC has a strong ability to quench the intrinsic fluorescence of HSA through a static quenching procedure. The association constants of SBDC with HSA were determined at different temperatures based on fluorescence quenching results. The negative ΔH and positive ΔS values in case of SBDC–HSA complex showed that apart from an initial hydrophobic association, both van der Waals interactions and hydrogen bonding play a vital role in the binding of SBDC to HSA. The quantitative analysis data of CD spectra showed that the binding of SBDC to HSA induced conformational changes in HSA and the α-helix of 52.1% in free HSA increased to 55.7% in HSA–SBDC complex. The distance between donor (HSA) and acceptor (SBDC) was obtained according to the Förster's theory of non-radiation energy transfer. Data obtained by spectroscopic techniques and protein–ligand docking study suggested that SBDC binds to residues located in subdomain IIA of HSA.
Co-reporter:Qianfan Yang, Junfeng Xiang, Qian Li, Wenpeng Yan, Qiuju Zhou, Yalin Tang and Guangzhi Xu
The Journal of Physical Chemistry B 2008 Volume 112(Issue 29) pp:8783-8787
Publication Date(Web):June 27, 2008
DOI:10.1021/jp803076d
Three small peptides (K4, K5, and K6) with different length were designed to induce the transformation of the assembled state and the chirality of cyanine dye supramolecule. The absorption and circular dichroism (CD) results indicated that, the peptides tend to induce cyanine dye to H-aggregation, competed with Na+ in PBS, which would induce dye to J-aggregation. Meanwhile, all three peptides could influence the chirality of both J-aggregates induced by Na+ and H-aggregates, among which K6 could induce chiral reversion of J-aggregates. Furthermore, molecular modeling and energy calculation results have shown that the peptides with different chain length have different conformations. This might be the reason for cyanine dye to form the different chiral assembly induced by these oligo-peptide templates.
Co-reporter:Qiuju Zhou;Lin Li;Junfeng Xiang Dr. ;Hong Zhang;Shu Yang;Qian Li;Qianfan Yang;Guangzhi Xu
Angewandte Chemie International Edition 2008 Volume 47( Issue 30) pp:5590-5592
Publication Date(Web):
DOI:10.1002/anie.200800913
Co-reporter:Qiuju Zhou;Lin Li;Junfeng Xiang Dr. ;Hong Zhang;Shu Yang;Qian Li;Qianfan Yang;Guangzhi Xu
Angewandte Chemie 2008 Volume 120( Issue 30) pp:5672-5674
Publication Date(Web):
DOI:10.1002/ange.200800913
Co-reporter:Hongyan Du, Junfeng Xiang, Yazhou Zhang, Yalin Tang
Bioorganic & Medicinal Chemistry Letters 2007 Volume 17(Issue 6) pp:1701-1704
Publication Date(Web):15 March 2007
DOI:10.1016/j.bmcl.2006.12.069
Sinomenine, an herbal ingredient isolated from Sinomenium acutum, is used for the amelioration of arthritis. It has been found that this molecule could bind to human serum transferrin (Tf), the iron (III) transport protein in the blood, by using fluorescence, circular dichroism (CD) spectroscopy, and molecular modeling methods. The results provide possible usage of transferrin to transport sinomenine.The binding of sinomenine to human transferrin via non-covalent bonds has been first characterized. Our research may be potentially applied in sinomenine transport and delivery to targeted sites by transferrin.
Co-reporter:Yazhou Zhang, Hongyan Du, Yalin Tang, Guangzhi Xu, Wenpeng Yan
Biophysical Chemistry 2007 Volume 128(2–3) pp:197-203
Publication Date(Web):July 2007
DOI:10.1016/j.bpc.2007.04.002
The interactions of three cyanine dyes, which exhibit different meso substituent in polymethine chain, with human serum albumin (HSA) have been investigated by the means of absorption, fluorescence and circular dichroism (CD) spectra. In phosphate buffer solution (PBS), the mentioned dyes exist not as isolated monomers but rather in the formation of J-aggregation. In the presence of HSA, the absorption and fluorescence emission spectra indicated that the J-aggregation was decomposed to monomer because of the strong affinity between dye molecules and HSA. Besides the association of cyanine dyes with HSA, binding to HSA gave rise to the J-aggregation CD signals. The meso substituent in the polymethine plays an important role in the interaction of HSA and the J-aggregation. Spectral studies showed that the dye bound with HSA in a 1:1 formation. The apparent constant (Ka) value was roughly identified by analysis of the corresponding fluorescence data at various HSA concentrations. The higher affinity of the molecule with meso phenyl towards HSA with respect to molecules with meso ethyl or methyl can be attributed to the arrangement of molecules in J-aggregation and the hydrophobic force between the molecules and HSA.
Co-reporter:Yazhou Zhang Dr.;Guangzhi Xu Dr.;Wenpeng Yan Dr. Dr.;Junfeng Xiang Dr.
ChemPhysChem 2007 Volume 8(Issue 2) pp:224-226
Publication Date(Web):19 DEC 2006
DOI:10.1002/cphc.200600548
Double-minded supramolecules: The interactions between human serum albumin (HSA) and J-aggregation of a cyanine dye (PTC) in phosphate buffer solution are studied. In the presence of HSA, the achiral J-aggregate shows chirality. The chirality can be inversed by adjusting the ratio of HSA to PTC and the pH value (see picture; CD=circular dichroism).
Co-reporter:Lin Li;JianNong Wang;JianXun Ren;JunFeng Xiang
Science Bulletin 2007 Volume 52( Issue 22) pp:3068-3073
Publication Date(Web):2007 November
DOI:10.1007/s11434-007-0389-4
Metabonomics analysis of the urine of rats with Qi deficiency and blood stasis syndrome has been performed by comparison with those of normal rats based on NMR techniques. The relative contents of formate, creatinine, 2-oxoglutarate (2-OG), citrate, taurine, trimethylamine-N-oxide(TMAO), succinate and hippurate in the urine of the rats with Qi deficiency and blood stasis syndrome have been changed. These results have provided evidence for understanding the mechanism and the therapy of Qi deficiency and blood stasis syndrome.
Co-reporter:Qiuju Zhou, Junfeng Xiang, Yalin Tang, Jiangpeng Liao, Chuyi Yu, Hongyan Du, Qianfan Yang, Guangzhi Xu
Pesticide Biochemistry and Physiology (September 2008) Volume 92(Issue 1) pp:43-47
Publication Date(Web):1 September 2008
DOI:10.1016/j.pestbp.2008.06.002
The interaction of a novel pesticide, NMD (spiro[(2R,3R,4S)-4-benzyloxy-2,3-iso-propylidenedioxy-1-oxacyclopentane-5,5′-(2-nitromethylene-1,3-diazacyclohexane)]), with bovine serum albumin (BSA) has been investigated by using absorption, fluorescence, and circular dichroism (CD) spectroscopy methods. Quenching of the fluorescence of BSA has been observed in the presence of NMD. The binding parameters were determined using Stern–Volmer equation. From the thermodynamic parameters calculated according to the van’t Hoff equation, the enthalpy change ΔH, and entropy change ΔS were found to be −2.71 kJ mol−1 and 82.56 J mol−1 K−1, respectively. These values suggested that, apart from an initial hydrophobic association, the complex is held together by van der Waals interactions and hydrogen bonding. These results provided a quantitative understanding of the binding of NMD to BSA, which is important in understanding its toxicity in vertebrates.
Co-reporter:Wei Gai, Qianfan Yang, Junfeng Xiang, Lijia Yu, Aijiao Guan, Qian Li, Hongxia Sun, Qian Shang, Wei Jiang, Hong Zhang, Yan Liu, Lixia Wang and Yalin Tang
Physical Chemistry Chemical Physics 2013 - vol. 15(Issue 16) pp:NaN5761-5761
Publication Date(Web):2013/03/04
DOI:10.1039/C3CP44387F
Biomolecules are promising templates that play important roles in controlling the supramolecular assembly process more flexibly and precisely due to their unique characteristic structures. Here we first present a G-quadruplex with a chair-like antiparallel motif as a novel dual-functional regulation template in the aggregation of a cyanine dye.
Co-reporter:Hongxia Sun, Junfeng Xiang, Wei Gai, Yan Liu, Aijiao Guan, Qianfan Yang, Qian Li, Qian Shang, Hui Su, Yalin Tang and Guangzhi Xu
Chemical Communications 2013 - vol. 49(Issue 40) pp:NaN4512-4512
Publication Date(Web):2013/03/26
DOI:10.1039/C3CC39020A
A G-quadruplex is identified which can exhibit two different motifs, respectively, corresponding to Na+ and K+. The relative amount of each motif is related to the Na+/K+ ratio. Based on selective recognition of the G-quadruplex motifs by a cyanine dye aggregate, a method for both colorimetric and quantitative measurements of Na+/K+ ratios is constructed.
Co-reporter:Yunhua Shi, Hongxia Sun, Junfeng Xiang, Hongbo Chen, Qianfan Yang, Aijiao Guan, Qian Li, Lijia Yu and Yalin Tang
Chemical Communications 2014 - vol. 50(Issue 97) pp:NaN15388-15388
Publication Date(Web):2014/10/21
DOI:10.1039/C4CC06980C
A simple technology to construct diverse DNA logic gates (OR and INHIBIT) has been designed utilizing a H+ and/or Ag+ induced i-motif structure. The logic gates are easily controlled and also show a real time response towards inputs. The research provides a new insight for designing DNA logic gates using an i-motif DNA structure.
Co-reporter:Lijia Yu;Qianfan Yang;Junfeng Xiang
Analytical Methods (2009-Present) 2015 - vol. 7(Issue 13) pp:NaN5489-5489
Publication Date(Web):2015/06/26
DOI:10.1039/C5AY01025J
A series of dimeric cyanine dyes with different sizes of heterocyclic aromatic substituents and the same linker were synthesized, and these dyes were demonstrated to be highly selective compounds for binding to G-quadruplex DNA. These results showed that the size of heterocyclic aromatic substituents had great influence on the self-assembly properties of these dyes as well as their interaction with G-quadruplex motifs. A dye with a large aromatic substituent (AB-P4) formed strong aggregates and also presented significant selectivity for the G-quadruplex over duplex DNA. In contrast, dyes with small aromatic rings (B-P4 and TC-P4) had a much smaller effect on the recognition of the G-quadruplex, suggesting that the possession of a suitably sized plane for good π–π stacking with the G-quadruplex was essential for the interaction of dyes with the G-quadruplex. Moreover, the loop structures of the G-quadruplex also affected the binding mode of AB-P4 with the G-quadruplex: loops located at the side of the tetrad were favorable for both end-stacking binding modes in the form of monomers, while more hindrance by the loop at one end of the tetrads resulted in one end-stacking on the G-quadruplex in the form of dimers. In comparison, loops play weak roles in dyes with TC-P4, and this dye could stack on both ends of tetrads.
Co-reporter:Yunhua Shi, Hongxia Sun, Junfeng Xiang, Hongbo Chen, Suge Zhang, Aijiao Guan, Qian Li, Shujuan Xu and Yalin Tang
Chemical Communications 2016 - vol. 52(Issue 45) pp:NaN7305-7305
Publication Date(Web):2016/05/09
DOI:10.1039/C6CC02930B
Multiple cycle regulation of the supramolecular chirality of a cyanine dye has been successfully achieved by using DNA G-quadruplexes as templates, which is easily controllable by repeated addition of Ag+ and cysteine (Cys). This work provides an easy and controllable strategy for the chiral regulation of supramolecules.
Co-reporter:Qianfan Yang, Junfeng Xiang, Shu Yang, Qiuju Zhou, Qian Li, Yalin Tang and Guangzhi Xu
Chemical Communications 2009(Issue 9) pp:NaN1105-1105
Publication Date(Web):2009/01/12
DOI:10.1039/B820101C
A novel cyanine dye supramolecular assembly was designed to recognize mixed G-quadruplex in human telomeres.