Co-reporter:Eugene K. Lee, David D. Tran, Wendy Keung, Patrick Chan, ... Michelle Khine
Stem Cell Reports 2017 Volume 9, Issue 5(Volume 9, Issue 5) pp:
Publication Date(Web):14 November 2017
DOI:10.1016/j.stemcr.2017.09.008
•Machine learning on multidimensional drug-response data to determine cardioactivity•Classify unknown drugs based on mechanistic actionAccurately predicting cardioactive effects of new molecular entities for therapeutics remains a daunting challenge. Immense research effort has been focused toward creating new screening platforms that utilize human pluripotent stem cell (hPSC)-derived cardiomyocytes and three-dimensional engineered cardiac tissue constructs to better recapitulate human heart function and drug responses. As these new platforms become increasingly sophisticated and high throughput, the drug screens result in larger multidimensional datasets. Improved automated analysis methods must therefore be developed in parallel to fully comprehend the cellular response across a multidimensional parameter space. Here, we describe the use of machine learning to comprehensively analyze 17 functional parameters derived from force readouts of hPSC-derived ventricular cardiac tissue strips (hvCTS) electrically paced at a range of frequencies and exposed to a library of compounds. A generated metric is effective for then determining the cardioactivity of a given drug. Furthermore, we demonstrate a classification model that can automatically predict the mechanistic action of an unknown cardioactive drug.
Co-reporter:M. Chu;T. T. Nguyen;E. K. Lee;J. L. Morival;M. Khine
Lab on a Chip (2001-Present) 2017 vol. 17(Issue 2) pp:267-273
Publication Date(Web):2017/01/17
DOI:10.1039/C6LC01338D
We demonstrate a facile, plasma free process to fabricate both reversibly and irreversibly sealed microfluidic chips using a PDMS-based adhesive polymer mixture. This is a versatile method that is compatible with current PDMS microfluidics processes. It allows for easier fabrication of multilayer microfluidic devices and is compatible with micropatterning of proteins for cell culturing. When combined with our Shrinky-Dink microfluidic prototyping, complete microfluidic device fabrication can be performed without the need for any capital equipment, making microfluidics accessible to the classroom.
Co-reporter:Jolie M. Nokes;Ralph Liedert;Monica Y. Kim;Ali Siddiqui;Michael Chu;Eugene K. Lee
Advanced Healthcare Materials 2016 Volume 5( Issue 5) pp:593-601
Publication Date(Web):
DOI:10.1002/adhm.201500697
The unique antiwetting properties of superhydrophobic (SH) surfaces prevent the adhesion of water and bodily fluids, including blood, urine, and saliva. While typical manufacturable approaches to create SH surfaces rely on chemical and structural modifications, such approaches are expensive, require postprocessing, and are often not biocompatible. By contrast, it is demonstrated that purely structural SH features are easily formed using high throughput roll-to-roll (R2R) manufacturing by shrinking a prestressed thermoplastic with a thin, stiff layer of silver and calcium. These features are subsequently embossed into any commercially available and Food and Drug Administration (FDA)-approved plastic. The R2R SH surfaces have contact angles >150° and contact angle hysteresis <10°. Importantly, the surfaces minimize blood adhesion, leading to reduced blood coagulation without the need for anticoagulants. SH surfaces have >4200× reduction of blood residue area compared to the nonstructured controls of the same material. In addition, blood clotting is reduced >5× using whole blood directly from the patient. Furthermore, these surfaces can be easily configured into 3D shapes, as demonstrated with SH tubes. With the simple scale-up production and the eliminated need for anticoagulants to prevent clotting, the proposed conformable SH surfaces can be impactful for a wide range of medical tools, including catheters and microfluidic channels.
Co-reporter:Sophia Lin, Per Niklas Hedde, Vasan Venugopalan, Enrico Gratton and Michelle Khine
Analyst 2016 vol. 141(Issue 13) pp:4181-4188
Publication Date(Web):29 Apr 2016
DOI:10.1039/C6AN00519E
Silica (SiO2) micro- and nanostructures fabricated with pre-stressed thermoplastic shrink wrap film have been shown to yield far-field fluorescence signal enhancements over their planar or wrinkled counterparts. The SiO2 structures have previously been used for improved detection of fluorescently labelled proteins and DNA. In this work, we probe the mechanism responsible for the dramatic increases in fluorescence signal intensity. Optical characterization studies attribute the fluorescence signal enhancements to increased surface density and light scattering from the rough SiO2 structures. Using this information, we come up with a theoretical approximation for the enhancement factor based off the scattering effects alone. We show that increased deposition thickness of SiO2 yields improved fluorescence signal enhancements, with an optimal SiO2 thin layer achieved at 20 nm. Finally, we show that the SiO2 substrates serve as a suitable platform for disease diagnostics, and show improved limits of detection (LOD) for the human immunodeficiency virus type 1 (HIV-1) p24 antigen.
Co-reporter:Jolie McLane;Chun Wu
Advanced Materials Interfaces 2015 Volume 2( Issue 1) pp:
Publication Date(Web):
DOI:10.1002/admi.201400034
Protein in urine can be detected using a simple colorimetric output by evaporating droplets on a superhydrophobic (SH) surface. Evaporation on a SH surface allows fluid to dramatically concentrate; the weak surface adhesion allows the droplet of fluid to constantly decrease its footprint area and contact diameter. On a SH surface, pure water completely evaporates. Molecules in solution, however, are confined to a footprint that is 8.5 times smaller than the original and are greatly concentrated. By concentrating molecules, a 160 times improved detection sensitivity is achieved compared to controls. With the low-cost fabrication method and simple technique, highly sensitive detection can be achieved in a low-cost platform. Utility is demonstrated by detecting protein in urine in the pre-eclampsia range (150–300 μgmL−1) for pregnant women.
Co-reporter:Sophia Lin, Eugene K. Lee, Nancy Nguyen and Michelle Khine
Lab on a Chip 2014 vol. 14(Issue 18) pp:3475-3488
Publication Date(Web):14 Jul 2014
DOI:10.1039/C4LC00528G
The field of micro- and nanofabrication has developed extensively in the past several decades with rising interest in alternative fabrication techniques. Growth of these areas has been driven by needs that remain unaddressed by traditional lithographical methods: inexpensive, upscalable, biocompatible, and easily integrated into complete lab-on-a-chip (LOC) systems. Shape memory polymers (SMPs) have been explored as an alternative substrate. This review first focuses on structure fabrication at the micron and nanoscale using specifically heat-shrinkable SMPs and highlights the innovative improvements to this technology in the past several years. The second part of the review illustrates demonstrated applications of these micro- and nanostructures fabricated from heat-shrinkable SMP films. The review concludes with a discussion about future prospects of heat-shrinkable SMP structures for integration into LOC systems.
Co-reporter:Aaron Chen, Eugene Lee, Roger Tu, Kevin Santiago, Anna Grosberg, Charless Fowlkes, Michelle Khine
Biomaterials 2014 35(2) pp: 675-683
Publication Date(Web):
DOI:10.1016/j.biomaterials.2013.10.007
Co-reporter:Himanshu Sharma, Jennifer B. Wood, Sophia Lin, Robert M. Corn, and Michelle Khine
Langmuir 2014 Volume 30(Issue 37) pp:10979-10983
Publication Date(Web):2017-2-22
DOI:10.1021/la501123b
We describe a manufacturable and scalable method for fabrication of multiscale wrinkled silica (SiO2) structures on shrink-wrap film to enhance fluorescence signals in DNA fluorescence microarrays. We are able to enhance the fluorescence signal of hybridized DNA by more than 120 fold relative to a planar glass slide. Notably, our substrate has improved detection sensitivity (280 pM) relative to planar glass slide (11 nM). Furthermore, this is accompanied by a 30–45 times improvement in the signal-to-noise ratio (SNR). Unlike metal enhanced fluorescence (MEF) based enhancements, this is a far-field and uniform effect based on surface concentration and photophysical effects from the nano- to microscale SiO2 structures. Notably, the photophysical effects contribute an almost 2.5 fold enhancement over the concentration effects alone. Therefore, this simple and robust method offers an efficient technique to enhance the detection capabilities of fluorescence based DNA microarrays.
Co-reporter:Jonathan D. Pegan, Adrienne Y. Ho, Mark Bachman and Michelle Khine
Lab on a Chip 2013 vol. 13(Issue 21) pp:4205-4209
Publication Date(Web):08 Aug 2013
DOI:10.1039/C3LC50588J
Photolithographically defined metallic thin film on commodity shrink-wrap is leveraged to create robust electrodes. By thermally shrinking the film, electrodes are reduced by 20× in footprint for improved resolution and conductivity with >600% enhancements in electrochemically active surface area; as electrochemiluminescent sensors, they demonstrate improved limits of detection.
Co-reporter:Sophia Lin;Himanshu Sharma
Advanced Optical Materials 2013 Volume 1( Issue 8) pp:568-572
Publication Date(Web):
DOI:10.1002/adom.201300180
Dense multiscale silica (SiO2) micro- and nanostructures are fabricated on a pre-stressed polymer film. This novel SiO2 substrate serves as a robust platform to enhance the fluorescence signal of bound biomolecules. Through a combination of surface concentration, light scattering, and changes in the photophysical properties of the confined dye molecules, dramatic fluorescence signal enhancements (average = 116 times greater than on planar glass) and increased signal-to-noise ratio (76:1) are demonstrated with tetramethylrhodamine isothiocyanate (TRITC)-conjugated streptavidin (STRITC) on SiO2 structures. Enhanced detection sensitivity of STRITC over glass on the SiO2 structures is achieved down to a detection limit of 11 ng mL−1. Such significant fluorescence signal enhancements have importance in practical applications such disease diagnostics and surface sensing.
Co-reporter:Himanshu Sharma;Diep Nguyen;Aaron Chen;Valerie Lew
Annals of Biomedical Engineering 2011 Volume 39( Issue 4) pp:1313-1327
Publication Date(Web):2011 April
DOI:10.1007/s10439-010-0213-1
The potential of rapid, quantitative, and sensitive diagnosis has led to many innovative ‘lab on chip’ technologies for point of care diagnostic applications. Because these chips must be designed within strict cost constraints to be widely deployable, recent research in this area has produced extremely novel non-conventional micro- and nano-fabrication innovations. These advances can be leveraged for other biological assays as well, including for custom assay development and academic prototyping. The technologies reviewed here leverage extremely low-cost substrates and easily adoptable ways to pattern both structural and biological materials at high resolution in unprecedented ways. These new approaches offer the promise of more rapid prototyping with less investment in capital equipment as well as greater flexibility in design. Though still in their infancy, these technologies hold potential to improve upon the resolution, sensitivity, flexibility, and cost-savings over more traditional approaches.
Co-reporter:Douglas Taylor, David Dyer, Valerie Lew and Michelle Khine
Lab on a Chip 2010 vol. 10(Issue 18) pp:2472-2475
Publication Date(Web):02 Aug 2010
DOI:10.1039/C004737F
This paper presents a rapid, ultra-low-cost approach to fabricate microfluidic devices using a polyolefin shrink film and a digital craft cutter. The shrinking process (with a 95% reduction in area) results in relatively uniform and consistent microfluidic channels with smooth surfaces, vertical sidewalls, and high aspect ratio channels with lateral resolutions well beyond the tool used to cut them. The thermal bonding of the layers results in strongly bonded devices. Complex microfluidic designs are easily designed on the fly and protein assays are also readily integrated into the device. Full device characterization including channel consistency, optical properties, and bonding strength are assessed in this technical note.
Co-reporter:Diep Nguyen, Douglas Taylor, Kun Qian, Nizilla Norouzi, Jerald Rasmussen, Steve Botzet, Matt Lehmann, Kurt Halverson and Michelle Khine
Lab on a Chip 2010 vol. 10(Issue 12) pp:1623-1626
Publication Date(Web):24 Mar 2010
DOI:10.1039/C001082K
Polyolefins are finding increased popularity in microfluidic applications due to their attractive mechanical, processing, and optical properties. While intricate features are typically realized in these thermoplastics by hot embossing and injection molding, such fabrication approaches are expensive and slow. Here, we apply our shrink-induced approach—first demonstrated with polystyrene ‘Shrinky-Dink’ sheets—to create micro- and nanostructures with cross-linked polyolefin thin films. These multi-layered films shrink by 95% and with greater uniformity than the Shrinky-Dinks. With such significant reduction in size, along with attractive material properties, such commodity films could find important applications in low cost microfluidic prototyping as well as in point-of-care diagnostics. In this technical note, we demonstrate the ability to rapidly and easily create unique microstructures, increase microarray feature density, and even induce self-assembled integrated metallic nanostructures with these shrink wrap films.
Co-reporter:Chi-Cheng Fu;Anthony Grimes;Maureen Long;Christopher G. L. Ferri;Brent D. Rich;Somnath Ghosh;Sayantani Ghosh;Luke P. Lee;Ajay Gopinathan
Advanced Materials 2009 Volume 21( Issue 44) pp:4472-4476
Publication Date(Web):
DOI:10.1002/adma.200902294
Co-reporter:Chi-Cheng Fu;Anthony Grimes;Maureen Long;Christopher G. L. Ferri;Brent D. Rich;Somnath Ghosh;Sayantani Ghosh;Luke P. Lee;Ajay Gopinathan
Advanced Materials 2009 Volume 21( Issue 44) pp:
Publication Date(Web):
DOI:10.1002/adma.200990163
Co-reporter:Diep Nguyen, Silin Sa, Jonathan D. Pegan, Brent Rich, Guangxin Xiang, Kara E. McCloskey, Jennifer O. Manilay and Michelle Khine
Lab on a Chip 2009 vol. 9(Issue 23) pp:3338-3344
Publication Date(Web):12 Oct 2009
DOI:10.1039/B914091C
Embryoid body (EB) formation closely recapitulates early embryonic development with respect to lineage commitment. Because it is greatly affected by cell-cell and cell-substrate interactions, the ability to control the initial number of cells in the aggregates and to provide an appropriate substrate are crucial parameters for uniform EB formation. Here we report of an ultra-rapid fabrication and culture method utilizing a laser-jet printer to generate closely arrayed honeycomb microwells of tunable sizes for the induction of uniform EBs from single cell suspension. By printing various microwell patterns onto pre-stressed polystyrene sheets, and through heat induced shrinking, high aspect micromolds are generated. Notably, we achieve rounded bottom polydimethylsiloxane (PDMS) wells not easily achievable with standard microfabrication methods, but critical to achieve spherical EBs. Furthermore, by simply controlling the size of the microwells and the concentration of the cell suspension we can control the initial size of the cell aggregate, thus influencing lineage commitment. In addition, these microwells are easily adaptable and scalable to most standard well plates and easily integrated into commercial liquid handling systems to provide an inexpensive and easy high throughput compound screening platform.