The intriguing dual-emission behavior of p- dimethylaminobenzonitrile (DMABN) and the identity of the associated excited states is, arguably, the most extensively investigated and also controversially discussed molecule- specific phenomenon of modern photochemistry. We have now found a new, third fluorescence band when DMABN is encapsulated within the water-soluble molecular container cucurbit[8]uril (CB8). It is centered between the previously observed emissions and assigned to the elusive excimer emission from DMABN through 1:2 CB8:DMABN complex formation. Heating of the CB8⋅(DMABN)₂ complex from 0 to 100 °C results in the dissociation of the ternary complex and restoration of the dual-emission properties of the monomer. Alternatively, monomer emission can be obtained by selecting cucurbit[7]uril (CB7), a host homologue that is too small to accommodate two DMABN molecules, or by introducing ethyl instead of methyl groups at the amino terminus of the aminobenzonitrile guest.

The macrocycle p-sulfonatocalix[4]arene (CX4) and the fluorescent dye lucigenin (LCG) form a stable host–guest complex, in which the dye fluorescence is quenched. Incubation of live V79 and CHO cells with the CX4/LCG chemosensing ensemble resulted in its spontaneous uptake. Subsequent addition of choline, acetylcholine, or protamine, which have a high affinity for CX4 and are capable of entering cells, resulted in a fluorescence switch-on response. This can be traced to the displacement of LCG from CX4 by the analytes. The results establish the principal functionality of indicator displacement assays with synthetic receptors for the detection of the uptake of bioorganic analytes by live cells.

Der Makrocyclus p-Sulfonatocalix[4]aren (CX4) und der Fluoreszenzfarbstoff Lucigenin (LCG) bilden einen stabilen Wirt/Gast-Komplex, in dem die Fluoreszenz des Farbstoffs gelöscht wird. Die Inkubation von lebenden V79- und CHO-Zellen mit dem chemosensorischen Ensemble CX4/LCG führt zu dessen spontaner Aufnahme. Die nachfolgende Zugabe von Cholin, Acetylcholin oder Protamin, die alle eine hohe Affinität für CX4 haben und in der Lage sind, in die Zellen einzudringen, führte zu einer positiven Fluoreszenzantwort der Zellen. Dies kann auf die Verdrängung des LCG aus CX4 durch die Analyten zurückgeführt werden. Die Ergebnisse zeigen die grundsätzliche Funktionsfähigkeit von Indikatorverdrängungsassays mit synthetisch hergestellten Rezeptoren zur Detektion der Aufnahme bioorganischer Analyten in lebenden Zellen.

A new approach towards the rapid identification of quality binders to cucurbiturils—those that combine high affinity with high selectivity for a particular homologue—was developed. The assay exploits macrocycle-specific optical fingerprints (colorimetric or fluorimetric) of carefully selected indicators dyes. The screening of a guest library revealed known (e.g., adamantane derivatives) and new (e.g., terpenes) quality binders. The predictive power of the assay was underpinned by the modeling of the involved thermodynamic equilibria.

Die Effektivität von Wirkstoffen und Biomolekülen basiert auf ihrer Fähigkeit, die Lipidmembran zu passieren. Die Entwicklung von Methoden, diese Transportprozesse direkt und mit hoher Empfindlichkeit zu verfolgen, bleibt eine Herausforderung. Der Einschluss eines chemosensorischen Ensembles, bestehend aus einem makrocyclischen Wirt (p-Sulfonatocalix[4]aren oder Cucurbit[7]uril) und einem Fluoreszenzfarbstoff (Lucigenin oder Berberin) in Liposomen ermöglicht es, den Membrandurchtritt von unmarkierten bioorganischen Molekülen direkt und in Echtzeit mittels Fluoreszenz zu verfolgen. Dieser In-vitro-Assay kann auf unterschiedliche Kanalproteine und Analyten angewendet werden, eignet sich zur schnellen Charakterisierung von Kanalmodulatoren und liefert zudem die absolute Kinetik der Translokation. Mit dieser neuen biophysikalischen Methode konnten wir erstmalig die direkte schnelle Translokation des antibiotisch wirksamen Peptids Protamin durch das bakterielle Transmembranprotein OmpF nachweisen.

The efficacy of drugs and biomolecules relies on their ability to pass through the bilayer. The development of methods to directly and sensitively monitor these membrane transport processes has remained an experimental challenge. A macrocyclic host (p-sulfonatocalix[4]arene or cucurbit[7]uril) and a fluorescent dye (lucigenin or berberine) are encapsulated as a chemosensing ensemble inside liposomes, which allows for a direct, real-time fluorescence monitoring of the passage of unlabeled bioorganic analytes. This in vitro assay is transferable to different channel proteins and analytes, has potential for fluorescence-based screening, e.g., of channel modulators, and yields the absolute kinetics of translocation. Using this new biophysical method, we observed for the first time direct rapid translocation of protamine, an antimicrobial peptide, through the bacterial transmembrane protein OmpF.

Ternary complexes between the macrocyclic host cucurbit[8]uril, dicationic dyes, and chiral aromatic analytes afford strong induced circular dichroism (ICD) signals in the near-UV and visible regions. This allows for chirality sensing and peptide-sequence recognition in water at low micromolar analyte concentrations. The reversible and noncovalent mode of binding ensures an immediate response to concentration changes, which allows the real-time monitoring of chemical reactions. The introduced supramolecular method is likely to find applications in bioanalytical chemistry, especially enzyme assays, for drug-related analytical applications, and for continuous monitoring of enantioselective reactions, particularly asymmetric catalysis.

Traditional descriptions of the hydrophobic effect on the basis of entropic arguments or the calculation of solvent-occupied surfaces must be questioned in view of new results obtained with supramolecular complexes. In these studies, it was possible to separate hydrophobic from dispersive interactions, which are strongest in aqueous systems. Even very hydrophobic alkanes associate significantly only in cavities containing water molecules with an insufficient number of possible hydrogen bonds. The replacement of high-energy water in cavities by guest molecules is the essential enthalpic driving force for complexation, as borne out by data for complexes of cyclodextrins, cyclophanes, and cucurbiturils, for which complexation enthalpies of up to −100 kJ mol⁻¹ were reached for encapsulated alkyl residues. Water-box simulations were used to characterize the different contributions from high-energy water and enabled the calculation of the association free enthalpies for selected cucurbituril complexes to within a 10 % deviation from experimental values. Cavities in artificial receptors are more apt to show the enthalpic effect of high-energy water than those in proteins or nucleic acids, because they bear fewer or no functional groups in the inner cavity to stabilize interior water molecules.

We conceptualize a novel approach towards enzyme assays based on the reversible and competitive binding of a fluorescent dye and the substrate as well as product of an enzymatic reaction to a macrocyclic host. This method was termed “supramolecular tandem assay”, and has been applied to inhibitor and activator screening, sensor array development, and enantiomeric excess determination of amino acids. The simple and rapid read-out by fluorescence allows their straightforward implementation into high-throughput screening.

The demand for practical and convenient enzyme assays for histone lysine methyltransferases (HKMTs) emerges along with the rapid development of this young class of enzymes. A supramolecular reporter pair composed of p-sulfonatocalix[4]arene (CX4) and the fluorescent dye lucigenin (LCG) has been used to monitor enzymatic trimethylation of lysine residues in peptide substrates. The assay affords a switch-ON fluorescence response and operates in a continuous, real-time, and label-free fashion. The underlying working principle relies on the higher affinity of the macrocycle towards the trimethylated product of the enzymatic reaction as compared to the substrate, which allows the assay to be carried out in the product-selective mode. The final product incorporates a trimethylammonium moiety, a known high-affinity binding motif for CX4. Two substrates corresponding to the H3 N-terminal tail, namely, S2 (RTKQTARKSTGGKAP) and S6 (QTARKSTGGS), were selected as model compounds for methylation with the Neurospora crassa Dim-5 enzyme and investigated by the newly developed supramolecular tandem HKMTs assay. Only the longer substrate S2 underwent methylation in solution. The potential of the assay for inhibitor screening was demonstrated by means of inhibition studies with 1,10-phenanthroline to afford an inhibition constant of (70±20) μM.

Cucurbit[n]urils (CBn) bind guest molecules through a combination of electrostatic interactions with the carbonyl rims and hydrophobic interactions with the inner cavity. Investigations with solvatochromic probes in CB7 reveal that the polarity of the cavity resembles that of alcohols (e.g., n-octanol), while its polarizability (P=0.12) and apparent refractive index (n_D=1.10±0.12) are extremely low, close to the gas phase. The calculated molecular quadrupole moments of CBs are extremely large (Θ_zz=−120 to −340 Buckingham). A survey of reported binding constants of neutral guests and hydrophobic residues that form 1 : 1 inclusion complexes with CB6, reveals a preferential inclusion of C3–C5 residues in its cavity. The largest guests which show non-negligible binding contain 7 heavy atoms (excluding hydrogen). For CB7, the strongest binding is observed for guests with adamantyl (10 heavy atoms) and ferrocenyl groups (11 heavy atoms), while the largest guests known to be complexed are carborane and the adduct of two pyridine derivatives (12 heavy atoms). The evaluation of different volumes shows that the most meaningful cavity, namely that responsible for binding of hydrophobic residues, is confined by the planes through the oxygen carbonyls. The volume of this inner cavity follows the formula V/ų=68+62(n−5)+12.5(n−5)², affording representative cavity volumes of 68 ų for CB5, 142 ų for CB6, 242 ų for CB7, and 367 ų for CB8. The volume of the 2 bond dipole regions is comparably smaller, amounting, for example, to 2×35 ų for CB6. The analysis of packing coefficients for representative sets of known guests with clearly defined hydrophobic binding motifs reveals average values of 47 % for CB5, 58 % for CB6, 52 % for CB7, and 53 % for CB8, which are well in line with the preferred packing (“55 % solution”, see S. Mecozzi, J. Rebek, Chem. Eur. J.1998, 4, 1016–1022) in related supramolecular host–guest assemblies. The driving force for binding of hydrophobic guests and residues by CBs is interpreted in terms of the unimportance of dispersion interactions (owing to the low polarizability of their cavity) and the dominance of classical and nonclassical hydrophobic effects related to the removal of very-high-energy water molecules (2 for CB5, 4 for CB6, 8 for CB7, and 12 for CB8) from the cavity.

The complex stability constants (K_S) and thermodynamic parameters (ΔH° and TΔS°) for the 1:1 complexation of two water-soluble calixarenes, p-sulfonatocalix[4]arene (SC4A) and 5,11,17,23-tetrasulfonato-25,26,27,28-tetrakis(n-butyl)calix[4]arene (SC4A-Bu), with organic ammonium cations and neutral spherical organic molecules, have been determined by means of isothermal titration calorimetry (ITC) in aqueous solutions at 298.15 K. The obtained results indicate that, upon complexation with these guests by SC4A-Bu, the enthalpy changes become less favorable, whereas the entropy changes become more favorable relative to SC4A complexation. These differences can be attributed to differential degrees of desolvation and removal of high-energy water as well as the change in conformation or conformational degrees of freedom upon complexation. The calorimetric investigations, accompanied by ¹H NMR and UV/Vis spectroscopy and X-ray crystallography provide a thermodynamic explanation for the different complexation behavior of SC4A and SC4A-Bu towards charged and neutral organic guests. Binding ability and molecular selectivity are discussed from the viewpoint of the conformational geometry and electronic properties of hosts and guests.

A water-based narrow-band high-efficiency dye laser was designed by means of a supramolecular host–guest chemical approach. The lasing characteristics of rhodamine B and sulforhodamine B (Kiton Red S) dyes in aqueous solution with the macrocyclic host cucurbit[7]uril (CB7) as additive were investigated in a narrow-band dye laser setup. Significant improvements in both photostability and thermo-optical properties of the aqueous CB7-complexed dye systems were observed as compared to the uncomplexed dyes in ethanol solution. The tuning curves for the new dye–CB7–water systems were constructed by measuring the laser output at different wavelengths, which showed similar peak efficiencies and red-shifted gains compared to the ethanolic solutions of the dyes, while dye laser operation revealed comparable pump threshold energies and slope efficiencies. The combined results render the dye–CB7–water system an attractive active medium for high-repetition rate dye laser operation.

The coupling of an enzymatic transformation with dynamic host-guest exchange allows the unselective binding of macrocycles to be used for highly selective analyte sensing. The resulting supramolecular tandem enzyme assays require the enzymatic substrate and its corresponding product to differ significantly in their affinity for macrocycles, for example, cation receptors, and to show a differential propensity to displace a fluorescent dye from its host-guest complex. The enzymatic transformation results in a concomitant dye displacement that can be accurately followed by optical spectroscopy, specifically fluorescence. By exploiting this label-free continuous enzyme assay principle with the fluorescent dye Dapoxyl and the macrocyclic host cucurbit[7]uril, a multiparameter sensor array has been designed, which is capable of detecting the presence of amino acids (e.g. histidine, arginine, lysine, and tyrosine) and their decarboxylases. Only in the presence of both, the particular amino acid and the corresponding decarboxylase, is the amine or diamine product formed. These products are more highly positively charged than the substrate, have a higher affinity for the macrocycle and, therefore, displace the dye from the complex. The extension of the high selectivity and μM sensitivity of the tandem assay principle has also allowed for the accurate measurement of D-lysine enantiomeric excesses of up to 99.98 %, as only the L-enantiomer is accepted by the enzyme as a substrate and is converted to the product that is responsible for the observed fluorescence signal.