Ronald Raines

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Organization: University of Wisconsin
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Co-reporter:Matthew D. Shoulders, Kimberli J. Kamer, Ronald T. Raines
Bioorganic & Medicinal Chemistry Letters 2009 19(14) pp: 3859-3862
Publication Date(Web):
DOI:10.1016/j.bmcl.2009.03.168
Co-reporter:Matthew D. Shoulders;Ilia A. Guzei;Ronald T. Raines
Biopolymers 2008 Volume 89( Issue 5) pp:443-454
Publication Date(Web):
DOI:10.1002/bip.20864

Abstract

Collagen is an abundant, triple-helical protein comprising three strands of the repeating sequence: Xaa–Yaa–Gly. (2S)-Proline and (2S,4R)-4-hydroxyproline (Hyp) are common in the primary structure of collagen. Here, we use nonnatural proline derivatives to reveal determinants of collagen stability. Specifically, we report high-yielding syntheses of (2S,4S)-4-chloroproline (clp) and (2S,4R)-4-chloroproline (Clp). We find that the molecular structure of Ac-Clp-OMe in the solid state is virtually identical to that of Ac-Hyp-OMe. In contrast, the conformational properties of Ac-clp-OMe are similar to those of Ac-Pro-OMe. Ac-Clp-OMe has a stronger preference for a trans amide bond than does Ac-Pro-OMe, whereas Ac-clp-OMe has a weaker preference. (Pro–Clp–Gly)10 forms triple helices that are significantly more stable than those of (Pro–Pro–Gly)10. Triple helices of (clp–Pro–Gly)10 have stability similar to those of (Pro–Pro–Gly)10. Unlike (Pro–Clp–Gly)10 and (clp–Pro–Gly)10, (clp–Clp–Gly)10 does not form a stable triple helix, presumably due to a deleterious steric interaction between proximal chlorines on different strands. These data, which are consistent with previous work on 4-fluoroprolines and 4-methylprolines, support the importance of stereoelectronic and steric effects in the stability of the collagen triple helix and provide another means to modulate that stability. © 2007 Wiley Periodicals, Inc. Biopolymers 89: 443–454, 2008.

This article was originally published online as an accepted preprint. The “Published Online” date corresponds to the preprint version. You can request a copy of the preprint by emailing the Biopolymers editorial office at biopolymers@wiley.com

Co-reporter:Joseph B. Binder;Ilia A. Guzei;Ronald T. Raines
Advanced Synthesis & Catalysis 2007 Volume 349(Issue 3) pp:
Publication Date(Web):2 FEB 2007
DOI:10.1002/adsc.200600264

Tuning the electronic and steric environment of olefin metathesis catalysts with specialized ligands can adapt them to broader applications, including metathesis in aqueous solvents. Bidentate salicylaldimine ligands are known to stabilize ruthenium alkylidene complexes, as well as allow ring-closing metathesis in protic media. Here, we report the synthesis and characterization of exceptionally robust olefin metathesis catalysts bearing both bidentate salicylaldimine and N-heterocyclic carbene ligands, including a trimethylammonium-functionalized complex adapted for polar solvents. NMR spectroscopy and X-ray crystallographic analysis confirm the structures of the complexes. Although the N-heterocyclic carbene–salicylaldimine ligand combination limits the activity of these catalysts in non-polar solvents, this pairing enables efficient ring-closing metathesis of both dienes and enynes in methanol and methanol/water mixtures under air.

Co-reporter:Jeet Kalia, Ronald T. Raines
Bioorganic & Medicinal Chemistry Letters 2007 Volume 17(Issue 22) pp:6286-6289
Publication Date(Web):15 November 2007
DOI:10.1016/j.bmcl.2007.09.002
Maleimides are often used for biomolecular conjugation with thiols. An underappreciated aspect of the imido group in a maleimide conjugate is its susceptibility to spontaneous hydrolysis, resulting in undesirable heterogeneity. Here, a chromophoric maleimide is used to demonstrate that both molybdate and chromate catalyze the hydrolysis of an imido group near neutral pH. Tungstate and 4-(dimethylamino)pyridine are less effective as catalysts. This work reveals a new mode of chemical reactivity for molybdate and chromate, and provides a strategy for decreasing the heterogeneity of bioconjugates derived from maleimides.
Co-reporter:Jeet Kalia;Ronald T. Raines 
ChemBioChem 2006 Volume 7(Issue 9) pp:
Publication Date(Web):9 AUG 2006
DOI:10.1002/cbic.200600150

The success of genome sequencing has heightened the demand for new means to manipulate proteins. An especially desirable goal is the ability to modify a target protein at a specific site with a functional group of orthogonal reactivity. Here, we achieve that goal by exploiting the intrinsic electrophilicity of the thioester intermediate formed during intein-mediated protein splicing. Detailed kinetic analyses of the reaction of nitrogen nucleophiles with a chromogenic small-molecule thioester revealed that the α-hydrazino acetyl group was the optimal nucleophile for attacking a thioester at neutral pH to form a stable linkage. A bifunctional reagent bearing an α-hydrazino acetamido and azido group was synthesized in high overall yield. This reagent was used to attack the thioester linkage between a target protein and intein, and thereby append an azido group to the target protein in a single step. The azido protein retained full biological activity. Furthermore, its azido group was available for chemical modification by Huisgen 1,3-dipolar azide–alkyne cycloaddition. Thus, the mechanism of intein-mediated protein splicing provides the means to install a useful functional group at a specific site—the C terminus—of virtually any protein.

Co-reporter:Luke D. Lavis;Tzu-Yuan Chao;Ronald T. Raines
ChemBioChem 2006 Volume 7(Issue 8) pp:
Publication Date(Web):6 JUN 2006
DOI:10.1002/cbic.200500559

Unlocking fluorescence. The “trimethyl lock” is an effective way to mask structurally diverse fluorescent molecules for the preparation of fluorogenic enzyme substrates. These novel probes exhibit remarkable stability in water, and this makes them useful for a variety of biochemical and biological applications.

Co-reporter:Frank W. Kotch;Ronald T. Raines
PNAS 2006 Volume 103 (Issue 9 ) pp:3028-3033
Publication Date(Web):2006-02-28
DOI:10.1073/pnas.0508783103
Collagen is the most abundant protein in animals and the major component of connective tissues. Although collagen isolated from natural sources has long served as the basis for some biomaterials, natural collagen is difficult to modify and can engender pathogenic and immunological side effects. Collagen comprises a helix of three strands. Triple helices derived from synthetic peptides are much shorter (<10 nm) than natural collagen (≈300 nm), limiting their utility. Here, we describe the synthesis of short collagen fragments in which the three strands are held in a staggered array by disulfide bonds. Data from CD spectroscopy, dynamic light scattering, analytical ultracentrifugation, atomic force microscopy, and transmission electron microscopy indicate that these “sticky-ended” fragments self-assemble via intermolecular triple-helix formation. The resulting fibrils resemble natural collagen, and some are longer (>400 nm) than any known collagen. We anticipate that our self-assembly strategy can provide synthetic collagen-mimetic materials for a variety of applications.
Co-reporter:Joshua J Higgin, Gennady I Yakovlev, Vladimir A Mitkevich, Alexander A Makarov, Ronald T Raines
Bioorganic & Medicinal Chemistry Letters 2003 Volume 13(Issue 3) pp:409-412
Publication Date(Web):10 February 2003
DOI:10.1016/S0960-894X(02)00929-0
The inhibition of ribonuclease Bi by 3′-N-hydroxyurea-3′-deoxythymidine 5′-phosphate is enhanced by 30-fold in the presence of Zn2+. Thus, an N-hydroxyurea nucleotide can recruit Zn2+ to inhibit the enzymatic activity of a ribonuclease. This result engenders a general strategy for the inhibition of non-metalloenzymes by metal complexes.Graphic
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Nature Structural and Molecular Biology 2003 10(2) pp:115-119
Publication Date(Web):23 December 2002
DOI:10.1038/nsb884
Cells produce proteases as inactive zymogens. Here, we demonstrate that this tactic can extend beyond proteases. By linking the N and C termini of ribonuclease A, we obstruct the active site with the amino acid sequence recognized by plasmepsin II, a highly specific protease from Plasmodium falciparum. We generate new N and C termini by circular permutation. In the presence of plasmepsin II, a ribonuclease zymogen gains 103-fold in catalytic activity and maintains high conformational stability. We conclude that zymogen creation provides a new and versatile strategy for the control of enzymatic activity, as well as the potential development of chemotherapeutic agents.
Co-reporter:Samuel H. Gellman, Ronald T. Raines
Current Opinion in Chemical Biology 2002 Volume 6(Issue 6) pp:727-728
Publication Date(Web):1 December 2002
DOI:10.1016/S1367-5931(02)00405-2
Co-reporter:Kenneth J Woycechowsky, Ronald T Raines
Current Opinion in Chemical Biology 2000 Volume 4(Issue 5) pp:533-539
Publication Date(Web):1 October 2000
DOI:10.1016/S1367-5931(00)00128-9
Native disulfide bond formation is critical for the proper folding of many proteins. Recent studies using newly identified protein oxidants, folding catalysts, and mutant cells provide insight into the mechanism of oxidative protein folding in vivo. This insight promises new strategies for more efficient protein production.
Fmoc-Pro-Pro-O-t-butyl ester
[2,2'-Bipyridine]-4-carboxylic acid, methyl ester, 1-oxide
[2,2'-Bipyridine]-5-carboxylic acid, methyl ester, 1-oxide
1H-Imidazole-1-sulfonyl azide hydrochloride
D-Mannopyranose, 2-deoxy-2-[(1-oxo-4-pentyn-1-yl)amino]-, 1,3,4,6-tetraacetate
Acetic acid, 2-azido-, 2,5-dioxo-1-pyrrolidinyl ester
Methyl [2,3'-bipyridine]-4-carboxylate
Carbamic acid, bis(2-aminoethyl)-, 1,1-dimethylethyl ester
3-(2-pyridinyl)-Pyridazine