Co-reporter:Hans C. Andersen
PNAS 2014 111 (32 ) pp:11572-11573
Publication Date(Web):2014-08-12
DOI:10.1073/pnas.1412827111
Co-reporter:David T. Limmer
PNAS 2014 Volume 111 (Issue 26 ) pp:9413-9418
Publication Date(Web):2014-07-01
DOI:10.1073/pnas.1407277111
We derive a phase diagram for amorphous solids and liquid supercooled water and explain why the amorphous solids of water
exist in several different forms. Application of large-deviation theory allows us to prepare such phases in computer simulations.
Along with nonequilibrium transitions between the ergodic liquid and two distinct amorphous solids, we establish coexistence
between these two amorphous solids. The phase diagram we predict includes a nonequilibrium triple point where two amorphous
phases and the liquid coexist. Whereas the amorphous solids are long-lived and slowly aging glasses, their melting can lead
quickly to the formation of crystalline ice. Further, melting of the higher density amorphous solid at low pressures takes
place in steps, transitioning to the lower-density glass before accessing a nonequilibrium liquid from which ice coarsens.
Co-reporter:Aaron S. Keys;Juan P. Garrahan
PNAS 2013 Volume 110 (Issue 12 ) pp:4482-4487
Publication Date(Web):2013-03-19
DOI:10.1073/pnas.1302665110
The glass transition refers to the nonequilibrium process by which an equilibrium liquid is transformed to a nonequilibrium
disordered solid, or vice versa. Associated response functions, such as heat capacities, are markedly different on cooling
than on heating, and the response to melting a glass depends markedly on the cooling protocol by which the glass was formed.
This paper shows how this irreversible behavior can be interpreted quantitatively in terms of an East-model picture of localized
excitations (or soft spots) in which molecules can move with a specific direction, and from which excitations with the same
directionality of motion can appear or disappear in adjacent regions. As a result of these facilitated dynamics, excitations
become correlated in a hierarchical fashion. These correlations are manifested in the dynamic heterogeneity of the supercooled
liquid phase. Although equilibrium thermodynamics is virtually featureless, a nonequilibrium glass phase emerges when the
model is driven out of equilibrium with a finite cooling rate. The correlation length of this emergent phase is large and
increases with decreasing cooling rate. A spatially and temporally resolved fictive temperature encodes memory of its preparation.
Parameters characterizing the model can be determined from reversible transport data, and with these parameters, predictions
of the model agree well with irreversible differential scanning calorimetry.
Co-reporter:Paul Madden;Adam P. Willard;David T. Limmer
PNAS 2013 Volume 110 (Issue 11 ) pp:4200-4205
Publication Date(Web):2013-03-12
DOI:10.1073/pnas.1301596110
We have applied molecular dynamics and methods of importance sampling to study structure and dynamics of liquid water in contact
with metal surfaces. The specific surfaces considered resemble the 100 and 111 faces of platinum. Several results emerge that
should apply generally, not just to platinum. These results are generic consequences of water molecules binding strongly to
surfaces that are incommensurate with favorable hydrogen-bonding patterns. We show that adlayers of water under these conditions
have frustrated structures that interact unfavorably with adjacent liquid water. We elucidate dynamical processes of water
in these cases that extend over a broad range of timescales, from less than picoseconds to more than nanoseconds. Associated
spatial correlations extend over nanometers. We show that adlayer reorganization occurs intermittently, and each reorganization
event correlates motions of several molecules. We show that soft liquid interfaces form adjacent to the adlayer, as is generally
characteristic of liquid water adjacent to a hydrophobic surface. The infrequent adlayer reorganization produces a hydrophobic
heterogeneity that we characterize by studying the degrees by which different regions of the adlayers attract small hydrophobic
particles. Consequences for electrochemistry are discussed in the context of hydronium ions being attracted from the liquid
to the metal–adlayer surface.
Co-reporter:Amish J. Patel, Patrick Varilly, Sumanth N. Jamadagni, Michael F. Hagan, David Chandler, and Shekhar Garde
The Journal of Physical Chemistry B 2012 Volume 116(Issue 8) pp:2498-2503
Publication Date(Web):January 11, 2012
DOI:10.1021/jp2107523
Water near extended hydrophobic surfaces is like that at a liquid–vapor interface, where fluctuations in water density are substantially enhanced compared to those in bulk water. Here we use molecular simulations with specialized sampling techniques to show that water density fluctuations are similarly enhanced, even near hydrophobic surfaces of complex biomolecules, situating them at the edge of a dewetting transition. Consequently, water near these surfaces is sensitive to subtle changes in surface conformation, topology, and chemistry, any of which can tip the balance toward or away from the wet state and thus significantly alter biomolecular interactions and function. Our work also resolves the long-standing puzzle of why some biological surfaces dewet and other seemingly similar surfaces do not.
Co-reporter:Amish J. Patel;Patrick Varilly;Sumanth N. Jamadagni;Hari Acharya;Shekhar Garde
PNAS 2011 108 (43 ) pp:
Publication Date(Web):2011-10-25
DOI:10.1073/pnas.1110703108
Interfaces are a most common motif in complex systems. To understand how the presence of interfaces affects hydrophobic phenomena,
we use molecular simulations and theory to study hydration of solutes at interfaces. The solutes range in size from subnanometer
to a few nanometers. The interfaces are self-assembled monolayers with a range of chemistries, from hydrophilic to hydrophobic.
We show that the driving force for assembly in the vicinity of a hydrophobic surface is weaker than that in bulk water and
decreases with increasing temperature, in contrast to that in the bulk. We explain these distinct features in terms of an
interplay between interfacial fluctuations and excluded volume effects—the physics encoded in Lum–Chandler–Weeks theory [Lum
K, Chandler D, Weeks JD (1999) J Phys Chem B 103:4570–4577]. Our results suggest a catalytic role for hydrophobic interfaces in the unfolding of proteins, for example,
in the interior of chaperonins and in amyloid formation.
Co-reporter:Amish J. Patel;Patrick Varilly;Sumanth N. Jamadagni;Hari Acharya;Shekhar Garde
PNAS 2011 108 (43 ) pp:
Publication Date(Web):2011-10-25
DOI:10.1073/pnas.1110703108
Interfaces are a most common motif in complex systems. To understand how the presence of interfaces affects hydrophobic phenomena,
we use molecular simulations and theory to study hydration of solutes at interfaces. The solutes range in size from subnanometer
to a few nanometers. The interfaces are self-assembled monolayers with a range of chemistries, from hydrophilic to hydrophobic.
We show that the driving force for assembly in the vicinity of a hydrophobic surface is weaker than that in bulk water and
decreases with increasing temperature, in contrast to that in the bulk. We explain these distinct features in terms of an
interplay between interfacial fluctuations and excluded volume effects—the physics encoded in Lum–Chandler–Weeks theory [Lum
K, Chandler D, Weeks JD (1999) J Phys Chem B 103:4570–4577]. Our results suggest a catalytic role for hydrophobic interfaces in the unfolding of proteins, for example,
in the interior of chaperonins and in amyloid formation.