William R. Schief

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Name: Schief, William
Organization: The Scripps Research Institute , USA
Department: Department of Immunology and Microbial Science
Title: Professor(PhD)
Co-reporter:Joseph G. Jardine;Daniel W. Kulp;Colin Havenar-Daughton;Anita Sarkar;Bryan Briney;Devin Sok;Fabian Sesterhenn;June Ereño-Orbea;Oleksandr Kalyuzhniy;Isaiah Deresa;Xiaozhen Hu;Skye Spencer;Meaghan Jones;Erik Georgeson;Yumiko Adachi;Michael Kubitz;Allan C. deCamp;Jean-Philippe Julien;Ian A. Wilson;Dennis R. Burton;Shane Crotty
Science 2016 Vol 351(6280) pp:1458-1463
Publication Date(Web):25 Mar 2016
DOI:10.1126/science.aad9195

Baby steps toward bNAbs

Some HIV-infected individuals develop heavily mutated, broadly neutralizing antibodies (bNAbs) that target HIV. Scientists aim to design vaccines that would elicit such antibodies. Jardine et al. report an important step toward this goal: They engineered an immunogen that could engage B cells from HIV-uninfected individuals that express the germline versions of the immunoglobulin genes harbored by a particular class of bNAbs. The frequencies of these B cells, their affinities for the immunogen, and structural analysis suggest that the immunogen is a promising candidate. Further shaping of the B cell response with subsequent immunogens may eventually elicit bNAbs in people.

Science, this issue p. 1458

Co-reporter:Devin Sok;Bryan Briney;Joseph G. Jardine;Daniel W. Kulp;Sergey Menis;Matthias Pauthner;Andrew Wood;E-Chiang Lee;Khoa M. Le;Meaghan Jones;Alejandra Ramos;Oleksandr Kalyuzhniy;Yumiko Adachi;Michael Kubitz;Skye MacPherson;Allan Bradley;Glenn A. Friedrich;Dennis R. Burton
Science 2016 Vol 353(6307) pp:1557-1560
Publication Date(Web):30 Sep 2016
DOI:10.1126/science.aah3945

Abstract

A major obstacle to a broadly neutralizing antibody (bnAb)–based HIV vaccine is the activation of appropriate B cell precursors. Germline-targeting immunogens must be capable of priming rare bnAb precursors in the physiological setting. We tested the ability of the VRC01-class bnAb germline-targeting immunogen eOD-GT8 60mer (60-subunit self-assembling nanoparticle) to activate appropriate precursors in mice transgenic for human immunoglobulin (Ig) loci. Despite an average frequency of, at most, about one VRC01-class precursor per mouse, we found that at least 29% of singly immunized mice produced a VRC01-class memory response, suggesting that priming generally succeeded when at least one precursor was present. The results demonstrate the feasibility of using germline targeting to prime specific and exceedingly rare bnAb-precursor B cells within a humanlike repertoire.

Co-reporter:Joseph G. Jardine;Takayuki Ota;Devin Sok;Matthias Pauthner;Daniel W. Kulp;Oleksandr Kalyuzhniy;Patrick D. Skog;Theresa C. Thinnes;Deepika Bhullar;Bryan Briney;Sergey Menis;Meaghan Jones;Mike Kubitz;Skye Spencer;Yumiko Adachi;Dennis R. Burton;David Nemazee
Science 2015 Vol 349(6244) pp:156-161
Publication Date(Web):10 Jul 2015
DOI:10.1126/science.aac5894

Steps in the right direction

HIV-1 mutates rapidly, making it difficult to design a vaccine that will protect people against all of the virus' iterations. A potential successful vaccine design might protect by eliciting broadly neutralizing antibodies (bNAbs), which target specific regions on HIV-1's trimeric envelope glycoprotein (Env) (see the Perspective by Mascola). Jardine et al. used mice engineered to express germline-reverted heavy chains of a particular bNAb and immunized them with an Env-based immunogen designed to bind to precursors of that bNAb. Sanders et al. compared rabbits and monkeys immunized with Env trimers that adopt a nativelike conformation. In both cases, immunized animals produced antibodies that shared similarities with bNAbs. Boosting these animals with other immunogens may drive these antibodies to further mutate into the longsought bNAbs. Chen et al. report that retaining the cytoplasmic domain of Env proteins may be important to attract bNAbs. Removing the cytoplasmic domain may distract the immune response and instead generate antibodies that target epitopes on Env that would not lead to protection.

Science, this issue p. 139, 10.1126/science.aac4223, p. 156; see also p. 191

Co-reporter:Po-Ssu Huang;Takayuki Ota;Oleksandr Kalyuzhniy;Devin Sok;Skye MacPherson;Joseph Jardine;Meaghan Jones;Sergey Menis;Jean-Philippe Julien;Andrew McGuire;Travis Nieusma;John Mathison;David Nemazee;Dennis R. Burton;David Baker;Andrew B. Ward;Leonidas Stamatatos;Ian A. Wilson
Science 2013 Volume 340(Issue 6133) pp:711-716
Publication Date(Web):10 May 2013
DOI:10.1126/science.1234150

Building Better Vaccines

In the past few years, several highly potent, broadly neutralizing antibodies (bNAbs) specific for the gp120 envelope protein of HIV-1 have been discovered. The goal of this work is to use this information to inform the design of vaccines that are able to induce such antibodies (see the Perspective by Crowe). However, because of extensive somatic hypermutation, the epitope bound by these antibodies often does not bind to the germline sequence. Jardine et al. (p. 711, published online 28 March; see the cover) used computational analysis and in vitro screening to design an immunogen that could bind to VRC01-class bNAbs and to their germline precursors. Georgiev et al. (p. 751) took advantage of the fact that only four sites on the HIV viral envelope protein seem to bind bNAbs, and sera that contain particular bNAbs show characteristic patterns of neutralization. An algorithm was developed that could successfully delineate the neutralization specificity of antibodies present in polyclonal sera from HIV-infected patients.

Co-reporter:Po-Ssu Huang;David Baker;Yih-En Andrew Ban;Lei Chen;Jason S. McLellan;Bruno E. Correia;Alexandria Schroeter;Oleksandr Kalyuzhniy;Chris Carrico;Mihai L. Azoitei;Peter D. Kwong;Roland K. Strong
Science 2011 Volume 334(Issue 6054) pp:373-376
Publication Date(Web):21 Oct 2011
DOI:10.1126/science.1209368

A two-segment HIV epitope grafted into a scaffold protein maintains high affinity for a broadly neutralizing antibody.

Co-reporter:Mihai L. Azoitei, Yih-En Andrew Ban, Jean-Philippe Julien, Steve Bryson, ... William R. Schief
Journal of Molecular Biology (6 January 2012) Volume 415(Issue 1) pp:175-192
Publication Date(Web):6 January 2012
DOI:10.1016/j.jmb.2011.10.003
Computational grafting of functional motifs onto scaffold proteins is a promising way to engineer novel proteins with pre-specified functionalities. Typically, protein grafting involves the transplantation of protein side chains from a functional motif onto structurally homologous regions of scaffold proteins. Using this approach, we previously transplanted the human immunodeficiency virus 2F5 and 4E10 epitopes onto heterologous proteins to design novel “epitope-scaffold” antigens. However, side-chain grafting is limited by the availability of scaffolds with compatible backbone for a given epitope structure and offers no route to modify backbone structure to improve mimicry or binding affinity. To address this, we report here a new and more aggressive computational method—backbone grafting of linear motifs—that transplants the backbone and side chains of linear functional motifs onto scaffold proteins. To test this method, we first used side-chain grafting to design new 2F5 epitope scaffolds with improved biophysical characteristics. We then independently transplanted the 2F5 epitope onto three of the same parent scaffolds using the newly developed backbone grafting procedure. Crystal structures of side-chain and backbone grafting designs showed close agreement with both the computational models and the desired epitope structure. In two cases, backbone grafting scaffolds bound antibody 2F5 with 30- and 9-fold higher affinity than corresponding side-chain grafting designs. These results demonstrate that flexible backbone methods for epitope grafting can significantly improve binding affinities over those achieved by fixed backbone methods alone. Backbone grafting of linear motifs is a general method to transplant functional motifs when backbone remodeling of the target scaffold is necessary.Download high-res image (79KB)Download full-size imageHighlights► We describe a new method to transplant continuous structural motifs to scaffold proteins. ► Backbone grafting transplants the motif backbone conformation and sidechains. ► We grafted the HIV 2F5 epitope onto scaffolds using backbone- or sidechain-grafting. ► Backbone grafting designs had higher 2F5 affinity than sidechain grafting designs.
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