XiangShi Tan

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Name: 谭相石; XiangShi Tan
Organization: Fudan University , China
Department: Department of Chemistry
Title: Professor(PhD)
Co-reporter:J. W. Peng;H. Yuan;X. S. Tan
Acta Crystallographica Section F 2017 Volume 73(Issue 6) pp:363-368
Publication Date(Web):2017/06/01
DOI:10.1107/S2053230X1700766X
Regulators of multiple antibiotic resistance (MarRs) are key players against toxins in prokaryotes. MarR homologues have been identified in many bacterial and archaeal species which pose daunting antibiotic resistance issues that threaten public health. The continuous prevalence of Clostridium difficile infection (CDI) throughout the world is associated with the abuse of antibiotics, and antibiotic treatments of CDI have limited effect. In the genome of C. difficile strain 630, the marR gene (ID 4913953) encodes a MarR protein. Here, MarR from C. difficile (MarRC.difficile) was subcloned and crystallized for the first time. MarRC.difficile was successfully expressed in Escherichia coli in a soluble form and was purified to near-homogeneity (>95%) by a two-step purification protocol. The structure of MarRC.difficile has been solved at 2.3 Å resolution. The crystal belonged to the monoclinic space group P43212, with unit-cell parameters a = b = 66.569, c = 83.654 Å. The structure reported reveals MarRC.difficile to be a dimer, with each subunit consisting of six α-helices and three antiparallel β-hairpins. MarRC.difficile shows high structural similarity to the MarR proteins from E. coli and Staphylococcus aureus, indicating that MarRC.difficile might be a DNA-binding protein.
Co-reporter:Yaozhu Wei, Xiaofei Zhu, Sixue Zhang, Xiangshi Tan
Journal of Inorganic Biochemistry 2017 Volume 170(Volume 170) pp:
Publication Date(Web):1 May 2017
DOI:10.1016/j.jinorgbio.2017.02.005
•Corrinoid iron-sulfur protein from Clostridium difficile (CoFeSPCd) was cloned, expressed and purified.•Properties of the [4Fe-4S] cluster and corrinoid cofactor of CoFeSPCd were characterized.•Structural modeling, UV–Vis, EPR and direct electrochemistry were performed.•Kinetics of the methyl transfer between CH3-H4folate and CoFeSP was performed.•Molecular juggling between methyl transferase (MeTrCd) and CoFeSPCd was predicted.The human pathogen Clostridium difficile infection (CDI) is one of the most important healthcare-associated infections. The Wood-Ljungdahl pathway, which is responsible for Acetyl-CoA biosynthesis, is essential for the survival of the pathogen and is absent in humans. The key proteins and enzymes involved in the pathway are attractive targets for the treatment of CDI. Corrinoid iron-sulfur protein (CoFeSP) is a key protein and acts as a methyl transformer in the Wood-Ljungdahl pathway. In this study, CoFeSP from Clostridium difficile (CoFeSPCd) was cloned, expressed in E. coli and characterized for the first time. The structure and function of CoFeSPCd were investigated using homology structure modeling, spectroscopy, electrochemistry, steady state/pre-steady state kinetics and molecular docking. The two metal centers of CoFeSPCd, corrinoid cofactor and [4Fe-4S] cluster, were characterized using metal analysis, structural modeling, UV–Vis, EPR and direct electrochemistry. The methyl transfer activity between CH3-H4folate (CH3-THF) and CoFeSPCd catalyzed by methyl transferase (MeTrCd) was determined by kinetic studies. These results provide a molecular basis for innovative drug design and development to treat human CDI.Structural and functional insights into corrinoid iron-sulfur protein from human pathogen Clostridium difficile.Download high-res image (152KB)Download full-size image
Co-reporter:Daojing Yan;Ying-Wu Lin
Metallomics (2009-Present) 2017 vol. 9(Issue 9) pp:1230-1240
Publication Date(Web):2017/09/20
DOI:10.1039/C7MT00105C
Iron-containing enzymes such as heme enzymes play crucial roles in biological systems. Three distinct heme-containing dioxygenase enzymes, tryptophan 2,3-dioxygenase (TDO), indoleamine 2,3-dioxygenase 1 (IDO1) and indoleamine 2,3-dioxygenase 2 (IDO2) catalyze the initial and rate-limiting step of L-tryptophan catabolism through the kynurenine pathway in mammals. Overexpression of these enzymes causes depletion of tryptophan and the accumulation of metabolic products, which contributes to tumor immune tolerance and immune dysregulation in a variety of disease pathologies. In the past few decades, IDO1 has garnered the most attention as a therapeutic target with great potential in cancer immunotherapy. Many potential inhibitors of IDO1 have been designed, synthesized and evaluated, among which indoximod (D-1-MT), INCB024360, GDC-0919 (formerly NLG-919), and an IDO1 peptide-based vaccine have advanced to the clinical trial stage. However, recently, the roles of TDO and IDO2 have been elucidated in immune suppression. In this review, the current drug discovery landscape for targeting TDO, IDO1 and IDO2 is highlighted, with particular attention to the recent use of drugs in clinical trials. Moreover, the crystal structures of these enzymes, in complex with inhibitors, and the mechanisms of Trp catabolism in the first step, are summarized to provide information for facilitating the discovery of new enzyme inhibitors.
Co-reporter:Yaqin Zhao, Qiming Xu, Wei Xu, Dandan Wang, Jason Tan, Cuiqing Zhu and Xiangshi Tan  
Metallomics 2016 vol. 8(Issue 7) pp:644-647
Publication Date(Web):25 Nov 2015
DOI:10.1039/C5MT00242G
The molecular mechanism of CeONP in protecting against neuronal cytotoxicity from amyloid peptides and copper ions was investigated systematically by photoluminescence of [Ru(phen)2dppz]2+, morphology of TEM, mass spectroscopy, cell viability assay, ROS fluorescence assay, and EPR. The results revealed that CeONPs reduced Aβ1–42 aggregation, protected from neurotoxicity of ROS induced by Cu2+ + Aβ1–42via blocking the production of free radicals and scavenging the radicals with Ce3+/Ce4+ catalytic cycles, which provides a valuable insight into CeONPs as a therapeutic intervention in oxidative damage in Alzheimer's disease.
Co-reporter:Jie Pan, Xiaoxue Zhang, Hong Yuan, Qiming Xu, Huijuan Zhang, Yajun Zhou, Zhong-Xian Huang, Xiangshi Tan
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2016 Volume 1864(Issue 5) pp:488-500
Publication Date(Web):May 2016
DOI:10.1016/j.bbapap.2016.02.012
•A fluorophore FlAsH-EDT2 monitoring protein conformational change is labeled at different domains of sGC β1 by mutagenesis.•The molecular mechanism of sGC oxidation and loss induced by conformational change is studied based on FRET.•The synergistic effect of the conformational changes could force the heme pocket open and heme loss.•The kinetics of heme loss from oxidized sGC is monitored by the heme de-quenching the fluorescence of FlAsH-EDT2.Heme oxidation and loss of soluble guanylate cyclase (sGC) is thought to be an important contributor to the development of cardiovascular diseases. Nevertheless, it remains unknown why the heme loses readily in oxidized sGC. In the current study, the conformational change of sGC upon heme oxidation by ODQ was studied based on the fluorescence resonance energy transfer (FRET) between the heme and a fluorophore fluorescein arsenical helix binder (FlAsH-EDT2) labeled at different domains of sGC β1. This study provides an opportunity to monitor the domain movement of sGC relative to the heme. The results indicated that heme oxidation by ODQ in truncated sCC induced the heme-associated αF helix moving away from the heme, the Per/Arnt/Sim domain (PAS) domain moving closer to the heme, but led the helical domain going further from the heme. We proposed that the synergistic effect of these conformational changes of the discrete region upon heme oxidation forces the heme pocket open, and subsequent heme loss readily. Furthermore, the kinetic studies suggested that the heme oxidation was a fast process and the conformational change was a relatively slow process. The kinetics of heme loss from oxidized sGC was monitored by a new method based on the heme group de-quenching the fluorescence of FlAsH-EDT2.
Co-reporter:Dao-Jing Yan, Hong Yuan, Wei Li, Yu Xiang, Bo He, Chang-Ming Nie, Ge-Bo Wen, Ying-Wu Lin and Xiangshi Tan  
Dalton Transactions 2015 vol. 44(Issue 43) pp:18815-18822
Publication Date(Web):30 Sep 2015
DOI:10.1039/C5DT03040D
A heme–protein cross-link is a key post-translational modification (PTM) of heme proteins. Meanwhile, the structural and functional consequences of heme-protein cross-links are not fully understood, due to limited studies on a direct comparison of the same protein with and without the cross-link. A Tyr–heme cross-link with a C–O bond is a newly discovered PTM of heme proteins, and is spontaneously formed in F43Y myoglobin (Mb) between the Tyr hydroxyl group and the heme 4-vinyl group in vivo. In this study, we found that with an additional distal His29 introduced in the heme pocket, the double mutant L29H/F43Y Mb can form two distinct forms under different protein purification conditions, with and without a novel Tyr–heme cross-link. By solving the X-ray structures of both forms of L29H/F43Y Mb and performing spectroscopic studies, we made a direct structural and functional comparison in the same protein scaffold. It revealed that the Tyr–heme cross-link regulates the heme distal hydrogen-bonding network, and fine-tunes not only the spectroscopic and ligand binding properties, but also the protein reactivity. Moreover, the formation of the Tyr–heme cross-link in the double mutant L29H/F43Y Mb was investigated in vitro. This study addressed the key issue of how Tyr–heme cross-link fine-tunes the structure and functions of the heme protein, and provided a plausible mechanism for the formation of the newly discovered Tyr–heme cross-link.
Co-reporter:Wei Li;Hongfei Wang;Cheng Lei;Tianlei Ying
Amino Acids 2015 Volume 47( Issue 5) pp:987-995
Publication Date(Web):2015 May
DOI:10.1007/s00726-015-1927-z
Clostridium difficile is a human pathogen that causes severe antibiotic-associated Clostridium difficile infection (CDI). Herein the MnSODcd from C. difficile was cloned, expressed in Escherichia Coli,and characterized by X-ray crystallography, UV/Vis and EPR spectroscopy, and activity assay, et al. The crystal structure of MnSODcd (2.32 Å) reveals a manganese coordination geometry of distorted trigonal bipyramidal, with His111, His197 and Asp193 providing the equatorial ligands and with His56 and a hydroxide or water forming the axial ligands. The catalytic activity of MnSODcd (8,600 U/mg) can be effectively inhibited by 2-methoxyestradiol with an IC50 of 75 μM. The affinity investigation between 2-methoxyestradiol and MnSODcd by ITC indicated a binding constant of 8.6 μM with enthalpy changes (ΔH = −4.08 ± 0.03 kcal/mol, ΔS = 9.53 ± 0.02 cal/mol/deg). An inhibitory mechanism of MnSODcd by 2-methoxyestradiol was probed and proposed based on molecular docking models and gel filtration analysis. The 2-methoxyestradiol may bind MnSODcd to interfere with the cross-linking between the two active sites of the dimer enzyme, compromising the SOD activity. These results provide valuable insight into the rational design of MnSODcd inhibitors for potential therapeutics for CDI.
Co-reporter:Dao-Jing Yan;Dr. Wei Li;Dr. Yu Xiang; Dr. Ge-Bo Wen; Dr. Ying-Wu Lin; Dr. Xiangshi Tan
ChemBioChem 2015 Volume 16( Issue 1) pp:47-50
Publication Date(Web):
DOI:10.1002/cbic.201402504

Abstract

Heme post-translational modification plays a key role in tuning the structure and function of heme proteins. We herein report a novel tyrosine–heme covalent CO bond in an artificially produced sperm whale myoglobin (Mb) mutant, F43Y Mb, which formed spontaneously in vivo between the Tyr43 hydroxy group and the heme 4-vinyl group. This highlights the diverse chemistry of heme post-translational modifications, and lays groundwork for further investigation of the structural and functional diversity of covalently-bound heme proteins.

Co-reporter:Wei Li, Hongfei Wang, Zheng Chen, Qing Ye, Yang Tian, Xin Xu, Zhongxian Huang, Pingwei Li and Xiangshi Tan  
Chemical Communications 2014 vol. 50(Issue 5) pp:584-586
Publication Date(Web):22 Oct 2013
DOI:10.1039/C3CC47859A
The molecular mechanism of the metal specificity to superoxide dismutase from human pathogen C. difficile (SODcd) was investigated by X-ray crystallography, spectroscopy, SOD activity assay, electrochemistry, and DFT calculations, and the results indicate that the cognate metal characters tuned by the metal micro-environment dominate the metal specificity of the SODcd.
Co-reporter:Wei Li, Hongfei Wang, Qingli Wang and Xiangshi Tan  
Metallomics 2014 vol. 6(Issue 8) pp:1540-1548
Publication Date(Web):04 Jun 2014
DOI:10.1039/C4MT00090K
Clostridium difficile, which inhabits the human digestive tract, is an etiological agent that causes pseudomembranous colitis and antibiotic-associated diarrhea. The oxidative stress tightly relates to its virulence, which highlights the function of its superoxide dismutase (SOD). The SOD from Clostridium difficile (SODcd) is a Mn/Fe cambialistic SOD with MnSODcd exhibiting an optimal activity while Fe-sub-MnSODcd showing 10-fold less activity. To explain why the Fe-loaded protein exhibits a much lower activity than the Mn-loaded form, Fe-sub-MnSODcd and MnSODcd were expressed in E. coli using M9 minimal medium, and characterized by X-ray crystallography, metal analysis, optical and EPR pH titration, azide binding affinity, etc. The pKa values of the active site residues and substrate affinities determined by spectroscopic titrations indicated that MnSODcd has a higher affinity for the substrate compared to Fe-sub-MnSODcd, while Fe-sub-MnSODcd has more affinity for OH−. The different tendency of the anion ligation may be ascribed to the electronic configurations of Fe3+ in d5vs. Mn3+ in d4, and it could be tuned by the hydrogen-bonding network around the active site of SODcd. Furthermore, the free energy for the O2˙− oxidation–reduction transition state from DFT calculation demonstrated that MnSODcd could disproportionate O2˙− more easily than Fe-sub-MnSODcd. These results revealed that SODcd could exquisitely differentiate between the Mn- and Fe-based activity. This metal specificity for SODcd may benefit the pathogenicity of C. difficile and pave a fundamental way for retarding C. difficile associated diseases.
Co-reporter:Jie Pan, Qiming Xu, Ying-Wu Lin, Fangfang Zhong and Xiangshi Tan  
Chemical Communications 2013 vol. 49(Issue 67) pp:7454-7456
Publication Date(Web):27 Jun 2013
DOI:10.1039/C3CC43321H
Human soluble guanylate cyclase (hsGC), a NO sensor/NO receptor of a heterodimeric hemoprotein, plays a critical role in the NO-sGC-cGMP signaling pathway, and also reveals a novel nitrite reductase activity. This indicates that hsGC could activate itself by catalytic reduction of nitrite to NO instead of receiving NO from nitric oxide synthase (NOS), which provides valuable insight into the physiological function of the homodimeric hsGC.
Co-reporter:Xiaoping Lv, Wei Li, Ying Luo, Dandan Wang, Cuiqing Zhu, Zhong-Xian Huang and Xiangshi Tan  
Chemical Communications 2013 vol. 49(Issue 52) pp:5865-5867
Publication Date(Web):09 May 2013
DOI:10.1039/C3CC40779A
The differences between mouse mAβ1–42 and human hAβ1–42, explored using CD and fluorescence spectroscopy, transmission electron microscopy, ROS fluorescent assay, and neuronal cell viability, revealed that mAβ1–42 as a three-site mutant (R5G, Y10F and H13R) of hAβ1–42 altered the metal (copper and zinc) binding sites, reduced the proneness to form β-sheet structures and aggregated fibrils, alleviated the generation of ROS, and decreased the cytotoxicity, in contrast to hAβ1–42.
Co-reporter:Yi Liu, Qingli Wang, Yaozhu Wei, Ying-Wu Lin, Wei Li, Ji-Hu Su, Zhen Wang, Yang Tian, Zhong-Xian Huang and Xiangshi Tan  
Chemical Communications 2013 vol. 49(Issue 14) pp:1452-1454
Publication Date(Web):03 Jan 2013
DOI:10.1039/C2CC38224E
Truncated acetyl-coenzyme A synthase (ACS) was successfully converted into functional nickel superoxide dismutase (Ni-SOD) by molecular design and the designed metalloproteins possess new spectroscopic, structural, and electrochemical characteristics required for catalyzing O2˙− disproportionation, and exhibit impressive Ni-SOD activity.
Co-reporter:Yi Liu, Wei Li, Yaozhu Wei, Yindi Jiang and Xiangshi Tan  
Metallomics 2013 vol. 5(Issue 10) pp:1448-1457
Publication Date(Web):24 Jul 2013
DOI:10.1039/C3MT00163F
TroR is a putative metal-dependent regulatory protein that has been linked to the virulence of the human pathogen Treponema pallidum. It shares high homology with the well-known iron-dependent regulatory protein DtxR from Corynebacterium diphtheriae, as well as the manganese-dependent MntR from Bacillus subtilis. However, it has been uncertain whether manganese or zinc is the natural cofactor of TroR to date. Herein, we established an efficient method named “double-fusion tagging” to obtain soluble TroR for the first time. A series of studies, including ICP, CD, fluorescence, ITC, and electrophoresis mobility shift assay (EMSA), were performed to resolve the discrepancies in its metal-binding specificity. In addition, bioinformatic analysis as well as mutation studies were carried out to find the genetic relationships of TroR with its homology proteins. In conclusion, our findings indicate that TroR is a manganese-dependent rather than a zinc-dependent regulatory protein.
Co-reporter:Xiaofei Zhu, Tiejun Li, Xiang Gu, Sixue Zhang, Yi Liu, Yu Wang and Xiangshi Tan  
Metallomics 2013 vol. 5(Issue 5) pp:551-558
Publication Date(Web):03 Apr 2013
DOI:10.1039/C3MT20257G
Methyltransferase (MeTrCd) and acetyl-coenzyme A synthase (ACSCd) are two key enzymes in the acetyl-coenzyme A synthesis pathway of the human pathogen Clostridium difficile. The pathway is absent in humans and is essential for the survival of the pathogen. MeTrCd and ACSCd were cloned, expressed in E. coli, and characterized for the first time. Structural and functional investigations of the two enzymes were performed using homology structure modeling, fluorescence spectroscopy, and steady state/pre-steady state kinetics. The conformational change and methyl transfer activity of MeTrCd were shown to be pH dependent. The kinetic studies of MeTrCd at the optimal pH 5.1 yield the parameters kcat (2.63 s−1), Km (17.8 μM) and kcat/Km (0.15 μM−1 s−1). The active site metal cluster (A-cluster) of ACSCd, [Fe4S4][NipNid], was characterized using metal analysis, structural modeling, and UV/Vis spectra of the characteristic features of [Fe4S4] cubane. Nip, as a labile metal, can be removed by treatment with chelators, resulting in the loss of ACS activity. Three bidentate chelators (1,10-phenanthroline, 8-hydroxyquinoline, and 2,2-dipyridyl) exhibited excellent inhibition effects on ACSCd methyl group transfer and acetyl-coenzyme A synthesis activity. These inhibitory effects were further examined using antibacterial activity assays against Clostridium difficile. These results provide a new strategy to find new potential antibiotics for the treatment of CDI.
Co-reporter:Ying Luo;Yuxia Xu;Qingui Bao;Zhichun Ding
JBIC Journal of Biological Inorganic Chemistry 2013 Volume 18( Issue 1) pp:39-47
Publication Date(Web):2013 January
DOI:10.1007/s00775-012-0947-3
Aggregation and cytotoxicity of Aβ with redox-active metals in neuronal cells have been implicated in the progression of Alzheimer disease. Human metallothionein (MT) 3 is highly expressed in the normal human brain and is downregulated in Alzheimer disease. Zn7MT3 can protect against the neuronal toxicity of Aβ by preventing copper-mediated Aβ aggregation, abolishing the production of reactive oxygen species (ROS) and the related cellular toxicity. In this study, we intended to decipher the roles of single-domain proteins (α/β) and the α–β domain–domain interaction of Zn7MT3 to determine the molecular mechanism for protection against the neuronal cytotoxicity of Aβ1–42 with copper ions. With this in mind, the α and β single-domain proteins, heterozygous β(MT3)–α(MT1), and a linker-truncated mutant ∆31–34 were prepared and characterized. In the presence/absence of various Zn7MT3 proteins, the Aβ1–42–Cu2+-mediated aggregation, the production of ROS, and the cellular toxicity were investigated by transmission electron microscopy, ROS assay by means of a fluorescent probe, and SH-SY5Y cell viability, respectively. The β domain cannot abolish Aβ1–42–Cu2+-induced aggregation, and neither the β domain nor the α domain can quench the production of ROS because of the redox cycling of Aβ–Cu2+. Similarly to wild-type Zn7MT3, the heterozygous β(MT3)–α(MT1) possesses the characteristic of alleviating Aβ1–42 aggregation and oxidative stress to neuronal cells. Therefore, the two domains through the linker Lys-Lys-Ser form a cooperative unit, and each of them is indispensable in conducting its bioactivity. The α domain plays an important role in modulating the stability of the metal–thiolate cluster, and the α–β domain–domain interaction through the linker is critical for its protective role in the brain.
Co-reporter:Fang Fang Zhong, Xiao Xiao Liu, Jie Pan, Zhong Xian Huang, Xiang Shi Tan
Chinese Chemical Letters 2012 Volume 23(Issue 8) pp:973-976
Publication Date(Web):August 2012
DOI:10.1016/j.cclet.2012.06.005
Soluble guanylate cyclase (sGC) is a critical heme-containing enzyme involved in NO signaling. The dimerization of sGC subunits is necessary for its bioactivity and its mechanism is a striking and an indistinct issue. The roles of heme domain cysteines of the sGC on the dimerization and heme binding were investigated herein. The site-directed mutations of three conserved cysteines (C78A, C122A and C174S) were studied systematically and the three mutants were characterized by gel filtration analysis, UV–vis spectroscopy and heme transfer examination. Cys78 was involved in heme binding but not referred to the dimerization, while Cys174 was demonstrated to be involved in the homodimerization. These results provide new insights into the cysteine-related dimerization regulation of sGC.
Co-reporter:Ying Luo, Yu Xia Xu, Qin Gui Bao, Zhi Chun Ding, Cui Qing Zhu, Zhong Xian Huang, Xiang Shi Tan
Chinese Chemical Letters 2012 Volume 23(Issue 10) pp:1193-1196
Publication Date(Web):October 2012
DOI:10.1016/j.cclet.2012.08.002
Cytotoxicity of Aβ with redox active metals in neuronal cells has been implicated in the progression of Alzheimer's disease (AD). Zn7MT-3 protects cell against Aβ–Cu2+ toxicity. The roles of single domain proteins (α/β) and α–β domain–domain interaction of Zn7MT-3 in its anti-Aβ1–42–Cu2+ toxicity activity were investigated herein. Aβ1–42 and four mutants of human MT3 (α/β domain, β (MT3)–α (MT1) and Δ31–34) were prepared and characterized. Aβ1–42–Cu2+ induced hydroxyl radical and ROS production with/without Zn-MTs were measured by fluorescence spectroscopy and DCFH-DA in living cells, respectively. These results indicate that the two domains form a co-operative unit and each of them is indispensable in conducting its bioactivity.
Co-reporter:Hongyan Wang;Fangfang Zhong;Jie Pan
JBIC Journal of Biological Inorganic Chemistry 2012 Volume 17( Issue 5) pp:719-730
Publication Date(Web):2012 June
DOI:10.1007/s00775-012-0891-2
Soluble guanylate cyclase (sGC) mediates NO signaling for a wide range of physiological effects in the cardiovascular system and the central nervous system. The α1β1 isoform is ubiquitously distributed in cytosolic fractions of tissues, whereas α2β1 is mainly found in the brain. The major occurrence and the unique characteristic of human sGC α2β1 indicate a special role in the mediation of neuronal communication. We have efficiently purified and characterized the recombinant heme-binding domain of the human sGC α2 subunit (hsGC α2H) and heterodimeric α2β1 (hsGC β1H–α2H) by UV–vis spectroscopy, circular dichrosim spectroscopy, EPR spectroscopy, and homology modeling. The heme dissociation and related NO/CO binding/dissociation of both hsGC α2H and hsGC β1H–α2H were investigated. The two truncated proteins interact with heme noncovalently. The CO binding affinity of hsGC α2H is threefold greater than that of human sGC α1H, whereas the dissociation constant k1 for dissociation of NO from hsGC α2H is sevenfold larger than that for dissociation of NO from hsGC α1H, although k2 is almost identical. The results indicate that in comparison with the α1β1 isoform, the brain α2β1 isoform exhibits a distinctly different CO/NO affinity and binding rate in favor of NO signaling, and this is consistent with its physiological role in the activation and desensitization. Molecular modeling and sequence alignments are consistent with the hypothesis that His105 contributes to the different CO/NO binding properties of different isoforms. This valuable information is helpful to understand the molecular mechanism by which human sGC α2β1 mediates NO/CO signaling.
Co-reporter:Dr. Chang Shu;Min Woo Sung;Mikaela D. Stewart;Dr. Tatyana I. Igumenova; Pingwei Li
ChemBioChem 2012 Volume 13( Issue 6) pp:788-791
Publication Date(Web):
DOI:10.1002/cbic.201200043
Co-reporter:Dr. Chang Shu;Min Woo Sung;Mikaela D. Stewart;Dr. Tatyana I. Igumenova; Pingwei Li
ChemBioChem 2012 Volume 13( Issue 6) pp:
Publication Date(Web):
DOI:10.1002/cbic.201290018
Co-reporter:Yi Liu, Xiaofei Zhu, Feng Wang, Tianlei Ying, Pingwei Li, Zhong-Xian Huang and Xiangshi Tan  
Chemical Communications 2011 vol. 47(Issue 4) pp:1291-1293
Publication Date(Web):22 Nov 2010
DOI:10.1039/C0CC03587D
The A-cluster of acetyl-coenzyme A synthase consists of an [Fe4S4] cubane bridged to a [NipNid] centre via C509 cysteinate. The bridging cysteinate, which could be substituted by histidine imidazole, mediates “communication” between the [Fe4S4] cubane and the [NipNid] centre during the synthesis of acetyl-coenzyme A.
Co-reporter:Fangfang Zhong;Jie Pan;Xiaoxiao Liu
JBIC Journal of Biological Inorganic Chemistry 2011 Volume 16( Issue 8) pp:1227-1239
Publication Date(Web):2011 December
DOI:10.1007/s00775-011-0811-x
Human soluble guanylate cyclase (sGC), a critical heme-containing enzyme in the NO-signaling pathway of eukaryotes, is an αβ heterodimeric hemoprotein. Upon the binding of NO to the heme, sGC catalyzes the conversion of GTP to cyclic GMP, playing a crucial role in many physiological processes. However, the specific contribution of the α and β subunits of sGC in the intact heme binding remained intangible. The recombinant human sGC α1 subunit has been expressed in Escherichia coli and characterized for the first time. The heme binding and related NO/CO binding properties of both the α1 subunit and the β1 subunit were investigated via heme reconstitution, UV–vis spectroscopy, EPR spectroscopy, stopped-flow kinetics, and homology modeling. These results indicated that the α1 subunit of human sGC, lacking the conserved axial ligand, is likely to interact with heme noncovalently. On the basis of the equilibrium and kinetics of CO binding to sGC, one possible CO binding model was proposed. CO binds to human sGCβ195 by simple one-step binding, whereas CO binds to human sGCα259, possibly from both axial positions through a more complex process. The kinetics of NO dissociation from human sGC indicated that the NO dissociation from sGC was complex, with at least two release phases, and human sGCα259 has a smaller k1 but a larger k2. Additionally, the role of the cavity of the α1 subunit of human sGC was explored, and the results indicate that the cavity likely accommodates heme. These results are beneficial for understanding the overall structure of the heme binding site of the human sGC and the NO/CO signaling mechanism.
Co-reporter:Yi Liu;Dr. Feng Wang; Pingwei Li; Xiangshi Tan
ChemBioChem 2011 Volume 12( Issue 9) pp:1417-1421
Publication Date(Web):
DOI:10.1002/cbic.201100101
Co-reporter:Qingui Bao;Ying Luo;Wei Li;Xiaobo Sun
JBIC Journal of Biological Inorganic Chemistry 2011 Volume 16( Issue 5) pp:809-816
Publication Date(Web):2011 June
DOI:10.1007/s00775-011-0783-x
The β-amyloid peptide (Aβ) aggregation in the brain, known as amyloid plaques, is a hallmark of Alzheimer’s disease (AD). The aberrant interaction of Cu2+ ion with Aβ potentiates AD by inducing Aβ aggregation and generating neurotoxic reactive oxygen species (ROS). In this study, the biosynthesized recombinant Aβ1–40 was, for the first time, used to investigate the mechanism for heme to prevent Aβ1–40 aggregation and its cytotoxicity. Cell viability studies of SH-SY5Y cells and rat primary hippocampal neurons showed that exogenous heme can protect the cells by reducing cytotoxicity in the presence of Cu2+ and/or Aβ1–40. UV–vis spectroscopy, circular dichroism spectroscopy, and differential pulse voltammetry were applied to examine the interaction between heme and Aβ1–40. It was proven that a heme–Aβ1–40 complex is formed and can stabilize the α-helix structure of Aβ1–40 to inhibit Aβ1–40 aggregation. The heme–Aβ1–40 complex possesses peroxidase activity and it may catalyze the decomposition of H2O2, reduce the generation of ROS downstream, and ultimately protect the cells. These results indicated that exogenous heme is able to alleviate the cytotoxicity induced by Aβ1–40 and Cu2+. This information may be a foundation to develop a potential strategy to treat AD.
Co-reporter:Hualin Jiang;Fangfang Zhong;Lu Sun;Weiyue Feng;Zhong-Xian Huang
Amino Acids 2011 Volume 40( Issue 4) pp:1195-1204
Publication Date(Web):2011 April
DOI:10.1007/s00726-010-0743-8
The cytochrome P450 (CYP) superfamily plays a key role in the oxidative metabolism of a wide range of drugs and exogenous chemicals. CYP2C8 is the principal enzyme responsible for the metabolism of the anti-cancer drug paclitaxel in the human liver. Nearly all previous works about polymorphic variants of CYP2C8 were focused on unpurified proteins, either cells or human liver microsomes; therefore their structure–function relationships were unclear. In this study, two polymorphic enzymes of CYP2C8 (CYP2C8.4 (I264M) and CYP2C8 P404A) were expressed in E. coli and purified. Metabolic activities of paclitaxel by the two purified polymorphic enzymes were observed. The activity of CYP2C8.4 was 25% and CYP2C8 P404A was 30% of that of WT CYP2C8, respectively. Their structure–function relationships were systematically investigated for the first time. Paclitaxel binding ability of CYP2C8.4 increased about two times while CYP2C8 P404A decreased about two times than that of WT CYP2C8. The two polymorphic mutant sites of I264 and P404, located far from active site and substrate binding sites, significantly affect heme and/or substrate binding. This study indicated that two important nonsubstrate recognition site (SRS) residues of CYP2C8 are closely related to heme binding and/or substrate binding. This discovery could be valuable for explaining clinically individual differences in the metabolism of drugs and provides instructed information for individualized medication.
Co-reporter:Dr. Tianlei Ying;Fangfang Zhong;Dr. Zhong-Hua Wang;Wei Li; Xiangshi Tan; Zhong-Xian Huang
ChemBioChem 2011 Volume 12( Issue 5) pp:707-710
Publication Date(Web):
DOI:10.1002/cbic.201000631
Co-reporter:Tianlei Ying, Zhong-Hua Wang, Fangfang Zhong, Xiangshi Tan and Zhong-Xian Huang  
Chemical Communications 2010 vol. 46(Issue 20) pp:3541-3543
Publication Date(Web):09 Apr 2010
DOI:10.1039/B926261J
We demonstrate for the first time that cytochrome c undergoes a distinct pathway in the alkaline conformational transition from its pro-apoptotic conformational transition, which may have important functional consequences in vivo.
Co-reporter:Lu Sun;Zhonghua Wang;Hualin Jiang;Zhongxian Huang
Chinese Journal of Chemistry 2010 Volume 28( Issue 8) pp:1491-1502
Publication Date(Web):
DOI:10.1002/cjoc.201090255

Abstract

Transitions among various heme coordination/spin states, heme environments and protein conformations of human cytochrome P450 2C8 were investigated under different denaturing conditions by means of electronic absorption and circular dichroism spectroscopies. It is the first report of it's kind. Our results indicated that the thermal and acid-induced denaturation could convert P450 2C8 to various P420 forms. In the thermal unfolding process, the ferric P420 thermal form emerged with weakened Fe-S (thiolate) bond. An absorption band at ca. 425 nm of the ferrous P420 2C8 thermal form was observed, suggesting that the axial Cys435 was protonated or displaced by other ligand. Moreover, the new coordination bond was stabilized when the temperature was cooled down. When binding with CO, the ferrous P420 2C8 thermal form had the protonated thiol of Cys435 as the axial ligand. X-ray structure of P450 2C8 suggested that the specific structure of the β-bulge where the axial cysteine ligand located might be the reason of the formation of these P420 2C8 thermal forms. In the acid-induced unfolding studies, we found that at pH 3.0 the heme could be irreversibly released from the heme pocket of ferric and ferrous P450 2C8. Interestingly, the released heme could form a new coordination bond with an unidentified ligand at the surface of partially unfolded protein when binding with CO at reduced state.

Co-reporter:Fangfang Zhong;Hongyan Wang;Tianlei Ying;Zhong-Xian Huang
Amino Acids 2010 Volume 39( Issue 2) pp:399-408
Publication Date(Web):2010 July
DOI:10.1007/s00726-009-0453-2
Soluble guanylate cyclase (sGC), as a nitric oxide (NO) sensor, is a critical heme-containing enzyme in NO-signaling pathway of eukaryotes. Human sGC is a heterodimeric hemoprotein, composed of a α-subunit (690 AA) and a heme-binding β-subunit (619 AA). Upon NO binding, sGC catalyzes the conversion of guanosine 5′-triphosphate (GTP) to 3′,5′-cyclic guanosine monophosphate (cGMP). cGMP is a second messenger and initiates the nitric oxide signaling, triggering vasodilatation, smooth muscle relaxation, platelet aggregation, and neuronal transmission etc. The breakthrough of the bottle neck problem for sGC-mediated NO singling was made in this study. The recombinant human sGC β1 subunit (HsGCβ619) and its truncated N-terminal fragments (HsGCβ195 and HsGCβ384) were efficiently expressed in Escherichia coli and purified successfully in quantities. The three proteins in different forms (ferric, ferrous, NO-bound, CO-bound) were characterized by UV–vis and EPR spectroscopy. The homology structure model of the human sGC heme domain was constructed, and the mechanism for NO binding to sGC was proposed. The EPR spectra showed a characteristic of five-coordinated heme-nitrosyl species with triplet hyperfine splitting of NO. The interaction between NO and sGC was investigated and the schematic mechanism was proposed. This study provides new insights into the structure and NO-binding of human sGC. Furthermore, the efficient expression system of E. coli will be beneficial to the further studies on structure and activation mechanism of human sGC.
Co-reporter:HuaLin Jiang;Lu Sun;ZhongXian Huang
Science China Chemistry 2010 Volume 53( Issue 10) pp:2200-2207
Publication Date(Web):2010 October
DOI:10.1007/s11426-010-4087-8
The cytochrome P450 (CYP) superfamily plays a key role in the oxidative metabolism of a wide range of exogenous chemicals. CYP2C8 is the principal enzyme responsible for the metabolism of the anti-cancer drug paclitaxel in the human liver, and carries out the oxidative metabolism of at least 5% of clinical drugs. Polymorphisms in CYP2C8 have been closely implicated in individualized medication. CYP2C8.3, a common polymorph of CYP2C8 with dual amino acid substitutions R139K and K399R, is found primarily in Caucasians. In this study, CYP2C8.3 and its wild type (WT) CYP2C8 were expressed in E. coli, and their purified proteins were characterized by UV-visible spectroscopy, mass spectrometry, and circular dichroism. Their thermal stability, substrate binding ability, and metabolic activity against paclitaxel were investigated. The electron transfer kinetics during paclitaxel metabolism by WT CYP2C8 or CYP2C8.3 was studied by stopped-flow kinetics. The results revealed that mutations in CYP2C8.3 did not greatly influence the heme active site or protein thermal stability and paclitaxel binding ability, but the metabolic activity against paclitaxel was significantly depressed to just 11% of that of WT CYP2C8. Electron transfer from CYP reductase to CYP2C8.3 was found to be significantly slower than that to WT CYP2C8 during catalysis, and this might be the main reason for the depressed metabolic activity. Since the polymorph CYP2C8.3 is defective in catalyzing substrates of CYP2C8 in vitro, it might be expected to have important clinical and pathophysiological consequences in homozygous individuals, and this study provides valuable information in this aspect.
Co-reporter:Lu Sun;Zhong-Hua Wang;Feng-Yun Ni;Xiang-Shi Tan;Zhong-Xian Huang
The Protein Journal 2010 Volume 29( Issue 1) pp:32-43
Publication Date(Web):2010 January
DOI:10.1007/s10930-009-9218-8
The biological function and stability of a cytochrome P450 (CYP) mainly depend on the subtle properties of the residues in the active site cavity, which are generally more divergent among proteins than other parts of the protein. As the most unique member of human CYP2C family, CYP2C8 has an isoleucine (Ile) 476 instead of phenylalanine (Phe) in substrate recognizing site 6 (SRS6). However, the role of Ile476 of CYP2C8 is still unknown. Therefore, six site-directed mutants of CYP2C8 were constructed to better define this. By UV–visible and circular dichroism spectroscopy studies, we studied for the first time the structural stability and all-trans-retinoic acid binding capability of the CYP2C8 variants. We found that the ferric CYP2C8 went through three states during thermal unfolding. Combined with substrate binding studies, our data revealed that residue 476 was involved in contact with substrate and was important for maintaining the thermal stability of CYP2C8.
Co-reporter:Tianlei Ying, Zhong-Hua Wang, Ying-Wu Lin, Jin Xie, Xiangshi Tan and Zhong-Xian Huang  
Chemical Communications 2009 (Issue 30) pp:4512-4514
Publication Date(Web):29 Jun 2009
DOI:10.1039/B904347K
We found that cyt c Y67H and Y67R variants represent a state which resembles the conformational intermediate state in cyt c with high peroxidase activity; and also the hydrogen bond network around Tyr67 is associated with the conformational transition of cyt c; these suggest that the hydrogen bond network around Tyr67 is essential in maintaining the cyt c functioning not only as an electron transfer protein but also probably as a trigger in apoptosis.
Co-reporter:Tianlei Ying;Fangfang Zhong;Jin Xie
Journal of Bioenergetics and Biomembranes 2009 Volume 41( Issue 3) pp:251-257
Publication Date(Web):2009 June
DOI:10.1007/s10863-009-9223-9
Conformational transitions in cytochrome c (cyt c) are being realized to be responsible for its multi-functions. Among a number of conformational transitions in cyt c, the alkaline transition has attracted much attention. The cDNA of human cyt c is cloned by RT-PCR and a high-effective expression system for human cyt c has been developed in this study. The equilibrium and kinetics of the alkaline transition of human cyt c have been systematically investigated for the first time, and compared with those of yeast and horse cyt c from an evolutionary perspective. The pKa value for the alkaline transition of human cyt c is apparently higher than that of yeast and horse. Kinetic studies suggest that it is increasingly difficult for the alkaline transition of cyt c from yeast, horse and human. Molecular modeling of human cyt c shows that the omega loop where the lysine residue is located apparently further away from heme in human cyt c than in yeast iso-1 and horse heart cyt c. These results regarding alkaline conformational transition provide valuable information for understanding the molecular basis for the biological multi-functions of cyt c.
Co-reporter:Xiaofei Zhu, Xiang Gu, Sixue Zhang, Yi Liu, Zhong-Xian Huang, Xiangshi Tan
Protein Expression and Purification (July 2011) Volume 78(Issue 1) pp:86-93
Publication Date(Web):1 July 2011
DOI:10.1016/j.pep.2011.02.006
The Wood-Ljungdahl pathway is responsible for acetyl-CoA biosynthesis and used as a major mean of generating energy for growth in some anaerobic microbes. Series of genes, from the anaerobic human pathogen Clostridium difficile, have been identified that show striking similarity to the genes involved in this pathway including methyltetrahydrofolate- and corrinoid-dependent methyltransferase. This methyltransferase plays a central role in this pathway that transfers the methyl group from methyltetrahydrofolate to a cob(I)amide center in the corrinoid iron–sulfur protein. In this study, we developed two efficient expression and purification methods for methyltransferase from C. difficile for the first time with two expression vectors MBPHT-mCherry2 and pETDuet-1, respectively. Using the latter vector, more than 50 mg MeTr was produced per liter Luria–Bertani broth media. The recombinant methyltransferase was well characterized by SDS–PAGE, gel filtration chromatography, enzyme assay and far-UV circular dichroism (CD). Furthermore, a highly effective approach was established for determining the methyl transfer activity of the methyltetrahydrofolate- and cobalamin-dependent methyltransferase using exogenous cobalamin as a substrate by stopped-flow method. These results will provide a solid basis for further study of the methyltransferase and the Wood-Ljungdahl pathway.
Co-reporter:Lei-Bin Wu, Hong Yuan, Shu-Qin Gao, Yong You, Chang-Ming Nie, Ge-Bo Wen, Ying-Wu Lin, Xiangshi Tan
Nitric Oxide (1 July 2016) Volume 57() pp:21-29
Publication Date(Web):1 July 2016
DOI:10.1016/j.niox.2016.04.007
•The nitrite reductase activity of myoglobin was regulated by redesign of its heme center.•A single distal histidine with a suitable position to the heme iron is crucial for nitrite reduction.•Creation of a channel to the heme center significantly enhanced the nitrite reductase activity.•X-ray crystal structures revealed unique substrate and product binding models in the heme center.•This study enriched the structure and nitrite reductase activity relationship of heme proteins.Heme proteins perform diverse functions in living systems, of which nitrite reductase (NIR) activity receives much attention recently. In this study, to better understand the structural elements responsible for the NIR activity, we used myoglobin (Mb) as a model heme protein and redesigned the heme active center, by introducing one or two distal histidines, and by creating a channel to the heme center with removal of the native distal His64 gate (His to Ala mutation). UV–Vis kinetic studies, combined with EPR studies, showed that a single distal histidine with a suitable position to the heme iron, i.e., His43, is crucial for nitrite (NO2−) to nitric oxide (NO) reduction. Moreover, creation of a water channel to the heme center significantly enhanced the NIR activity compared to the corresponding mutant without the channel. In addition, X-ray crystallographic studies of F43H/H64A Mb and its complexes with NO2− or NO revealed a unique hydrogen-bonding network in the heme active center, as well as unique substrate and product binding models, providing valuable structural information for the enhanced NIR activity. These findings enriched our understanding of the structure and NIR activity relationship of heme proteins. The approach of creating a channel in this study is also useful for rational design of other functional heme proteins.Download high-res image (300KB)Download full-size image
Co-reporter:Dao-Jing Yan, Hong Yuan, Wei Li, Yu Xiang, Bo He, Chang-Ming Nie, Ge-Bo Wen, Ying-Wu Lin and Xiangshi Tan
Dalton Transactions 2015 - vol. 44(Issue 43) pp:NaN18822-18822
Publication Date(Web):2015/09/30
DOI:10.1039/C5DT03040D
A heme–protein cross-link is a key post-translational modification (PTM) of heme proteins. Meanwhile, the structural and functional consequences of heme-protein cross-links are not fully understood, due to limited studies on a direct comparison of the same protein with and without the cross-link. A Tyr–heme cross-link with a C–O bond is a newly discovered PTM of heme proteins, and is spontaneously formed in F43Y myoglobin (Mb) between the Tyr hydroxyl group and the heme 4-vinyl group in vivo. In this study, we found that with an additional distal His29 introduced in the heme pocket, the double mutant L29H/F43Y Mb can form two distinct forms under different protein purification conditions, with and without a novel Tyr–heme cross-link. By solving the X-ray structures of both forms of L29H/F43Y Mb and performing spectroscopic studies, we made a direct structural and functional comparison in the same protein scaffold. It revealed that the Tyr–heme cross-link regulates the heme distal hydrogen-bonding network, and fine-tunes not only the spectroscopic and ligand binding properties, but also the protein reactivity. Moreover, the formation of the Tyr–heme cross-link in the double mutant L29H/F43Y Mb was investigated in vitro. This study addressed the key issue of how Tyr–heme cross-link fine-tunes the structure and functions of the heme protein, and provided a plausible mechanism for the formation of the newly discovered Tyr–heme cross-link.
Co-reporter:Tianlei Ying, Zhong-Hua Wang, Fangfang Zhong, Xiangshi Tan and Zhong-Xian Huang
Chemical Communications 2010 - vol. 46(Issue 20) pp:NaN3543-3543
Publication Date(Web):2010/04/09
DOI:10.1039/B926261J
We demonstrate for the first time that cytochrome c undergoes a distinct pathway in the alkaline conformational transition from its pro-apoptotic conformational transition, which may have important functional consequences in vivo.
Co-reporter:Jie Pan, Qiming Xu, Ying-Wu Lin, Fangfang Zhong and Xiangshi Tan
Chemical Communications 2013 - vol. 49(Issue 67) pp:NaN7456-7456
Publication Date(Web):2013/06/27
DOI:10.1039/C3CC43321H
Human soluble guanylate cyclase (hsGC), a NO sensor/NO receptor of a heterodimeric hemoprotein, plays a critical role in the NO-sGC-cGMP signaling pathway, and also reveals a novel nitrite reductase activity. This indicates that hsGC could activate itself by catalytic reduction of nitrite to NO instead of receiving NO from nitric oxide synthase (NOS), which provides valuable insight into the physiological function of the homodimeric hsGC.
Co-reporter:Wei Li, Hongfei Wang, Zheng Chen, Qing Ye, Yang Tian, Xin Xu, Zhongxian Huang, Pingwei Li and Xiangshi Tan
Chemical Communications 2014 - vol. 50(Issue 5) pp:NaN586-586
Publication Date(Web):2013/10/22
DOI:10.1039/C3CC47859A
The molecular mechanism of the metal specificity to superoxide dismutase from human pathogen C. difficile (SODcd) was investigated by X-ray crystallography, spectroscopy, SOD activity assay, electrochemistry, and DFT calculations, and the results indicate that the cognate metal characters tuned by the metal micro-environment dominate the metal specificity of the SODcd.
Co-reporter:Yi Liu, Qingli Wang, Yaozhu Wei, Ying-Wu Lin, Wei Li, Ji-Hu Su, Zhen Wang, Yang Tian, Zhong-Xian Huang and Xiangshi Tan
Chemical Communications 2013 - vol. 49(Issue 14) pp:NaN1454-1454
Publication Date(Web):2013/01/03
DOI:10.1039/C2CC38224E
Truncated acetyl-coenzyme A synthase (ACS) was successfully converted into functional nickel superoxide dismutase (Ni-SOD) by molecular design and the designed metalloproteins possess new spectroscopic, structural, and electrochemical characteristics required for catalyzing O2˙− disproportionation, and exhibit impressive Ni-SOD activity.
Co-reporter:Xiaoping Lv, Wei Li, Ying Luo, Dandan Wang, Cuiqing Zhu, Zhong-Xian Huang and Xiangshi Tan
Chemical Communications 2013 - vol. 49(Issue 52) pp:NaN5867-5867
Publication Date(Web):2013/05/09
DOI:10.1039/C3CC40779A
The differences between mouse mAβ1–42 and human hAβ1–42, explored using CD and fluorescence spectroscopy, transmission electron microscopy, ROS fluorescent assay, and neuronal cell viability, revealed that mAβ1–42 as a three-site mutant (R5G, Y10F and H13R) of hAβ1–42 altered the metal (copper and zinc) binding sites, reduced the proneness to form β-sheet structures and aggregated fibrils, alleviated the generation of ROS, and decreased the cytotoxicity, in contrast to hAβ1–42.
Co-reporter:Yi Liu, Xiaofei Zhu, Feng Wang, Tianlei Ying, Pingwei Li, Zhong-Xian Huang and Xiangshi Tan
Chemical Communications 2011 - vol. 47(Issue 4) pp:NaN1293-1293
Publication Date(Web):2010/11/22
DOI:10.1039/C0CC03587D
The A-cluster of acetyl-coenzyme A synthase consists of an [Fe4S4] cubane bridged to a [NipNid] centre via C509 cysteinate. The bridging cysteinate, which could be substituted by histidine imidazole, mediates “communication” between the [Fe4S4] cubane and the [NipNid] centre during the synthesis of acetyl-coenzyme A.
Co-reporter:Tianlei Ying, Zhong-Hua Wang, Ying-Wu Lin, Jin Xie, Xiangshi Tan and Zhong-Xian Huang
Chemical Communications 2009(Issue 30) pp:NaN4514-4514
Publication Date(Web):2009/06/29
DOI:10.1039/B904347K
We found that cyt c Y67H and Y67R variants represent a state which resembles the conformational intermediate state in cyt c with high peroxidase activity; and also the hydrogen bond network around Tyr67 is associated with the conformational transition of cyt c; these suggest that the hydrogen bond network around Tyr67 is essential in maintaining the cyt c functioning not only as an electron transfer protein but also probably as a trigger in apoptosis.
Dithionite
Iron dimer
5-Pyrimidinecarboxaldehyde, 4-amino-1,2-dihydro-2-oxo-
Guanosine5'-(tetrahydrogen triphosphate)
HYDROXOCOBALAMIN
TRISTEARIN