Matthew Soellner

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Name: Soellner, Matthew
Organization: University of Michigan, Ann Arbor , USA
Department:
Title: Assistant(PhD)
Co-reporter:Brian J. Larsen;Dr. Zhankui Sun;Eric Lachacz;Dr. Yaroslav Khomutnyk;Dr. Matthew B. Soellner;Dr. Pavel Nagorny
Chemistry - A European Journal 2015 Volume 21( Issue 52) pp:19159-19167
Publication Date(Web):
DOI:10.1002/chem.201503527

Abstract

The studies culminating in the total synthesis of the glutarimide-containing eukaryote translation elongation inhibitor lactimidomycin are described. The optimized synthetic route features a ZnII-mediated intramolecular Horner–Wadsworth–Emmons (HWE) reaction resulting in a highly stereoselective formation of the strained 12-membered macrolactone of lactimidomycin on a 423 mg scale. The presence of the E,Z-diene functionality was found to be key for effective macrocyclizations as a complete removal of these unsaturation units resulted in exclusive formation of the dimer rather than monocyclic enoate. The synthetic route features a late-stage installation of the glutarimide functionality via an asymmetric catalytic Mukaiyama aldol reaction, which allows for a quick generation of lactimidomycin homolog 55 containing two additional carbons in the glutarimide side chain. Similar to lactimidomycin, this analog was found to possess cytotoxicity against MDA-MB-231 breast cancer cells (GI50=1–3 μM) using in vitro 2D and 3D assays. Although lactimidomycin was found to be the most potent compound in terms of anticancer activity, 55 as well as truncated analogues 5052 lacking the glutarimide side-chain were found to be significantly less toxic against human mammary epithelial cells.

Co-reporter:Jessica N. Rabuck, Suk-Joon Hyung, Kristin S. Ko, Christel C. Fox, Matthew B. Soellner, and Brandon T. Ruotolo
Analytical Chemistry 2013 Volume 85(Issue 15) pp:6995
Publication Date(Web):July 11, 2013
DOI:10.1021/ac4012655
The discovery of activation state dependent kinase inhibitors, which bind specifically to the inactive conformation of the protein, is considered to be a promising pathway to improved cancer treatments. Identifying such inhibitors is challenging, however, because they can have Kd values similar to molecules known to inhibit kinase function by interacting with the active form. Further, while inhibitor induced changes within the kinase tertiary structure are significant, few technologies are able to correctly assign inhibitor binding modes in a high-throughput fashion based exclusively on protein–inhibitor complex formation and changes in local protein structure. We have developed a new assay, using ion mobility-mass spectrometry, capable of both rapidly detecting inhibitor binding and classifying the resultant kinase binding modes. Here, we demonstrate the ability of our approach to classify a broad set of kinase inhibitors, using micrograms of protein, without the need for protein modification or tagging.
Co-reporter:Steven C. Bremmer, Jing Chen, Anne J. McNeil and Matthew B. Soellner  
Chemical Communications 2012 vol. 48(Issue 44) pp:5482-5484
Publication Date(Web):30 Mar 2012
DOI:10.1039/C2CC31537H
A modular system for detecting protease activity via enzyme-triggered gel formation is described. Protease-specific recognition sequences are utilized to achieve enzyme specificity. Artificial blood clotting is demonstrated by activating endogenous thrombin to trigger gelation in fibrinogen-deficient blood plasma.
Co-reporter:Frank E. Kwarcinski, Christel C. Fox, Michael E. Steffey, and Matthew B. Soellner
ACS Chemical Biology 2012 Volume 7(Issue 11) pp:1910
Publication Date(Web):August 28, 2012
DOI:10.1021/cb300337u
We have developed the first irreversible inhibitors of wild-type c-Src kinase. We demonstrate that our irreversible inhibitors display improved potency and selectivity relative to that of their reversible counterparts. Our strategy involves modifying a promiscuous kinase inhibitor with an electrophile to generate covalent inhibitors of c-Src. We applied this methodology to two inhibitor scaffolds that exhibit increased cellular efficacy when rendered irreversible. In addition, we have demonstrated the utility of irreversible inhibitors in studying the conformation of an important loop in kinases that can control inhibitor selectivity and cause drug resistance. Together, we have developed a general and robust framework for generating selective irreversible inhibitors from reversible, promiscuous inhibitor scaffolds.
Co-reporter:Kristoffer R. Brandvold, Michael E. Steffey, Christel C. Fox, and Matthew B. Soellner
ACS Chemical Biology 2012 Volume 7(Issue 8) pp:1393
Publication Date(Web):May 17, 2012
DOI:10.1021/cb300172e
Generating highly selective probes to interrogate protein kinase function in biological studies remains a challenge, and new strategies are required. Herein, we describe the development of the first highly selective and cell-permeable inhibitor of c-Src, a key signaling kinase in cancer. Our strategy involves extension of traditional inhibitor design by appending functionality proposed to interact with the phosphate-binding loop of c-Src. Using our selective inhibitor, we demonstrate that selective inhibition is significantly more efficacious than pan-kinase inhibition in slowing the growth of cancer cells. We also show that inhibition of c-Abl kinase, an off-target of most c-Src inhibitors, promotes oncogenic cell growth.
Co-reporter:Steven C. Bremmer, Jing Chen, Anne J. McNeil and Matthew B. Soellner
Chemical Communications 2012 - vol. 48(Issue 44) pp:NaN5484-5484
Publication Date(Web):2012/03/30
DOI:10.1039/C2CC31537H
A modular system for detecting protease activity via enzyme-triggered gel formation is described. Protease-specific recognition sequences are utilized to achieve enzyme specificity. Artificial blood clotting is demonstrated by activating endogenous thrombin to trigger gelation in fibrinogen-deficient blood plasma.
1-Piperazinecarboxylic acid, 4-(1-oxo-4-pentyn-1-yl)-, 1,1-dimethylethyl ester
2-((6-Chloro-2-methylpyrimidin-4-yl)amino)thiazole-5-carboxylic acid
Benzamide, N-(3-aminophenyl)-3-(trifluoromethyl)-
Benzamide, N-(4-methyl-3-nitrophenyl)-3-(trifluoromethyl)-
Boron,[1-[3-[5-[(3,5-dimethyl-2H-pyrrol-2-ylidene-kN)methyl]-1H-pyrrol-2-yl-kN]-1-oxopropoxy]-2,5-pyrrolidinedionato]difluoro-,(T-4)-
Benzene,2-methyl-1-nitro-4-phenoxy-
N-(3-AMINO-4-METHYLPHENYL)-3-(TRIFLUOROMETHYL)BENZAMIDE