While three-dimensional (3D) configurable hierarchical nanostructures have wide ranging applications in electronics, biology, and optics, finding scalable approaches remains a challenge. We report a robust and general strategy called multiple-patterning nanosphere lithography (MP-NSL) for the fabrication of periodic 3D hierarchical nanostructures in a highly scalable and tunable manner. This nanofabrication technique exploits the selected and repeated etching of polymer nanospheres that serve as resists and that can be shaped in parallel for each processing step. The application of MP-NSL enables the fabrication of periodic, vertically aligned Si nanotubes at the wafer scale with nanometer-scale control in three dimensions including outer/inner diameters, heights/hole-depths, and pitches. The MP-NSL method was utilized to construct 3D periodic hierarchical hybrid nanostructures such as multilevel solid/hollow nanotowers where the height and diameter of each level of each structure can be configured precisely as well as 3D concentric plasmonic nanodisk/nanorings with tunable optical properties on a variety of substrates.Keywords: 3D lithography; hierarchical nanostructure; multiple patterning; nanofabrication; nanosphere lithography; nanostructure; nanotube;

Self-assembled monolayers (SAMs) of carborane isomers with different dipole moments passivate germanium to modulate surface work function while maintaining chemical environment and surface energy. To identify head groups capable of monolayer formation on germanium surfaces, we studied thiol-, hydroxyl-, and carboxyl-terminated carboranes. These films were successfully formed with carboxylic acid head groups instead of the archetypal thiol, suggesting that the carborane cluster significantly affects headgroup reactivity. Film characterization included X-ray and ultraviolet photoelectron spectroscopies as well as contact angle goniometry. Using these carboranes, the germanium surface work function was tailored over 0.4 eV without significant changes to wetting properties.Keywords: carborane; germanium; ligand; self-assembled monolayers; ultrathin film; work function;

We designed and fabricated large arrays of polymer pens having sub-20 nm tips to perform chemical lift-off lithography (CLL). As such, we developed a hybrid patterning strategy called polymer-pen chemical lift-off lithography (PPCLL). We demonstrated PPCLL patterning using pyramidal and v-shaped polymer-pen arrays. Associated simulations revealed a nanometer-scale quadratic relationship between contact line widths of the polymer pens and two other variables: polymer-pen base line widths and vertical compression distances. We devised a stamp support system consisting of interspersed arrays of flat-tipped polymer pens that are taller than all other sharp-tipped polymer pens. These supports partially or fully offset stamp weights thereby also serving as a leveling system. We investigated a series of v-shaped polymer pens with known height differences to control relative vertical positions of each polymer pen precisely at the sub-20 nm scale mimicking a high-precision scanning stage. In doing so, we obtained linear-array patterns of alkanethiols with sub-50 nm to sub-500 nm line widths and minimum sub-20 nm line width tunable increments. The CLL pattern line widths were in agreement with those predicted by simulations. Our results suggest that through informed design of a stamp support system and tuning of polymer-pen base widths, throughput can be increased by eliminating the need for a scanning stage system in PPCLL without sacrificing precision. To demonstrate functional microarrays patterned by PPCLL, we inserted probe DNA into PPCLL patterns and observed hybridization by complementary target sequences.Keywords: alkanethiols; Chemical patterning; DNA hybridization; microcontact printing; nanolithography; soft lithography;

Understanding spin-selective interactions between electrons and chiral molecules is critical to elucidating the significance of electron spin in biological processes and to assessing the potential of chiral assemblies for organic spintronics applications. Here, we use fluorescence microscopy to visualize the effects of spin-dependent charge transport in self-assembled monolayers of double-stranded DNA on ferromagnetic substrates. Patterned DNA arrays provide background regions for every measurement to enable quantification of substrate magnetization-dependent fluorescence due to the chiral-induced spin selectivity effect. Fluorescence quenching of photoexcited dye molecules bound within DNA duplexes is dependent upon the rate of charge separation/recombination upon photoexcitation and the efficiency of DNA-mediated charge transfer to the surface. The latter process is modulated using an external magnetic field to switch the magnetization orientation of the underlying ferromagnetic substrates. We discuss our results in the context of the current literature on the chiral-induced spin selectivity effect across various systems.Keywords: chemical lift-off lithography; chiral-induced spin selectivity effect; DNA-mediated charge transfer; fluorescence microscopy; perylenediimide; photospintronics;

We report a facile, high-throughput soft lithography process that utilizes nanoscale channels formed naturally at the edges of microscale relief features on soft, elastomeric stamps. Upon contact with self-assembled monolayer (SAM) functionalized substrates, the roof of the stamp collapses, resulting in the selective removal of SAM molecules via a chemical lift-off process. With this technique, which we call self-collapse lithography (SCL), sub-30 nm patterns were achieved readily using masters with microscale features prepared by conventional photolithography. The feature sizes of the chemical patterns can be varied continuously from ∼2 μm to below 30 nm by decreasing stamp relief heights from 1 μm to 50 nm. Likewise, for fixed relief heights, reducing the stamp Young’s modulus from ∼2.0 to ∼0.8 MPa resulted in shrinking the features of resulting patterns from ∼400 to ∼100 nm. The self-collapse mechanism was studied using finite element simulation methods to model the competition between adhesion and restoring stresses during patterning. These results correlate well with the experimental data and reveal the relationship between the line widths, channel heights, and Young’s moduli of the stamps. In addition, SCL was applied to pattern two-dimensional arrays of circles and squares. These chemical patterns served as resists during etching processes to transfer patterns to the underlying materials (e.g., gold nanostructures). This work provides new insights into the natural propensity of elastomeric stamps to self-collapse and demonstrates a means of exploiting this behavior to achieve patterning via nanoscale chemical lift-off lithography.Keywords: Chemical lift-off lithography; nanolithography; self-collapse; soft lithography;

The high theoretical energy density of alloyed lithium and germanium (Li15Ge4), 1384 mAh/g, makes germanium a promising anode material for lithium-ion batteries. However, common alloy anode architectures suffer from long-term instability upon repetitive charge–discharge cycles that arise from stress-induced degradation upon lithiation (volume expansion >300%). Here, we explore the use of the two-dimensional nanosheet structure of germanane to mitigate stress from high volume expansion and present a facile method for producing stable single-to-multisheet dispersions of pure germanane. Purity and degree of exfoliation were assessed with scanning electron microscopy, transmission electron microscopy, and Raman spectroscopy. We measured representative germanane battery electrodes to have a reversible Li-ion capacity of 1108 mAh/g when cycled between 0.1 and 2 V vs Li/Li+. These results indicate germanane anodes are capable of near-theoretical-maximum energy storage, perform well at high cycling rates, and can maintain capacity over 100 cycles.Keywords: alloy anode; battery anode; germanane; germanium nanosheets; lithium ion;

β-Amyloid aggregates in the brain play critical roles in Alzheimer’s disease, a chronic neurodegenerative condition. Amyloid-associated metal ions, particularly zinc and copper ions, have been implicated in disease pathogenesis. Despite the importance of such ions, the binding sites on the β-amyloid peptide remain poorly understood. In this study, we use scanning tunneling microscopy, circular dichroism, and surface-enhanced Raman spectroscopy to probe the interactions between Cu2+ ions and a key β-amyloid peptide fragment, consisting of the first 16 amino acids, and define the copper–peptide binding site. We observe that in the presence of Cu2+, this peptide fragment forms β-sheets, not seen without the metal ion. By imaging with scanning tunneling microscopy, we are able to identify the binding site, which involves two histidine residues, His13 and His14. We conclude that the binding of copper to these residues creates an interstrand histidine brace, which enables the formation of β-sheets.Keywords: Alzheimer’s disease; binding site; histidine brace; scanning tunneling microscopy; β-amyloid; β-sheet;

Detailed understanding and control of the intermolecular forces that govern molecular assembly are necessary to engineer structure and function at the nanoscale. Liquid crystal (LC) assembly is exceptionally sensitive to surface properties, capable of transducing nanoscale intermolecular interactions into a macroscopic optical readout. Self-assembled monolayers (SAMs) modify surface interactions and are known to influence LC alignment. Here, we exploit the different dipole magnitudes and orientations of carboranethiol and -dithiol positional isomers to deconvolve the influence of SAM-LC dipolar coupling from variations in molecular geometry, tilt, and order. Director orientations and anchoring energies are measured for LC cells employing various carboranethiol and -dithiol isomer alignment layers. The normal component of the molecular dipole in the SAM, toward or away from the underlying substrate, was found to determine the in-plane LC director orientation relative to the anisotropy axis of the surface. By using LC alignment as a probe of interaction strength, we elucidate the role of dipolar coupling of molecular monolayers to their environment in determining molecular orientations. We apply this understanding to advance the engineering of molecular interactions at the nanoscale.

Cyanide monolayers on Au{111} restructure from a hexagonal close-packed lattice to a mixed-orientation “ribbon” structure through thermal annealing. The new surface structure loses most of the observed surface features characterizing the initial as-adsorbed system with “ribbon” domain boundaries isolating rotationally offset surface regions where the orientation is guided by the underlying gold lattice. A blue shift to higher frequencies of the CN vibration to 2235 cm–1 with respect to the as-adsorbed CN/Au{111} vibration at 2146 cm–1 is observed. In addition, a new low-frequency mode is observed at 145 cm–1, suggesting a chemical environment change similar to gold–cyanide crystallization. We discuss this new structure with respect to a mixed cyanide/isocyanide monolayer and propose a bonding scheme consisting of Au-CN and Au-NC bound molecules that are oriented normal to the Au{111} surface.

The microbiome presents great opportunities for understanding and improving the world around us and elucidating the interactions that compose it. The microbiome also poses tremendous challenges for mapping and manipulating the entangled networks of interactions among myriad diverse organisms. Here, we describe the opportunities, technical needs, and potential approaches to address these challenges, based on recent and upcoming advances in measurement and control at the nanoscale and beyond. These technical needs will provide the basis for advancing the largely descriptive studies of the microbiome to the theoretical and mechanistic understandings that will underpin the discipline of microbiome engineering. We anticipate that the new tools and methods developed will also be more broadly useful in environmental monitoring, medicine, forensics, and other areas.

A vibronic resonance between Au{111} surface states and adsorbed CN vibrations has been predicted, which we target for study. We have formed stable monolayers of cyanide on Au{111} and observe a hexagonal close-packed lattice with a nearest neighbor distance of 3.8 ± 0.5 Å. Cyanide orients normal to the surface attached via a Au–C bond. We show that the substrate–molecule coupling is particularly strong, leading to ultrafast electron transfer from the cyanide molecules to the Au{111} substrate as measured by resonant Auger spectroscopy using the core–hole clock method. The CN/Au{111} system is a simple example of a strongly interacting adsorbate–substrate system and will be the subject of a number of further studies, as discussed.

We map buried hydrogen-bonding networks within self-assembled monolayers of 3-mercapto-N-nonylpropionamide on Au{111}. The contributing interactions include the buried S–Au bonds at the substrate surface and the buried plane of linear networks of hydrogen bonds. Both are simultaneously mapped with submolecular resolution, in addition to the exposed interface, to determine the orientations of molecular segments and directional bonding. Two-dimensional mode-decomposition techniques are used to elucidate the directionality of these networks. We find that amide-based hydrogen bonds cross molecular domain boundaries and areas of local disorder.Keywords: disorder; hydrogen bonding; image analysis; scanning tunneling microscopy; segmentation; self-assembled monolayers; self-assembly; spectroscopic imaging; two-dimensional variational mode decomposition

Nanoscience is one of the fastest growing and most impactful fields in global scientific research. In order to support the continued development of nanoscience and nanotechnology, it is important that nanoscience education be a top priority to accelerate research excellence. In this Nano Focus, we discuss current approaches to nanoscience training and propose a learning design framework to promote the next generation of nanoscientists. Prominent among these are the abilities to communicate and to work across and between conventional disciplines. While the United States has played leading roles in initiating these developments, the global landscape of nanoscience calls for worldwide attention to this educational need. Recent developments in emerging nanoscience nations are also discussed. Photo credit: Jae Hyeon Park.

Nanoscience and nanotechnology are poised to contribute to a wide range of fields, from health and medicine to electronics, energy, security, and more. These contributions come both directly in the form of new materials, interfaces, tools, and even properties as well as indirectly by connecting fields together. We celebrate how far we have come, and here, we look at what is to come over the next decade that will leverage the strong and growing base that we have built in nanoscience and nanotechnology.

The p-carborane cluster analogue of p-mercaptobenzoic acid, 1-HS-12-COOH-1,12-C2B10H10, has been synthesized and characterized using nuclear magnetic resonance spectroscopy, single-crystal X-ray diffraction analysis, quantum-chemical calculations, and scanning tunneling microscopy. The single-crystal structure and selected packing aspects are discussed and presented in comparison with the two-dimensional periodic arrangements. Scanning tunneling micrographs, recorded under ambient conditions, are used to compare pure monolayers of 1-HS-1,12-C2B10H11 to coadsorbed monolayers of both the parental precursor and carboxyl-functionalized p-carboranethiolate on Au{111}. Monolayers of both constituents are further characterized by X-ray photoelectron spectroscopy, which shows good agreement between the stoichiometry of each pure monolayer and the nominal stoichiometries of the respective molecules. Results indicate that most of the molecules of both derivatives adsorb as thiolates but that a small fraction of each adsorbs as thiols, without complete SH bond scission, and consequently are labile relative to desorption. Wetting-angle measurements confirm the hydrophilic character of monolayers containing the carboxylic acid constituents. Mixed self-assembled monolayers with functionalized constituents of high axial symmetry provide a convenient basis for grafting two- and three-dimensional structures.

Carboranethiol molecules self-assemble into upright molecular monolayers on Au{111} with aligned dipoles in two dimensions. The positions and offsets of each molecule’s geometric apex and local dipole moment are measured and correlated with sub-Ångström precision. Juxtaposing simultaneously acquired images, we observe monodirectional offsets between the molecular apexes and dipole extrema. We determine dipole orientations using efficient new image analysis techniques and find aligned dipoles to be highly defect tolerant, crossing molecular domain boundaries and substrate step edges. The alignment observed, consistent with Monte Carlo simulations, forms through favorable intermolecular dipole–dipole interactions.Keywords: carborane; defect tolerant; dipole alignment; ferroelectric; nanoscience; scanning tunneling microscopy; self-assembled monolayer; self-assembly; two-dimensional;

We demonstrate the use of “holey” graphene as a mask against molecular adsorption. Prepared porous graphene is transferred onto a Au{111} substrate, annealed, and then exposed to dilute solutions of 1-adamantanethiol. In the pores of the graphene lattice, we find islands of organized, self-assembled molecules. The bare Au in the pores can be regenerated by postdeposition annealing, and new molecules can be self-assembled in the exposed Au region. Graphene can serve as a robust, patternable mask against the deposition of self-assembled monolayers.Keywords: chemical patterning; graphene; mask; nanoscience; scanning tunneling microscopy; self-assembly;

Nucleotide arrays require controlled surface densities and minimal nucleotide–substrate interactions to enable highly specific and efficient recognition by corresponding targets. We investigated chemical lift-off lithography with hydroxyl- and oligo(ethylene glycol)-terminated alkanethiol self-assembled monolayers as a means to produce substrates optimized for tethered DNA insertion into post-lift-off regions. Residual alkanethiols in the patterned regions after lift-off lithography enabled the formation of patterned DNA monolayers that favored hybridization with target DNA. Nucleotide densities were tunable by altering surface chemistries and alkanethiol ratios prior to lift-off. Lithography-induced conformational changes in oligo(ethylene glycol)-terminated monolayers hindered nucleotide insertion but could be used to advantage via mixed monolayers or double-lift-off lithography. Compared to thiolated DNA self-assembly alone or with alkanethiol backfilling, preparation of functional nucleotide arrays by chemical lift-off lithography enables superior hybridization efficiency and tunability.Keywords: alkanethiol patterning; chemical lift-off lithography; DNA hybridization; nucleotide arrays; self-assembled monolayers;

As our understanding and control of intra- and intermolecular interactions evolve, ever more complex molecular systems are synthesized and assembled that are capable of performing work or completing sophisticated tasks at the molecular scale. Commonly referred to as molecular machines, these dynamic systems comprise an astonishingly diverse class of motifs and are designed to respond to a plethora of actuation stimuli. In this Review, we outline the conditions that distinguish simple switches and rotors from machines and draw from a variety of fields to highlight some of the most exciting recent examples of opportunities for driven molecular mechanics. Emphasis is placed on the need for controllable and hierarchical assembly of these molecular components to display measurable effects at the micro-, meso-, and macroscales. As in Nature, this strategy will lead to dramatic amplification of the work performed via the collective action of many machines organized in linear chains, on functionalized surfaces, or in three-dimensional assemblies.Keywords: amphidynamic crystals; azobenzene; DNA nanotechnology; hierarchical assembly; mechanically interlocked molecules; molecular machines; molecular switches; photomechanical crystals; rotors and motors; thermo/photosalient crystals;

We demonstrate straightforward fabrication of highly sensitive biosensor arrays based on field-effect transistors, using an efficient high-throughput, large-area patterning process. Chemical lift-off lithography is used to construct field-effect transistor arrays with high spatial precision suitable for the fabrication of both micrometer- and nanometer-scale devices. Sol–gel processing is used to deposit ultrathin (∼4 nm) In2O3 films as semiconducting channel layers. The aqueous sol–gel process produces uniform In2O3 coatings with thicknesses of a few nanometers over large areas through simple spin-coating, and only low-temperature thermal annealing of the coatings is required. The ultrathin In2O3 enables construction of highly sensitive and selective biosensors through immobilization of specific aptamers to the channel surface; the ability to detect subnanomolar concentrations of dopamine is demonstrated.Keywords: aptamer; biosensor; chemical lift-off lithography; dopamine; field-effect transistor; metal-oxide semiconductor; nanofabrication; nanotechnology; neurotransmitter; sensor; sol−gel chemistry;

We employ mixed self-assembled monolayers of carboranethiols to alter the work function of gold and silver systematically. We use isomers of symmetric carboranethiol cage molecules to vary molecular dipole moments and directions, which enable work function tunability over a wide range with minimal alterations in surface energy. Mixed monolayers of carboranethiol isomers provide an ideal platform for the study and fabrication of solution-processed organic field-effect transistors; improved device performance is demonstrated by interface engineering.

When alkanethiolate self-assembled monolayers on Au{111} are exchanged with alkaneselenols from solution, replacement of thiolates by selenols is rapid and complete, and is well described by perimeter-dependent island growth kinetics. The monolayer structures change as selenolate coverage increases, from being epitaxial and consistent with the initial thiolate structure to being characteristic of selenolate monolayer structures. At room temperature and at positive sample bias in scanning tunneling microscopy, the selenolate–gold attachment is labile, and molecules exchange positions with neighboring thiolates. The scanning tunneling microscope probe can be used to induce these place-exchange reactions.

Self-assembled monolayers are a unique class of nanostructured materials, with properties determined by their molecular lattice structures, as well as the interfaces with their substrates and environments. As with other nanostructured materials, defects and dimensionality play important roles in the physical, chemical, and biological properties of the monolayers. In this review, we discuss monolayer structures ranging from surfaces (two-dimensional) down to single molecules (zero-dimensional), with a focus on applications of each type of structure, and on techniques that enable characterization of monolayer physical properties down to the single-molecule scale.

Cluster-assembled materials combine the nanoscale size and composition-dependentproperties of clusters, which have highly tunable magnetic and electronic properties useful for a great variety of potential technologies. To understand the emergent properties as clusters are assembled into hierarchical materials, we have synthesized 23 cluster-assembled materials composed of As73–-based motifs and different countercations and measured their band gap energies. We found that the band gap energy varies from 1.09 to 2.21 eV. In addition, we have carried out first principles electronic structure studies to identify the physical mechanisms that enable control of the band gap edges of the cluster assemblies.The choice of counterion has a profound effect on the band gap energy in ionic clusterassemblies. The top of the valence band is localized on the arsenic cluster, while the conduction band edge is located on the alkali metal counterions. Changing the counterion changes the position of the conduction band edge, enabling control of the band gap energy. We can also vary the architecture of the ionic solid by incorporating cryptates as counterions, which provide charge but are separated from the clusters by bulky ligands. Higher dimensionality typically decreases the band gap energy through band broadening; however band gap energies increased upon moving from zero-dimensional (0D) to two-dimensional (2D) assemblies. This is because internal electric fields generated by the counterion preferentially stabilize the adjacent lone pair orbitals that mark the top of the valence band. Thus, the choice of the counterion can control the position of the conduction band edge of ionic cluster assemblies. In addition, the dimensionality of the solid via internal electric fields can control the valence band edge.Through covalently linking arsenic clusters into composite building blocks, we have also been able to tune the band gap energy. We used a theoretical description based on cluster orbital theory to provide microscopic understanding of the electronic character of the composite building blocks and the observed variations in the band gap energy. Also, we have shown how dimeric linkers can be used to control the band gap energy. Lastly, we also investigated the effects of charge transfer complexes of M(CO)3 on the band gap energy.

Single-molecule measurements of complex biological structures such as proteins are an attractive route for determining structures of the large number of important biomolecules that have proved refractory to analysis through standard techniques such as X-ray crystallography and nuclear magnetic resonance. We use a custom-built low-current scanning tunneling microscope to image peptide structures at the single-molecule scale in a model peptide that forms β sheets, a structural motif common in protein misfolding diseases. We successfully differentiate between histidine and alanine amino acid residues, and further differentiate side chain orientations in individual histidine residues, by correlating features in scanning tunneling microscope images with those in energy-optimized models. Beta sheets containing histidine residues are used as a model system due to the role histidine plays in transition metal binding associated with amyloid oligomerization in Alzheimer’s and other diseases. Such measurements are a first step toward analyzing peptide and protein structures at the single-molecule level.

We address the importance of the dynamic molecular ink concentration at a polymer stamp/substrate interface during microcontact displacement or insertion printing. We demonstrate that by controlling molecular flux, we can influence both the molecular-scale order and the rate of molecular exchange of self-assembled monolayers (SAMs) on gold surfaces. Surface depletion of molecular ink at a polymer stamp/substrate interface is driven predominantly by diffusion into the stamp interior; depletion occurs briefly at the substrate by SAM formation, but diffusion of molecules into the bulk of the stamp dominates over practical experimental time scales. As contact time is increased, the interface concentration varies significantly due to diffusion, affecting the quality and coverage of printed films. Controlling interfacial concentration improves printed film reproducibility and the fractional coverage of multicomponent films can be controlled to within a few percent. We first briefly review the important aspects of molecular ink diffusion at a stamp interface and how it relates to experimental duration. We then describe two examples that illustrate control over ink transfer during experiments: the role of contact time on monolayer reproducibility and molecular order, and the fine control of fractional monolayer coverage for the displacement printing of 1-adamantanethiolate SAMs by 1-dodecanethiol.Keywords: infrared reflection absorption spectroscopy; microcontact printing; microdisplacement printing; nanoscale patterning; scanning electron microscopy; self-assembled monolayers;

Neuroscience is at a crossroads. Great effort is being invested into deciphering specific neural interactions and circuits. At the same time, there exist few general theories or principles that explain brain function. We attribute this disparity, in part, to limitations in current methodologies. Traditional neurophysiological approaches record the activities of one neuron or a few neurons at a time. Neurochemical approaches focus on single neurotransmitters. Yet, there is an increasing realization that neural circuits operate at emergent levels, where the interactions between hundreds or thousands of neurons, utilizing multiple chemical transmitters, generate functional states. Brains function at the nanoscale, so tools to study brains must ultimately operate at this scale, as well. Nanoscience and nanotechnology are poised to provide a rich toolkit of novel methods to explore brain function by enabling simultaneous measurement and manipulation of activity of thousands or even millions of neurons. We and others refer to this goal as the Brain Activity Mapping Project. In this Nano Focus, we discuss how recent developments in nanoscale analysis tools and in the design and synthesis of nanomaterials have generated optical, electrical, and chemical methods that can readily be adapted for use in neuroscience. These approaches represent exciting areas of technical development and research. Moreover, unique opportunities exist for nanoscientists, nanotechnologists, and other physical scientists and engineers to contribute to tackling the challenging problems involved in understanding the fundamentals of brain function.

Precise self-assembled monolayer chemistries and microfluidic technology are combined to create small-molecule biorecognition arrays. Small-molecule neurotransmitters or precursors are spatially encoded on monolayer-modified substrates. This platform enables multiplexed screening of G-protein-coupled receptors (GPCRs) from complex media via protein–ligand interactions. Preserving access to all epitopes of small molecules is critical for GPCR recognition. The ability to address multiple small molecules on solid substrates and to sort protein mixtures based on specific affinities is a critical step in creating biochips for proteomic applications.

Graphene has attracted great interest for its superior physical, chemical, mechanical, and electrical properties that enable a wide range of applications from electronics to nanoelectromechanical systems. Functionalization is among the significant vectors that drive graphene towards technological applications. While the physical properties of graphene have been at the center of attention, we still lack the knowledge framework for targeted graphene functionalization. In this critical review, we describe some of the important chemical and physical processes for graphene functionalization. We also identify six major challenges in graphene research and give perspectives and practical strategies for both fundamental studies and applications of graphene (315 references).

We identify and control the photoreaction paths of self-assembled monolayers (SAMs) of thiolate-linked anthracene phenylethynyl molecules on Au substrate surfaces, and study the effects of nanoscale morphology of substrates on regioselective photoreactions. Two types of morphologies, atomically flat and curved, are produced on Au surfaces by controlling substrate structure and metal deposition. We employ surface-enhanced Raman spectroscopy (SERS), combined with Raman mode analyses using density functional theory, to identify the different photoreaction paths and to track the photoreaction kinetics and efficiencies of molecules in monolayers. The SAMs on curved surfaces exhibit dramatically lower regioselective photoreaction kinetics and efficiencies than those on atomically flat surfaces. This result is attributed to the increased intermolecular distances and variable orientations on the curved surfaces. Better understanding of the morphological effects of substrates will enable control of nanoparticle functionalization in ligand exchange in targeted delivery of therapeutics and theranostics and in catalysis.

Carboxylatopillar[5]arene (CP[5]A), a new water-soluble macrocyclic synthetic receptor, has been employed as a stabilizing ligand for in situ preparation of gold nanoparticles (AuNPs) to gain new insights into supramolecular host–AuNP interactions. CP[5]A-modified AuNPs with good dispersion and narrow size distributions (3.1 ± 0.5 nm) were successfully produced in aqueous solution, suggesting a green synthetic pathway for the application of AuNPs in biological systems. Supramolecular self-assembly of CP[5]A-modified AuNPs mediated by suitable guest molecules was also investigated, indicating that the new hybrid material is useful for sensing and detection of the herbicide paraquat.

We review electronic substrate-mediated interactions (SMIs), which stem from adsorption-induced perturbations of substrate surface electronic states. We examine the experimental progress that exploits electronic SMIs as a means to control the order and structures of surface self-assemblies, with emphasis on scanning tunneling microscopy (STM), a technique that is sensitive to both the spatial and the energetic distributions of surface electronic states. Furthermore, we examine the opportunities and challenges associated with the use of electronic SMIs to control the bulk properties of low-dimensional materials.Highlights► Substrate-mediated interactions produce long-range communication between adsorbates. ► Substrate-mediated interactions affect surface structure, dynamics, and chemistry. ► Substrate-mediated interactions can be exploited to build precise structures. ► STM maps energy-dependent substrate-mediated interactions with atomic resolution.

We have synthesized a series of cluster assembled materials in which the building blocks are As73− clusters linked by group 12 metals, Zn, Cd and Hg, to investigate the effect of covalent linkers on the band gap energy. The synthesized assemblies include zero dimensional assemblies of [Zn(As7)2]4−, [Cd(As7)2]4−, [Hg2(As7)2]4−, and [HgAsAs14]3− in which the clusters are separated by cryptated counterions, and assemblies in which [Zn(As7)2]4−, [Cd(As7)2]4− are linked by free alkali atoms into unusual three-dimensional structures. These covalently linked cluster-assembled materials have been characterized by elemental analysis, EDX and single-crystal X-ray diffraction. The crystal structure analysis revealed that in the case of Zn and Cd, the two As73− units are linked by the metal ion, while in the case of Hg, two As73− units are linked by either Hg–Hg or Hg–As dimers. Optical measurements indicate that the band gap energy ranges from 1.62 eV to 2.21 eV. A theoretical description based on cluster orbital theory is used to provide a microscopic understanding of the electronic character of the composite building blocks and the observed variations in the band gap energy.

The dimeric Zintl ion [Hg2(As7)2]4− has been synthesized with high crystalline yield from the reaction of an ethylendiamine solution of the intermetallic Zintl phase K3As7 with diphenyl mercury. Single crystal X-ray diffraction of [K(2,2,2-crypt)]4[Hg2As14], 1 (2,2,2-crypt = 4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]-hexacosane), reveals that the cluster anion exhibits a Hg–Hg bond and the compound has been further characterized using Raman spectroscopy, cyclic voltammetry and its band gap energy was measured. Theoretical studies provide a microscopic understanding of the bonding in this unusual compound.

Cluster-assembled materials composed of [Pd2As14]4– polyvalent anions, where a palladium dimer links two As7 clusters, have been synthesized in zero- and two-dimensional architectures. Their dimensionality was controlled through the selection of the counterions, and their structures were characterized by single-crystal X-ray diffraction. Reflectance spectroscopy measurements indicate that the zero- and two-dimensional assemblies have band gaps of 1.35 and 1.15 eV, respectively, and are smaller than the 1.80 eV gap of the As73– cluster. Theoretical investigations reveal that the frontier orbitals of the cluster building blocks are located primarily on the Pd dimer. Further, these orbitals are embedded inside the intrinsic band gap of the As73– clusters, reducing the band gap energy with edge states that are localized on the Pd sites. It is suggested that such a periodic array of narrow localized states may lead to interesting transport and optical properties as the carriers may become localized at these sites.

Visibly transparent photovoltaic devices can open photovoltaic applications in many areas, such as building-integrated photovoltaics or integrated photovoltaic chargers for portable electronics. We demonstrate high-performance, visibly transparent polymer solar cells fabricated via solution processing. The photoactive layer of these visibly transparent polymer solar cells harvests solar energy from the near-infrared region while being less sensitive to visible photons. The top transparent electrode employs a highly transparent silver nanowire–metal oxide composite conducting film, which is coated through mild solution processes. With this combination, we have achieved 4% power-conversion efficiency for solution-processed and visibly transparent polymer solar cells. The optimized devices have a maximum transparency of 66% at 550 nm.Keywords: polymer solar cell; silver nanowire; solution process; transparent electrode; transparent solar cell

We establish the role of tether conductivity on the photoisomerization of azobenzene-functionalized molecules assembled as isolated single molecules in well-defined decanethiolate self-assembled monolayer matrices on Au{111}. We designed the molecules so as to tune the conductivity of the tethers that separate the functional moiety from the underlying Au substrate. By employing surface-enhanced Raman spectroscopy, time-course measurements of surfaces assembled with azobenzene functionalized with different tether conductivities were independently studied under constant UV light illumination. The decay constants from the analyses reveal that photoisomerization on the Au{111} surface is reduced when the conductivity of the tether is increased. Experimental results are compared with density functional theory calculations performed on single molecules attached to Au clusters.Keywords: azobenzene; nanohole array; quenching; surface plasmons; surface-enhanced Raman spectroscopy; tether conductivity;

We have designed an angularly tunable plasmonic system that consists of Au nanodisks in combination with molecules of photoswitchable resonance, spiropyran, to gain new insights into weak exciton–plasmon couplings. In the weak exciton–plasmon coupling regime, switching molecular resonance can induce localized surface plasmon resonance (LSPR) peak shifts due to the change in the refractive index of the molecular materials. On the basis of the angle-resolved spectroscopic study of the nanodisk–spiropyran system both with and without UV irradiation, we reveal an unusual “zigzag” curve for the LSPR peak shifts (due to the photoswitching of the molecular resonance) as a function of the original LSPR peak wavelength. A further theoretical analysis attributes the “zigzag” curve to two significant competing effects that depend on the incident angle of the probe light: plasmon-enhanced molecular resonance absorption and LSPR sensitivity to the surroundings’ refractive index.

We apply in situ surface-enhanced Raman spectroscopy (SERS) to probe the reversible photoswitching of azobenzene-functionalized molecules inserted in self-assembled monolayers that serve as controlled nanoscale environments. Nanohole arrays are fabricated in Au thin films to enable SERS measurements associated with excitation of surface plasmons. A series of SERS spectra are recorded for azobenzene upon cycling exposure to UV (365 nm) and blue (450 nm) light. Experimental spectra match theoretical calculations. On the basis of both the simulations and the experimental data analysis, SERS provides quantitative information on the reversible photoswitching of azobenzene in controlled nanoscale environments.

We have developed a facile method for the construction of liquid-phase eutectic gallium–indium (EGaIn) alloy nanoparticles. Particle formation is directed by molecular self-assembly and assisted by sonication. As the bulk liquid alloy is ultrasonically dispersed, fast thiolate self-assembly at the EGaIn interface protects the material against oxidation. The choice of self-assembled monolayer ligand directs the ultimate size reduction in the material; strongly interacting molecules induce surface strain and assist particle cleavage to the nanoscale. Transmission electron microscopy images and diffraction analyses reveal that the nanoscale particles are in an amorphous or liquid phase, with no observed faceting. The particles exhibit strong absorption in the ultraviolet (∼200 nm), consistent with the gallium surface plasmon resonance, but dependent on the nature of the particle ligand shell.

We report a complex, dynamic double lattice for 1-adamantaneselenolate monolayers on Au{111}. Two lattices coexist, revealing two different binding modes for selenols on gold: molecules at bridge sites have lower conductance than molecules at three-fold hollow sites. The monolayer is dynamic, with molecules switching reversibly between the two site-dependent conductance states. Monolayer dynamics enable adsorbed molecules to reorganize according to the underlying gold electronic structure over long distances, which facilitates emergence of the self-organized rows of dimers. The low-conductance molecules assume a (7 × 7) all-bridge configuration, similar to the analogous 1-adamantanethiolate monolayers on Au{111}. The high-conductance molecules self-organize upon mild annealing into distinctive rows of dimers with long-range order, described by a (6√5 × 6√5)R15° unit cell.

We report the facile fabrication of high-quality, robust alkanethiolate self-assembled monolayers (SAMs) on germanium substrates. Our approach to produce SAMs on technologically important substrates takes advantage of the many strategies previously developed for gold-thiol self-assembly. Direct self-assembly of alkanethiols on germanium is impeded by the presence of the native germanium oxide. Using a mixture of water and ethanol, we create an environment where both adsorbate and oxide are sufficiently soluble to enable SAM deposition in a single step. By manipulating reaction conditions, monolayers form spontaneously on untreated germanium, which opens new avenues for the exploitation of self-assembly on semiconductor surfaces. While our analyses initially focused on 1-dodecanethiol on Ge(100), this method is robust and we have extended its use to include a range of adsorbates on Ge(100) as well as to the Ge(111) and Ge(110) substrates.

Chemical patterns prepared by self-assembly, combined with soft lithography or photolithography, are directly compared. Pattern fidelity can be controlled in both cases but patterning at the low densities necessary for small-molecule probe capture of large biomolecule targets is better accomplished using microcontact insertion printing (μCIP). Surfaces patterned by μCIP are used to capture biomolecule binding partners for the small molecules dopamine and biotin.

We present a configuration for fluorescence spectroscopy that exploits the optical properties of semitransparent gold films and widely available instrumentation. This method enables monitoring of biomolecule interactions with small molecules tethered on substrates in multicomponent environments. The neurotransmitter serotonin (5-hydroxytryptamine) was covalently attached to self-assembled monolayers on thin gold films at low density to facilitate antibody recognition. Protein-binding studies were performed in a fluorescently labeled immunoassay format. We find that the use of this method enables evaluation of nonspecific binding and relative quantification of specific binding between competing binding partners. This fluorescence spectroscopy technique has the potential to assess biosensor or medical device responses in complex biological matrices.

Single-molecule measurement techniques have illuminated unprecedented details of chemical behavior, including observations of the motion of a single molecule on a surface, and even the vibration of a single bond within a molecule. Such measurements are critical to our understanding of entities ranging from single atoms to the most complex protein assemblies. We provide an overview of the strikingly diverse classes of measurements that can be used to quantify single-molecule properties, including those of single macromolecules and single molecular assemblies, and discuss the quantitative insights they provide. Examples are drawn from across the single-molecule literature, ranging from ultrahigh vacuum scanning tunneling microscopy studies of adsorbate diffusion on surfaces to fluorescence studies of protein conformational changes in solution.Keywords (): atomic force microscopy; electron spin resonance; fluorescence; Förster resonance energy transfer; magnetic resonance; magnetic resonance force microscopy; nitrogen vacancy; optical microscopy; photoactivation light microscopy; scanning tunneling microscopy; single molecule; spin; subdiffraction microscopy; transmission electron microscopy

Small aluminum clusters (<30 atoms) have been the subject of extensive study, demonstrating markedly different properties as even a single atom is added or removed. Successfully depositing and characterizing mass-selected clusters are the next steps in producing precise surfaces or cluster-assembled materials that demonstrate properties that differ from those of bulk materials. This proves to be difficult due to the reactivity of these all-metal clusters and their susceptibility to agglomerate in bulk form. In the present study, we have successfully deposited Al17− onto self-assembled monolayers using reactivity previously characterized in the gas phase.

Understanding the factors controlling the band gap energy of cluster-assembled materials is an important step toward nanoassemblies with tailored properties. To this end, we have investigated the band gap energies of cluster assemblies involving arsenic clusters bound to carbonyl charge-transfer complexes, M(CO)3, M = Cr, Mo, W. The binding of a single charge-transfer complex is shown to have a small effect on the band gap energy because the arsenic lone pair orbital and metal carbonyl orbitals are closely aligned in energy, resulting in a gap similar to the original cluster. The band gap energy is also found to be insensitive to the architecture of the assembled material. In the case where two charge-transfer complexes are bound to the cluster, the bottom of the conduction band is shown to be localized on a solvent molecule bound to the metal carbonyl.

We describe the self-assembly and chemical functionalization of oligo(ethylene glycol)alkanethiol (OEG) molecules. Insertion of OEGs into n-alkanethiolate monolayer matrices depends considerably on terminal functionality, unlike insertion of n-alkanethiols. Thus, inserted fractions of OEGs cannot be inferred from related systems, yet tuning, to some extent, is possible by controlling insertion parameters. Furthermore, while the in situ reactivities of dilute inserted carboxy- or amine-terminated OEGs versus n-alkanethiols protruding from the surrounding matrix are similar in amide bond formation reactions, complete monolayers of OEGs react to a greater extent compared to n-alkanethiols with similar terminal functionalities. We interpret these differences in terms of the reduced crystalline packing of terminal ethylene glycol groups of OEGs.

We have used a scanning tunneling microscope (STM) to manipulate heteroleptic phthalocyaninato, naphthalocyaninato, and porphyrinato double-decker (DD) molecules at the liquid−solid interface between 1-phenyloctane solvent and graphite. We employed nanografting of phthalocyanines with eight octyl chains to place these molecules into a matrix of heteroleptic DD molecules; the overlayer structure is epitaxial on graphite. We have also used nanografting to place DD molecules in matrices of single-layer phthalocyanines with octyl chains. Rectangular scans with a STM at low bias voltage resulted in the removal of the adsorbed DD molecular layer and substituted the DD molecules with bilayer-stacked phthalocyanines from phenyloctane solution. Single heteroleptic DD molecules with lutetium sandwiched between naphthalocyanine and octaethylporphyrin were decomposed with voltage pulses from the probe tip; the top octaethylporphyrin ligand was removed, and the bottom naphthalocyanine ligand remained on the surface. A domain of decomposed molecules was formed within the DD molecular domain, and the boundary of the decomposed molecular domain self-cured to become rectangular. We demonstrated a molecular “sliding block puzzle” with cascades of DD molecules on the graphite surface.

We have measured the polarizabilities of four families of molecules adsorbed to Au{111} surfaces, with structures ranging from fully saturated to fully conjugated, including single-molecule switches. Measured polarizabilities increase with increasing length and conjugation in the adsorbed molecules and are consistent with theoretical calculations. For single-molecule switches, the polarizability reflects the difference in substrate−molecule electronic coupling in the ON and OFF conductance states. Calculations suggest that the switch between the two conductance states is correlated with an oxidation state change in a nitro functional group in the switch molecules.Keywords: contacts; microwave measurements; molecular devices; polarizability; scanning tunneling microscopy; self-assembly; single-molecule spectroscopy

We report the electrochemically driven phase transformation of amide-containing alkanethiol, 3-mercapto-N-nonylpropionamide (1ATC9) self-assembled monolayers (SAMs) into a linear nanostructure. Hydrogen-bonding interactions between buried amide groups cause multistep electrochemical desorption and enable an unusual phase change, affording a less dense, textured structure. Single-component 1ATC9 SAMs prepared in solution at room temperature for 24 h consist of two phases with different apparent heights in scanning tunneling microscope images; these phases are readily manipulated by controlling solution temperature and deposition time. Intermolecular hydrogen-bonding interactions give high thermal stability to the films. The presence of two independent cathodic peaks in 1ATC9 monolayer voltammograms indicates two-step reductive desorption. A monolayer phase transition occurs after the first cathodic peak, transforming a close-packed monolayer into a striped phase that is energetically favored at low surface-thiolate density. Scanning tunneling microscopy, cyclic voltammetry, infrared reflection absorption spectroscopy, and X-ray photoelectron spectroscopy reveal electrochemical nanostructuring, driven by partial reductive desorption and strong interchain hydrogen bonding. The resultant striped, low-coverage phase is inaccessible by other synthetic preparations, except controlled dosing in ultrahigh vacuum.

We have utilized tunneling electrons and thiophene adsorption to draw deuterium (D) from within the single-crystal bulk beneath Pd{110} up to subsurface adsorption sites. We found local faceting induced by this process, and determined the energy threshold of drawing bulk D to subsurface sites to be 0.38 ± 0.02 eV. We show that these facets propagate along the ⟨11̅0⟩ direction of the substrate, and that Pd{110} adopts the (1 × 1) surface reconstruction on the induced facets, yet maintains the paired row (1 × 2) structure on unaffected regions. After producing subsurface D, the facet plane tilts 3.2 ± 0.8° off the substrate plane.Keywords (keywords): catalysis; faceting; hydrodesulfurization; Pd{110} reconstruction; subsurface deuterium; thiophene;

One pathway toward nanomaterials with controllable band gaps is to assemble solids where atomic clusters serve as building blocks, since the electronic structures of clusters vary with size and composition. To study the role of organization in cluster assemblies, we synthesized multiple architectures incorporating As73− clusters through control of the countercations. Optical measurements revealed that the band gaps vary from 1.1−2.1 eV, even though the assemblies are constructed from the identical cluster building block. Theoretical studies explain this variation as being a result of altering the lowest unoccupied molecular orbital levels by changing the countercations. Additional variations in the gap are made by covalently linking the clusters with species of varying electronegativity to alter the degree of charge transfer. These findings offer a general protocol for syntheses of nanoassemblies with tunable electronic properties.Keywords: band-gap; cluster-assembled materials; diffuse reflectance spectroscopy; nanomaterials; Zintl-ions

We have directly observed electrochemically driven single-molecule station changes within bistable rotaxane molecules anchored laterally on gold surfaces. These observations were achieved by employing molecular designs that significantly reduced the mobility and enhanced the assembly of molecules in orientations conducive to direct measurement using scanning tunneling microscopy. The results reveal molecular-level details of the station changes of surface-bound bistable rotaxane molecules, correlated with their different redox states. The mechanical motions within these mechanically interlocked molecules are influenced by their interactions with the surface and with neighboring molecules, as well as by the conformations of the dumbbell component.Keywords: bistable rotaxanes; electrochemistry; mechanically interlocked molecules; scanning tunneling microscopy; single-molecule motion

Assembling ionic solids where clusters are arranged in different architectures is a promising strategy for developing band gap-engineered nanomaterials. We synthesized a series of cluster-assembled ionic solids composed of [As7−Au2−As7]4− in zero-, one-, and two-dimensional architectures. Higher connectivity is expected to decrease the band gap energy through band broadening. However, optical measurements indicate that the band gap energy increases from 1.69 to 1.98 eV when moving from zero- to two-dimensional assemblies. This increase is a result of the local electric fields generated by the adjacent counterions, which preferentially stabilize the occupied cluster electronic states.Keywords: arsenic clusters; band gap tuning; cluster-assembled materials

Self-assembled monolayers using functionalized cage molecules offer distinct advantages because of their symmetry, lack of conformational flexibility, and well-defined chemistries. While these systems have not yet been studied to the extent that linear alkanethiols on Au{1 1 1} have been, early explorations indicate great promise and important differences. For simple cage molecules that bind upright on the substrate, tilt domain boundaries found in linear chain systems are completely eliminated. Cage molecules can be designed to have a great range of intermolecular interactions, which thereby define the stabilities of the assemblies. Weakly interacting monolayers, such as those of 1-adamantanethiol on Au{1 1 1} are labile relative to exchange reactions from solution, vapor, or contact, and thus can be used as sacrificial placeholders and diffusion barriers in soft lithography. Such molecules can be further functionalized to serve as molecular resists for chemical patterning. Cage molecules can also be designed with directional interactions, as for carboranethiols, where molecules with identical lattices have dramatically different chemical and physical properties, and film stabilities. Multifunctional cage molecules enable further directed surface reactions, higher order supramolecular assembly, and ultimately, precise three-dimensional assembly off the surface.

Dihydroazulenes are photochromic molecules that reversibly switch between two distinct geometric and conductivity states. Molecular design, surface attachment, and precise control over the assembly of such molecular machines are critical in order to understand molecular function and motion at the nanoscale. Here, we use surface-enhanced Raman spectroscopy on special atomically flat, plasmonically enhanced substrates to measure the photoreaction kinetics of isolated dihydroazulene-functionalized molecules assembled on Au{111}, which undergo a ring-opening reaction upon illumination with UV light and switch back to the initial isomer via thermal relaxation. Photokinetic analyses reveal the high efficiency of the dihydroazulene photoreaction on solid substrates compared to other photoswitches. An order of magnitude decrease in the photoreaction cross section of surface-bound dihydroazulenes was observed when compared with the cross sections of these molecules in solution.

Self-assembled monolayers are a unique class of nanostructured materials, with properties determined by their molecular lattice structures, as well as the interfaces with their substrates and environments. As with other nanostructured materials, defects and dimensionality play important roles in the physical, chemical, and biological properties of the monolayers. In this review, we discuss monolayer structures ranging from surfaces (two-dimensional) down to single molecules (zero-dimensional), with a focus on applications of each type of structure, and on techniques that enable characterization of monolayer physical properties down to the single-molecule scale.

Chemical patterns prepared by self-assembly, combined with soft lithography or photolithography, are directly compared. Pattern fidelity can be controlled in both cases but patterning at the low densities necessary for small-molecule probe capture of large biomolecule targets is better accomplished using microcontact insertion printing (μCIP). Surfaces patterned by μCIP are used to capture biomolecule binding partners for the small molecules dopamine and biotin.

The dimeric Zintl ion [Hg2(As7)2]4− has been synthesized with high crystalline yield from the reaction of an ethylendiamine solution of the intermetallic Zintl phase K3As7 with diphenyl mercury. Single crystal X-ray diffraction of [K(2,2,2-crypt)]4[Hg2As14], 1 (2,2,2-crypt = 4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]-hexacosane), reveals that the cluster anion exhibits a Hg–Hg bond and the compound has been further characterized using Raman spectroscopy, cyclic voltammetry and its band gap energy was measured. Theoretical studies provide a microscopic understanding of the bonding in this unusual compound.

We have synthesized a series of cluster assembled materials in which the building blocks are As73− clusters linked by group 12 metals, Zn, Cd and Hg, to investigate the effect of covalent linkers on the band gap energy. The synthesized assemblies include zero dimensional assemblies of [Zn(As7)2]4−, [Cd(As7)2]4−, [Hg2(As7)2]4−, and [HgAsAs14]3− in which the clusters are separated by cryptated counterions, and assemblies in which [Zn(As7)2]4−, [Cd(As7)2]4− are linked by free alkali atoms into unusual three-dimensional structures. These covalently linked cluster-assembled materials have been characterized by elemental analysis, EDX and single-crystal X-ray diffraction. The crystal structure analysis revealed that in the case of Zn and Cd, the two As73− units are linked by the metal ion, while in the case of Hg, two As73− units are linked by either Hg–Hg or Hg–As dimers. Optical measurements indicate that the band gap energy ranges from 1.62 eV to 2.21 eV. A theoretical description based on cluster orbital theory is used to provide a microscopic understanding of the electronic character of the composite building blocks and the observed variations in the band gap energy.

Graphene has attracted great interest for its superior physical, chemical, mechanical, and electrical properties that enable a wide range of applications from electronics to nanoelectromechanical systems. Functionalization is among the significant vectors that drive graphene towards technological applications. While the physical properties of graphene have been at the center of attention, we still lack the knowledge framework for targeted graphene functionalization. In this critical review, we describe some of the important chemical and physical processes for graphene functionalization. We also identify six major challenges in graphene research and give perspectives and practical strategies for both fundamental studies and applications of graphene (315 references).

We report the facile fabrication of high-quality, robust alkanethiolate self-assembled monolayers (SAMs) on germanium substrates. Our approach to produce SAMs on technologically important substrates takes advantage of the many strategies previously developed for gold-thiol self-assembly. Direct self-assembly of alkanethiols on germanium is impeded by the presence of the native germanium oxide. Using a mixture of water and ethanol, we create an environment where both adsorbate and oxide are sufficiently soluble to enable SAM deposition in a single step. By manipulating reaction conditions, monolayers form spontaneously on untreated germanium, which opens new avenues for the exploitation of self-assembly on semiconductor surfaces. While our analyses initially focused on 1-dodecanethiol on Ge(100), this method is robust and we have extended its use to include a range of adsorbates on Ge(100) as well as to the Ge(111) and Ge(110) substrates.