Co-reporter:Li Xiong;Hua Li;Li-Na Jiang;Jing-Ming Ge;Wen-Chao Yang;Xiao Lei Zhu;Guang-Fu Yang
Journal of Agricultural and Food Chemistry February 8, 2017 Volume 65(Issue 5) pp:1021-1029
Publication Date(Web):January 22, 2017
DOI:10.1021/acs.jafc.6b05134
A series of diphenyl ether-containing pyrazole-carboxamide derivatives was designed and synthesized as new succinate ubiquinone oxidoreductase (SQR) inhibitors. This highly potent molecular scaffold was developed from a moderately activie hit 3, obtained from our previous pharmacophore-linked fragment virtual screening (PFVS) method. The results of greenhouse tests indicated that some analogues showed good SQR inhibitory activity, with promising fungicidal activity against Rhizoctonia solani and Sphaerotheca fuliginea at a dosage of 200 mg/L. Most surprisingly, compound 62 showed the highest SQR inhibitory activity with a Ki value of 0.081 μM, about 4-fold more potent than penthiopyrad (Ki = 0.307 μM). In addition, compounds 43 and 62 displayed excellent fungicidal activity even at a dosage as low as 6.25 mg/L, which was superior to thifluzamide. Moreover, compound 62 exhibited excellent protection effect against R. solani and provided about 81.2% protective control efficancy after 21 days with two sprayings. The present work indicated that these two compounds could be used as potential agricultural fungicides targeting SQR.Keywords: complex II; diphenyl ether; molecular docking; structure−activity relationship; succinate ubiquinone oxidoreductase;
Co-reporter:Li Xiong, Xiao-Lei Zhu, Hua-Wei Gao, Yu Fu, Sheng-Quan Hu, Li-Na Jiang, Wen-Chao Yang, and Guang-Fu Yang
Journal of Agricultural and Food Chemistry 2016 Volume 64(Issue 24) pp:4830-4837
Publication Date(Web):May 26, 2016
DOI:10.1021/acs.jafc.6b00325
Succinate-ubiquinone oxidoreductase (SQR) is an attractive target for fungicide discovery. Herein, we report the discovery of novel SQR inhibitors using a pharmacophore-linked fragment virtual screening approach, a new drug design method developed in our laboratory. Among newly designed compounds, compound 9s was identified as the most potent inhibitor with a Ki value of 34 nM against porcine SQR, displaying approximately 10-fold higher potency than that of the commercial control penthiopyrad. Further inhibitory kinetics studies revealed that compound 9s is a noncompetitive inhibitor with respect to the substrate cytochrome c and DCIP. Interestingly, compounds 8a, 9h, 9j, and 9k exhibited good in vivo preventive effects against Rhizoctonia solani. The results obtained from molecular modeling showed that the orientation of the R2 group had a significant effect on binding with the protein.
Co-reporter:Li Xiong, Xiao-Lei Zhu, Yan-Qing Shen, Wickramabahu Kandergama Wasala Mudiyanselage Wishwajith, Kui Li, Guang-Fu Yang
European Journal of Medicinal Chemistry 2015 Volume 95() pp:424-434
Publication Date(Web):5 May 2015
DOI:10.1016/j.ejmech.2015.03.060
•A series of N-(2-benzooxazol-5-yl)-pyrazole-4-carboxamides were designed and synthesized.•All compounds showed excellent inhibitory activity against porcine SCR.•Compound 13b with a Ki value of 11 nM was identified as the most potent candidate.•13b is non-competitive inhibitor with respect to the substrate cytochrome c and DCIP.•The binding model of the title compounds was established by computational simulations.Succinate–ubiquinone oxidoreductase (SQR, EC 1.3.5.1, complex II), an essential component of cellular respiratory chain and tricarboxylic acid (or Krebs) cycle, has been identified as one of the most significant targets for pharmaceutical and agrochemical. Herein, with the aim of discovery of new antibacterial lead structure, a series of N-benzoxazol-5-yl-pyrazole-4-carboxamides were designed, synthesized, and evaluated for their SQR inhibitory effects. Very promisingly, one candidate (Ki = 11 nM, porcine SQR) was successfully identified as the most potent synthetic SQR inhibitor so far. The further inhibitory kinetics studies revealed that the candidate is non-competitive with respect to the substrate cytochrome c and DCIP. Computational simulations revealed that the titled compounds have formed hydrogen bond with D_Y91 and B_W173 and the pyrazole ring formed cation-π interaction with C_R46. In addition, in R1 position, –CHF2 group has increased the binding affinity and decreased the entropy contribution, while –CF3 group displayed completely opposite effect when bound with SQR. The results of the present work showed that N-benzoxazol-5-yl-pyrazole-4-carboxamide is a new scaffold for discovery of SQR inhibitors and worth further study.A series of N-benzooxazol-5-yl-pyrazole-4-carboxamides were designed and synthesized as potent SQR inhibitors. One candidate (Ki = 11 nM) was successfully identified as the most potent synthetic SQR inhibitor so far.
Co-reporter:Hui Li;Wen-Chao Yang ;Guang-Fu Yang
Chemical Biology & Drug Design 2014 Volume 83( Issue 1) pp:71-80
Publication Date(Web):
DOI:10.1111/cbdd.12199
Antimycin and cyazofamid are specific inhibitors of the mitochondrial respiratory chain and bind to the Qi site of the cytochrome bc1 complex. With the aim to understand the detailed molecular inhibition mechanism of Qi inhibitors, we performed a comparative investigation of the inhibitory kinetics of them against the porcine bc1 complex. The results showed that antimycin is a slow tight-binding inhibitor of succinate–cytochrome c reductase (SCR) with Ki = 0.033 ± 0.00027 nm and non-competitive inhibition with respect to cytochrome c. Cyazofamid is a classical inhibitor of SCR with Ki = 12.90 ± 0.91 μm and a non-competitive inhibitor with respect to cytochrome c. Both of them show competitive inhibition with respect to substrate DBH2. Further molecular docking and quantum mechanics calculations were performed. The results showed that antimycin underwent significant conformational change upon the binding. The energy barrier between the conformations in the crystal and in the binding pocket is ~13.63 kcal/mol. Antimycin formed an H-bond with Asp228 and two water-bridged H-bonds with Lys227 and His201, whereas cyazofamid formed only one H-bond with Asp228. The conformational change and the different hydrogen bonding network might account for why antimycin is a slow tight-binding inhibitor, whereas cyazofamid is a classic inhibitor.
Co-reporter:Jingming Gong, Xinmei Han, Xiaolei Zhu, Zhangqiong Guan
Biosensors and Bioelectronics 2014 Volume 61() pp:379-385
Publication Date(Web):15 November 2014
DOI:10.1016/j.bios.2014.05.044
•A sensitive, simple, and label-free capacitive sensor developed for the detection of OPs.•As-prepared sensor fabricated by alternate assembly of exfoliated LDH nanosheets and carboxymethyl-β-cyclodextrin.•Such a newly designed (LDH/CMCD)n multilayer film, combining the individual properties of CMCD and LDH nanosheets.•The first smart combination of LDH/CMCD LBL film and capacitive transduction.Novel organic–inorganic hybrid ultrathin films were fabricated by alternate assembly of cationic exfoliated Mg–Al-layered double hydroxide (LDH) nanosheets and carboxymethyl-β-cyclodextrin (CMCD) as a polyanion onto a glassy carbon electrode (GCE) via a layer-by-layer (LBL) approach. The multilayer films were then characterized by means of X-ray powder diffraction (XRD), infrared spectroscopy (IR), and scanning electron microscopy (SEM). These films were found to possess a long range stacking order in the normal direction of the substrate with a continuous and uniform morphology. Its electrochemical performance was systematically investigated. Our results demonstrate that such a newly designed (LDH/CMCD)n multilayer film, combining the individual properties of CMCD (a high supramolecule recognition and enrichment capability) together with LDH nanosheets (a rigid inorganic matrix), can be applied to a sensitive, simple, and label-free capacitive detection of acephatemet (AM). Molecular docking calculations further disclose that the selective sensing behavior toward AM may be attributed to the specific binding ability of CMCD to AM. Under the optimized conditions, the capacitive change of AM was proportional to its concentration ranging from 0.001 to 0.10 μg mL−1 and 0.1 to 0.8 μg mL−1 with a detection limit 0.6 ng mL−1 (S/N=3). Toward the goal for practical applications, this simple probe was further evaluated by monitoring AM in real samples.