Co-reporter:Jeong Hyun Lee, Raiees Andrabi, Ching-Yao Su, Anila Yasmeen, ... Andrew B. Ward
Immunity 2017 Volume 46, Issue 4(Volume 46, Issue 4) pp:
Publication Date(Web):18 April 2017
DOI:10.1016/j.immuni.2017.03.017
•Apex binding antibody PGT145 engages all three gp120 protomers simultaneously•Epitope recognition is chemical-feature specific•PGT145-class antibodies exhibit structural features that reflect bovine antibodies•PGT145-class antibody maturation is dependent on structural stabilization of HCDR3Broadly neutralizing antibodies (bnAbs) to HIV delineate vaccine targets and are prophylactic and therapeutic agents. Some of the most potent bnAbs target a quaternary epitope at the apex of the surface HIV envelope (Env) trimer. Using cryo-electron microscopy, we solved the atomic structure of an apex bnAb, PGT145, in complex with Env. We showed that the long anionic HCDR3 of PGT145 penetrated between glycans at the trimer 3-fold axis, to contact peptide residues from all three Env protomers, and thus explains its highly trimer-specific nature. Somatic hypermutation in the other CDRs of PGT145 were crucially involved in stabilizing the structure of the HCDR3, similar to bovine antibodies, to aid in recognition of a cluster of conserved basic residues hypothesized to facilitate trimer disassembly during viral entry. Overall, the findings exemplify the creative solutions that the human immune system can evolve to recognize a conserved motif buried under a canopy of glycans.
Co-reporter:James E. Voss, Raiees Andrabi, Laura E. McCoy, Natalia de Val, ... Dennis R. Burton
Cell Reports 2017 Volume 21, Issue 1(Volume 21, Issue 1) pp:
Publication Date(Web):3 October 2017
DOI:10.1016/j.celrep.2017.09.024
•Precursor V2-apex bnAb neutralization-sensitive Envs possess a common glycan hole•Sensitive Envs can be adapted to SOSIP format as V2-apex-focusing immunogens•Immunogens elicit nAbs targeting critical components of the bnAb epitope in rabbits•Select nAbs elicited show dependence on V2 lysines and glycans also important for bnAbsRecent efforts toward HIV vaccine development include the design of immunogens that can engage B cell receptors with the potential to affinity mature into broadly neutralizing antibodies (bnAbs). V2-apex bnAbs, which bind a protein-glycan region on HIV envelope glycoprotein (Env) trimer, are among the most broad and potent described. We show here that a rare “glycan hole” at the V2 apex is enriched in HIV isolates neutralized by inferred precursors of prototype V2-apex bnAbs. To investigate whether this feature could focus neutralizing responses onto the apex bnAb region, we immunized wild-type rabbits with soluble trimers adapted from these Envs. Potent autologous tier 2 neutralizing responses targeting basic residues in strand C of the V2 region, which forms the core epitope for V2-apex bnAbs, were observed. Neutralizing monoclonal antibodies (mAbs) derived from these animals display features promising for subsequent broadening of the response.Download high-res image (231KB)Download full-size image
Co-reporter:Raiees Andrabi, Ching-Yao Su, Chi-Hui Liang, Sachin S. Shivatare, ... Dennis R. Burton
Immunity 2017 Volume 47, Issue 5(Volume 47, Issue 5) pp:
Publication Date(Web):21 November 2017
DOI:10.1016/j.immuni.2017.10.012
Co-reporter:Raiees Andrabi, Ching-Yao Su, Chi-Hui Liang, Sachin S. Shivatare, ... Dennis R. Burton
Immunity 2017 Volume 47, Issue 3(Volume 47, Issue 3) pp:
Publication Date(Web):19 September 2017
DOI:10.1016/j.immuni.2017.08.006
•CAP256 V2 apex bnAbs affinity mature with sialic acid (SIA)-bearing HIV Env glycans•Both germline and somatic-mutated HC-Ab residues contribute to SIA recognition•SIA-specific maturation pattern is conserved in two genetically related bnAb lineages•SIA-specific affinity maturation counters virus escape and helps bnAb developmentApex broadly neutralizing HIV antibodies (bnAbs) recognize glycans and protein surface close to the 3-fold axis of the envelope (Env) trimer and are among the most potent and broad Abs described. The evolution of apex bnAbs from one donor (CAP256) has been studied in detail and many Abs at different stages of maturation have been described. Using diverse engineering tools, we investigated the involvement of glycan recognition in the development of the CAP256.VRC26 Ab lineage. We found that sialic acid-bearing glycans were recognized by germline-encoded and somatically mutated residues on the Ab heavy chain. This recognition provided an “anchor” for the Abs as the core protein epitope varies, prevented complete neutralization escape, and eventually led to broadening of the response. These findings illustrate how glycan-specific maturation enables a human Ab to cope with pathogen escape mechanisms and will aid in optimization of immunization strategies to induce V2 apex bnAb responses.Download high-res image (198KB)Download full-size image
Co-reporter:Devin Sok;Bryan Briney;Joseph G. Jardine;Daniel W. Kulp;Sergey Menis;Matthias Pauthner;Andrew Wood;E-Chiang Lee;Khoa M. Le;Meaghan Jones;Alejandra Ramos;Oleksandr Kalyuzhniy;Yumiko Adachi;Michael Kubitz;Skye MacPherson;Allan Bradley;Glenn A. Friedrich;William R. Schief
Science 2016 Vol 353(6307) pp:1557-1560
Publication Date(Web):30 Sep 2016
DOI:10.1126/science.aah3945
Abstract
A major obstacle to a broadly neutralizing antibody (bnAb)–based HIV vaccine is the activation of appropriate B cell precursors. Germline-targeting immunogens must be capable of priming rare bnAb precursors in the physiological setting. We tested the ability of the VRC01-class bnAb germline-targeting immunogen eOD-GT8 60mer (60-subunit self-assembling nanoparticle) to activate appropriate precursors in mice transgenic for human immunoglobulin (Ig) loci. Despite an average frequency of, at most, about one VRC01-class precursor per mouse, we found that at least 29% of singly immunized mice produced a VRC01-class memory response, suggesting that priming generally succeeded when at least one precursor was present. The results demonstrate the feasibility of using germline targeting to prime specific and exceedingly rare bnAb-precursor B cells within a humanlike repertoire.
Co-reporter:Erica Ollmann Saphire
PNAS 2015 Volume 112 (Issue 33 ) pp:10082-10083
Publication Date(Web):2015-08-18
DOI:10.1073/pnas.1513050112
Co-reporter:Joseph G. Jardine;Takayuki Ota;Devin Sok;Matthias Pauthner;Daniel W. Kulp;Oleksandr Kalyuzhniy;Patrick D. Skog;Theresa C. Thinnes;Deepika Bhullar;Bryan Briney;Sergey Menis;Meaghan Jones;Mike Kubitz;Skye Spencer;Yumiko Adachi;William R. Schief;David Nemazee
Science 2015 Vol 349(6244) pp:156-161
Publication Date(Web):10 Jul 2015
DOI:10.1126/science.aac5894
Steps in the right direction
HIV-1 mutates rapidly, making it difficult to design a vaccine that will protect people against all of the virus' iterations. A potential successful vaccine design might protect by eliciting broadly neutralizing antibodies (bNAbs), which target specific regions on HIV-1's trimeric envelope glycoprotein (Env) (see the Perspective by Mascola). Jardine et al. used mice engineered to express germline-reverted heavy chains of a particular bNAb and immunized them with an Env-based immunogen designed to bind to precursors of that bNAb. Sanders et al. compared rabbits and monkeys immunized with Env trimers that adopt a nativelike conformation. In both cases, immunized animals produced antibodies that shared similarities with bNAbs. Boosting these animals with other immunogens may drive these antibodies to further mutate into the longsought bNAbs. Chen et al. report that retaining the cytoplasmic domain of Env proteins may be important to attract bNAbs. Removing the cytoplasmic domain may distract the immune response and instead generate antibodies that target epitopes on Env that would not lead to protection.
Science, this issue p. 139, 10.1126/science.aac4223, p. 156; see also p. 191
Co-reporter:Devin Sok;Katie J. Doores;Bryan Briney;Khoa M. Le;Karen L. Saye-Francisco;Alejandra Ramos;Jean-Philippe Julien;Daniel W. Kulp;Sergey Menis;Lalinda Wickramasinghe;Michael S. Seaman;William R. Schief;Ian A. Wilson;Pascal Poignard
Science Translational Medicine 2014 Volume 6(Issue 236) pp:236ra63
Publication Date(Web):14 May 2014
DOI:10.1126/scitranslmed.3008104
HIV broadly neutralizing monoclonal antibodies targeting the high-mannose patch of Env can use alternate glycan sites for neutralization.
Co-reporter:Devin Sok;Jean-Philippe Julien;Matthias Pauthner;Jessica Hsueh;Marit J. van Gils;Karen L. Saye-Francisco;Khoa M. Le;Bryan Briney;Peter S. Lee;Michael S. Seaman;Yuanzi Hua;Jeong Hyun Lee;Andrew B. Ward;Ian A. Wilson;John P. Moore;Rogier W. Sanders
PNAS 2014 Volume 111 (Issue 49 ) pp:17624-17629
Publication Date(Web):2014-12-09
DOI:10.1073/pnas.1415789111
Broadly neutralizing antibodies (bnAbs) targeting the trimer apex of HIV envelope are favored candidates for vaccine design
and immunotherapy because of their great neutralization breadth and potency. However, methods of isolating bnAbs against this
site have been limited by the quaternary nature of the epitope region. Here we report the use of a recombinant HIV envelope
trimer, BG505 SOSIP.664 gp140, as an affinity reagent to isolate quaternary-dependent bnAbs from the peripheral blood mononuclear
cells of a chronically infected donor. The newly isolated bnAbs, named “PGDM1400–1412,” show a wide range of neutralization
breadth and potency. One of these variants, PGDM1400, is exceptionally broad and potent with cross-clade neutralization coverage
of 83% at a median IC50 of 0.003 µg/mL. Overall, our results highlight the utility of BG505 SOSIP.664 gp140 as a tool for the isolation of quaternary-dependent
antibodies and reveal a mosaic of antibody responses against the trimer apex within a clonal family.
Co-reporter:Brian Moldt;Eva G. Rakasz;Po-Ying Chan-Hui;Niccole Schultz;Kristine Swiderek;Shari M. Piaskowski;Kimberly L. Weisgrau;Zachary Bergman;David I. Watkins;Pascal Poignard
PNAS 2012 Volume 109 (Issue 46 ) pp:18921-18925
Publication Date(Web):2012-11-13
DOI:10.1073/pnas.1214785109
Most animal studies using passive administration of HIV broadly neutralizing monoclonal antibodies (bnMAbs) have associated
protection against high-dose mucosal viral challenge with relatively high serum concentrations of antibody. We recently identified
several bnMAbs remarkable for their in vitro potency against HIV. Of these bnMAbs, PGT121 is one of the most broad and potent
antibodies isolated to date and shows 10- to 100-fold higher neutralizing activity than previously characterized bnMAbs. To
evaluate the protective potency of PGT121 in vivo, we performed a protection study in rhesus macaques. Animals were i.v. administered
5 mg/kg, 1 mg/kg, or 0.2 mg/kg PGT121 24 h before being vaginally challenged with a single high dose of chimeric simian-human
immunodeficiency virus (SHIV)SF162P3. Sterilizing immunity was achieved in all animals administered 5 mg/kg and 1 mg/kg and three of five animals administered
0.2 mg/kg PGT121, with corresponding average antibody serum concentrations of 95 µg/mL, 15 µg/mL, and 1.8 µg/mL, respectively.
The results suggest that a protective serum concentration for PGT121 is in the single-digit µg/mL for SHIVSF162P3, showing that PGT121 can mediate sterilizing immunity at serum concentrations that are significantly lower than those observed
in previous studies and that may be achievable through vaccination with the development of a suitable immunogen.
Co-reporter:Dennis R. Burton;Pascal Poignard;Robyn L. Stanfield;Ian A. Wilson
Science 2012 Volume 337(Issue 6091) pp:183-186
Publication Date(Web):
DOI:10.1126/science.1225416
Abstract
Certain human pathogens avoid elimination by our immune system by rapidly mutating the surface protein sites targeted by antibody responses, and consequently they tend to be problematic for vaccine development. The behavior described is prominent for a subset of viruses—the highly antigenically diverse viruses—which include HIV, influenza, and hepatitis C viruses. However, these viruses do harbor highly conserved exposed sites, usually associated with function, which can be targeted by broadly neutralizing antibodies. Until recently, not many such antibodies were known, but advances in the field have enabled increasing numbers to be identified. Molecular characterizations of the antibodies and, most importantly, of the sites of vulnerability that they recognize give hope for the discovery of new vaccines and drugs.
Co-reporter:Laura M. Walker;Olivia Donau;Rajeev Gautam;Reza Sadjadpour;Devin Sok;Masashi Shingai;Alejandra Ramos;Robert Pejchal;Pascal Poignard;Melissa D. Simek;Yoshiaki Nishimura;Yu Geng;Ian A. Wilson;Malcolm A. Martin
PNAS 2011 Volume 108 (Issue 50 ) pp:20125-20129
Publication Date(Web):2011-12-13
DOI:10.1073/pnas.1117531108
It is widely believed that the induction of a broadly neutralizing antibody (bNAb) response will be a critical component of
a successful vaccine against HIV. A significant fraction of HIV-infected individuals mount bNAb responses, providing support
for the notion that such responses could be elicited through vaccination. Infection of macaques with simian immunodeficiency
virus (SIV) or SIV/HIV chimeric virus (SHIV) has been widely used to model aspects of HIV infection, but to date, only limited
bNAb responses have been described. Here, we screened plasma from 14 R5-tropic SHIV-infected macaques for broadly neutralizing
activity and identified a macaque with highly potent cross-clade plasma NAb response. Longitudinal studies showed that the
development of broad and autologous NAb responses occurred coincidentally in this animal. Serum-mapping studies, using pseudovirus
point mutants and antigen adsorption assays, indicated that the plasma bNAbs are specific for epitopes that include carbohydrates
and are critically dependent on the glycan at position 332 of Env gp120. The results described herein provide insight into
the development and evolution of a broad response, suggest that certain bNAb specificities may be more rapidly induced by
immunization than others, and provide a potential model for the facile study of the development of bNAb responses.
Co-reporter:Dennis R. Burton;Ann J. Hessell;Brandon F. Keele;Per Johan Klasse;Thomas A. Ketas;Brian Moldt;D. Cameron Dunlop;Pascal Poignard;Lara A. Doyle;Lisa Cavacini;Ronald S. Veazey;John P. Moore;
Proceedings of the National Academy of Sciences 2011 108(27) pp:11181-11186
Publication Date(Web):June 20, 2011
DOI:10.1073/pnas.1103012108
To guide vaccine design, we assessed whether human monoclonal antibodies (MAbs) b12 and b6 against the CD4 binding site (CD4bs)
on HIV-1 gp120 and F240 against an immundominant epitope on gp41 could prevent vaginal transmission of simian HIV (SHIV)-162P4
to macaques. The two anti-gp120 MAbs have similar monomeric gp120-binding properties, measured in vitro, but b12 is strongly
neutralizing and b6 is not. F240 is nonneutralizing. Applied vaginally at a high dose, the strongly neutralizing MAb b12 provided
sterilizing immunity in seven of seven animals, b6 in zero of five animals, and F240 in two of five animals. Compared with
control animals, the protection by b12 achieved statistical significance, whereas that caused by F240 did not. For two of
three unprotected F240-treated animals there was a trend toward lowered viremia. The potential protective effect of F240 may
relate to the relatively strong ability of this antibody to capture infectious virions. Additional passive transfer experiments
also indicated that the ability of the administered anti-gp120 MAbs to neutralize the challenge virus was a critical influence
on protection. Furthermore, when data from all of the experiments were combined, there was a significant increase in the number
of founder viruses establishing infection in animals receiving MAb b6, compared with other nonprotected macaques. Thus, a
gp120-binding, weakly neutralizing MAb to the CD4bs was, at best, completely ineffective at protection. A nonneutralizing
antibody to gp41 may have a limited capacity to protect, but the results suggest that the central focus of HIV-1 vaccine research
should be on the induction of potently neutralizing antibodies.
Co-reporter:Robert Pejchal;Katie J. Doores;Laura M. Walker;Reza Khayat;Po-Ssu Huang;Sheng-Kai Wang;Robyn L. Stanfield;Jean-Philippe Julien;Alejandra Ramos;Max Crispin;Rafael Depetris;Umesh Katpally;Andre Marozsan;Albert Cupo;Sebastien Maloveste;Yan Liu;Ryan McBride;Yukishige Ito;Rogier W. Sanders;Cassandra Ogohara;James C. Paulson;Ten Feizi;Christopher N. Scanlan;Chi-Huey Wong;John P. Moore;William C. Olson;Andrew B. Ward;Pascal Poignard;William R. Schief;Ian A. Wilson
Science 2011 Volume 334(Issue 6059) pp:1097-1103
Publication Date(Web):25 Nov 2011
DOI:10.1126/science.1213256
An HIV antibody achieves potency and breadth by binding simultaneously to two conserved glycans on the viral envelope protein.
Co-reporter:Rena D. Astronomo, Eiton Kaltgrad, Andrew K. Udit, Sheng-Kai Wang, Katie J. Doores, Cheng-Yuan Huang, Ralph Pantophlet, James C. Paulson, Chi-Huey Wong, M.G. Finn, Dennis R. Burton
Chemistry & Biology 2010 Volume 17(Issue 4) pp:357-370
Publication Date(Web):23 April 2010
DOI:10.1016/j.chembiol.2010.03.012
The broadly neutralizing antibody 2G12 recognizes a conserved cluster of high-mannose glycans on the surface envelope spike of HIV, suggesting that the “glycan shield” defense of the virus can be breached and may, under the right circumstances, serve as a vaccine target. In an attempt to recreate features of the glycan shield semisynthetically, oligomannosides were coupled to surface lysines on the icosahedral capsids of bacteriophage Qβ and cowpea mosaic virus (CPMV). The Qβ glycoconjugates, but not CPMV, presented oligomannose clusters that bind the antibody 2G12 with high affinity. However, antibodies against these 2G12 epitopes were not detected in immunized rabbits. Rather, alternative oligomannose epitopes on the conjugates were immunodominant and elicited high titers of anti-mannose antibodies that do not crossreact with the HIV envelope. The results presented reveal important design considerations for a carbohydrate-based vaccine component for HIV.
Co-reporter:Robert Pejchal;Laura M. Walker;Robyn L. Stanfield;Sanjay K. Phogat;Pascal Poignard;Wayne C. Koff;Ian A. Wilson
PNAS 2010 Volume 107 (Issue 25 ) pp:11483-11488
Publication Date(Web):2010-06-22
DOI:10.1073/pnas.1004600107
Development of an effective vaccine against HIV-1 will likely require elicitation of broad and potent neutralizing antibodies
against the trimeric surface envelope glycoprotein (Env). Monoclonal antibodies (mAbs) PG9 and PG16 neutralize ~80% of HIV-1
isolates across all clades with extraordinary potency and target novel epitopes preferentially expressed on Env trimers. As
these neutralization properties are ideal for a vaccine-elicited antibody response to HIV-1, their structural basis was investigated.
The crystal structure of the antigen-binding fragment (Fab) of PG16 at 2.5 Å resolution revealed its unusually long, 28-residue,
complementarity determining region (CDR) H3 forms a unique, stable subdomain that towers above the antibody surface. A 7-residue
“specificity loop” on the “hammerhead” subdomain was identified that, when transplanted from PG16 to PG9 and vice versa, accounted
for differences in the fine specificity and neutralization of these two mAbs. The PG16 electron density maps also revealed
that a CDR H3 tyrosine was sulfated, which was confirmed for both PG9 (doubly) and PG16 (singly) by mass spectral analysis.
We further showed that tyrosine sulfation plays a role in binding and neutralization. An N-linked glycan modification is observed
in the variable light chain, but not required for antigen recognition. Further, the crystal structure of the PG9 light chain
at 3.0 Å facilitated homology modeling to support the presence of these unusual features in PG9. Thus, PG9 and PG16 use unique
structural features to mediate potent neutralization of HIV-1 that may be of utility in antibody engineering and for high-affinity
recognition of a variety of therapeutic targets.
Co-reporter:Erin M. Scherer;Daniel P. Leaman;Michael B. Zwick;Andrew J. McMichael
PNAS 2010 107 (4 ) pp:1529-1534
Publication Date(Web):2010-01-26
DOI:10.1073/pnas.0909680107
The broadly neutralizing anti-HIV antibody 4E10 recognizes an epitope very close to the virus membrane on the glycoprotein
gp41. It was previously shown that epitope recognition improves in a membrane context and that 4E10 binds directly, albeit
weakly, to lipids. Furthermore, a crystal structure of Fab 4E10 complexed to an epitope peptide revealed that the centrally
placed, protruding H3 loop of the antibody heavy chain does not form peptide contacts. To investigate the hypothesis that
the H3 loop apex might interact with the viral membrane, two Trp residues in this region were substituted separately or in
combination with either Ala or Asp by site-directed mutagenesis. The resultant IgG variants exhibited similar affinities for
an epitope peptide as WT 4E10 but lower apparent affinities for both viral membrane mimetic liposomes and Env(−) virus. Variants
also exhibited lower apparent affinities for Env(+) virions and failed to significantly neutralize a number of 4E10-sensitive
viruses. For the extremely sensitive HXB2 virus, variants did neutralize, but at 37- to >250-fold lower titers than WT 4E10,
with Asp substitutions exerting a greater effect on neutralization potency than Ala substitutions. Because reductions in lipid
binding reflect trends in neutralization potency, we conclude that Trp residues in the antibody H3 loop enable membrane proximal
epitope recognition through favorable lipid interactions. The requirement for lipophilic residues such as Trp adjacent to
the antigen binding site may explain difficulties in eliciting 4E10-like neutralizing antibody responses by immunization and
helps define a unique motif for antibody recognition of membrane proximal antigens.
Co-reporter:Dennis R. Burton
PNAS 2010 Volume 107 (Issue 42 ) pp:17859-17860
Publication Date(Web):2010-10-19
DOI:10.1073/pnas.1012923107
Co-reporter:Laura M. Walker;Sanjay K. Phogat;Po-Ying Chan-Hui;Denise Wagner;Pham Phung;Julie L. Goss;Terri Wrin;Melissa D. Simek;Steven Fling;Jennifer L. Mitcham;Jennifer K. Lehrman;Frances H. Priddy;Ole A. Olsen;Steven M. Frey;Phillip W. Hammond;Stephen Kaminsky;Timothy Zamb;Matthew Moyle;Wayne C. Koff;Pascal Poignard
Science 2009 Volume 326(Issue 5950) pp:285-289
Publication Date(Web):09 Oct 2009
DOI:10.1126/science.1178746
Co-reporter:Bruce D. Walker
Science 2008 Volume 320(Issue 5877) pp:760-764
Publication Date(Web):09 May 2008
DOI:10.1126/science.1152622
Abstract
A quarter century of scientific discovery has been applied to developing an AIDS vaccine, yet this goal remains elusive. Specific characteristics of the virus, including the extreme genetic variability in circulating viral isolates worldwide, biological properties of HIV that impede immune attack, and a high mutation rate that allows for rapid escape from adaptive immune responses, render this a huge challenge. However, evidence of protection against AIDS viruses in animal models and control of HIV in humans under certain circumstances, together with scientific advances in understanding disease pathogenesis, provide a strong rationale and objective paths to continue the pursuit of an effective AIDS vaccine to stem the global epidemic.
Co-reporter:Ann J. Hessell,
Lars Hangartner,
Meredith Hunter,
Carin E. G. Havenith,
Frank J. Beurskens,
Joost M. Bakker,
Caroline M. S. Lanigan,
Gary Landucci,
Donald N. Forthal,
Paul W. H. I. Parren,
Preston A. Marx
&
Dennis R. Burton
Nature 2007 449(7158) pp:101
Publication Date(Web):2007-09-06
DOI:10.1038/nature06106
Most successful vaccines elicit neutralizing antibodies and this property is a high priority when developing an HIV vaccine1, 2. Indeed, passively administered neutralizing antibodies have been shown to protect against HIV challenge in some of the best available animal models. For example, antibodies given intravenously can protect macaques against intravenous or mucosal SHIV (an HIV/SIV chimaera) challenge and topically applied antibodies can protect macaques against vaginal SHIV challenge3, 4. However, the mechanism(s) by which neutralizing antibodies afford protection against HIV is not understood and, in particular, the role of antibody Fc-mediated effector functions is unclear. Here we report that there is a dramatic decrease in the ability of a broadly neutralizing antibody to protect macaques against SHIV challenge when Fc receptor and complement-binding activities are engineered out of the antibody. No loss of antibody protective activity is associated with the elimination of complement binding alone. Our in vivo results are consistent with in vitro assays indicating that interaction of Fc-receptor-bearing effector cells with antibody-complexed infected cells is important in reducing virus yield from infected cells. Overall, the data suggest the potential importance of activity against both infected cells and free virus for effective protection against HIV.
Co-reporter:Helen Scales;Andrew Balmford;Min Liu;Yvonne Sadovy;Andrea Manica
Science 2006 Vol 313(5787) pp:612-614
Publication Date(Web):04 Aug 2006
DOI:10.1126/science.313.5787.612c
Co-reporter:Dennis R. Burton;Robyn L. Stanfield;Ian A. Wilson
PNAS 2005 102 (42 ) pp:14943-14948
Publication Date(Web):2005-10-18
DOI:10.1073/pnas.0505126102
HIV has evolved many strategies to avoid neutralizing antibody responses, particularly to conserved regions on the external
glycoprotein spikes of the virus. Nevertheless, a small number of antibodies have been evolved by the human immune system
to recognize conserved parts of the glycoproteins, and therefore, have broadly neutralizing cross-strain activities. These
antibodies constitute important tools in the quest to design immunogens that can elicit broadly neutralizing antibodies in
humans and hence contribute to an effective HIV vaccine. Crystallographic analyses of the antibodies, in many cases in an
antigen-complexed form, have revealed novel and, in some instances, remarkable structural adaptations to attain virus recognition.
Antibodies, like HIV, can evolve relatively rapidly through mutation and selection. It seems that the structures of these
broadly neutralizing antibodies bear witness to a heroic struggle between two titans of rapid evolution.
Co-reporter:
Nature Medicine 2004 10(2) pp:133 - 134
Publication Date(Web):
DOI:10.1038/nm0204-133
Co-reporter:
Nature Medicine 2004 10(8) pp:769 - 771
Publication Date(Web):
DOI:10.1038/nm0804-769
Co-reporter:
Nature Immunology 2004 5(3) pp:233 - 236
Publication Date(Web):
DOI:10.1038/ni0304-233
Co-reporter:Gianluca Moroncini;Nnennaya Kanu;Laura Solforosi;Gil Abalos;Glenn C. Telling;Mark Head;James Ironside;Jeremy P. Brockes;R. Anthony Williamson
PNAS 2004 Volume 101 (Issue 28 ) pp:10404-10409
Publication Date(Web):2004-07-13
DOI:10.1073/pnas.0403522101
Prion diseases are closely associated with the conversion of the cellular prion protein (PrPC) to an abnormal conformer (PrPSc) [Prusiner, S. B. (1998) Proc. Natl. Acad. Sci. USA 95, 13363–13383]. Monoclonal antibodies that bind epitopes comprising residues 96–104 and 133–158 of PrPC potently inhibit this process, presumably by preventing heterodimeric association of PrPC and PrPSc, and suggest that these regions of PrPC may be critical components of the PrPC–PrPSc replicative interface. We reasoned that transplanting PrP sequence corresponding to these regions into a suitable carrier
molecule, such as an antibody, could impart specific recognition of disease-associated forms of PrP. To test this hypothesis,
polypeptides containing PrP sequence between residues 89–112 or 136–158 were used to replace the extended heavy chain complementarity-determining
region 3 of an IgG antibody specific for the envelope glycoprotein of HIV-1. Herein the resulting engineered PrP-IgGs are
shown to bind specifically to infective fractions of PrP in mouse, human, and hamster prion-infected tissues, but not to PrPC, other cellular components, or the HIV-1 envelope. PrPSc reactivity was abolished when the sequence of the PrP 89–112 and 136–158 grafts was mutated, scrambled, or N-terminally truncated.
Our findings suggest that residues within the 89–112 and 136–158 segments of PrPC are key components of one face of the PrPC–PrPSc complex. PrPSc-specific antibodies produced by the approach described may find widespread application in the study of prion biology and
replication and in the detection of infectious prions in human and animal materials.
Co-reporter:Daniel A. Calarese;Christopher N. Scanlan;Michael B. Zwick;Songpon Deechongkit;Yusuke Mimura;Renate Kunert;Ping Zhu;Mark R. Wormald;Robyn L. Stanfield;Kenneth H. Roux;Jeffery W. Kelly;Pauline M. Rudd;Raymond A. Dwek;Hermann Katinger;Ian A. Wilson
Science 2003 Vol 300(5628) pp:2065-2071
Publication Date(Web):27 Jun 2003
DOI:10.1126/science.1083182
Abstract
Human antibody 2G12 neutralizes a broad range of human immunodeficiency virus type 1 (HIV-1) isolates by binding an unusually dense cluster of carbohydrate moieties on the “silent” face of the gp120 envelope glycoprotein. Crystal structures of Fab 2G12 and its complexes with the disaccharide Manα1-2Man and with the oligosaccharide Man9GlcNAc2 revealed that two Fabs assemble into an interlocked VH domain-swapped dimer. Further biochemical, biophysical, and mutagenesis data strongly support a Fab-dimerized antibody as the prevalent form that recognizes gp120. The extraordinary configuration of this antibody provides an extended surface, with newly described binding sites, for multivalent interaction with a conserved cluster of oligomannose type sugars on the surface of gp120. The unique interdigitation of Fab domains within an antibody uncovers a previously unappreciated mechanism for high-affinity recognition of carbohydrate or other repeating epitopes on cell or microbial surfaces.
Co-reporter:David Peretz,
R. Anthony Williamson,
Kiotoshi Kaneko,
Julie Vergara,
Estelle Leclerc,
Gerold Schmitt-Ulms,
Ingrid R. Mehlhorn,
Giuseppe Legname,
Mark R. Wormald,
Pauline M. Rudd,
Raymond A. Dwek,
Dennis R. Burton
and
Stanley B. Prusiner
Nature 2001 412(6848) pp:739
Publication Date(Web):
DOI:10.1038/35089090
Prions are the transmissible pathogenic agents responsible for diseases such as scrapie and bovine spongiform encephalopathy. In the favoured model of prion replication, direct interaction between the pathogenic prion protein (PrPSc) template and endogenous cellular prion protein (PrPC) is proposed to drive the formation of nascent infectious prions1, 2. Reagents specifically binding either prion-protein conformer may interrupt prion production by inhibiting this interaction. We examined the ability of several recombinant antibody antigen-binding fragments (Fabs) to inhibit prion propagation in cultured mouse neuroblastoma cells (ScN2a) infected with PrPSc. Here we show that antibodies binding cell-surface PrPC inhibit PrPSc formation in a dose-dependent manner. In cells treated with the most potent antibody, Fab D18, prion replication is abolished and pre-existing PrPSc is rapidly cleared, suggesting that this antibody may cure established infection. The potent activity of Fab D18 is associated with its ability to better recognize the total population of PrPC molecules on the cell surface, and with the location of its epitope on PrPC. Our observations support the use of antibodies in the prevention and treatment of prion diseases and identify a region of PrPC for drug targeting.
Co-reporter:R. Anthony Williamson;Mark P. Burgoon;Gregory P. Owens;Omar Ghausi;Estelle Leclerc;Louise Firme;Sharon Carlson;John Corboy;Paul W. H. I. Parren;Pietro P. Sanna;Donald H. Gilden
PNAS 2001 Volume 98 (Issue 4 ) pp:1793-1798
Publication Date(Web):2001-02-13
DOI:10.1073/pnas.98.4.1793
Multiple sclerosis (MS) is a chronic inflammatory demyelinating
disease of unknown cause that afflicts the central nervous system. MS
is typified by a highly clonally restricted antigen-driven antibody
response that is confined largely to the central nervous system. The
major antigenic targets of this response and the role of antibody in
disease pathogenesis remain unclear. To help resolve these issues, we
cloned the IgG repertoire directly from active plaque and periplaque
regions in MS brain and from B cells recovered from the cerebrospinal
fluid of a patient with MS with subacute disease. We found that
high-affinity anti-DNA antibodies are a major component of the
intrathecal IgG response in the patients with MS that we studied.
Furthermore, we show DNA-specific monoclonal antibodies rescued from
two subjects with MS as well as a DNA-specific antibody rescued from an
individual suffering from systemic lupus erythematosus bound
efficiently to the surface of neuronal cells and oligodendrocytes. For
two of these antibodies, cell-surface recognition was DNA dependent.
Our findings indicate that anti-DNA antibodies may promote important
neuropathologic mechanisms in chronic inflammatory disorders, such as
MS and systemic lupus erythematosus.
Co-reporter:Dennis R. Burton
and
Paul W. H. I. Parren
Nature 2000 408(6812) pp:527
Publication Date(Web):
DOI:10.1038/35046176
A vaccine that protects monkeys against a lethal dose of Ebola virus
has been developed. But there is still a lot to learn about how this vaccine
works before a version that can protect humans is available.
Co-reporter:Dennis R. Burton;Paul W.H.I. Parren
Nature Medicine 2000 6(2) pp:123-125
Publication Date(Web):2000-02-01
DOI:10.1038/72200
Infection with some pathogens induces weak functional antibody responses
that are non-protective, and there has been some skepticism about a role for
antibodies in vaccine design. However, newer data show that antibodies can
protect against infection with these pathogens, and new methods to elicit
production of functional antibodies should be sought.
Co-reporter:Hui Wang;Michelle N. Griffiths;Peter Ghazal
PNAS 2000 Volume 97 (Issue 2 ) pp:847-852
Publication Date(Web):2000-01-18
DOI:10.1073/pnas.97.2.847
We have compared the kinetics of antibody responses in conventional and dendritic cell-targeted immunization by using a model
antigen in mice. Targeting was achieved by linking the reporter antigen (polyclonal goat anti-hamster antibody) to N418, a
hamster mAb that binds to the CD11c molecule on the surface of murine dendritic cells. Intradermal injection of submicrogram
quantities of goat anti-hamster antibody complexed to mAb N418 elicited goat antibody-specific serum IgG in mice. Antigen-specific
IgG titers were detectable by day 5, with titers that ranged from 1:1000 to 1:100,000 by day 7. In contrast, when the goat
antigen was injected alone or in the presence of a hamster antibody control to form nontargeted complexes, goat-specific serum
IgG was undetectable at day 7. Additional control experiments showed that the interaction between the model antigen and mAb
N418 is required for amplification of the serum antibody response. These studies demonstrate that a single-step, facilitated-delivery
of small amounts of protein antigen to dendritic cells in vivo can give very rapid and high antibody responses. The approach may be particularly useful for vaccination immediately before
or just after exposure to a pathogen and may enhance the utility of subunit antigens as immunogens.
Co-reporter:
Nature Medicine 1999 5(2) pp:142-144
Publication Date(Web):
DOI:10.1038/5502
Potent neutralizing antibodies protect monkeys from SHIV challenge, but
will vaccines ever be able to elicit antibody responses this powerful? (pages
204−216)
Co-reporter:Laura M Walker, Dennis R Burton
Current Opinion in Immunology (June 2010) Volume 22(Issue 3) pp:358-366
Publication Date(Web):1 June 2010
DOI:10.1016/j.coi.2010.02.012
Many antiviral vaccines elicit neutralizing antibodies as a correlate of protection. For HIV, given the huge variability of the virus, it is widely believed that the induction of a broadly neutralizing antibody (bNAb) response will be crucial in a successful vaccine against the virus. Unfortunately, despite many efforts, the development of an immunogen that elicits bNAbs remains elusive. However, recent structural studies of HIV-1 Env proteins, generation of novel bNAbs, maturation of technologies for the isolation of further antibodies, insights into the requirements for antibody-mediated protection, and novel vaccination approaches are providing grounds for renewed optimism.
Co-reporter:Raiees Andrabi, James E. Voss, Chi-Hui Liang, Bryan Briney, ... Dennis R. Burton
Immunity (17 November 2015) Volume 43(Issue 5) pp:959-973
Publication Date(Web):17 November 2015
DOI:10.1016/j.immuni.2015.10.014
•All four prototype V2 apex bnAbs recognize a glycan-strand C core epitope on Env•Three prototypes can recognize the core epitope in a germline configuration•Certain HIV isolates were neutralized by these germline prototypes•Env from one of the isolates was stabilized as a trimer for immunogen studiesBroadly neutralizing antibodies (bnAbs) directed to the V2 apex of the HIV envelope (Env) trimer isolated from individual HIV-infected donors potently neutralize diverse HIV strains, but strategies for designing immunogens to elicit bnAbs have not been identified. Here, we compared four prototypes (PG9, CH01, PGT145, and CAP256.VRC26.09) of V2 apex bnAbs and showed that all recognized a core epitope of basic V2 residues and the glycan-N160. Two prototype bnAbs were derived from VH-germlines that were 99% identical and used a common germline D-gene encoded YYD-motif to interact with the V2-epitope. We identified isolates that were neutralized by inferred germline (iGL) versions of three of the prototype bnAbs. Soluble Env derived from one of these isolates was shown to form a well-ordered Env trimer that could serve as an immunogen to initiate a V2-apex bnAb response. These studies illustrate a strategy to transition from panels of bnAbs to vaccine candidates.Download high-res image (179KB)Download full-size image
Co-reporter:Devin Sok, Dennis R. Burton
Immunity (15 November 2016) Volume 45(Issue 5) pp:958-960
Publication Date(Web):15 November 2016
DOI:10.1016/j.immuni.2016.10.033
In this issue of Immunity, Huang et al. (2016) describe an exceptionally broad and potent neutralizing antibody to HIV. This antibody, N6, is capable of neutralizing up to 98% of global isolates with a potent median IC50 of 0.04 μg/mL, making it the current “best-in-class” for bNAbs targeting the CD4 binding site.