Co-reporter:Natarajan Sathiyamoorthy Venkataramanan, Royoji Sahara, Hiroshi Mizuseki and Yoshiyuki Kawazoe
The Journal of Physical Chemistry A 2010 Volume 114(Issue 15) pp:5049-5057
Publication Date(Web):March 24, 2010
DOI:10.1021/jp100459c
Using the first principles method, we study the growth behavior and electronic and magnetic properties of TiNin (n = 1−12) clusters to clarify the effect of Ti modulation on the nickel nanostructures. Furthermore, chemisorption of H2 was studied to understand the chemical reactivity of H2 on the small Ni- and Ti-doped Ni clusters. The calculations are performed using the plane wave pseudopotential approach under the density functional theory and generalized gradient approximation for the exchange and correlation functional. The optimized geometries of TiNin−1 clusters indicate that the substitution of Ti brings a substantial structural reconstruction from 3D structure to a layer structure in which Ti atom is found to coordinate with Ni atoms to a maximum extent. This is accompanied by a significant enhancement in binding energies and reduction in chemical reactivity. Furthermore, the magnetic moments of the small Ti-doped Ni clusters are quenched because of the antiferromagnetic alignment of the Ti electrons. The lowest-energy structure of H2 chemisorbed on Ni clusters shows that hydrogen prefers to adsorb on the edge site with two hydrogen atoms on these clusters in neighboring sites as the preferred arrangement. The incorporation of Ti atom improves the chemisorption energy of Ni clusters. Bader charge analysis indicates that with the formation of metal hydride, the H atoms withdraw charges from the metal centers, making them lose an electron, and carry a positive charge over them. Furthermore, Ti doping is found to enhance the chemical reactivity of Ni clusters.
Co-reporter:Ambigapathy Suvitha
Journal of Inclusion Phenomena and Macrocyclic Chemistry 2010 Volume 66( Issue 3-4) pp:213-218
Publication Date(Web):2010 April
DOI:10.1007/s10847-009-9601-2
Geometries, formation and electronic properties of cucurbit[n]uril-oxaliplatin n = 5–8, host-guest complexes are investigated with DFT calculations. The formation of inclusion complexes of CB[n]-oxaliplatin are facile in CB[n] n = 6–8. In the complex, the cyclohexyl group is found to be deep inside the cavity, with the formation of a hydrogen bonding between the portal oxygen atoms and the amine nitrogen of the oxaliplatin guest. NBO analysis shows the transfer of charge from the metal center to the CB[7] unit and the existence of hydrogen bonding between the oxygen portal and amine nitrogen. The HOMO orbital is localized on the carboxylate group and the LUMO orbital are localized on the cucurbituril unit in CB[7]-oxaliplatin complex. The strength of the interaction determined here reflects the ability of CB[n] to act as a host for suitably oxaliplatin guests, even in aqueous solution.
Co-reporter:Natarajan Sathiyamoorthy Venkataramanan, Mohammad Khazaei, Ryoji Sahara, Hiroshi Mizuseki, Yoshiyuki Kawazoe
Chemical Physics 2009 Volume 359(1–3) pp:173-178
Publication Date(Web):18 May 2009
DOI:10.1016/j.chemphys.2009.04.001
Abstract
Absorption of hydrogen molecules on Nickel and Rhodium-doped hexagonal boron nitride (BN) sheet is investigated by using the first principle method. The most stable site for the Ni atom was the on top side of nitrogen atom, while Rh atoms deservers a hollow site over the hexagonal BN sheet. The first hydrogen molecule was absorbed dissociatively over Rh atom, and molecularly on Ni doped BN sheet. Both Ni and Rh atoms are capable to absorb up to three hydrogen molecules chemically and the metal atom to BN sheet distance increases with the increase in the number of hydrogen molecules. Finally, our calculations offer explanation for the nature of bonding between the metal atom and the hydrogen molecules, which is due to the hybridization of metal d orbital with the hydrogen s orbital. These calculation results can be useful to understand the nature of interaction between the doped metal and the BN sheet, and their interaction with the hydrogen molecules.
Co-reporter:Natarajan Sathiyamoothy Venkataramanan;Seenivasan Rajagopal;Ambigapathy Suvitha;Yoshiyuki Kawazoe
Journal of Physical Organic Chemistry 2009 Volume 22( Issue 7) pp:650-660
Publication Date(Web):
DOI:10.1002/poc.1496
Abstract
The mechanism of oxygenation of organic sulfide by oxo(salen)chromium(V) complexes has been studied experimentally and by the density functional theory (DFT) method. Spectral studies show DMSO ligands bind with the Cr center of oxidant and the adduct formed was responsible for the oxygenation reaction. The reaction was first order with respect to oxidant and substrate. Hammett plot shows the formation of positive charge over sulfur atom and the development of negative charge over the oxidant in the transition state (TS). For the substrate ρ values are in the range from −1.5 to −1.8. The geometry has been correctly predicted by the B3LYP function, and it gives better results for spin states, harmonic frequencies, and thermodynamic energies for the system. DFT results indicate the existence of oxo(salen)chromium(V) and Cr(III)–salen at doublet and quartet as ground state, respectively. Binding of donor ligand weakens the CrO bond. TS structures show an increase in the negative charge and spin density over Cr atom indicating the involvement of spin inversion and radical character. The low activation energy and high free energy change are responsible for the enhancement of the reaction rate and product yield in the presence of DMSO donor ligand, while the rebound mechanism and the direction of substrate approach perpendicular to the salen plane are responsible for their higher selectivity. From this combined study, a mechanism involving consecutive two-electron transfer from the oxo(salen)chromium(V) ion to the electron-rich sulfur atom is proposed. Copyright © 2008 John Wiley & Sons, Ltd.
Co-reporter:Natarajan Sathiyamoorthy Venkataramanan, Ryoji Sahara, Hiroshi Mizuseki and Yoshiyuki Kawazoe
The Journal of Physical Chemistry C 2008 Volume 112(Issue 49) pp:19676-19679
Publication Date(Web):November 14, 2008
DOI:10.1021/jp808899t
In this work, density functional theory (DFT) was performed to investigate hydrogen storage in Li-functionalized p-tert-butyl calixarene (LTBC). Calculations based on DFT show that Li-functionalized calixarene significantly improves the average binding energy of hydrogen molecules. Each Li-functionalized calixarene molecules was found to hold four hydrogen molecules inside its cavity, yielding an approximate gravimetric density of ∼ 10 wt %. Furthermore, the ab initio molecular dynamics simulations show that LTBC molecules are stable up to 200 K. Finally, the pair distribution function calculated for LTBC with four hydrogen molecules inside the cavity shows that the hydrogen molecules are stable inside the cavity until 100 K.