Co-reporter:Shannon Rivera, Justin L. Burns, Gregory E. Vansuch, Bryant Chica, Emily E. Weinert
Journal of Inorganic Biochemistry 2016 Volume 164() pp:70-76
Publication Date(Web):November 2016
DOI:10.1016/j.jinorgbio.2016.08.016
•Globin dimerization of GCS proteins results in biphasic O2 dissociation kinetics.•Distal serine is involved in conformation(s) leading to biphasic O2 dissociation.•Globin dimerization is a determinant of full-length GCS oligomerization states.Globin coupled sensors (GCS) are O2-sensing proteins used by bacteria to monitor the surrounding gaseous environment. To investigate the biphasic O2 dissociation kinetics observed for full-length GCS proteins, isolated globin domains from Pectobacterium carotovorum ssp. carotovorum (PccGlobin), and Bordetella pertussis (BpeGlobin), have been characterized. PccGlobin is found to be dimeric, while BpeGlobin is monomeric, indicating key differences in the globin domain dimer interface. Through characterization of wild type globin domains and globin variants with mutations at the dimer interface and within the distal pocket, dimerization of the globin domain is demonstrated to correlate with biphasic dissociation kinetics. Furthermore, a distal pocket tyrosine is identified as the primary hydrogen bond donor, while a secondary hydrogen bond donor within the distal heme pocket is involved in conformation(s) that lead to the second O2 dissociation rate. These findings highlight the role of the globin dimer interface in controlling properties of both the heme pocket and full-length GCS proteins.Bacteria use globin coupled sensors (GCS) to sense and response to changing oxygen levels. Globin domains with high amino acid similarity display differential oligomerization and oxygen binding kinetics. Dimerization of the globin domain within GCS proteins results in changes to the heme pocket, altering the conformation and oxygen dissociation kinetics.
Co-reporter:Justin L. Burns, Shannon Rivera, D. Douglas Deer, Shawnna C. Joynt, David Dvorak, and Emily E. Weinert
Biochemistry 2016 Volume 55(Issue 48) pp:
Publication Date(Web):November 14, 2016
DOI:10.1021/acs.biochem.6b00526
Bacteria sense their environment to alter phenotypes, including biofilm formation, to survive changing conditions. Heme proteins play important roles in sensing the bacterial gaseous environment and controlling the switch between motile and sessile (biofilm) states. Globin coupled sensors (GCS), a family of heme proteins consisting of a globin domain linked by a central domain to an output domain, are often found with diguanylate cyclase output domains that synthesize c-di-GMP, a major regulator of biofilm formation. Characterization of diguanylate cyclase-containing GCS proteins from Bordetella pertussis and Pectobacterium carotovorum demonstrated that cyclase activity is controlled by ligand binding to the heme within the globin domain. Both O2 binding to the heme within the globin domain and c-di-GMP binding to a product-binding inhibitory site (I-site) within the cyclase domain control oligomerization states of the enzymes. Changes in oligomerization state caused by c-di-GMP binding to the I-site also affect O2 kinetics within the globin domain, suggesting that shifting the oligomer equilibrium leads to broad rearrangements throughout the protein. In addition, mutations within the I-site that eliminate product inhibition result in changes to the accessible oligomerization states and decreased catalytic activity. These studies provide insight into the mechanism by which ligand binding to the heme and I-site controls activity of GCS proteins and suggests a role for oligomerization-dependent activity in vivo.
Co-reporter:Justin L. Burns, D. Douglas Deer and Emily E. Weinert
Molecular BioSystems 2014 vol. 10(Issue 11) pp:2823-2826
Publication Date(Web):22 Aug 2014
DOI:10.1039/C4MB00366G
Bacterial biofilm formation is regulated by enzymes, such as diguanylate cyclases, that respond to environmental signals and alter c-di-GMP levels. Diguanylate cyclase activity of two globin coupled sensors is shown to be regulated by gaseous ligands, with cyclase activity and O2 dissociation affected by protein oligomeric state.