Co-reporter:Roberto J. Brea, Christian M. Cole, Brent R. Lyda, Libin Ye, R. Scott Prosser, Roger K. Sunahara, and Neal K. Devaraj
Journal of the American Chemical Society March 15, 2017 Volume 139(Issue 10) pp:3607-3607
Publication Date(Web):March 6, 2017
DOI:10.1021/jacs.6b12830
Cell transmembrane receptors play a key role in the detection of environmental stimuli and control of intracellular communication. G protein-coupled receptors constitute the largest transmembrane protein family involved in cell signaling. However, current methods for their functional reconstitution in biomimetic membranes remain both challenging and limited in scope. Herein, we describe the spontaneous reconstitution of adenosine A2A receptor (A2AR) during the de novo formation of synthetic liposomes via native chemical ligation. The approach takes advantage of a nonenzymatic and chemoselective method to rapidly generate A2AR embedded phospholiposomes from receptor solubilized in n-dodecyl-β-d-maltoside analogs. In situ lipid synthesis for protein reconstitution technology proceeds in the absence of dialysis and/or detergent absorbents, and A2AR assimilation into synthetic liposomes can be visualized by microscopy and probed by radio-ligand binding.
Co-reporter:Neal K. Devaraj
The Journal of Organic Chemistry June 16, 2017 Volume 82(Issue 12) pp:5997-5997
Publication Date(Web):May 3, 2017
DOI:10.1021/acs.joc.7b00604
Cells produce lipid membranes de novo through a complex sequence of enzymatic reactions that are difficult to reconstitute in a minimal system. We set out to take a different approach and mimic the synthesis of phospholipids using abiotic but highly selective bioconjugation reactions. Here, I outline several of our group’s recent advances in exploring chemoselective reactions for stitching together lipid fragments to form membrane-forming lipids from non-membrane-forming precursors. Rapid chemical reactions can be harnessed to achieve facile de novo synthesis of lipid membranes, and spontaneous membrane formation can be applied for the reconstitution of membrane proteins, encapsulation and concentration of nanomaterials, and the study of lipid membrane remodeling. I conclude by briefly outlining future challenges and opportunities.
Co-reporter:Cun Yu Zhou;Seth C. Alexander
Chemical Science (2010-Present) 2017 vol. 8(Issue 10) pp:7169-7173
Publication Date(Web):2017/09/25
DOI:10.1039/C7SC03150E
Investigating the many roles RNA plays in cellular regulation and function has increased demand for tools to explore RNA tracking and localization within cells. Our recently reported RNA-TAG (transglycosylation at guanine) approach uses an RNA-modifying enzyme, tRNA-guanine transglycosylase (TGT), to accomplish covalent labeling of an RNA of interest with fluorescent tracking agents in a highly selective and efficient manner. Unfortunately, labeling by this method currently suffers from a high nonspecific fluorescent background and is currently unsuitable for imaging RNA within complex cellular environments. Herein we report the design and synthesis of novel fluorogenic thiazole orange probes that significantly lower nonspecific binding and background fluorescence and, as a result, provide up to a 100-fold fluorescence intensity increase after labeling. Using these fluorogenic labeling agents, we were able to image mRNA expressed in Chinese Hamster Ovary cells in a wash-free manner.
Co-reporter:Ahanjit Bhattacharya;Roberto J. Brea
Chemical Science (2010-Present) 2017 vol. 8(Issue 12) pp:7912-7922
Publication Date(Web):2017/11/20
DOI:10.1039/C7SC02339A
The assembly of artificial cells provides a novel strategy to reconstruct life's functions and shed light on how life emerged on Earth and possibly elsewhere. A major challenge to the development of artificial cells is the establishment of simple methodologies to mimic native membrane generation. An ambitious strategy is the bottom-up approach, which aims to systematically control the assembly of highly ordered membrane architectures with defined functionality. This perspective will cover recent advances and the current state-of-the-art of minimal lipid architectures that can faithfully reconstruct the structure and function of living cells. Specifically, we will overview work related to the de novo formation and growth of biomimetic membranes. These studies give us a deeper understanding of the nature of living systems and bring new insights into the origin of cellular life.
Co-reporter:Haoxing Wu, Seth C. Alexander, Shuaijiang Jin, and Neal K. Devaraj
Journal of the American Chemical Society 2016 Volume 138(Issue 36) pp:11429-11432
Publication Date(Web):August 10, 2016
DOI:10.1021/jacs.6b01625
There is significant interest in developing methods that visualize and detect RNA. Bioorthogonal template-driven tetrazine ligations could be a powerful route to visualizing nucleic acids in native cells, yet past work has been limited with respect to the diversity of fluorogens that can be activated via a tetrazine reaction. Herein we report a novel bioorthogonal tetrazine uncaging reaction that harnesses tetrazine reactivity to unmask vinyl ether caged fluorophores spanning the visible spectrum, including a near-infrared (NIR)-emitting cyanine dye. Vinyl ether caged fluorophores and tetrazine partners are conjugated to high-affinity antisense nucleic acid probes, which show highly selective fluorogenic reactivity when annealed to their respective target RNA sequences. A target sequence in the 3′ untranslated region of an expressed mRNA was detected in live cells employing appropriate nucleic acid probes bearing a tetrazine-reactive NIR fluorogen. Given the expansion of tetrazine fluorogenic chemistry to NIR dyes, we believe highly selective proximity-induced fluorogenic tetrazine reactions could find broad uses in illuminating endogenous biomolecules in cells and tissues.
Co-reporter:M. D. Hardy, D. Konetski, C. N. Bowman and N. K. Devaraj
Organic & Biomolecular Chemistry 2016 vol. 14(Issue 24) pp:5555-5558
Publication Date(Web):2016/02/22
DOI:10.1039/C6OB00290K
As more methodologies for generating and manipulating biomimetic cellular systems are developed, opportunities arise for combining different methods to create more complex synthetic biological constructs. This necessitates an increasing need for tools to selectively trigger individual methodologies. Here we demonstrate ruthenium tris-bipyridine mediated photoredox triggering of the copper catalyzed alkyne azide cycloaddition reaction (CuAAC), resulting in the synthesis of biomimetic phospholipids in situ, and subsequent membrane assembly. The use of a ruthenium–copper electron transport chain to trigger phospholipid assembly opens up future opportunities for spatiotemporal synthesis of membranes.
Co-reporter:Sampreeti Chowdhuri;Christian M. Cole ; Neal K. Devaraj
ChemBioChem 2016 Volume 17( Issue 10) pp:886-889
Publication Date(Web):
DOI:10.1002/cbic.201500643
Abstract
Liposomes form spontaneously by the assimilation of phospholipids, the primary component of cell membranes. Due to their unique ability to form selectively permeable bilayers in situ, they are widely used as nanocarriers for drug and small-molecule delivery. However, there is a lack of straightforward methodologies to encapsulate living microorganisms. Here we demonstrate the successful encapsulation of whole cells in phospholipid vesicles by using the inverse-emulsion technique of generating unilamellar vesicles. This method of liposome preparation allows for a facile encapsulation of large biomaterials that previously was not easily attainable. Using Escherichia coli as a model organism, we found that liposomes can protect the bacterium against external protease degradation and from harsh biological environments. Liposomes prepared by the inverse-emulsion method were also capable of encapsulating yeast and were found to be naturally susceptible to hydrolysis by enzymes such as phospholipases, thus highlighting their potential role as cell delivery carriers.
Co-reporter:Roberto J. Brea;Andrew K. Rudd;
Proceedings of the National Academy of Sciences 2016 113(31) pp:8589-8594
Publication Date(Web):July 20, 2016
DOI:10.1073/pnas.1605541113
Co-reporter:Fabian Ehret; Haoxing Wu; Seth C. Alexander
Journal of the American Chemical Society 2015 Volume 137(Issue 28) pp:8876-8879
Publication Date(Web):July 1, 2015
DOI:10.1021/jacs.5b03371
We demonstrate that bioorthogonal tetrazine ligations can be utilized to rapidly modify electrode surfaces, both with redox probes and enzymes. Furthermore, we show that the redox-active nature of 1,2,4,5-tetrazines can be exploited to gain electrochemical control over surface modification. To our knowledge this is the first demonstration of controlling a tetrazine ligation by changing the redox state of one of the reactants. We utilize the redox-switchable feature of tetrazine ligations for the site-selective functionalization of a 10 μm spaced interdigitated array of microelectrodes. In addition, we were able to achieve potential controlled ligation of the redox enzyme horseradish peroxidase to a macroscopic planar electrode. The rapid kinetics, bioorthogonal reactivity, and electrochemical control provided by tetrazine ligations should lead to numerous applications related to electrode functionalization.
Co-reporter:Seth C. Alexander; Kayla N. Busby; Christian M. Cole; Cun Yu Zhou
Journal of the American Chemical Society 2015 Volume 137(Issue 40) pp:12756-12759
Publication Date(Web):September 22, 2015
DOI:10.1021/jacs.5b07286
We demonstrate the site-specific incorporation of nucleobase derivatives bearing fluorophores or affinity labels into a short RNA stem loop recognition motif by exchange of a guanine residue. The RNA-TAG (transglycosylation at guanosine) is carried out by a bacterial (E. coli) tRNA guanine transglycosylase (TGT), whose natural substrate is the nitrogenous base PreQ1. Remarkably, we have successfully incorporated large functional groups including biotin, BODIPY, thiazole orange, and Cy7 through a polyethylene glycol linker attached to the exocyclic amine of PreQ1. Larger RNAs, such as mRNA transcripts, can be site-specifically labeled if they possess the 17-nucleotide hairpin recognition motif. The RNA-TAG methodology could facilitate the detection and manipulation of RNA molecules by enabling the direct incorporation of functional artificial nucleobases using a simple hairpin recognition element.
Co-reporter:Andrew K. Rudd; Joan M. Valls Cuevas
Journal of the American Chemical Society 2015 Volume 137(Issue 15) pp:4884-4887
Publication Date(Web):April 1, 2015
DOI:10.1021/jacs.5b00040
The natural mechanisms that direct proteins to membranes are typically complex, requiring multiple steps and accessory components. It would be advantageous to develop simplified methods to direct proteins of interest to phospholipid membranes in a single step. Here we report a modular method for membrane localization of proteins by using chemically modified phospholipid anchors capable of covalent attachment to O6-methylguanine DNA methyltransferase (SNAP-tag) fusion proteins. To our knowledge, this is the first use of SNAP-tag reactions to modify benzylguanine-functionalized lipid membranes. We demonstrate that photocaged lipid precursors enable light-triggered spatial and temporal control over protein localization. The anchoring system is compatible with cell-free expression, allowing for genetic targeting of proteins to lipid membranes of giant unilamellar vesicles. This technique can be used to control membrane curvature effects, similar to what has been previously observed with certain membrane-bound proteins. This work addresses a current need in synthetic biology for simplified and robust methods to control membrane localization of expressed proteins and shows promise as a general tool for protein targeting to lipid vesicles and cellular membranes.
Co-reporter:Cun Yu Zhou, Haoxing Wu and Neal Krishna Devaraj
Chemical Science 2015 vol. 6(Issue 7) pp:4365-4372
Publication Date(Web):19 May 2015
DOI:10.1039/C5SC00653H
Phospholipids and glycolipids constitute an essential part of biological membranes, and are of tremendous fundamental and practical interest. Unfortunately, the preparation of functional phospholipids, or synthetic analogs, is often synthetically challenging. Here we utilize thiol-yne click chemistry methodology to gain access to phospho- and glycolipid analogs. Alkynyl hydrophilic head groups readily photoreact with numerous thiol modified lipid tails to yield the appropriate dithioether phospho- or glycolipids. The resulting structures closely resemble the structure and function of native diacylglycerolipids. Dithioether phosphatidylcholines (PCs) are suitable for forming giant unilamellar vesicles (GUV), which can be used as vessels for cell-free expression systems. The unnatural thioether linkages render the lipids resistant to phospholipase A2 hydrolysis. We utilize the improved stability of these lipids to control the shrinkage of GUVs composed of a mixture of 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) and dioleyl-dithioether PC, concentrating encapsulated nanoparticles. We imagine that these readily accessible lipids could find a number of applications as natural lipid substitutes.
Co-reporter:Christian M. Cole;Dr. Roberto J. Brea;Young Hun Kim;Michael D. Hardy; Jerry Yang; Neal K. Devaraj
Angewandte Chemie International Edition 2015 Volume 54( Issue 43) pp:12738-12742
Publication Date(Web):
DOI:10.1002/anie.201504339
Abstract
Transmembrane proteins are critical for signaling, transport, and metabolism, yet their reconstitution in synthetic membranes is often challenging. Non-enzymatic and chemoselective methods to generate phospholipid membranes in situ would be powerful tools for the incorporation of membrane proteins. Herein, the spontaneous reconstitution of functional integral membrane proteins during the de novo synthesis of biomimetic phospholipid bilayers is described. The approach takes advantage of bioorthogonal coupling reactions to generate proteoliposomes from micelle-solubilized proteins. This method was successfully used to reconstitute three different transmembrane proteins into synthetic membranes. This is the first example of the use of non-enzymatic chemical synthesis of phospholipids to prepare proteoliposomes.
Co-reporter:Dr. Roberto J. Brea;Michael D. Hardy ; Neal K. Devaraj
Chemistry - A European Journal 2015 Volume 21( Issue 36) pp:12564-12570
Publication Date(Web):
DOI:10.1002/chem.201501229
Abstract
There has been increasing interest in utilizing bottom-up approaches to develop synthetic cells. A popular methodology is the integration of functionalized synthetic membranes with biological systems, producing “hybrid” artificial cells. This Concept article covers recent advances and the current state-of-the-art of such hybrid systems. Specifically, we describe minimal supramolecular constructs that faithfully mimic the structure and/or function of living cells, often by controlling the assembly of highly ordered membrane architectures with defined functionality. These studies give us a deeper understanding of the nature of living systems, bring new insights into the origin of cellular life, and provide novel synthetic chassis for advancing synthetic biology.
Co-reporter:Michael D. Hardy;Jun Yang;Christian M. Cole;Jangir Selimkhanov;Lev S. Tsimring
PNAS 2015 Volume 112 (Issue 27 ) pp:8187-8192
Publication Date(Web):2015-07-07
DOI:10.1073/pnas.1506704112
Cell membranes are dynamic structures found in all living organisms. There have been numerous constructs that model phospholipid
membranes. However, unlike natural membranes, these biomimetic systems cannot sustain growth owing to an inability to replenish
phospholipid-synthesizing catalysts. Here we report on the design and synthesis of artificial membranes embedded with synthetic,
self-reproducing catalysts capable of perpetuating phospholipid bilayer formation. Replacing the complex biochemical pathways
used in nature with an autocatalyst that also drives lipid synthesis leads to the continual formation of triazole phospholipids
and membrane-bound oligotriazole catalysts from simpler starting materials. In addition to continual phospholipid synthesis
and vesicle growth, the synthetic membranes are capable of remodeling their physical composition in response to changes in
the environment by preferentially incorporating specific precursors. These results demonstrate that complex membranes capable
of indefinite self-synthesis can emerge when supplied with simpler chemical building blocks.
Co-reporter:Christian M. Cole;Dr. Roberto J. Brea;Young Hun Kim;Michael D. Hardy; Jerry Yang; Neal K. Devaraj
Angewandte Chemie 2015 Volume 127( Issue 43) pp:12929-12933
Publication Date(Web):
DOI:10.1002/ange.201504339
Abstract
Transmembrane proteins are critical for signaling, transport, and metabolism, yet their reconstitution in synthetic membranes is often challenging. Non-enzymatic and chemoselective methods to generate phospholipid membranes in situ would be powerful tools for the incorporation of membrane proteins. Herein, the spontaneous reconstitution of functional integral membrane proteins during the de novo synthesis of biomimetic phospholipid bilayers is described. The approach takes advantage of bioorthogonal coupling reactions to generate proteoliposomes from micelle-solubilized proteins. This method was successfully used to reconstitute three different transmembrane proteins into synthetic membranes. This is the first example of the use of non-enzymatic chemical synthesis of phospholipids to prepare proteoliposomes.
Co-reporter:Haoxing Wu ; Brandon T. Cisneros ; Christian M. Cole
Journal of the American Chemical Society 2014 Volume 136(Issue 52) pp:17942-17945
Publication Date(Web):December 12, 2014
DOI:10.1021/ja510839r
Tetrazine ligations have proven to be a powerful bioorthogonal technique for the detection of many labeled biomolecules, but the ligating nature of these reactions can limit reaction turnover in templated chemistry. We have developed a transfer reaction between 7-azabenzonorbornadiene derivatives and fluorogenic tetrazines that facilitates turnover amplification of the fluorogenic response in nucleic acid-templated reactions. Fluorogenic tetrazine-mediated transfer (TMT) reaction probes can be used to detect DNA and microRNA (miRNA) templates to 0.5 and 5 pM concentrations, respectively. The endogenous oncogenic miRNA target mir-21 could be detected in crude cell lysates and detected by imaging in live cells. Remarkably, the technique is also able to differentiate between miRNA templates bearing a single mismatch with high signal to background. We imagine that TMT reactions could find wide application for amplified fluorescent detection of clinically relevant nucleic acid templates.
Co-reporter:Brandon Nichols, Zhengtao Qin, Jun Yang, David R. Vera and Neal K. Devaraj
Chemical Communications 2014 vol. 50(Issue 40) pp:5215-5217
Publication Date(Web):21 Feb 2014
DOI:10.1039/C3CC49530B
We have developed a 68Ga metal chelating bioorthogonal tetrazine dextran probe that is highly reactive with trans-cyclooctene modified monoclonal antibodies for multistep imaging applications. Confocal microscopy and positron emission tomography (PET) were used to characterize the dextran probe in vitro and in vivo.
Co-reporter:Dr. Haoxing Wu;Dr. Jun Yang;Dr. Jolita &x160;e&x10d;kut&x117; ; Neal K. Devaraj
Angewandte Chemie 2014 Volume 126( Issue 23) pp:5915-5919
Publication Date(Web):
DOI:10.1002/ange.201400135
Abstract
In spite of the wide application potential of 1,2,4,5-tetrazines, particularly in live-cell and in vivo imaging, a major limitation has been the lack of practical synthetic methods. Here we report the in situ synthesis of (E)-3-substituted 6-alkenyl-1,2,4,5-tetrazine derivatives through an elimination–Heck cascade reaction. By using this strategy, we provide 24 examples of π-conjugated tetrazine derivatives that can be conveniently prepared from tetrazine building blocks and related halides. These include tetrazine analogs of biological small molecules, highly conjugated buta-1,3-diene-substituted tetrazines, and a diverse array of fluorescent probes suitable for live-cell imaging. These highly conjugated probes show very strong fluorescence turn-on (up to 400-fold) when reacted with dienophiles such as cyclopropenes and trans-cyclooctenes, and we demonstrate their application for live-cell imaging. This work provides an efficient and practical synthetic methodology for tetrazine derivatives and will facilitate the application of conjugated tetrazines, particularly as fluorogenic probes for live-cell imaging.
Co-reporter:Dr. Roberto J. Brea;Christian M. Cole ; Neal K. Devaraj
Angewandte Chemie 2014 Volume 126( Issue 51) pp:14326-14329
Publication Date(Web):
DOI:10.1002/ange.201408538
Abstract
Phospholipid vesicles are of intense fundamental and practical interest, yet methods for their de novo generation from reactive precursors are limited. A non-enzymatic and chemoselective method to spontaneously generate phospholipid membranes from water-soluble starting materials would be a powerful tool for generating vesicles and studying lipid membranes. Here we describe the use of native chemical ligation (NCL) to rapidly prepare phospholipids spontaneously from thioesters. While NCL is one of the most popular tools for synthesizing proteins and nucleic acids, to our knowledge this is the first example of using NCL to generate phospholipids de novo. The lipids are capable of in situ synthesis and self-assembly into vesicles that can grow to several microns in diameter. The selectivity of the NCL reaction makes in situ membrane formation compatible with biological materials such as proteins. This work expands the application of NCL to the formation of phospholipid membranes.
Co-reporter:Dr. Haoxing Wu;Dr. Jun Yang;Dr. Jolita &x160;e&x10d;kut&x117; ; Neal K. Devaraj
Angewandte Chemie International Edition 2014 Volume 53( Issue 23) pp:5805-5809
Publication Date(Web):
DOI:10.1002/anie.201400135
Abstract
In spite of the wide application potential of 1,2,4,5-tetrazines, particularly in live-cell and in vivo imaging, a major limitation has been the lack of practical synthetic methods. Here we report the in situ synthesis of (E)-3-substituted 6-alkenyl-1,2,4,5-tetrazine derivatives through an elimination–Heck cascade reaction. By using this strategy, we provide 24 examples of π-conjugated tetrazine derivatives that can be conveniently prepared from tetrazine building blocks and related halides. These include tetrazine analogs of biological small molecules, highly conjugated buta-1,3-diene-substituted tetrazines, and a diverse array of fluorescent probes suitable for live-cell imaging. These highly conjugated probes show very strong fluorescence turn-on (up to 400-fold) when reacted with dienophiles such as cyclopropenes and trans-cyclooctenes, and we demonstrate their application for live-cell imaging. This work provides an efficient and practical synthetic methodology for tetrazine derivatives and will facilitate the application of conjugated tetrazines, particularly as fluorogenic probes for live-cell imaging.
Co-reporter:Dr. Roberto J. Brea;Christian M. Cole ; Neal K. Devaraj
Angewandte Chemie International Edition 2014 Volume 53( Issue 51) pp:14102-14105
Publication Date(Web):
DOI:10.1002/anie.201408538
Abstract
Phospholipid vesicles are of intense fundamental and practical interest, yet methods for their de novo generation from reactive precursors are limited. A non-enzymatic and chemoselective method to spontaneously generate phospholipid membranes from water-soluble starting materials would be a powerful tool for generating vesicles and studying lipid membranes. Here we describe the use of native chemical ligation (NCL) to rapidly prepare phospholipids spontaneously from thioesters. While NCL is one of the most popular tools for synthesizing proteins and nucleic acids, to our knowledge this is the first example of using NCL to generate phospholipids de novo. The lipids are capable of in situ synthesis and self-assembly into vesicles that can grow to several microns in diameter. The selectivity of the NCL reaction makes in situ membrane formation compatible with biological materials such as proteins. This work expands the application of NCL to the formation of phospholipid membranes.
Co-reporter:Dr. Jun Yang;Dr. Yong Liang;Dr. Jolita &x160;e&x10d;kut&x117;; K. N. Houk; Neal K. Devaraj
Chemistry - A European Journal 2014 Volume 20( Issue 12) pp:3365-3375
Publication Date(Web):
DOI:10.1002/chem.201304225
Abstract
Substituted cyclopropenes have recently attracted attention as stable “mini-tags” that are highly reactive dienophiles with the bioorthogonal tetrazine functional group. Despite this interest, the synthesis of stable cyclopropenes is not trivial and their reactivity patterns are poorly understood. Here, the synthesis and comparison of the reactivity of a series of 1-methyl-3-substituted cyclopropenes with different functional handles is described. The rates at which the various substituted cyclopropenes undergo Diels–Alder cycloadditions with 1,2,4,5-tetrazines were measured. Depending on the substituents, the rates of cycloadditions vary by over two orders of magnitude. The substituents also have a dramatic effect on aqueous stability. An outcome of these studies is the discovery of a novel 3-amidomethyl substituted methylcyclopropene tag that reacts twice as fast as the fastest previously disclosed 1-methyl-3-substituted cyclopropene while retaining excellent aqueous stability. Furthermore, this new cyclopropene is better suited for bioconjugation applications and this is demonstrated through using DNA templated tetrazine ligations. The effect of tetrazine structure on cyclopropene reaction rate was also studied. Surprisingly, 3-amidomethyl substituted methylcyclopropene reacts faster than trans-cyclooctenol with a sterically hindered and extremely stable tert-butyl substituted tetrazine. Density functional theory calculations and the distortion/interaction analysis of activation energies provide insights into the origins of these reactivity differences and a guide to the development of future tetrazine coupling partners. The newly disclosed cyclopropenes have kinetic and stability advantages compared to previously reported dienophiles and will be highly useful for applications in organic synthesis, bioorthogonal reactions, and materials science.
Co-reporter:Christian M. Cole;Dr. Jun Yang;Dr. Jolita &x160;e&x10d;kut&x117; ; Neal K. Devaraj
ChemBioChem 2013 Volume 14( Issue 2) pp:205-208
Publication Date(Web):
DOI:10.1002/cbic.201200719
Co-reporter:Dr. Jun Yang;Dr. Mark R. Karver;Weilong Li;Swagat Sahu; Neal K. Devaraj
Angewandte Chemie International Edition 2012 Volume 51( Issue 21) pp:5222-5225
Publication Date(Web):
DOI:10.1002/anie.201201117
Co-reporter:Dr. Jun Yang;Dr. Jolita &x160;e&x10d;kut&x117;;Christian M. Cole ; Neal K. Devaraj
Angewandte Chemie International Edition 2012 Volume 51( Issue 30) pp:7476-7479
Publication Date(Web):
DOI:10.1002/anie.201202122
Co-reporter:Dr. Jun Yang;Dr. Jolita &x160;e&x10d;kut&x117;;Christian M. Cole ; Neal K. Devaraj
Angewandte Chemie 2012 Volume 124( Issue 30) pp:7594-7597
Publication Date(Web):
DOI:10.1002/ange.201202122
Co-reporter:Dr. Jun Yang;Dr. Mark R. Karver;Weilong Li;Swagat Sahu; Neal K. Devaraj
Angewandte Chemie 2012 Volume 124( Issue 21) pp:5312-5315
Publication Date(Web):
DOI:10.1002/ange.201201117
Co-reporter:Neal K. Devaraj and Ralph Weissleder
Accounts of Chemical Research 2011 Volume 44(Issue 9) pp:816
Publication Date(Web):May 31, 2011
DOI:10.1021/ar200037t
Disease mechanisms are increasingly being resolved at the molecular level. Biomedical success at this scale creates synthetic opportunities for combining specifically designed orthogonal reactions in applications such as imaging, diagnostics, and therapy. For practical reasons, it would be helpful if bioorthogonal coupling reactions proceeded with extremely rapid kinetics (k > 103 M–1 s–1) and high specificity. Improving kinetics would minimize both the time and amount of labeling agent required to maintain high coupling yields. In this Account, we discuss our recent efforts to design extremely rapid bioorthogonal coupling reactions between tetrazines and strained alkenes.These selective reactions were first used to covalently couple conjugated tetrazine near-infrared-emitting fluorophores to dienophile-modifed extracellular proteins on living cancer cells. Confocal fluorescence microscopy demonstrated efficient and selective labeling, and control experiments showed minimal background fluorescence. Multistep techniques were optimized to work with nanomolar concentrations of labeling agent over a time scale of minutes: the result was successful real-time imaging of covalent modification. We subsequently discovered fluorogenic probes that increase in fluorescence intensity after the chemical reaction, leading to an improved signal-to-background ratio. Fluorogenic probes were used for intracellular imaging of dienophiles. We further developed strategies to react and image chemotherapeutics, such as trans-cyclooctene taxol analogues, inside living cells. Because the coupling partners are small molecules (<300 Da), they offer unique steric advantages in multistep amplification.We also describe recent success in using tetrazine reactions to label biomarkers on cells with magneto-fluorescent nanoparticles. Two-step protocols that use bioorthogonal chemistry can significantly amplify signals over both one-step labeling procedures as well as two-step procedures that use more sterically hindered biotin–avidin interactions. Nanoparticles can be detected with fluorescence or magnetic resonance techniques. These strategies are now being routinely used on clinical samples for biomarker profiling to predict malignancy and patient outcome.Finally, we discuss recent results with tetrazine reactions used for in vivo molecular imaging applications. Rapid tetrazine cycloadditions allow modular labeling of small molecules with the most commonly used positron emission tomography isotope, 18F. Additionally, recent work has applied this reaction directly in vivo for the pretargeted imaging of solid tumors. Future work with tetrazine cycloadditions will undoubtedly lead to optimized protocols, improved probes, and additional biomedical applications.
Co-reporter:Itay Budin
Journal of the American Chemical Society 2011 Volume 134(Issue 2) pp:751-753
Publication Date(Web):December 29, 2011
DOI:10.1021/ja2076873
One of the major goals of synthetic biology is the development of non-natural cellular systems. In this work, we describe a catalytic biomimetic coupling reaction capable of driving the de novo self-assembly of phospholipid membranes. Our system features a coppercatalyzed azide–alkyne cycloaddition that results in the formation of a triazole-containing phospholipid analogue. Concomitant assembly of membranes occurs spontaneously, not requiring preexisting membranes to house catalysts or precursors. The substitution of efficient synthetic reactions for key biochemical processes may offer a general route toward synthetic biological systems.
Co-reporter:M. D. Hardy, D. Konetski, C. N. Bowman and N. K. Devaraj
Organic & Biomolecular Chemistry 2016 - vol. 14(Issue 24) pp:NaN5558-5558
Publication Date(Web):2016/02/22
DOI:10.1039/C6OB00290K
As more methodologies for generating and manipulating biomimetic cellular systems are developed, opportunities arise for combining different methods to create more complex synthetic biological constructs. This necessitates an increasing need for tools to selectively trigger individual methodologies. Here we demonstrate ruthenium tris-bipyridine mediated photoredox triggering of the copper catalyzed alkyne azide cycloaddition reaction (CuAAC), resulting in the synthesis of biomimetic phospholipids in situ, and subsequent membrane assembly. The use of a ruthenium–copper electron transport chain to trigger phospholipid assembly opens up future opportunities for spatiotemporal synthesis of membranes.
Co-reporter:Cun Yu Zhou, Haoxing Wu and Neal Krishna Devaraj
Chemical Science (2010-Present) 2015 - vol. 6(Issue 7) pp:NaN4372-4372
Publication Date(Web):2015/05/19
DOI:10.1039/C5SC00653H
Phospholipids and glycolipids constitute an essential part of biological membranes, and are of tremendous fundamental and practical interest. Unfortunately, the preparation of functional phospholipids, or synthetic analogs, is often synthetically challenging. Here we utilize thiol-yne click chemistry methodology to gain access to phospho- and glycolipid analogs. Alkynyl hydrophilic head groups readily photoreact with numerous thiol modified lipid tails to yield the appropriate dithioether phospho- or glycolipids. The resulting structures closely resemble the structure and function of native diacylglycerolipids. Dithioether phosphatidylcholines (PCs) are suitable for forming giant unilamellar vesicles (GUV), which can be used as vessels for cell-free expression systems. The unnatural thioether linkages render the lipids resistant to phospholipase A2 hydrolysis. We utilize the improved stability of these lipids to control the shrinkage of GUVs composed of a mixture of 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) and dioleyl-dithioether PC, concentrating encapsulated nanoparticles. We imagine that these readily accessible lipids could find a number of applications as natural lipid substitutes.
Co-reporter:Brandon Nichols, Zhengtao Qin, Jun Yang, David R. Vera and Neal K. Devaraj
Chemical Communications 2014 - vol. 50(Issue 40) pp:NaN5217-5217
Publication Date(Web):2014/02/21
DOI:10.1039/C3CC49530B
We have developed a 68Ga metal chelating bioorthogonal tetrazine dextran probe that is highly reactive with trans-cyclooctene modified monoclonal antibodies for multistep imaging applications. Confocal microscopy and positron emission tomography (PET) were used to characterize the dextran probe in vitro and in vivo.