Co-reporter:Xiaolei Wang, Miho Emoto, Yusuke Miyake, Kaori Itto, Shu Xu, Hirotada Fujii, Hiroshi Hirata, Hirokazu Arimoto
Bioorganic & Medicinal Chemistry Letters 2016 Volume 26(Issue 20) pp:4947-4949
Publication Date(Web):15 October 2016
DOI:10.1016/j.bmcl.2016.09.010
A novel blood–brain barrier (BBB)-permeable compound 10 was discovered, wherein the nitroxide moiety was linked to a nicotine acetylcholine receptor ligand. It was applied as a probe for electron paramagnetic resonance (EPR) imaging of the mouse brain. The results demonstrated that the newly synthesized compound 10 exhibited BBB permeability. These findings provide an essential discovery for in vivo EPR imaging.
Co-reporter:Shu Xu and Hirokazu Arimoto
The Journal of Antibiotics 2016 69(4) pp:203-212
Publication Date(Web):February 10, 2016
DOI:10.1038/ja.2016.5
Kendomycin, an ansamycin-type natural product first reported in 1996, possesses a series of attractive bioactivities and a unique all-carbon macrocyclic skeleton. To the date, seven total syntheses, two formal total syntheses and a number of synthetic studies on this hot molecule have been reported. In this short review article, we mainly survey and comment on these efforts regarding the difficult macrocyclization strategies.
Co-reporter:Hirokazu Arimoto
BMC Pharmacology and Toxicology 2015 Volume 16( Issue 1 Supplement) pp:
Publication Date(Web):2015 December
DOI:10.1186/2050-6511-16-S1-A14
Co-reporter:Shu Xu, Kaori Itto, Masahide Satoh and Hirokazu Arimoto
Chemical Communications 2014 vol. 50(Issue 21) pp:2758-2761
Publication Date(Web):22 Jan 2014
DOI:10.1039/C3CC49160A
A novel and efficient transformation of primary alcohols to one-carbon shorter carboxylic acids using IBX is reported. Mechanistic studies revealed that the combination of IBX and molecular iodine produces a different active hypervalent iodine species.
Co-reporter:Xiaolei Wang, Miho Emoto, Atsushi Sugimoto, Yusuke Miyake, Kaori Itto, Mitsuo Amasaka, Shu Xu, Hiroshi Hirata, Hirotada Fujii, Hirokazu Arimoto
Tetrahedron Letters 2014 Volume 55(Issue 13) pp:2146-2149
Publication Date(Web):26 March 2014
DOI:10.1016/j.tetlet.2014.02.063
A scalable synthetic route for 15N-labeled 4-oxo-2,2,6,6-tetraethylpiperidine nitroxide (15N-TEEPONE) is described. This 15N-labeled nitroxide is suitable for electron paramagnetic resonance imaging of brain, and its higher sensitivity compared with that of its 14N-counterpart is an important advantage of the labeled derivative.
Co-reporter:Dr. Shu Xu;Daisuke Unabara;Dr. Daisuke Uemura;Dr. Hirokazu Arimoto
Chemistry – An Asian Journal 2014 Volume 9( Issue 1) pp:367-375
Publication Date(Web):
DOI:10.1002/asia.201301248
Abstract
The enantioselective total synthesis of the bioactive marine natural products pinnaic acid and halichlorine is reported in detail. Our total synthesis features the construction of the five-membered ring and C9 and C13 stereogenic centers through a palladium-catalyzed trimethylenemethane [3+2] cyclization; the installation of the nitrogen atom through a regioselective Beckmann rearrangement of a poorly reactive ketone; the stereoselective cyclization of the spiro ring through a four-step, one-pot hydrogenation–cyclization; and efficient connection of the sterically hindered lower chain through a reduced-pressure cross olefin metathesis reaction.
Co-reporter:Dr. Tetsuya Sengoku;Dr. Shu Xu;Kenji Ogura;Yoshinori Emori;Kenji Kitada;Dr. Daisuke Uemura;Dr. Hirokazu Arimoto
Angewandte Chemie 2014 Volume 126( Issue 16) pp:4297-4300
Publication Date(Web):
DOI:10.1002/ange.201400305
Abstract
A highly stereocontrolled, convergent total synthesis of kendomycin [(−)-TAN2162], an ansa-macrocyclic antibiotic, is reported. The key of the strategy is an unprecedented Tsuji–Trost macrocyclic etherification, followed by a transannular Claisen rearrangement to construct the 18-membered carbocyclic framework. The oxa-six- and five-membered rings were also stereoselectively constructed respectively by a cascade oxidative cyclization at an unfunctionalized benzylic position and using a one-pot epoxidation/5-exo-tet epoxide opening.
Co-reporter:Dr. Tetsuya Sengoku;Dr. Shu Xu;Kenji Ogura;Yoshinori Emori;Kenji Kitada;Dr. Daisuke Uemura;Dr. Hirokazu Arimoto
Angewandte Chemie International Edition 2014 Volume 53( Issue 16) pp:4213-4216
Publication Date(Web):
DOI:10.1002/anie.201400305
Abstract
A highly stereocontrolled, convergent total synthesis of kendomycin [(−)-TAN2162], an ansa-macrocyclic antibiotic, is reported. The key of the strategy is an unprecedented Tsuji–Trost macrocyclic etherification, followed by a transannular Claisen rearrangement to construct the 18-membered carbocyclic framework. The oxa-six- and five-membered rings were also stereoselectively constructed respectively by a cascade oxidative cyclization at an unfunctionalized benzylic position and using a one-pot epoxidation/5-exo-tet epoxide opening.
Co-reporter:Dr. Jun Nakamura;Hidenori Yamashiro;Hiroto Miya;Dr. Kenzo Nishiguchi;Dr. Hideki Maki;Dr. Hirokazu Arimoto
Chemistry - A European Journal 2013 Volume 19( Issue 36) pp:12104-12112
Publication Date(Web):
DOI:10.1002/chem.201301074
Abstract
Vancomycin-resistant Staphylococcus aureus (S. aureus) (VRSA) uses depsipeptide-containing modified cell-wall precursors for the biosynthesis of peptidoglycan. Transglycosylase is responsible for the polymerization of the peptidoglycan, and the penicillin-binding protein 2 (PBP2) plays a major role in the polymerization among several transglycosylases of wild-type S. aureus. However, it is unclear whether VRSA processes the depsipeptide-containing peptidoglycan precursor by using PBP2. Here, we describe the total synthesis of depsi-lipid I, a cell-wall precursor of VRSA. By using this chemistry, we prepared a depsi-lipid II analogue as substrate for a cell-free transglycosylation system. The reconstituted system revealed that the PBP2 of S. aureus is able to process a depsi-lipid II intermediate as efficiently as its normal substrate. Moreover, the system was successfully used to demonstrate the difference in the mode of action of the two antibiotics moenomycin and vancomycin.
Co-reporter:Dr. Yohei Saito;Chiaki Ito;Dr. Shigemoto Fujii; Dr. Tomohiro Sawa; Dr. Takaaki Akaike; Dr. Hirokazu Arimoto
ChemBioChem 2013 Volume 14( Issue 9) pp:1068-1071
Publication Date(Web):
DOI:10.1002/cbic.201300129
Co-reporter:Yohei Saito, Tomohiro Sawa, Jun Yoshitake, Chiaki Ito, Shigemoto Fujii, Takaaki Akaike and Hirokazu Arimoto
Molecular BioSystems 2012 vol. 8(Issue 11) pp:2909-2915
Publication Date(Web):27 Jul 2012
DOI:10.1039/C2MB25189B
8-Nitro-cGMP is an endogenous nucleotide discovered under inflammation conditions as an important mediator of nitric oxide (NO) signaling. Besides cGMP-like behaviour, 8-nitro-cGMP exerts unique cytoprotective effects against oxidative stress. Although the formation of 8-nitro-cGMP from 8-nitro-GTP has previously been proposed, the mechanism by which excess or unused 8-nitro-cGMP is removed from cells remains unknown. In this study, we report a nitric oxide-dependent cellular conversion of 8-nitro-cGMP to intact cGMP in RAW 264.7 macrophage cells. In our experiments, we synthesized isotopically labeled 8-nitro-cGMP as a tool for metabolites analysis and identified 8-amino-cGMP as an initial metabolite of 8-nitro-cGMP using a LC-MS/MS technique. We also proved that endogenous 8-nitro-cGMP can be converted into 8-amino-cGMP by immunocytochemical staining with an antibody that specifically recognizes 8-amino-cGMP. Moreover, we showed that isotopically labeled 8-amino-cGMP is metabolized into cGMP under inflammation conditions. We propose that nitrosylation of 8-amino-cGMP occurs by NO formation under stress conditions and gives putative 8-diazonium-cGMP, which subsequently decomposes into cGMP. To the best of our knowledge, this study is the first to report reductive deamination of aminoguanine nucleotide at the C-8 position. The findings of this study collectively indicate that NO plays a crucial role not only in the production of 8-nitro-cGMP but also in its elimination under oxidative stress or inflammation.
Co-reporter:Jun Nakamura, Ryota Ichikawa, Hidenori Yamashiro, Takafumi Takasawa, Xaolei Wang, Yasushi Kawai, Shu Xu, Hideki Maki and Hirokazu Arimoto
MedChemComm 2012 vol. 3(Issue 6) pp:691-695
Publication Date(Web):19 Mar 2012
DOI:10.1039/C2MD20005H
Modification of vancomycin with lipophilic substituents enhances its antibacterial activity against vancomycin-resistant strains. To further improve the activity of the resulting lipoglycopeptides, it is necessary to understand these compounds' molecular modes of action. By developing a photoaffinity probe, we were able to elucidate in this study the binding targets of a novel lipoglycopeptide (Van-M-02) at the cell membrane of Staphylococcus aureus. The probe could be successfully used to identify penicillin-binding protein 2 (PBP2), an indispensable enzyme in bacterial cell-wall synthesis, as a target. LC-MS/MS analysis of affinity-labeled PBP2 enabled us to map the Van-M-02 binding site in the transpeptidase domain. These findings will allow for the rational design of better antibiotics against vancomycin-resistant bacteria.
Co-reporter:Dr. Jun Nakamura;Hidenori Yamashiro;Sayaka Hayashi;Mami Yamamoto;Kenji Miura;Dr. Shu Xu;Dr. Takayuki Doi;Dr. Hideki Maki;Osamu Yoshida;Dr. Hirokazu Arimoto
Chemistry - A European Journal 2012 Volume 18( Issue 40) pp:12681-12689
Publication Date(Web):
DOI:10.1002/chem.201201211
Abstract
Covalently linked vancomycin dimers have attracted a great deal of attention among researchers because of their enhanced antibacterial activity against vancomycin-resistant strains. However, the lack of a clear insight into the mechanisms of action of these dimers hampers rational optimization of their antibacterial potency. Here, we describe the synthesis and antibacterial activity of novel vancomycin dimers with a constrained molecular conformation achieved by two tethers between vancomycin units. Conformational restriction is a useful strategy for studying the relationship between the molecular topology and biological activity of compounds. In this study, two vancomycin units were linked at three distinct positions of the glycopeptide (vancosamine residue (V), C terminus (C), and N terminus (N)) to form two types of novel vancomycin cyclic dimers. Active NC-VV-linked dimers with a stable conformation as indicated by molecular mechanics calculations selectively suppressed the peptidoglycan polymerization reaction of vancomycin-resistant Staphylococcus aureus in vitro. In addition, double-disk diffusion tests indicated that the antibacterial activity of these dimers against vancomycin-resistant enterococci might arise from the inhibition of enzymes responsible for peptidoglycan polymerization. These findings provide a new insight into the biological targets of vancomycin dimers and the conformational requirements for efficient antibacterial activity against vancomycin-resistant strains.
Co-reporter:Shu Xu, Hideaki Yoshimura, Norihito Maru, Osamu Ohno, Hirokazu Arimoto, and Daisuke Uemura
Journal of Natural Products 2011 Volume 74(Issue 5) pp:1323-1326
Publication Date(Web):March 16, 2011
DOI:10.1021/np200031d
Pinnarine (1), a new macrocyclic alkaloid, was isolated from the black marine sponge Halichondria okadai. The structure was elucidated on the basis of 2D NMR and comparison with the spectra of the co-isolated known halichlorine. Further confirmation of the structure and the absolute configuration was validated by a synthetic method from authentic pinnaic acid and CD analysis. The isolation of pinnarine also suggested a biogenetic pathway from pinnaic acid to halichlorine.
Co-reporter:Osamu Yoshida, Jun Nakamura, Hidenori Yamashiro, Kenji Miura, Sayaka Hayashi, Kosei Umetsu, Shu Xu, Hideki Maki and Hirokazu Arimoto
MedChemComm 2011 vol. 2(Issue 4) pp:278-282
Publication Date(Web):11 Feb 2011
DOI:10.1039/C0MD00230E
The emergence of vancomycin-resistant bacteria has created an urgent need for new active analogues of vancomycin. We previously reported vancomycin dimers with in vivo antibacterial activity. Here, we provide the first experimental insights into their inhibitory actions in bacterial cell wall synthesis.
Co-reporter:Yuki Nakama ; Osamu Yoshida ; Masanori Yoda ; Keisuke Araki ; Yuri Sawada ; Jun Nakamura ; Shu Xu ; Kenji Miura ; Hideki Maki
Journal of Medicinal Chemistry 2010 Volume 53(Issue 6) pp:2528-2533
Publication Date(Web):February 24, 2010
DOI:10.1021/jm9017543
Novel semisynthetic vancomycin derivatives with antibacterial activity against vancomycin-resistant S. aureus (VRSA) were prepared. Replacement of Cl groups of vancomycin by Suzuki−Miyaura cross-coupling reaction, which gave the title compounds, is described for the first time. Introduction of a carbon substituent at the amino acid residue 2 of vancomycin led to an enhancement of antibacterial activity against vancomycin-resistant strains, whereas the additional introduction at the amino acid residue 6 resulted in a reduction in activity even against vancomycin-susceptible strains.
Co-reporter:Shu Xu, Takayuki Toyama, Jun Nakamura, Hirokazu Arimoto
Tetrahedron Letters 2010 Volume 51(Issue 34) pp:4534-4537
Publication Date(Web):25 August 2010
DOI:10.1016/j.tetlet.2010.06.102
A one-pot exo-olefin reductive cleavage was for the first time developed. The reaction could proceed under a mild condition avoiding the use of hazardous and expensive reagents. Meanwhile, a TMSCl-mediated Clemmensen reduction in alcoholic solvent was also examined.A one-pot exo-olefin reductive cleavage was for the first time developed. The reaction could proceed under a mild condition avoiding the use of hazardous and expensive reagents. Meanwhile, a TMSCl-mediated Clemmensen reduction in alcoholic solvent was also examined.
Co-reporter:Yohei Saito, Hirobumi Taguchi, Shigemoto Fujii, Tomohiro Sawa, Eriko Kida, Chizuko Kabuto, Takaaki Akaike and Hirokazu Arimoto
Chemical Communications 2008 (Issue 45) pp:5984-5986
Publication Date(Web):14 Oct 2008
DOI:10.1039/B810771H
Azido- and fluoro- derivatives of 8-nitroguanosine were developed, and will contribute to the exploration of proteinS-guanylation by endogenous nitrated nucleosides.
Co-reporter:Jun Lu, Osamu Yoshida, Sayaka Hayashi and Hirokazu Arimoto
Chemical Communications 2007 (Issue 3) pp:251-253
Publication Date(Web):24 Oct 2006
DOI:10.1039/B613319C
A novel and efficient avenue for the preparation of dimeric vancomycins is described, and the dimers exhibited excellent antibacterial activities in the murine infection model.
Co-reporter:Shu Xu Dr.;Daisuke Uemura Dr.
Angewandte Chemie 2007 Volume 119(Issue 30) pp:
Publication Date(Web):25 JUN 2007
DOI:10.1002/ange.200701581
Zusammengebastelt: Die asymmetrische Totalsynthese von Pinnasäure gelang auf einem stereospezifischen Weg, wobei Schlüsselschritte eine Pd-katalysierte Trimethylenmethan(TMM)-[3+2]-Cyclisierung, eine vierstufige Tandem-Hydrierung-Cyclisierung und Kreuz-Olefinmetathesereaktionen waren (siehe Schema).
Co-reporter:Shu Xu Dr.;Daisuke Uemura Dr.
Angewandte Chemie International Edition 2007 Volume 46(Issue 30) pp:
Publication Date(Web):25 JUN 2007
DOI:10.1002/anie.200701581
Pinned together: Asymmetric total synthesis of pinnaic acid was accomplished through a stereospecific route that features as key steps a Pd-catalyzed trimethylenemethane (TMM) [3+2] cyclization, a four-step tandem hydrogenation–cyclization, and cross-olefin-metathesis reactions (see scheme).
Co-reporter:Takao Ichino, Hirokazu Arimoto and Daisuke Uemura
Chemical Communications 2006 (Issue 16) pp:1742-1744
Publication Date(Web):10 Mar 2006
DOI:10.1039/B517149K
A novel avenue for oxazoles via Beckmann rearrangement of α-formyl ketoxime dimethyl acetals is described that indicates the possibility of a non-amino acid biosynthetic pathway in marine natural products.
Co-reporter:Ayato Sato, Tomoya Masuda, Hirokazu Arimoto and Daisuke Uemura
Organic & Biomolecular Chemistry 2005 vol. 3(Issue 12) pp:2231-2233
Publication Date(Web):04 May 2005
DOI:10.1039/B503406J
Samarium-mediated 7-endo-trig radical cyclization afforded excellent stereocontrol of the four contiguous asymmetric centers present in the 6-7-6 tricyclic cores of the (sugar-fused) erinacines E, F, and G.
Co-reporter:Tsuyoshi Yamamoto, Hirokazu Arimoto, Tomoya Kinumi, Yuichi Oba, Daisuke Uemura
Insect Biochemistry and Molecular Biology (May 2007) Volume 37(Issue 5) pp:520-521
Publication Date(Web):1 May 2007
DOI:10.1016/j.ibmb.2007.02.003
Co-reporter:Tsuyoshi Yamamoto, Hirokazu Arimoto, Tomoya Kinumi, Yuichi Oba, Daisuke Uemura
Insect Biochemistry and Molecular Biology (March 2007) Volume 37(Issue 3) pp:278-286
Publication Date(Web):1 March 2007
DOI:10.1016/j.ibmb.2006.12.001
The solitary spider wasp Cyphononyx dorsalis is well known to hunt spiders: it uses its stinger to paralyze its prey to feed its larva. This wasp venom was fractionated by bioassay-guided chromatography. Cation-exchange chromatography indicated that the pI value of the active principle was >6.5. 2D-PAGE analysis of the active fraction obtained by gel permeation chromatography showed three major spots of proteins. Two that appeared at pI of >6.5 were analyzed by in-gel digestion and protein sequencing. Three proteins were identified: an arginine kinase-like protein that was highly homologous to that of honeybee, an elastase like-protein that was homologous to that of fire ant, and an unknown protein that was not homologous to any protein in the database. Recombinant proteins expressed in E. coli were purified and used for bioassay. The results showed that the arginine kinase-like protein exhibited paralytic activity against spiders with the same characteristic symptoms as the crude venom.
Co-reporter:Shu Xu, Kaori Itto, Masahide Satoh and Hirokazu Arimoto
Chemical Communications 2014 - vol. 50(Issue 21) pp:NaN2761-2761
Publication Date(Web):2014/01/22
DOI:10.1039/C3CC49160A
A novel and efficient transformation of primary alcohols to one-carbon shorter carboxylic acids using IBX is reported. Mechanistic studies revealed that the combination of IBX and molecular iodine produces a different active hypervalent iodine species.
Co-reporter:Jun Lu, Osamu Yoshida, Sayaka Hayashi and Hirokazu Arimoto
Chemical Communications 2007(Issue 3) pp:NaN253-253
Publication Date(Web):2006/10/24
DOI:10.1039/B613319C
A novel and efficient avenue for the preparation of dimeric vancomycins is described, and the dimers exhibited excellent antibacterial activities in the murine infection model.
Co-reporter:Yohei Saito, Hirobumi Taguchi, Shigemoto Fujii, Tomohiro Sawa, Eriko Kida, Chizuko Kabuto, Takaaki Akaike and Hirokazu Arimoto
Chemical Communications 2008(Issue 45) pp:NaN5986-5986
Publication Date(Web):2008/10/14
DOI:10.1039/B810771H
Azido- and fluoro- derivatives of 8-nitroguanosine were developed, and will contribute to the exploration of proteinS-guanylation by endogenous nitrated nucleosides.