We demonstrate how a focused electron beam can be used to chemically activate porphyrin layers on Ag(111) such that they become locally reactive toward the decomposition of iron pentacarbonyl, Fe(CO)5. This finding considerably expands the scope of electron beam induced surface activation (EBISA) and also has implications for electron beam induced deposition (EBID). The influence of the porphyrin layer thickness on both processes is studied in detail using scanning tunneling microscopy (STM) and scanning electron microscopy (SEM) as well as Auger electron spectroscopy (AES) and scanning Auger microscopy (SAM). While a closed monolayer of porphyrin molecules does exhibit some activity toward Fe(CO)5 decomposition after electron irradiation, a growth enhancement is found for bi- and multilayer films. This is attributed to a partial quenching of activated centers in the first layer due to the close proximity of the silver substrate. In addition, we demonstrate that the catalytic decomposition of gaseous Fe(CO)5 on Ag(111) can be effectively inhibited by introducing a densely packed monolayer of 2H-tetraphenylporphyrin (2HTPP) molecules.

The adsorption behaviour of 2H-5,10,15,20-tetraphenyltetrabenzoporphyrin (2HTPTBP) on different metal surfaces, i.e., Ag(111), Cu(111), Cu(110), and Cu(110)–(2 × 1)O was investigated by scanning tunnelling microscopy at room temperature. The adsorption of 2HTPTBP on Ag(111) leads to the formation of a well-ordered two-dimensional (2D) island structure due to the mutual stabilization through the intermolecular π–π stacking and T-type-like interactions of phenyl and benzene substituents of neighboring molecules. For 2HTPTBP on Cu(111), the formed 2D supramolecular structures exhibit a coverage-dependent behaviour, which can be understood from the interplay of molecule–substrate and molecule–molecule interactions. In contrast, on Cu(110) the 2HTPTBP molecules form dispersed one-dimensional (1D) molecular chains along the [10] direction of the substrate due to relatively strong attractive molecule–substrate interactions. Furthermore, we demonstrate that the reconstruction of the Cu(110) surface by oxygen atoms yields a change in dimensionality of the resulting nanostructures from 1D on Cu(110) to 2D on (2 × 1) oxygen-reconstructed Cu(110), induced by a decreased molecule–substrate interaction combined with attractive molecule–molecule interactions. This comprehensive study on these prototypical systems enables us to deepen the understanding of the particular role of the substrate concerning the adsorption behavior of organic molecules on metal surfaces and thus to tweak the ordering in functional molecular architectures.

Based on density functional theory calculations combined with experimental results, we report and discuss an extremely distorted, “inverted” adsorption geometry of free-base tetraphenylporphyrin on Cu(111). The current findings yield new insights into a well-studied system, shedding light on the peculiar molecule–substrate interaction and the resulting intramolecular conformation.

The investigation of porphyrin derivatives at the solid–vacuum interface has become a vivid research field with the prospect to tailor functional molecular architectures and as prototype examples to study the fundamental properties of porphyrin derivatives in regard to their vital role in many natural processes. The functional properties of the porphyrin derivatives are mainly determined by the central metal atom. Thus, the recent exploration of the surface-confined in situ metalation of porphyrins is an important step toward the realization of molecule-based functional devices. The corresponding metalation reaction of free base porphyrin derivatives can be conveniently realized in situ in ultrahigh vacuum by post- or predeposition of metal atoms or directly with substrate atoms in the so-called self-metalation. Moderate heating above room temperature (RT) might be necessary either to realize the transport of the metal to the porphyrin via diffusion or to overcome an activation barrier determined by the redox reaction itself.Surface science techniques like scanning tunneling microscopy (STM), X-ray photoelectron spectroscopy (XPS), and temperature-programmed desorption (TPD) are powerful tools to scrutinize the reaction and give valuable insights into the metalation process. For example, the completed metalation can be reflected in an enhanced apparent height of the corresponding porphyrin in STM or can be evidenced by characteristic changes in the N 1s region in XPS. These signatures allow monitoring of the progress of the metalation, and it was found that the reaction generally proceeds with very high yield.Surface diffusion of the coadsorbed metal atoms mediates the reaction and is crucial for the high yields of the corresponding reactions with pre- and postadsorbed metals. It was also demonstrated that the completed metalation can indeed significantly alter the adsorption behavior and the electronic properties and thus the functionality of the porphyrin molecules. These alterations can be used to monitor the kinetics of a particular porphyrin self-metalation reaction by STM and to estimate the activation barrier for that reaction based on isothermal measurements at different temperatures. Also TPD measurements of the H2 and D2 signals allow for the determination of corresponding activation energies for the metalation of free base porphyrins and their deuterized analogues. Gas phase DFT calculations of the metalation of the “bare” free base porphyrin macrocycle identify intermediate reaction steps with the transfer of the first hydrogen atom to the metal center being the main barrier to overcome. The values from these calculations are in fair agreement with experimentally determined ones. However, TPD based results indicate that exchanges of deuterium and hydrogen between the central nitrogen and the surface occur, which indicate an active role of the surface and challenge the findings from gas phase DFT.The in situ metalation of porphyrins at the solid–vacuum interface is established as a novel and convenient route to tailor functional molecular architectures. With different surface science techniques detailed insights into the surface-mediated metalation reaction were achieved for this class of prototype functional molecules.

A systematic scanning tunnelling microscopy investigation of the self-assembly and of thermally induced conformational changes of Ni(II)-meso-tetrakis (4-tert-butylphenyl) benzoporphyrin (Ni-TTBPBP) on Cu(111) is presented. At room temperature, Ni-TTBPBPs diffuse on the surface and self-assemble into ordered islands with well-defined registry to the substrate, with two different azimuthal orientations. The formation of the characteristic supramolecular structure is attributed to van der Waals interactions between the tert-butyl groups. Upon moderate heating, the intramolecular conformation changes irreversibly due to a dehydrogenative intramolecular aryl–aryl coupling reaction. This reaction is coverage dependent, with a lower rate at higher initial coverage; this behaviour is attributed to a stabilization of Ni-TTBPBP in the ordered islands at higher coverage.

We have studied the coverage-dependent adsorption behavior of Ni(II)-5,10,15,20-tetraphenyltetrabenzoporphyrin on Cu(111) by scanning tunneling microscopy (STM) at room temperature. At medium coverages, the molecules self-assemble into two-dimensional islands, due to mutual stabilization through intermolecular interactions. Altogether, three different supramolecular arrangements coexist at low-to-medium coverages. On the basis of high-resolution STM images and density functional theory calculations, models for the three arrangements and the corresponding intramolecular conformations of the individual molecules are proposed. The observed polymorphism is attributed to a complex interplay of specific T-type and π–π stacking interactions between the phenyl groups. For Ni(II)-meso-tetrakis (4-tert-butylphenyl) benzoporphyrin, in which the aromatic periphery is modified by the attachment of tert-butyl groups, only one supramolecular arrangement on Cu(111) is found. This difference highlights the fact that the choice of peripheral ligands of the porphyrin derivatives plays an important role in the fabrication and tailoring of functional molecular architectures.

We observe and induce conformational switching of individual molecules via scanning tunneling microscopy (STM) at and close to room temperature. 2H-5,10,15,20-Tetrakis-(3,5-di-tert-butyl)-phenylporphyrin adsorbed on Cu(111) forms a peculiar supramolecular ordered phase in which the molecules arrange in alternating rows, with two distinct appearances in STM which are assigned to concave and convex intramolecular conformations. Around room temperature, frequent bidirectional conformational switching of individual molecules from concave to convex and vice versa is observed. From the temperature dependence, detailed insights into the energy barriers and entropic contributions of the switching processes are deduced. At 200 K, controlled STM tip-induced unidirectional switching is possible, yielding an information storage density of 4.9 × 1013 bit/inch2. With this contribution we demonstrate that controlled switching of individual molecules at comparably high temperatures is possible and that entropic effects can be a decisive factor in potential molecular devices at these temperatures.

Based on a combined scanning tunnelling microscopy and X-ray photoelectron spectroscopy study we present detailed insights into pronounced changes of long-range order and intramolecular conformation during the self-metalation of 2H-5,10,15,20-tetrakis-(3,5-di-tert-butyl)-phenylporphyrin (2HTTBPP) to CuTTBPP on Cu(111). Upon metalation, the porphyrin literally “pops up” from the surface, due to a drastically reduced molecule–substrate interaction.

Scanning tunnelling microscopy (STM) enables us to directly observe the dynamic behaviour of organic molecules on surfaces. While imaging atoms and molecules using STM is certainly fascinating by itself, corresponding temperature-dependent measurements allow for the quantitative determination of the energetics and kinetics of the underlying molecular surface processes. Herein, we review recent advances in the STM investigation of the dynamic behaviour of adsorbed porphyrins at and close to room temperature. Three different case studies are discussed, providing insight into the dynamics of diffusion, rotation, reaction, and molecular switching at surfaces, based on isothermal STM measurements. The reviewed examples demonstrate that variable temperature STM can be a suitable tool to directly monitor the dynamic behaviour of individual adsorbed molecules, at and close to room temperature. Free base porphyrins on Cu(111) proved to be particularly suitable for these studies due to the strong bonding interaction between the iminic nitrogen atoms in the porphyrin macrocycle and the Cu substrate atoms. As a consequence, the corresponding activation energies for surface diffusion, self-metalation reaction and conformational switching are of a magnitude that allows for monitoring the processes at and around room temperature, in contrast to most previous studies, which were performed at cryogenic temperatures. The kinetic analysis of the surface diffusion and self-metalation was performed using an Arrhenius approach, yielding the corresponding activation energies and preexponential factors. In contrast, the conformational switching process was analysed in the framework of transition state theory, based on the Eyring equation. This approach provides a more detailed insight into interpretable thermodynamic potentials, i.e., the enthalpic and entropic contributions to the activation barrier. The analysis shows that at room temperature the adsorption and switching behaviour of the investigated free base porphyrin on Cu(111) is dominated by entropic effects. Since the entropic energy contribution vanishes at low temperatures, the importance of experiments conducted at temperatures close to room temperature is emphasized.

Using X-ray photoelectron spectroscopy (XPS) and scanning tunneling microscopy (STM), the coverage-dependent self-metalation of 2H-tetraphenylporphyrin (2HTPP) with Cu on Cu(111) at 400 K has been studied. At low coverages the porphyrin molecules are adsorbed as isolated molecules, and the rate of metalation is slow. As the coverage is increased beyond ∼0.36 molecules/nm2, a supramolecular checkerboard structure is formed, with every second molecule slightly elevated above the surface. The appearance of this checkerboard structure coincides with a dramatic increase in the rate of metalation. This enhancement is attributed to a smaller activation barrier for the elevated molecules, which have an internal conformation similar to that of the free molecule, whereas the less reactive molecules in direct contact with the surface are strongly distorted.

We demonstrate how a focused electron beam can be used to chemically activate porphyrin layers on Ag(111) such that they become locally reactive toward the decomposition of iron pentacarbonyl, Fe(CO)5. This finding considerably expands the scope of electron beam induced surface activation (EBISA) and also has implications for electron beam induced deposition (EBID). The influence of the porphyrin layer thickness on both processes is studied in detail using scanning tunneling microscopy (STM) and scanning electron microscopy (SEM) as well as Auger electron spectroscopy (AES) and scanning Auger microscopy (SAM). While a closed monolayer of porphyrin molecules does exhibit some activity toward Fe(CO)5 decomposition after electron irradiation, a growth enhancement is found for bi- and multilayer films. This is attributed to a partial quenching of activated centers in the first layer due to the close proximity of the silver substrate. In addition, we demonstrate that the catalytic decomposition of gaseous Fe(CO)5 on Ag(111) can be effectively inhibited by introducing a densely packed monolayer of 2H-tetraphenylporphyrin (2HTPP) molecules.

Electron beam-induced surface activation (EBISA) has been used to grow wires of iron on rutile TiO2(110)-(1 × 1) in ultrahigh vacuum. The wires have a width down to ∼20 nm and hence have potential utility as interconnects on this dielectric substrate. Wire formation was achieved using an electron beam from a scanning electron microscope to activate the surface, which was subsequently exposed to Fe(CO)5. On the basis of scanning tunneling microscopy and Auger electron spectroscopy measurements, the activation mechanism involves electron beam-induced surface reduction and restructuring.

The adsorption behaviour of 2H-5,10,15,20-tetraphenyltetrabenzoporphyrin (2HTPTBP) on different metal surfaces, i.e., Ag(111), Cu(111), Cu(110), and Cu(110)–(2 × 1)O was investigated by scanning tunnelling microscopy at room temperature. The adsorption of 2HTPTBP on Ag(111) leads to the formation of a well-ordered two-dimensional (2D) island structure due to the mutual stabilization through the intermolecular π–π stacking and T-type-like interactions of phenyl and benzene substituents of neighboring molecules. For 2HTPTBP on Cu(111), the formed 2D supramolecular structures exhibit a coverage-dependent behaviour, which can be understood from the interplay of molecule–substrate and molecule–molecule interactions. In contrast, on Cu(110) the 2HTPTBP molecules form dispersed one-dimensional (1D) molecular chains along the [10] direction of the substrate due to relatively strong attractive molecule–substrate interactions. Furthermore, we demonstrate that the reconstruction of the Cu(110) surface by oxygen atoms yields a change in dimensionality of the resulting nanostructures from 1D on Cu(110) to 2D on (2 × 1) oxygen-reconstructed Cu(110), induced by a decreased molecule–substrate interaction combined with attractive molecule–molecule interactions. This comprehensive study on these prototypical systems enables us to deepen the understanding of the particular role of the substrate concerning the adsorption behavior of organic molecules on metal surfaces and thus to tweak the ordering in functional molecular architectures.

Based on density functional theory calculations combined with experimental results, we report and discuss an extremely distorted, “inverted” adsorption geometry of free-base tetraphenylporphyrin on Cu(111). The current findings yield new insights into a well-studied system, shedding light on the peculiar molecule–substrate interaction and the resulting intramolecular conformation.

A systematic scanning tunnelling microscopy investigation of the self-assembly and of thermally induced conformational changes of Ni(II)-meso-tetrakis (4-tert-butylphenyl) benzoporphyrin (Ni-TTBPBP) on Cu(111) is presented. At room temperature, Ni-TTBPBPs diffuse on the surface and self-assemble into ordered islands with well-defined registry to the substrate, with two different azimuthal orientations. The formation of the characteristic supramolecular structure is attributed to van der Waals interactions between the tert-butyl groups. Upon moderate heating, the intramolecular conformation changes irreversibly due to a dehydrogenative intramolecular aryl–aryl coupling reaction. This reaction is coverage dependent, with a lower rate at higher initial coverage; this behaviour is attributed to a stabilization of Ni-TTBPBP in the ordered islands at higher coverage.

Scanning tunnelling microscopy (STM) enables us to directly observe the dynamic behaviour of organic molecules on surfaces. While imaging atoms and molecules using STM is certainly fascinating by itself, corresponding temperature-dependent measurements allow for the quantitative determination of the energetics and kinetics of the underlying molecular surface processes. Herein, we review recent advances in the STM investigation of the dynamic behaviour of adsorbed porphyrins at and close to room temperature. Three different case studies are discussed, providing insight into the dynamics of diffusion, rotation, reaction, and molecular switching at surfaces, based on isothermal STM measurements. The reviewed examples demonstrate that variable temperature STM can be a suitable tool to directly monitor the dynamic behaviour of individual adsorbed molecules, at and close to room temperature. Free base porphyrins on Cu(111) proved to be particularly suitable for these studies due to the strong bonding interaction between the iminic nitrogen atoms in the porphyrin macrocycle and the Cu substrate atoms. As a consequence, the corresponding activation energies for surface diffusion, self-metalation reaction and conformational switching are of a magnitude that allows for monitoring the processes at and around room temperature, in contrast to most previous studies, which were performed at cryogenic temperatures. The kinetic analysis of the surface diffusion and self-metalation was performed using an Arrhenius approach, yielding the corresponding activation energies and preexponential factors. In contrast, the conformational switching process was analysed in the framework of transition state theory, based on the Eyring equation. This approach provides a more detailed insight into interpretable thermodynamic potentials, i.e., the enthalpic and entropic contributions to the activation barrier. The analysis shows that at room temperature the adsorption and switching behaviour of the investigated free base porphyrin on Cu(111) is dominated by entropic effects. Since the entropic energy contribution vanishes at low temperatures, the importance of experiments conducted at temperatures close to room temperature is emphasized.

Based on a combined scanning tunnelling microscopy and X-ray photoelectron spectroscopy study we present detailed insights into pronounced changes of long-range order and intramolecular conformation during the self-metalation of 2H-5,10,15,20-tetrakis-(3,5-di-tert-butyl)-phenylporphyrin (2HTTBPP) to CuTTBPP on Cu(111). Upon metalation, the porphyrin literally “pops up” from the surface, due to a drastically reduced molecule–substrate interaction.