Co-reporter:Dominik S. Allgäuer, Harish Jangra, Haruyasu Asahara, Zhen Li, Quan Chen, Hendrik Zipse, Armin R. Ofial, and Herbert Mayr
Journal of the American Chemical Society September 27, 2017 Volume 139(Issue 38) pp:13318-13318
Publication Date(Web):September 18, 2017
DOI:10.1021/jacs.7b05106
In order to quantify the electrophilic reactivities of common Michael acceptors, we measured the kinetics of the reactions of monoacceptor-substituted ethylenes (H2C═CH-Acc, 1) and styrenes (PhCH═CH-Acc, 2) with pyridinium ylides 3, sulfonium ylide 4, and sulfonyl-substituted chloromethyl anion 5. Substitution of the 57 measured second-order rate constants (log k) and the previously reported nucleophile-specific parameters N and sN for 3–5 into the correlation log k = sN(E + N) allowed us to calculate 15 new empirical electrophilicity parameters E for Michael acceptors 1 and 2. The use of the same parameters sN, N, and E for these different types of reactions shows that all reactions proceed via a common rate-determining step, the nucleophilic attack of 3–5 at the Michael acceptors with formation of acyclic intermediates, which subsequently cyclize to give tetrahydroindolizines (stepwise 1,3-dipolar cycloadditions with 3) and cyclopropanes (with 4 and 5), respectively. The electrophilicity parameters E thus determined can be used to calculate the rates of the reactions of Michael acceptors 1 and 2 with any nucleophile of known N and sN. DFT calculations were performed to confirm the suggested reaction mechanisms and to elucidate the origin of the electrophilic reactivities. While electrophilicities E correlate poorly with the LUMO energies and with Parr’s electrophilicity index ω, good correlations were found between the experimentally observed electrophilic reactivities of 44 Michael acceptors and their calculated methyl anion affinities, particularly when solvation by dimethyl sulfoxide was taken into account by applying the SMD continuum solvation model. Because of the large structural variety of Michael acceptors considered for these correlations, which cover a reactivity range of 17 orders of magnitude, we consider the calculation of methyl anion affinities to be the method of choice for a rapid estimate of electrophilic reactivities.
Co-reporter:Johnny Hioe, Davor Šakić, Valerije Vrček and Hendrik Zipse
Organic & Biomolecular Chemistry 2015 vol. 13(Issue 1) pp:157-169
Publication Date(Web):2014/10/16
DOI:10.1039/C4OB01656D
Radical stabilization energies (RSEs) for a wide variety of nitrogen-centered radicals and their protonated counterparts have been calculated at G3(MP2)-RAD and G3B3 level. The calculated RSE values can be rationalized through the combined effects of resonance delocalization of the unpaired spin, electron donation through adjacent alkyl groups or lone pairs, and through inductive electron donation/electron withdrawal. The influence of ring strain effects as well as the synergistic combination of individual substituent effects (captodatively stabilized N-radicals) have also been explored. In symmetric N-radicals the substituents may also affect the relative ordering of electronic states. In most cases the π-type radical (unpaired spin distribution perpendicular to the plane of the N-radical) is found to be most stable. Closed shell precursors of biological and pharmaceutical relevance, for which neither experimental nor theoretical results on radical stabilities exist, have been included.
Co-reporter:Dr. Lakshmanan Shiya ;Dr. Hendrik Zipse
Chemistry - A European Journal 2015 Volume 21( Issue 40) pp:14060-14067
Publication Date(Web):
DOI:10.1002/chem.201502384
Abstract
For the (aut)oxidation of toluene to benzyl hydroperoxide, benzyl alcohol, benzaldehyde, and benzoic acid, the thermochemical profiles for various radical-generating reactions have been compared. A key intermediate in all of these reactions is benzyl hydroperoxide, the heat of formation of which has been estimated by using results from CBS-QB3, G4, and G3B3 calculations. Homolytic OO bond cleavage in this hydroperoxide is strongly endothermic and thus unlikely to contribute significantly to initiation processes. In terms of reaction enthalpies the most favorable initiation process involves bimolecular reaction of benzyl hydroperoxide to yield hydroxy and benzyloxy radicals along with water and benzaldehyde. The reaction enthalpy and free energy of this process is significantly more favorable than those for the unimolecular dissociation of known radical initiators, such as dibenzoylperoxide or dibenzylhyponitrite.
Co-reporter:Cong Zhang, Pascal Patschinski, David S. Stephenson, Robin Panisch, Josef Heinrich Wender, Max C. Holthausen and Hendrik Zipse
Physical Chemistry Chemical Physics 2014 vol. 16(Issue 31) pp:16642-16650
Publication Date(Web):27 Jun 2014
DOI:10.1039/C4CP01736F
Aiming at the identification of an efficient computational protocol for the accurate NMR assessment of organosilanes in low-polarity organic solvents, 29Si NMR chemical shifts of a selected set of such species relevant in organic synthesis have been calculated relative to tetramethylsilane (TMS, 1) using selected density functional and perturbation theory methods. Satisfactory results are obtained when using triple zeta quality basis sets such as IGLO-III. Solvent effects impact the calculated results through both, changes in substrate geometry as well as changes in the actual shieldings. Spin–orbit (SO) corrections are required for systems carrying more than one chlorine atom directly bonded to silicon. Best overall results are obtained using gas phase geometries optimized at MPW1K/6-31+G(d) level in combination with shielding calculations performed at MPW1K/IGLO-III level in the presence of the PCM continuum solvation model.
Co-reporter:Dr. Paul Hommes;Christina Fischer;Dr. Christoph Lindner;Dr. Hendrik Zipse;Dr. Hans-Ulrich Reißig
Angewandte Chemie 2014 Volume 126( Issue 29) pp:7778-7782
Publication Date(Web):
DOI:10.1002/ange.201403403
Abstract
Es wird eine vielseitig einsetzbare Methode zur Herstellung von funktionalisierten 2,2′:6′,2′′-Terpyridinen vorgestellt, bei der die äußeren Pyridinringe über Cyclisierungsreaktionen aufgebaut werden. Die Vorstufen – Bis-β-ketoenamide – werden aus in 4-Position substituierten 2,6-Pyridindicarbonsäuren und Acetylaceton oder dem entsprechenden Enaminoketon hergestellt. Ihre Cyclisierung erfolgt mithilfe von Trifluormethansulfonsäuretrimethylsilylester durch eine zweifache intramolekulare Kondensation. Die Methode bietet einen effizienten Zugang zu 4,4′′-di- und 4,4′,4′′-trifunktionalisierten 6,6′′-Dimethyl-2,2′:6′,2′′-terpyridinen und ermöglicht die Herstellung bislang unbekannter 4,4′′-Bis(dimethylamino)- und 4,4′,4′′-Tris(dimethylamino)terpyridine, für die extrem hohe Lewis-Basizitäten berechnet wurden.
Co-reporter:Dr. Paul Hommes;Christina Fischer;Dr. Christoph Lindner;Dr. Hendrik Zipse;Dr. Hans-Ulrich Reissig
Angewandte Chemie International Edition 2014 Volume 53( Issue 29) pp:7647-7651
Publication Date(Web):
DOI:10.1002/anie.201403403
Abstract
A versatile method for the synthesis of functionalized 2,2′:6′,2′′-terpyridines by assembly of the terminal pyridine rings is presented. The cyclization precursors—bis-β-ketoenamides—are prepared from 4-substituted 2,6-pyridinedicarboxylic acids and acetylacetone or its corresponding enamino ketone. Treatment with trimethylsilyl trifluoromethanesulfonate induces a twofold intramolecular condensation providing an efficient access to 4,4′′-di- and 4,4′,4′′-trifunctionalized 6,6′′-dimethyl-2,2′:6′,2′′-terpyridines. Using this method, hitherto unknown 4,4′′-bis(dimethylamino)- and 4,4′,4′′-tris(dimethylamino)terpyridines have been prepared that show remarkably high calculated Lewis basicities.
Co-reporter:Florian Achrainer, Vladimir N. Emel’yanenko, Waled Tantawy, Sergey P. Verevkin, and Hendrik Zipse
The Journal of Physical Chemistry B 2014 Volume 118(Issue 35) pp:10426-10429
Publication Date(Web):August 11, 2014
DOI:10.1021/jp507855k
Using a combined theoretical and experimental strategy, the heats of hydrogenation of the nucleotide bases uracil, thymine, cytosine, adenine, and guanine have been determined. The most easily hydrogenated base is uracil, followed by thymine and cytosine. Comparison of these hydrogenation enthalpies with those of ketones and aldehydes derived from sugar models indicates the possibility of near-thermoneutral hydrogen transfer between uracil and the sugar phosphate backbone in oligonucleotides.
Co-reporter:Pascal Patschinski, Cong Zhang, and Hendrik Zipse
The Journal of Organic Chemistry 2014 Volume 79(Issue 17) pp:8348-8357
Publication Date(Web):July 31, 2014
DOI:10.1021/jo5016568
Reaction rates for the base-catalyzed silylation of primary, secondary, and tertiary alcohols depend strongly on the choice of solvent and catalyst. The reactions are significantly faster in Lewis basic solvents such as dimethylformamide (DMF) compared with those in chloroform or dichloromethane (DCM). In DMF as the solvent, the reaction half-lives for the conversion of structurally similar primary, secondary, and tertiary alcohols vary in the ratio 404345:20232:1. The effects of added Lewis base catalysts such as 4-N,N-dimethylaminopyridine (DMAP) or 4-pyrrolidinopyridine (PPY) are much larger in apolar solvents than in DMF. The presence of an auxiliary base such as triethylamine is required in order to drive the reaction to full conversion.
Co-reporter:Raman Ton;Tobias A. Nigst
European Journal of Organic Chemistry 2013 Volume 2013( Issue 24) pp:5423-5430
Publication Date(Web):
DOI:10.1002/ejoc.201300486
Abstract
The influence of the length of alkyl substituents on various kinetic, thermodynamic, and spectroscopic properties of 4-(dialkylamino)pyridines has been determined by using a combination of experimental and theoretical methods. The chain-length dependence of these properties has subsequently been analyzed by using a quantitative model for through-bond inductive effects.
Co-reporter:Raman Ton;Teresa Unzner;Dr. Tobias A. Nigst;Dr. Nicolas DeRycke;Dr. Peter Mayer;Dr. Bernd Wendt;Dr. Olivier R. P. David;Dr. Hendrik Zipse
Chemistry - A European Journal 2013 Volume 19( Issue 20) pp:6435-6442
Publication Date(Web):
DOI:10.1002/chem.201204452
Abstract
New heterocyclic derivatives of 9-azajulolidine have been synthesized and characterized with respect to their nucleophilicity and Lewis basicity. The Lewis basicity of these bases as quantified through their theoretically calculated methyl-cation affinities correlate well with the experimentally measured reaction rates for addition to benzhydryl cations. All newly synthesized pyridines show exceptional catalytic activities in benchmark acylation reactions, which correlate only poorly with Lewis basicity or nucleophilicity parameters. A combination of Lewis basicity with charge and geometric parameters in the framework of a three-component quantitative structure–activity relationship (QSAR) model is, however, highly predictive.
Co-reporter:Dr. Christoph Lindner;Dr. Yinghao Liu; Konstantin Karaghiosoff;Dr. Boris Maryasin ; Hendrik Zipse
Chemistry - A European Journal 2013 Volume 19( Issue 20) pp:6429-6434
Publication Date(Web):
DOI:10.1002/chem.201204006
Abstract
The aza-Morita-Baylis–Hillman (aza-MBH) reaction has been studied in a variety of solvents, a selection of imine substrates and with various combinations of PPh3 and para-nitrophenol as the catalyst system. The measured kinetic data indicates that the effects of solvent and protic co-catalyst are strongly interdependent. These results are most easily reconciled with a mechanistic model involving the reversible protonation of zwitterionic intermediates in the catalytic cycle, which is also supported by 31P NMR spectroscopy and quantum chemical studies.
Co-reporter:Stephanie Seel;Dr. Guillaume Dagousset;Dr. Tobias Thaler;Annette Frischmuth;Dr. Konstantin Karaghiosoff;Dr. Hendrik Zipse;Dr. Paul Knochel
Chemistry - A European Journal 2013 Volume 19( Issue 14) pp:4614-4622
Publication Date(Web):
DOI:10.1002/chem.201204076
Abstract
We have developed a practical stereoretentive iodine/lithium-exchange process that allows the stereodefined preparation of cis- and trans-cycloalkyllithium compounds from their corresponding stereodefined iodides. Quenching with electrophiles offers stereospecific access to both cis- (up to 96 % cis) and trans-cycloalkyl derivatives (up to 99 % trans). A detailed study of the thermodynamic stabilities, stereochemical behavior, and reactivities of axially and equatorially substituted cyclohexyllithium reagents is reported. Ab initio calculations demonstrate that the formation of oligomeric cyclohexyllithium structures is pivotal for explaining the observed stereochemical preference.
Co-reporter:Evgeny Larionov ; Mohan Mahesh ; Alan C. Spivey ; Yin Wei
Journal of the American Chemical Society 2012 Volume 134(Issue 22) pp:9390-9399
Publication Date(Web):May 8, 2012
DOI:10.1021/ja302420g
The mechanism of esterification of the secondary alcohol 1-(1-naphthyl)ethanol 9 by isobutyric anhydride catalyzed by 4-pyrrolidinopyridine (PPY, 11) and a series of single enantiomer atropisomeric 4-dialkylaminopyridines 8a–g has been studied computationally at the B3LYP/6-311+G(d,p)//B3LYP/6-31G(d) level. Comparison of the levels of enantioselectivity predicted computationally with the results obtained experimentally allowed the method to be validated. The value of the approach is demonstrated by the successful prediction that a structural modification of an aryl group within the catalyst from phenyl to 3,5-dimethylphenyl would lead to improved levels of selectivity in this type of kinetic resolution (KR) reaction, as was subsequently verified following synthesis and evaluation of this catalyst (8d). Experimentally, the selectivity of this type of KR is found to exhibit a significant deuterium isotope effect (for 9 vs d1-9).
Co-reporter:Christoph Lindner, Raman Tandon, Yinghao Liu, Boris Maryasin and Hendrik Zipse
Organic & Biomolecular Chemistry 2012 vol. 10(Issue 16) pp:3210-3218
Publication Date(Web):15 Feb 2012
DOI:10.1039/C2OB07058H
The aza-Morita–Baylis–Hillman (azaMBH) reaction has been studied for electronically and sterically deactivated Michael acceptors. It is found that electronically deactivated systems can be converted with electron-rich phosphanes and pyridines as catalysts equally well. For sterically deactivated systems clearly better catalytic turnover can be achieved with pyridine catalysts. This is in accordance with the calculated affinities of the catalysts towards different Michael-acceptors.
Co-reporter:Evgeny Larionov;Florian Achrainer;Jowita Humin ;Dr. Hendrik Zipse
ChemCatChem 2012 Volume 4( Issue 4) pp:559-566
Publication Date(Web):
DOI:10.1002/cctc.201100313
Abstract
A larger number of catalysts based on the 3,4-diaminopyridine motif have been synthesized and tested in the acetylation of tertiary alcohols. The rate data determined in these reactions together with results from previous studies were compared with theoretical data describing the ground and transition state properties of the respective catalysts. Surprisingly, it was found that the ground state data provided a better overall description of the catalytic activity than the transition state models. The latter approach clearly showed the presence of separate correlations for catalysts with small, but significant topological differences. Full analysis of the potential energy surface revealed that this owes to changes in the rate limiting step in the catalytic cycle.
Co-reporter:Johnny Hioe ;Dr. Hendrik Zipse
Chemistry - A European Journal 2012 Volume 18( Issue 51) pp:16463-16472
Publication Date(Web):
DOI:10.1002/chem.201202869
Abstract
S-Adenosylmethionine (SAM) plays an essential role in a variety of enzyme-mediated radical reactions. One-electron reduction of SAM is currently believed to generate the C5′-desoxyadenosyl radical, which subsequently abstracts a hydrogen atom from the actual substrate in a catalytic or a non-catalytic fashion. Using a combination of theoretical and experimental bond dissociation energy (BDE) data, the energetics of these radical processes have now been quantified. SAM-derived radicals are found to react with their respective substrates in an exothermic fashion in enzymes using SAM in a stoichiometric (non-catalytic) way. In contrast, the catalytic use of SAM appears to be linked to a sequence of moderately endothermic and exothermic reaction steps. The use of SAM in spore photoproduct lyase (SPL) appears to fit neither of these general categories and appears to constitute the first example of a SAM-initiated radical reaction propagated independently of the cofactor.
Co-reporter:Boris Maryasin and Hendrik Zipse
Physical Chemistry Chemical Physics 2011 vol. 13(Issue 11) pp:5150-5158
Publication Date(Web):10 Feb 2011
DOI:10.1039/C0CP02653K
Selected theoretical methods, basis sets and solvation models have been tested in their ability to predict 31P NMR chemical shifts of large phosphorous-containing molecular systems in solution. The most efficient strategy was found to involve NMR shift calculations at the GIAO-MPW1K/6-311++G(2d,2p)//MPW1K/6-31G(d) level in combination with a dual solvation model including the explicit consideration of single solvent molecules and a continuum (PCM) solvation model. For larger systems it has also been established that reliable 31P shift predictions require Boltzmann averaging over all accessible conformations in solution.
Co-reporter:Valerio D'Elia;Yinghao Liu
European Journal of Organic Chemistry 2011 Volume 2011( Issue 8) pp:1527-1533
Publication Date(Web):
DOI:10.1002/ejoc.201001507
Abstract
The copper-catalyzed Huisgen reaction between azides and alkynes was utilized to covalently attach derivatives of 4-(dimethylamino)pyridine (DMAP) to a polystyrene resin (PS) support. The catalytic potential of these constructs as determined in acylation and aza-Morita–Baylis–Hillman reactions far exceeds that of commercially available DMAP-PS resins and is fully competitive with DMAP in homogeneous solution.
Co-reporter:Christian A. Kuttruff;Dr. Hendrik Zipse; Dirk Trauner
Angewandte Chemie International Edition 2011 Volume 50( Issue 6) pp:1402-1405
Publication Date(Web):
DOI:10.1002/anie.201006154
Co-reporter:Johnny Hioe;Gökcen Savasci;Dr. Harald Br ;Dr. Hendrik Zipse
Chemistry - A European Journal 2011 Volume 17( Issue 13) pp:3781-3789
Publication Date(Web):
DOI:10.1002/chem.201002620
Abstract
The conformational space of dipeptide models derived from glycine, alanine, phenylalanine, proline, tyrosine, and cysteine has been searched extensively and compared with the corresponding Cα dipeptide radicals at the G3(MP2)-RAD level of theory. The results indicate that the (least-substituted) glycine dipeptide radical is the thermochemically most stable of these species. Analysis of the structural parameters indicates that this is due to repulsive interactions between the Cα substituents and peptide units in the radical. A comparison of the conformational preferences of dipeptide radicals and their closed-shell parents also indicates that radical stability is a strongly conformation-dependent property.
Co-reporter:Johnny Hioe and Hendrik Zipse
Organic & Biomolecular Chemistry 2010 vol. 8(Issue 16) pp:3609-3617
Publication Date(Web):11 Jun 2010
DOI:10.1039/C004166A
The thermodynamic stability of carbon-centered radicals may be defined in quantitative terms using the hydrogen transfer reaction shown in eqn (a). The stability values obtained in this way for substituted systems may be understood as the stabilizing or destabilizing influence of substituents on the neighboring radical center. This approach can be easily adapted to oxygen- or sulfur-centered radicals as expressed in eqn (b). The stability values obtained in this way do not only serve as a quantitative basis for the discussion of substituent effects, but also allow for quantitative estimates of reaction energies for hydrogen transfer reactions. These occur as key steps in a multitude of synthetically useful radical-chain processes in apolar solution, in enzyme-mediated non-chain processes in biological systems, and in the oxidative degradation of a variety of biomolecules. The review will highlight the usefulness of radical stability values for the rationalization of successful (and not so successful) synthetic radical reactions as well as the potential design of new radical reactions.
Co-reporter:Christoph Lindner;Boris Maryasin;Frank Richter
Journal of Physical Organic Chemistry 2010 Volume 23( Issue 11) pp:1036-1042
Publication Date(Web):
DOI:10.1002/poc.1726
Abstract
Methyl cation affinity (MCA) values have been calculated for a variety of phosphanes at the MP2(FC)/6-31+G(2d,p)//B98/6-31G(d) level of theory. The analysis of MCA values for tri-alkyl phosphanes reveals that substituent effects are additive for unbranched and cyclic alkyl substituents, and (with some modification) also for most of the branched alkyl substituents. Copyright © 2010 John Wiley & Sons, Ltd.
Co-reporter:Johnny Hioe;Amir Karton;JanM.L. Martin Dr. Dr.
Chemistry - A European Journal 2010 Volume 16( Issue 23) pp:6861-6865
Publication Date(Web):
DOI:10.1002/chem.200903395
Abstract
Radical stabilization energies (RSE)s have been calculated for a variety of boryl radicals complexed to Lewis bases at the G3(MP2)-RAD level of theory. These are referenced to the BH bond dissociation energy (BDE) in BH3 determined at W4.3 level. High RSE values (and thus low BDE(BH) values) have been found for borane complexes of a variety of five- and six-membered ring heterocycles. Variations of RSE values have been correlated with the strength of Lewis acid–Lewis base complex formation at the boryl radical stage. The analysis of charge- and spin-density distributions shows that spin delocalization in the boryl radical complexes constitutes one of the mechanisms of radical stabilization.
Co-reporter:Heiner Detert;Dieter Lenoir
European Journal of Organic Chemistry 2009 Volume 2009( Issue 8) pp:1181-1190
Publication Date(Web):
DOI:10.1002/ejoc.200801076
Abstract
We have prepared trans- (1) and cis-octachloro-1,3,5-hexatriene (2) by known routes and studied their thermal behavior experimentally and theoretically by ab initio calculations. The three double bonds in 1 and 2 are completely decoupled due to steric hindrance by the eight Cls, as indicated by calculations as well as the single-crystal X-ray structure of 1. The cis isomer 2 can be isomerized to the trans isomer 1 by heating it to 220–250 °C either neat or dissolved in high-boiling solvents, leading to a roughly 2:1 mixture of trans and cis isomers. Calculations at several different levels of theory predict 1 and 2 to be isoenergetic within 2 kJ mol–1. Unimolecular cis/trans isomerization is predicted to occur through an unusual vinylcyclobutene intermediate 7, whose formation faces a barrier of more than 150 kJ mol–1, but whose stability is comparable to that of 1 and 2. The isomerization rate is strongly enhanced by the addition of small amounts of Br2 or Cl2 or by 3 and can be explained by a radical-induced isomerization mechanism. The heating of trienes 1 and 2 to 250 °C leads to cyclization, yielding 71 % of the cyclopentene isomer 3. Compound 3 can be dechlorinated by treatment with copper powder to give fulvene derivative 4. Using flash vacuum pyrolysis, the thermal conversion of trienes 1 and 2 to hexachlorobenzene (5) occurs at higher temperatures between 600–1000 °C, likely via perchlorinated 1,3-cyclohexadiene (6) as an intermediate. The elimination of molecular Cl2 from 3 and 6 requires very high activitation energies in agreement with calculations.(© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2009)
Co-reporter:I. Held;P. vondenHoff;D.S. Stephenson ;H. Zipse
Advanced Synthesis & Catalysis 2008 Volume 350( Issue 11-12) pp:1891-1900
Publication Date(Web):
DOI:10.1002/adsc.200800268
Abstract
The combined use of high concentration conditions, auxiliary bases, and new catalysts allows for the rapid synthesis of sterically hindered carboxylic acid esters at room temperature. Mechanistic analysis indicates the intermediate formation of acid anhydrides and subsequent rate-limiting transformation to the ester products.
Co-reporter:Yin Wei
European Journal of Organic Chemistry 2008 Volume 2008( Issue 22) pp:3811-3816
Publication Date(Web):
DOI:10.1002/ejoc.200800294
Abstract
The tautomers I–IV of the marine metabolite 3-amino-1-(2-aminoimidazol-4-yl)prop-1-ene (1) were previously suggested to have rather similar stabilities.1,2 Through a series of DFT and ab initio calculations, their relative stabilities were investigated in both the gas phase and in water, and also compared to their Z-isomers V–VIII. The tautomers I and III have almost identical stability in the gas phase and in water. The Z-isomer VII is more stable than other tautomers in the gas phase and quite competitive with I and III in water. The tautomers II and IV are much less stable and unlikely to coexist in equilibrium with I and III. The calculated pKa of 1-H+ of +10.9 suggests that 1 is fully protonated even under mildly acidic conditions. Protonation decreases the stability difference between the most stable tautomer III and the less stable tautomer IV.(© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2008)
Co-reporter:Waled Tantawy
European Journal of Organic Chemistry 2007 Volume 2007(Issue 35) pp:5817-5820
Publication Date(Web):2 NOV 2007
DOI:10.1002/ejoc.200700948
Hydrogen-transfer reactions between methyl radicals and protic solvents, such as water and ethanol, have been studied at the G3(MP2)-RAD level of theory. The typically high barriers for hydrogen abstraction from the OH group are lowered dramatically on complexation of protic solvents with BMe3. The barrier lowering is found to be a consequence of the unique properties of trialkylboranes, acting as Lewis acids towards the closed-shell solvent, but as electron donors towards the evolving oxygen-centered radicals.(© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2007)
Co-reporter:Yin Wei, Ingmar Held and Hendrik Zipse
Organic & Biomolecular Chemistry 2006 vol. 4(Issue 22) pp:4223-4230
Publication Date(Web):13 Oct 2006
DOI:10.1039/B610140B
The conformational properties and the stability of acylpyridinium intermediates formed in pyridine-catalyzed acylation reactions have been studied at the SCS-MP2(FC)/6-311+G(d,p)//MP2(FC)/6-31G(d) level of theory. It has been shown that stacking interactions can play a decisive role in the stability as well as the conformational preferences of these transient intermediates.
Co-reporter:Christian B. Fischer Dr.;Shangjie Xu Dr. Dr.
Chemistry - A European Journal 2006 Volume 12(Issue 22) pp:
Publication Date(Web):23 MAY 2006
DOI:10.1002/chem.200600280
The kinetics of the reaction of several alcohols (benzyl alcohol, ethanol, 1-phenylethanol, cyclohexanol, and 1-methyl-1-phenylethanol) with a selection of anhydrides (acetic anyhydride, propionic anhydride, isobutyric anhydride, isovaleric anhydride, and pivalic anhydride) as catalyzed by 4-(N,N-dimethylamino)pyridine (DMAP)/triethyl amine have been studied in CH2Cl2 at 20 °C. In all cases the reaction kinetics can be described by rate laws containing a DMAP-catalyzed term and an uncatalyzed (background) term. The rate constants for the background reaction respond sensitively to changes in the steric demand of the alcohol and the anhydride substrates, making the reaction of cyclohexanol with acetic anhydride 526 times faster than the reaction with pivalic anhydride. Steric effects are even larger for the catalyzed reaction and the reactivity difference between acetic and pivalic anhydride exceeds a factor of 8000 for the reaction of cyclohexanol. There is, however, no linear correlation between the steric effects on the catalyzed and the uncatalyzed part. As a consequence there are substrate combinations with dominating catalytic terms (such as the reaction of benzyl alcohol with isobutyric anhydride), while other substrate combinations (such as the reaction of cyclohexanol with pivalic anhydride) are characterized through a dominating background process. The implications of these findings for the kinetic resolution of alcohols are discussed.
Co-reporter:Christian B. Fischer;David S. Stephenson;Harald Steininger
Journal of Physical Organic Chemistry 2005 Volume 18(Issue 9) pp:901-907
Publication Date(Web):21 FEB 2005
DOI:10.1002/poc.914
The influence of a series of alkyl-substituted 3-cyano-2-pyridones on the kinetics of the reaction of p-nitrophenyl acetate (10) with n-butylamine (9) was studied. The reactions were monitored under pseudo-first-order conditions using an excess of n-butylamine by 1H NMR spectroscopy at 23°C in CDCl3. A non-linear dependence of the observed rate constants kobs on the pyridone concentration was observed in all cases. The results were analysed using two different kinetic models. The first model is based on the amine-catalysed background reaction in combination with a pyridone-catalysed process, whose efficiency is reduced through dimerization of the pyridone catalyst to an inactive dimer. The second model also involves the amine-catalysed background process, now in combination with a catalysed process proceeding through pre-equilibrium complexation of the substrate with a 1:1 amine–pyridone complex and a second (rate-determining) step involving C—N bond formation. In addition to these kinetic studies, the aggregation behaviour of pyridones 2 and 3 was also studied in pure deuteriochloroform solutions and mixtures of n-butylamine and deuteriochloroform. While substantial aggregation to dimers occurs for both pyridones in deuteriochloroform, no such dimerization appears to occur in deuteriochloroform solutions containing 250 × 10−3 mol l−1n-butylamine. This finding strongly supports kinetic model 2 as the more realistic choice. Copyright © 2005 John Wiley & Sons, Ltd.
Co-reporter:Hans-Friedrich Grützmacher, Michael Büchner, Hendrik Zipse
International Journal of Mass Spectrometry 2005 Volume 241(Issue 1) pp:31-42
Publication Date(Web):15 February 2005
DOI:10.1016/j.ijms.2004.10.012
Continuing the studies of ion/molecule reactions of haloalkene radical cations with nucleophiles, the reactions of the radical cations of 2-chloropropene, 1+, and 2-bromopropene. 2+, with methanol and ethanol, respectively, have been investigated by FT-ICR spectrometry and by computational analysis using DFT calculation (BHLYP/6–311 + G(2d,p)//BHLYP/6–31 + G(d) level). Only slow reactions (reaction efficiency <1%) are observed for 1+/methanol and 2+/methanol. Slow proton transfer is the main process for 1+/methanol besides minor addition of methanol to 1+ followed by loss of HCl or Cl. Addition of methanol accompanied by loss of Br is the exclusive process observed for 2+/methanol. In contrast, both 1+ and 2+ react efficiently with ethanol yielding protonated acetaldehyde as the exclusive (1+) or by far dominant (2+) primary reaction product. The computational analysis of these ion/molecule reactions shows that in the case of 1+/methanol and 2+/methanol all processes are either endothermic or blocked by large activation energies. Nonetheless, addition of methanol to the ionized CC double bond of 1+ or 2+ is exothermic, yielding in each case a pair of isomeric β-distonic methoxonium ions. A new reaction mechanism has been found for the HX (X = Cl, Br) elimination from the less stable isomer of the distonic intermediates. Further, an energetically favorable transition state has been detected for hydrogen atom transfer from the α-CH2 group of alcohol to the halogenoalkene radical cations. These findings lead to a revised mechanism of the oxidation process and provide a plausible explanation for the excessive H/D exchange between 1+ and CD3OH during their slow reaction.
Co-reporter:Shangjie Xu Dr.;Ingmar Held Dipl.-Chem.;Bernhard Kempf Dr.;Herbert Mayr ;Wolfgang Steglich Dr. Dr.
Chemistry - A European Journal 2005 Volume 11(Issue 16) pp:
Publication Date(Web):27 MAY 2005
DOI:10.1002/chem.200500398
The acetylation of tert-butanol with acetic anhydride catalyzed by 4-(dimethylamino)pyridine (DMAP) has been studied at the Becke3 LYP/6-311+G(d,p)//Becke3 LYP/6-31G(d) level of theory. Solvent effects have been estimated through single-point calculations with the PCM/UAHF solvation model. The energetically most favorable pathway proceeds through nucleophilic attack of DMAP at the anhydride carbonyl group and subsequent formation of the corresponding acetylpyridinium/acetate ion pair. Reaction of this ion pair with the alcohol substrate yields the final product, tert-butylacetate. The competing base-catalyzed reaction pathway can either proceed in a concerted or in a stepwise manner. In both cases the reaction barrier far exceeds that of the nucleophilic catalysis mechanism. The reaction mechanism has also been studied experimentally in dichloromethane through analysis of the reaction kinetics for the acetylation of cyclohexanol with acetic anhydride, in the presence of DMAP as catalyst and triethylamine as the auxiliary base. The reaction is found to be first-order with respect to acetic anhydride, cyclohexanol, and DMAP, and zero-order with respect to triethyl amine. Both the theoretical as well as the experimental studies strongly support the nucleophilic catalysis pathway.
Co-reporter:David M. Smith Dr.;Wolfgang Buckel Dr. Dr.
Angewandte Chemie 2003 Volume 115(Issue 16) pp:
Publication Date(Web):23 APR 2003
DOI:10.1002/ange.200250502
Ein halbes Jahrhundert zählt der Vorschlag, dass Enoxy-Radikale in β-C-Position eine erhöhte Acidität aufweisen, die von Enzymen zur Protonenabstraktion aus einem nichtaktivierten Thioester genutzt werden könnte. Anhand von Ab-initio-Rechnungen in Kombination mit Solvatationsmodellen wird nun ein pKS-Wert der β-CH-Gruppe eines Modell-Enoxy-Radikals von 14 vorausgesagt. Gegenüber der nichtaktivierten β-CH-Gruppe eines geschlossenschaligen Thioesters entspricht dies einer Aciditätserhöhung von 25 Größenordnungen (siehe Schema).
Co-reporter:David M. Smith Dr.;Wolfgang Buckel Dr. Dr.
Angewandte Chemie International Edition 2003 Volume 42(Issue 16) pp:
Publication Date(Web):23 APR 2003
DOI:10.1002/anie.200250502
The enhanced acidity at the β position of enoxy radicals may allow enzymes to abstract an aliphatic proton from an unactivated thioester. Although this phenomenon was proposed half a century ago, validation has now been found by combining high-level ab initio calculations with both implicit and explicit representations of aqueous solvation, and a pKa value of 14 for the β-H atom of a model enoxy radical was predicted. Relative to the unactivated β-H atom of the closed-shell thioester, this corresponds to an acidity enhancement of over 25 orders of magnitude (see scheme).
Co-reporter:Hendrik Zipse and Michael Bootz
Organic & Biomolecular Chemistry 2001 (Issue 9) pp:1566-1572
Publication Date(Web):31 Jul 2001
DOI:10.1039/B103324G
The acyloxy rearrangement in 2-(acetyloxy)-2-methyl-1-propyl radical (1a) and in 2-(trifluoroacetyloxy)-2-methyl-1-propyl radical (1b) has been investigated with a number of theoretical methods. In both systems the most favorable reaction pathway for 1,2-acyloxy rearrangement leads through a five-membered ring transition state in a concerted fashion. A second pathway through a three-membered ring transition state is only slightly less favorable, while the addition–elimination process through a cyclic 1,3-dioxolan-2-yl radical intermediate has significantly higher barriers. Stationary points corresponding to a contact ion pair could not be found. With respect to the most favorable reaction pathway, the barrier difference between substrates 1a and 1b amounts to 2.5 ± 0.1 kcal mol−1
at a variety of theoretical levels. Solvent effects for the concerted pathways in hydrocarbon solvents, alcohols, and water have been calculated using the PCM scheme and found to be of rather limited magnitude. The barrier difference for reaction of 1a in hydrocarbon solvents (cyclohexane, benzene) and in water was estimated to be around 1 kcal mol−1. Based on kinetic isotope effects calculated for the [3,2]- and [1,2]-acyloxy rearrangement processes a differentiation of pathways is most easily possible through the strongly inverse deuterium isotope effects for d2-labeling of the radical center in 1 and through the ratio of the 18O isotope effects on the carboxylate oxygen atoms.
Co-reporter:Matthias Mohr Dr.;Dominik Marx Dr.;Michele Parrinello Dr. Dr.
Chemistry - A European Journal 2000 Volume 6(Issue 21) pp:
Publication Date(Web):13 OCT 2000
DOI:10.1002/1521-3765(20001103)6:21<4009::AID-CHEM4009>3.0.CO;2-G
The solvation and reaction of ethylene radical cation in aqueous solution has been studied with Car–Parrinello molecular dynamics simulations. All ab initio simulations were performed using a system of 56 water and one ethylene molecule. Using a favorable symmetrically solvated radical cation as the starting point of the simulation a fast addition of water (within 90 fs) to the radical cation is observed. The primary addition product is rapidly deprotonated (within 100 fs) to yield the ethanol-2-yl radical. A second simulation was initiated through vertical ionization of neutral hydrated ethylene, representing a significantly less favorable situation for the addition process. No addition of water can be observed in this second simulation over a time span of 1.7 ps. Taken together the two simulations are indicative of a rearrangement of the solvent shell which represents the major part of the overall reaction barrier. Under these circumstances, the reaction rate of an otherwise spontaneous reaction is limited by the intrinsic solvent relaxation time. This interpretation of the reactivity of hydrated radical cations reconciles previously conflicting experimental condensed phase and theoretical gas phase studies.
Co-reporter:M. Mohr;H. Zipse
Chemistry - A European Journal 1999 Volume 5(Issue 10) pp:
Publication Date(Web):24 SEP 1999
DOI:10.1002/(SICI)1521-3765(19991001)5:10<3046::AID-CHEM3046>3.0.CO;2-J
How do ribonucleotide reductases functionalize CH bonds? Theoretical studies of small model systems for the C−H bond activation step in ribonucleotide reductases predict that carboxylates are efficient catalysts. The catalytic efficiency is due to the formation of a short strong hydrogen bond, which is strongest in the transition state (illustrated here) for hydrogen-atom transfer to the electrophilic thiyl radical.
Co-reporter:Johnny Hioe and Hendrik Zipse
Organic & Biomolecular Chemistry 2010 - vol. 8(Issue 16) pp:NaN3617-3617
Publication Date(Web):2010/06/11
DOI:10.1039/C004166A
The thermodynamic stability of carbon-centered radicals may be defined in quantitative terms using the hydrogen transfer reaction shown in eqn (a). The stability values obtained in this way for substituted systems may be understood as the stabilizing or destabilizing influence of substituents on the neighboring radical center. This approach can be easily adapted to oxygen- or sulfur-centered radicals as expressed in eqn (b). The stability values obtained in this way do not only serve as a quantitative basis for the discussion of substituent effects, but also allow for quantitative estimates of reaction energies for hydrogen transfer reactions. These occur as key steps in a multitude of synthetically useful radical-chain processes in apolar solution, in enzyme-mediated non-chain processes in biological systems, and in the oxidative degradation of a variety of biomolecules. The review will highlight the usefulness of radical stability values for the rationalization of successful (and not so successful) synthetic radical reactions as well as the potential design of new radical reactions.
Co-reporter:Johnny Hioe, Davor Šakić, Valerije Vrček and Hendrik Zipse
Organic & Biomolecular Chemistry 2015 - vol. 13(Issue 1) pp:NaN169-169
Publication Date(Web):2014/10/16
DOI:10.1039/C4OB01656D
Radical stabilization energies (RSEs) for a wide variety of nitrogen-centered radicals and their protonated counterparts have been calculated at G3(MP2)-RAD and G3B3 level. The calculated RSE values can be rationalized through the combined effects of resonance delocalization of the unpaired spin, electron donation through adjacent alkyl groups or lone pairs, and through inductive electron donation/electron withdrawal. The influence of ring strain effects as well as the synergistic combination of individual substituent effects (captodatively stabilized N-radicals) have also been explored. In symmetric N-radicals the substituents may also affect the relative ordering of electronic states. In most cases the π-type radical (unpaired spin distribution perpendicular to the plane of the N-radical) is found to be most stable. Closed shell precursors of biological and pharmaceutical relevance, for which neither experimental nor theoretical results on radical stabilities exist, have been included.
Co-reporter:Christoph Lindner, Raman Tandon, Yinghao Liu, Boris Maryasin and Hendrik Zipse
Organic & Biomolecular Chemistry 2012 - vol. 10(Issue 16) pp:NaN3218-3218
Publication Date(Web):2012/02/15
DOI:10.1039/C2OB07058H
The aza-Morita–Baylis–Hillman (azaMBH) reaction has been studied for electronically and sterically deactivated Michael acceptors. It is found that electronically deactivated systems can be converted with electron-rich phosphanes and pyridines as catalysts equally well. For sterically deactivated systems clearly better catalytic turnover can be achieved with pyridine catalysts. This is in accordance with the calculated affinities of the catalysts towards different Michael-acceptors.
Co-reporter:Cong Zhang, Pascal Patschinski, David S. Stephenson, Robin Panisch, Josef Heinrich Wender, Max C. Holthausen and Hendrik Zipse
Physical Chemistry Chemical Physics 2014 - vol. 16(Issue 31) pp:NaN16650-16650
Publication Date(Web):2014/06/27
DOI:10.1039/C4CP01736F
Aiming at the identification of an efficient computational protocol for the accurate NMR assessment of organosilanes in low-polarity organic solvents, 29Si NMR chemical shifts of a selected set of such species relevant in organic synthesis have been calculated relative to tetramethylsilane (TMS, 1) using selected density functional and perturbation theory methods. Satisfactory results are obtained when using triple zeta quality basis sets such as IGLO-III. Solvent effects impact the calculated results through both, changes in substrate geometry as well as changes in the actual shieldings. Spin–orbit (SO) corrections are required for systems carrying more than one chlorine atom directly bonded to silicon. Best overall results are obtained using gas phase geometries optimized at MPW1K/6-31+G(d) level in combination with shielding calculations performed at MPW1K/IGLO-III level in the presence of the PCM continuum solvation model.
Co-reporter:Boris Maryasin and Hendrik Zipse
Physical Chemistry Chemical Physics 2011 - vol. 13(Issue 11) pp:NaN5158-5158
Publication Date(Web):2011/02/10
DOI:10.1039/C0CP02653K
Selected theoretical methods, basis sets and solvation models have been tested in their ability to predict 31P NMR chemical shifts of large phosphorous-containing molecular systems in solution. The most efficient strategy was found to involve NMR shift calculations at the GIAO-MPW1K/6-311++G(2d,2p)//MPW1K/6-31G(d) level in combination with a dual solvation model including the explicit consideration of single solvent molecules and a continuum (PCM) solvation model. For larger systems it has also been established that reliable 31P shift predictions require Boltzmann averaging over all accessible conformations in solution.