R. Alan Aitken

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Organization: University of St. Andrews
Department: EaStCHEM School of Chemistry
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Co-reporter:Marina Harras, Wolfgang Milius, R. Alan Aitken, and Rainer Schobert
The Journal of Organic Chemistry 2017 Volume 82(Issue 1) pp:579-587
Publication Date(Web):December 7, 2016
DOI:10.1021/acs.joc.6b02586
We report the syntheses of combretastatins D-2 and D-4 as well as a formal synthesis of combretastatin D-1 by a conceptually new route harnessing a ring-contracting flash vacuum pyrolytic extrusion of sulfur dioxide from the respective 16-membered sulfone precursors. Via flash vacuum pyrolysis, even metaparacyclophanes as small and strained as the hitherto unknown oxa[1.5]metaparacyclophane could be prepared as a side product en route to combretastatin D-2 by synchronous extrusion of SO2 and CO2.
Co-reporter:R. Alan Aitken, Lorna Murray
Tetrahedron Letters 2017 Volume 58, Issue 46(Issue 46) pp:
Publication Date(Web):15 November 2017
DOI:10.1016/j.tetlet.2017.09.073
•Six different stabilised phosphorus ylides suitable for cascade cyclization have been prepared.•Pyrolysis mainly gives styrylquinolines accompanied by other fused-ring quinolines and carbazoles.•With a ring methyl present the quinoline is accompanied by the furocarbazole natural product Eustifoline D.•Eustifoline D is formed in 5 steps from 5-methylanthranilic acid.Six stabilised phosphonium ylides bearing ortho-benzylaminophenyl and cinnamoyl (or a heterocyclic analogue) groups have been prepared and upon flash vacuum pyrolysis at 800 °C were found to undergo cascade cyclization processes to give mainly 3-styrylquinolines but also in some cases ring-fused carbazoles and other fused-ring heterocyclic products. By starting with an appropriate ring-methylated precursor the natural product Eustifoline D was obtained in 19% yield in the pyrolysis in addition to the 3-(2-furylethenyl)quinoline (46%).Download high-res image (87KB)Download full-size image
Co-reporter:R. Alan Aitken, Youcef Boubalouta, Da Chang, Lee P. Cleghorn, Ian P. Gray, Nazira Karodia, Euan J. Reid, Alexandra M.Z. Slawin
Tetrahedron 2017 Volume 73, Issue 44(Issue 44) pp:
Publication Date(Web):2 November 2017
DOI:10.1016/j.tet.2017.09.016
A survey of 20 carbonyl-stabilised phosphonium ylides with recently reported X-ray structures shows a strong correlation between the CP to CO torsion angle and the value of 2JP–CO, with high values being associated with an anti configuration and low with syn. Seven new X-ray structural determinations are reported, several for types of ylide not crystallographically characterised before, and these also conform to this pattern. The value of 2JP–CO is then correlated with whether or not thermal extrusion of Ph3PO occurs to give alkynes for over 200 ylides and an empirical rule developed that the extrusion never occurs for ylides where this value is > 11 Hz. This is used to rationalise the anomalous behaviour of some trioxo ylides and cyclic ylides, two of which afford cycloalkynes, isolated after rearrangement as the isomeric 1,3-dienes. The rule also holds for a family of novel highly fluorinated ylides which afford fluorinated alkynes in good yield upon flash vacuum pyrolysis.Download high-res image (87KB)Download full-size image
Co-reporter:R. Alan Aitken, Philip K.G. Hodgson, Adebayo O. Oyewale
Journal of Analytical and Applied Pyrolysis 2017 Volume 124(Volume 124) pp:
Publication Date(Web):1 March 2017
DOI:10.1016/j.jaap.2016.12.028
•FVP over magnesium couples benzylidene chlorides to give mainly stilbenes.•Ortho-methoxybenzylidene chlorides unexpectedly give hydrocarbon products.•Halogenated poly(p-xylylenes) are deposited direct from pyrolysis of halogenated p-xylenes.•Dichlorodiphenylmethane gives 9-(diphenylmethylene)fluorene and triphenylene is formed in moderate yield from 1,2-dihalobenzenes.•The method offers a convenient one-step solvent-free alternative to catalytic procedures.Flash vacuum pyrolysis at 600 °C through glass wool coated with freshly sublimed magnesium is examined as a preparative method for dehalogenative coupling in organic synthesis. Substituted benzylidene chlorides give predominantly the corresponding stilbenes and in some cases these are readily isolated in pure form. With an ortho-halogen substituent, additional cyclisation gives phenanthrenes but the method is not compatible with the presence of several reactive groups. An ortho-methoxy substituent leads to unexpected formation of mono- and dimethyl products. With 1,4-bis(dihalomethyl)benzenes, halogenated polymers are deposited directly from the gas phase via generation of halogenated p-xylylenes. The 1,2- and 1,3-isomers lead respectively to benzocyclobutadiene, isolated as a dimer, and to pyrene. The 1,4-bis(trihalomethyl)benzenes give more highly halogenated polymers directly from the gas phase via halogenated p-xylylenes. While halobenzenes generally give the corresponding benzenes and biphenyls, 1,2-dihalobenzenes additionally produce triphenylene in preparatively useful yield by a process not involving intermediacy of free benzyne.Download high-res image (145KB)Download full-size image
Co-reporter:R. Alan Aitken, Nazira Karodia, Hollie B. McCarron, Cécile Rouxel, Nina Sahabo and Alexandra M. Z. Slawin  
Organic & Biomolecular Chemistry 2016 vol. 14(Issue 5) pp:1794-1804
Publication Date(Web):05 Jan 2016
DOI:10.1039/C5OB02467F
A range of twelve stabilised phosphonium ylides containing tetrahydrofuran, tetrahydropyran or 2,2-dimethyl-1,3-dioxolane rings have been prepared and fully characterised, including one X-ray structure determination of each type. The X-ray structures confirm the PC and CO functions to be syn and all the compounds undergo thermal extrusion of Ph3PO to give the corresponding alkynes. In some cases there is also competing loss of Ph3P to give different carbene-derived products and evidence has been obtained for the generation of 2-phenyloxete in this way. Raising the pyrolysis temperature leads in several cases to new secondary reactions of the alkyne products involving a sequence of alkyne to vinylidene isomerisation, intramolecular CH insertion, and retro Diels Alder reaction.
Co-reporter:Kati M. Aitken, R. Alan Aitken and Alexandra M. Z. Slawin  
RSC Advances 2016 vol. 6(Issue 27) pp:22969-22972
Publication Date(Web):23 Feb 2016
DOI:10.1039/C6RA02735K
Cycloaddition of 3,4-dibromofuran with azo diesters proceeds by a Diels–Alder reaction followed by a novel rearrangement to give 3,5-dibromotetrahydropyridazin-4-ones. Variable-temperature NMR spectroscopy shows four separate conformations at low temperature attributed to restricted rotation about the carbamate functions. The ethyl compound decomposes upon storage with loss of the carbamate groups and aromatisation to give a simple bromohydroxypyridazinium salt.
Co-reporter:R. Alan Aitken, Siddharth J. Jethwa, Neville V. Richardson, Alexandra M.Z. Slawin
Tetrahedron Letters 2016 Volume 57(Issue 14) pp:1563-1566
Publication Date(Web):6 April 2016
DOI:10.1016/j.tetlet.2016.02.091
•Four different bromination products can be prepared without using CCl4.•Benzotrifluoride is a suitable CCl4 replacement for radical bromination.•The X-ray structure of a new dibromination product is presented.•The target dibromide is converted to sulfur-containing quinone derivatives.The NBS bromination of 1,4-dimethoxy-2,3-dimethylbenzene has been examined under a variety of conditions in both 1,1,1-trichloroethane and benzotrifluoride. Four different bromination products have been isolated including the previously unknown 1-bromo-4-bromomethyl-2,5-dimethoxy-3-methylbenzene whose single crystal X-ray structure is presented. The synthetically useful 2,3-bis(bromomethyl)-1,4-dimethoxybenzene is readily prepared using either solvent and it has been converted into new sulfur-containing quinone derivatives.
Co-reporter:R. Alan Aitken, Melanja H. Smith, Heather S. Wilson
Journal of Molecular Structure 2016 Volume 1113() pp:171-173
Publication Date(Web):5 June 2016
DOI:10.1016/j.molstruc.2016.02.030
•Both 1H and 13C NMR spectra confirm restricted rotation about the amide bond.•Spectra obtained in CDCl3 do not agree with published data which seems to be in error.•Variable temperature study in CD3SOCD3 gives a barrier to rotation of 75.6 kJ mol−1.N,N-bis(2-hydroxyethyl)acetamide shows restricted rotation about the amide bond in both 1H and 13C NMR spectra rendering the two hydroxyethyl groups non-equivalent. A variable temperature study in CD3SOCD3 allowed estimation of the free energy barrier to rotation as 75.6 ± 0.2 kJ mol−1. Previously published data in CDCl3 appears to be erroneous.
Co-reporter:R. Alan Aitken, Andrew D. Harper, and Alexandra M. Z. Slawin
The Journal of Organic Chemistry 2016 Volume 81(Issue 21) pp:10527-10531
Publication Date(Web):July 15, 2016
DOI:10.1021/acs.joc.6b01309
Treatment of 2- and 3-thienyloxazolines with butyllithium and bis(trimethylsilyl) peroxide results in ring hydroxylation to give products that exist mainly as the oxazolidinylidenethiophenones. The 3-oxazolidinylidenethiophen-2-one is a rare example of a stable heterocyclic o-quinone methide analogue that shows a varied pattern of reactivity, including both C- and O-alkylation, Michael addition via C-5 to an acetylenic ester, tetrachlorobenzannulation across positions 4 and 5, and formation of a hexacyclic fused-ring product with N-phenyltriazolinedione. Crystal structures of the products are dominated by inter- and intramolecular NH to CO hydrogen bonding.
Co-reporter:R. Alan Aitken and Adebayo O. Oyewale  
RSC Advances 2015 vol. 5(Issue 25) pp:19379-19381
Publication Date(Web):09 Feb 2015
DOI:10.1039/C4RA15004J
A range of halogenated methylthiophenes undergo dehalogenative condensation upon FVP over magnesium or calcium to give products including benzodithiophenes; in some cases this involves a novel rearrangement by equilibration of alkenylthienyl radicals via thiophene-fused cyclopropylmethyl intermediates.
Co-reporter:R. Alan Aitken, Clémence Hauduc, Ross S. McLennan, Alexandra M.Z. Slawin, Heather S. Wilson
Tetrahedron Letters 2015 Volume 56(Issue 15) pp:1937-1940
Publication Date(Web):8 April 2015
DOI:10.1016/j.tetlet.2015.02.003
Co-reporter:Kati M. Aitken;Callum I. MacGregor
Journal of Chemical Crystallography 2015 Volume 45( Issue 10-12) pp:461-465
Publication Date(Web):2015 December
DOI:10.1007/s10870-015-0615-x
2,4-Dibromothiazole [orthorhombic, a = 6.700 (10), b = 16.21 (3), c = 5.516 (8) Å, space group Fmm2] shows a disordered crystal structure with molecules randomly oriented with respect to the direction of the Br–C(2)–N–C(2)–Br unit and the remaining ring atoms S(3) and C(3)H showing mixed occupancy. 2,4-Diacetyl-5-bromothiazole [triclinic, a = 4.040 (2), b = 8.254 (5), c = 13.208 (8) Å, α = 96.191 (17), β = 93.865 (16), γ = 94.067 (11)°, space group P-1] shows a structure dominated by halogen bonding, intramolecular between 4-COMe and 5-Br and intermolecular between 2-COMe of one molecule and 5-Br of the next.
Co-reporter:Kati M. Aitken
Journal of Chemical Crystallography 2014 Volume 44( Issue 1) pp:25-29
Publication Date(Web):2014 January
DOI:10.1007/s10870-013-0478-y
N-(Acetylamino)phthalimide [monoclinic, a = 7.0228(15), b = 4.7285(8), c = 28.882(6) Å, β = 90.131(7)°, space group P21/c] shows an unusual crystal structure with marked pyramidalization at the phthalimide N and strong intermolecular NH to CO hydrogen bonding leading to the groups at the two ends of the hydrazine adopting an almost perpendicular arrangement. A survey of previous triacyl and tetraacyl hydrazine structures shows that both these features are unusual, with most examples being essentially planar at N and with torsion angles about the N–N bond of 63°–82°.
Co-reporter:R. Alan Aitken, Kati M. Aitken, Philip G. Carruthers, Marc-Alexandre Jean and Alexandra M. Z. Slawin  
Chemical Communications 2013 vol. 49(Issue 97) pp:11367-11369
Publication Date(Web):23 Oct 2013
DOI:10.1039/C3CC47801G
The fundamental heterocyclic compound 1,4-oxazine has been generated using FVP. It is the first parent heterocycle among all the possible isomeric oxazines, thiazines and their heavier atom analogues to be characterised spectroscopically, and is shown to exist in solution entirely as the 4H-isomer. X-ray structure determination of the N-Boc precursor shows significant deviations from theoretically predicted geometric parameters.
Co-reporter:R. Alan Aitken;Anna L. G. Gidlow
Journal of Chemical Crystallography 2013 Volume 43( Issue 2) pp:65-69
Publication Date(Web):2013 February
DOI:10.1007/s10870-012-0382-x
5-Chlorosalicylaldehyde [monoclinic, a = 3.800(2), b = 5.595(4), c = 15.174(11) Å, β = 93.221(17)°, space group P21] exhibits an unusual crystal structure with both intramolecular and intermolecular OH to CH=O hydrogen bonding, the latter leading to chains of molecules aligned along the b axis. A survey of previous substituted salicylaldehyde structures shows three main hydrogen bonding patterns: intramolecular only (14), intramolecular and intermolecular dimeric (5), and intramolecular and intermolecular polymeric (3).
Co-reporter:R. Alan Aitken, Bernd Fodi, Michael H. Palmer, Alexandra M.Z. Slawin, Jing Yang
Tetrahedron 2012 68(29) pp: 5845-5851
Publication Date(Web):
DOI:10.1016/j.tet.2012.05.004
Co-reporter:R. Alan Aitken;Lee P. Cleghorn;Rebecca M. Leitch;Louis C. Morrill ;Alexra M. Z. Slawin
European Journal of Organic Chemistry 2010 Volume 2010( Issue 17) pp:3211-3214
Publication Date(Web):
DOI:10.1002/ejoc.201000143

Abstract

Whereas biphenyl-4,4′-dicarbonyl dichloride reacts with methylenetriphenylphosphorane to give the expected bis(acylylide) 1, the same reaction of biphenyl-2,2′-dicarbonyl dichloride results in a multistep rearrangement leading to the zwitterionic 2-[1,3-bis(triphenylphosphonio)prop-1-en-3-id-2-yl]biphenyl-2′-carboxylate 2. X-ray crystal structures of both 1 and 2 are reported.

Co-reporter:R. Alan Aitken, Graham Dawson, Neil S. Keddie, Helmut Kraus, Alexandra M. Z. Slawin, Joanne Wheatley and J. Derek Woollins  
Chemical Communications 2009 (Issue 47) pp:7381-7383
Publication Date(Web):05 Nov 2009
DOI:10.1039/B913107H
While thermolysis of thiocarbonyl-stabilised phosphonium ylides generally results in extrusion of Ph3PS to give alkynes, those with a PCH function instead undergo a novel P to S transfer of a phenyl group to give (Z)-configured 1-phosphino-2-sulfenylalkenes of interest as bidentate ligands.
Co-reporter:R. Alan Aitken and Alasdair N. Garnett  
New Journal of Chemistry 2009 vol. 33(Issue 12) pp:2402-2404
Publication Date(Web):22 Oct 2009
DOI:10.1039/B9NJ00528E
Flash vacuum pyrolysis of appropriate stabilised ylides, prepared in a few steps from 2-(methylthio)nicotinic acid, give products containing previously unknown naphtho-, phenanthro-, benzothieno- and benzofuro-fused thieno[2,3-b]pyridine ring systems.
Co-reporter:R. Alan Aitken;Stephen J. Costello;Alexra M. Z. Slawin and;Neil J. Wilson
European Journal of Organic Chemistry 2003 Volume 2003(Issue 4) pp:
Publication Date(Web):23 JAN 2003
DOI:10.1002/ejoc.200390101

Tributylphosphane reacts with DMAD to give the crystalline adduct 2 which is stabilised by extensive delocalisation and whose formation involves an unusual rearrangement. The isomeric structure 7 for the previously reported adduct with triphenylphosphane is supported by 13C NMR spectroscopy. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2003)

Co-reporter:R. Alan Aitken;Nouria A. Al-Awadi;Mark E. Balkovich;Hans Jürgen Bestmann;Oliver Clem;Scott Gibson;Andreas Groß;Ajith Kumar;Thomas Röder
European Journal of Organic Chemistry 2003 Volume 2003(Issue 5) pp:
Publication Date(Web):10 FEB 2003
DOI:10.1002/ejoc.200390127

Both ketone- and ester-stabilised phosphorus ylides undergo Michael addition to vinyl ketones to give the β,δ′-dioxo ylides 3 and 5, respectively, although in the latter case careful temperature control is required to avoid an undesired side-reaction. Under conditions of flash vacuum pyrolysis at 650 °C the ylides 3 generally undergo Ph3PO extrusion to afford the γ,δ-alkynyl ketones 14, although these are found to partly undergo a secondary fragmentation. In contrast, the ylides 5 react under the same conditions to give the synthetically useful 1,3-dienes 20 by way of cyclobutenes. Rate constants for the reaction of selected ylides 3 and 5 are reported. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2003)

Co-reporter:R. Alan Aitken, Philip K. G. Hodgson, John J. Morrison and Adebayo O. Oyewale  
Organic & Biomolecular Chemistry 2002 (Issue 3) pp:402-415
Publication Date(Web):09 Jan 2002
DOI:10.1039/B108663D
Flash vacuum pyrolysis over a bed of freshly sublimed magnesium on glass wool results in efficient coupling of benzyl halides to give the corresponding bibenzyls. Where an ortho halogen substituent is present further dehalogenation gives some dihydroanthracene and anthracene. Efficient coupling is also observed for halomethylnaphthalenes and halodiphenylmethanes while chlorotriphenylmethane gives 4,4′-bis(diphenylmethyl)biphenyl. By using α,α′-dihalo-o-xylenes, benzocyclobutenes are obtained in good yield, while the isomeric α,α′-dihalo-p-xylenes give a range of high thermal stability polymers by polymerisation of the initially formed p-xylylenes. Other haloalkylbenzenes undergo largely dehydrohalogenation where this is possible, in some cases resulting in cyclisation. Deoxygenation is also observed with haloalkyl phenyl ketones to give phenylalkynes as well as other products. With simple alkyl halides there is efficient elimination of HCl or HBr to give alkenes. For aliphatic dihalides this also occurs to give dienes but there is also cyclisation to give cycloalkanes and dehalogenation with hydrogen atom transfer to give alkenes in some cases. For 5-bromopent-1-ene the products are those expected from a radical pathway but for 6-bromohex-1-ene they are clearly not. For 2,2-dichloropropane and 1,1-dichloropropane elimination of HCl occurs but for 1,1-dichlorobutane, -pentane and -hexane partial hydrolysis followed by elimination of HCl gives E,E-, E,Z- and Z,Z- isomers of the dialk-1-enyl ethers and fully assigned 13C NMR data are presented for these. With 6-chlorohex-1-yne and 7-chlorohept-1-yne there is cyclisation to give methylenecycloalkanes and -cycloalkynes. The behaviour of 1,2-dibromocyclohexane and 1,2-dichlorocyclooctane under these conditions is also examined. Various pieces of evidence are presented that suggest that these processes do not involve generation of free gas-phase radicals but rather surface-adsorbed organometallic species.
Co-reporter:R. Alan Aitken;Philip Lightfoot;Neil J. Wilson
European Journal of Organic Chemistry 2001 Volume 2001(Issue 1) pp:
Publication Date(Web):11 DEC 2000
DOI:10.1002/1099-0690(200101)2001:1<35::AID-EJOC35>3.0.CO;2-X

Tributylphosphane, DMAD and carbonyl sulfide react in a 2:2:1 ratio to give Bu3PS and the crystalline adduct 2 which is stabilised by extensive delocalisation; the sulfur analogue 5 has also been obtained.

Co-reporter:R. Alan Aitken and Alasdair N. Garnett  
Organic & Biomolecular Chemistry 2000 (Issue 18) pp:3020-3021
Publication Date(Web):18 Aug 2000
DOI:10.1039/B006513G
3-Methoxythiophene-2-methanol 2 undergoes condensation with elimination of water and formaldehyde under acidic conditions to give bis(3-methoxy-2-thienyl)methane 3 and a further product resulting from reaction of 3 with the thienylmethyl carbocation; the other electron-rich thiophenemethanols 8 and 10 react similarly.
Co-reporter:R. Alan Aitken, Graham Dawson, Neil S. Keddie, Helmut Kraus, Alexandra M. Z. Slawin, Joanne Wheatley and J. Derek Woollins
Chemical Communications 2009(Issue 47) pp:NaN7383-7383
Publication Date(Web):2009/11/05
DOI:10.1039/B913107H
While thermolysis of thiocarbonyl-stabilised phosphonium ylides generally results in extrusion of Ph3PS to give alkynes, those with a PCH function instead undergo a novel P to S transfer of a phenyl group to give (Z)-configured 1-phosphino-2-sulfenylalkenes of interest as bidentate ligands.
Co-reporter:R. Alan Aitken, Kati M. Aitken, Philip G. Carruthers, Marc-Alexandre Jean and Alexandra M. Z. Slawin
Chemical Communications 2013 - vol. 49(Issue 97) pp:NaN11369-11369
Publication Date(Web):2013/10/23
DOI:10.1039/C3CC47801G
The fundamental heterocyclic compound 1,4-oxazine has been generated using FVP. It is the first parent heterocycle among all the possible isomeric oxazines, thiazines and their heavier atom analogues to be characterised spectroscopically, and is shown to exist in solution entirely as the 4H-isomer. X-ray structure determination of the N-Boc precursor shows significant deviations from theoretically predicted geometric parameters.
Co-reporter:R. Alan Aitken, Nazira Karodia, Hollie B. McCarron, Cécile Rouxel, Nina Sahabo and Alexandra M. Z. Slawin
Organic & Biomolecular Chemistry 2016 - vol. 14(Issue 5) pp:NaN1804-1804
Publication Date(Web):2016/01/05
DOI:10.1039/C5OB02467F
A range of twelve stabilised phosphonium ylides containing tetrahydrofuran, tetrahydropyran or 2,2-dimethyl-1,3-dioxolane rings have been prepared and fully characterised, including one X-ray structure determination of each type. The X-ray structures confirm the PC and CO functions to be syn and all the compounds undergo thermal extrusion of Ph3PO to give the corresponding alkynes. In some cases there is also competing loss of Ph3P to give different carbene-derived products and evidence has been obtained for the generation of 2-phenyloxete in this way. Raising the pyrolysis temperature leads in several cases to new secondary reactions of the alkyne products involving a sequence of alkyne to vinylidene isomerisation, intramolecular CH insertion, and retro Diels Alder reaction.
2,3-Benzodithiin, 1,4-dihydro-5,8-dimethoxy-, 2-oxide
2,3-Benzodithiin, 1,4-dihydro-5,8-dimethoxy-
1,4-Methanonaphthalene-5,8-dione, 6,7-bis(bromomethyl)-1,4,4a,8a-tetrahydro-
2,5-Cyclohexadiene-1,4-dione, 2,3-bis(bromomethyl)-
Benzene, 1-bromo-4-(bromomethyl)-2,5-dimethoxy-3-methyl-
4-Ethynyltetrahydro-2H-pyran
1,1'-(2,4-thiazolediyl)bis-Ethanone
PHOSPHINE OXIDE, (2-CHLOROPHENYL)METHYLPHENYL-
1,3-Dioxolane, 2,2'-(1,2-phenylene)bis-
Benzene, 1-bromo-3,4-bis(bromomethyl)-2,5-dimethoxy-