(R)-Lansoprazole, (S)-pantoprazole, and (R)-rabeprazole are commonly used drugs for peptic ulcers. The self-disproportionation of the enantiomers of these prazoles in regular column chromatography is described herein. When non-racemic mixtures of the prazoles were eluted under achiral, gravity-driven silica gel column chromatography conditions, enantiomeric enrichment occurred in the first fractions, while enantiomeric depletion occurred in the last fractions. The pure enantiomers of all prazoles can be prepared from non-racemic starting materials using a simple procedure (achiral chromatography). Thus, a new method for obtaining a sample with very high enantiomeric purity was established. These results suggested that caution is required to avoid enantiomer fractionation during the purification of the asymmetric synthesis products by chromatography.