Co-reporter:Dipl.-Chem. K. Philip Wojtas;Dr. Matthias Riedrich;Dr. Jin-Yong Lu;Dr. Philipp Winter;M.Sc. Thomas Winkler;M.Sc. Sophia Walter ;Dr. Hans-Dieter Arndt
Angewandte Chemie 2016 Volume 128( Issue 33) pp:9924-9928
Publication Date(Web):
DOI:10.1002/ange.201603140
Abstract
Eine Totalsynthese des bismakrocyclischen Thiopeptidantibiotikums Nosiheptid gelang durch den Aufbau einer voll funktionalisierten linearen Vorstufe und konsekutive Makrocyclisierungen. Schlüsselmerkmale waren eine kritische Makrothiolactonisierung und eine milde Entschützungsstrategie für den 3-Hydroxypyridin-Kern. Der Naturstoff war mit isoliertem authentischem Material im Hinblick auf spektroskopische Daten und antimikrobielle Aktivität identisch.
Co-reporter:Dipl.-Chem. K. Philip Wojtas;Dr. Matthias Riedrich;Dr. Jin-Yong Lu;Dr. Philipp Winter;M.Sc. Thomas Winkler;M.Sc. Sophia Walter ;Dr. Hans-Dieter Arndt
Angewandte Chemie International Edition 2016 Volume 55( Issue 33) pp:9772-9776
Publication Date(Web):
DOI:10.1002/anie.201603140
Abstract
Total synthesis of the bismacrocyclic thiopeptide antibiotic nosiheptide was achieved through the assembly of a fully functionalized linear precursor followed by consecutive macrocyclizations. Key features are a critical macrothiolactonization and a mild deprotection strategy for the 3-hydroxypyridine core. The natural product was identical to isolated authentic material in terms of spectral data and antibiotic activity.
Co-reporter:Robert R. A. Freund and Hans-Dieter Arndt
The Journal of Organic Chemistry 2016 Volume 81(Issue 22) pp:11009-11016
Publication Date(Web):October 11, 2016
DOI:10.1021/acs.joc.6b01985
A short total synthesis of the novel unnatural parthenolide diastereomer (±)-4,5-dia-parthenolide was accomplished in 13 steps and an overall yield of 1.75% starting from commercially available (E,E)-farnesol. The challenging isopropenyl side chain oxidation was regioselectively achieved via a newly developed stepwise dihydroxylation procedure, employing a Bartlett–Smith iodocarbonate cyclization followed by iodide substitution and catalytic transesterification.
Co-reporter:Dr. Hans-Dieter Arndt;Dr. Stefano Rizzo;M.Sc. Christina Nöcker;Dr. Vijay N. Wakchaure;Dr. Lech-Gustav Milroy;B.Sc. Vanessa Bieker;Dr. Abram Calderon;Dr. Tuyen T. N. Tran;Dr. Silke Br;Dr. Leif Dehmelt;Dr. Herbert Waldmann
Chemistry - A European Journal 2015 Volume 21( Issue 14) pp:5311-5316
Publication Date(Web):
DOI:10.1002/chem.201500368
Abstract
Macrocyclic natural products (NPs) and analogues thereof often show high affinity, selectivity, and metabolic stability, and methods for the synthesis of NP-like macrocycle collections are of major current interest. We report an efficient solid-phase/cyclorelease method for the synthesis of a collection of macrocyclic depsipeptides with bipartite peptide/polyketide structure inspired by the very potent F-actin stabilizing depsipeptides of the jasplakinolide/geodiamolide class. The method includes the assembly of an acyclic precursor chain on a polymeric carrier, terminated by olefins that constitute complementary fragments of the polyketide section and cyclization by means of a relay-ring-closing metathesis (RRCM). The method was validated in the first total synthesis of the actin-stabilizing cyclodepsipeptide seragamide A and the synthesis of a collection of structurally diverse bipartite depsipeptides.
Co-reporter:Dr. Kirtikumar B. Jadhav ;Dr. Roman J. Lichtenecker ;Anke Bullach;Dr. Bhubaneswar Mal;Dr. Hans-Dieter Arndt
Chemistry - A European Journal 2015 Volume 21( Issue 15) pp:
Publication Date(Web):
DOI:10.1002/chem.201405413
Abstract
D-/L-Peptides such as gramicidin A (gA) adopt unique dimeric β-helical structures of different topologies. To overcome their conformational promiscuity and enrich individual components, a dynamic combinatorial approach assisted by thiol tags was developed. This method led to identification of the preferential formation of antiparallel dimers under a broad range of conditions, which was independent of peptide side-chain polarity. Exclusive formation of an antiparallel cyclic dimer was achieved in the presence of cesium ions.
Co-reporter:Patrick Loos;Cyril Ronco;Matthias Riedrich
European Journal of Organic Chemistry 2013 Volume 2013( Issue 16) pp:3290-3315
Publication Date(Web):
DOI:10.1002/ejoc.201300160
Abstract
Intramolecular aza-Wittig ring closures were applied to synthesize thiazolines, oxazolines, and imidazolines from β-azido thioester, ester, and amide precursors. The cyclization precursors were obtained from amino acid derivatives. Optimized conditions for diazo transfer with a fast rate and racemization suppression, (thio)esterification, and amide coupling reactions are described. The ring closure reaction can be executed with PPh3 under neutral conditions and was found to be highly chemoselective for five-membered rings. If amide groups were activated with tosyl groups, smooth intramolecular ring closure of iminophosphoranes furnished enantiopure imidazoline products with position-specific tosyl protection. This aza-Wittig-based azoline synthesis was then extended to double azoline ring closures to furnish catenated azoline building blocks common to peptide natural product building blocks and their analogues.
Co-reporter:Dr. Roman J. Lichtenecker;Dr. Bernhard Ellinger;Dr. Hong-Mei Han;Kirtikumar B. Jadhav;Dr. Sascha Baumann;Dr. Oliwia Makarewicz;Dr. Markus Grabenbauer; Dr. Hans-Dieter Arndt
ChemBioChem 2013 Volume 14( Issue 18) pp:
Publication Date(Web):
DOI:10.1002/cbic.201300243
Abstract
Growing resistance to antibiotics, as well as newly emerging pathogens, stimulate the investigation of antimicrobial peptides (AMPs) as therapeutic agents. Here, we report a new library design concept based on a stochastic distribution of natural AMP amino acid sequences onto half-length synthetic peptides. For these compounds, a non-natural motif of alternating D- and L-backbone stereochemistry of the peptide chain predisposed for β-helix formation was explored. Synthetic D-/L-peptides with permuted half-length sequences were delineated from a full-length starter sequence and covalently recombined to create two-dimensional compound arrays for antibacterial screening. Using the natural AMP magainin as a seed sequence, we identified and iteratively optimized hit compounds showing high antimicrobial activity against Gram-positive and Gram-negative bacteria with low hemolytic activity. Cryo-electron microscopy characterized the membrane-associated mechanism of action of the new D-/L-peptide antibiotics.
Co-reporter:Lech-Gustav Milroy ; Stefano Rizzo ; Abram Calderon ; Bernhard Ellinger ; Silke Erdmann ; Justine Mondry ; Peter Verveer ; Philippe Bastiaens ; Herbert Waldmann ; Leif Dehmelt
Journal of the American Chemical Society 2012 Volume 134(Issue 20) pp:8480-8486
Publication Date(Web):April 4, 2012
DOI:10.1021/ja211708z
We have characterized rationally designed and optimized analogues of the actin-stabilizing natural products jasplakinolide and chondramide C. Efficient actin staining was achieved in fixed permeabilized and non-permeabilized cells using different combinations of dye and linker length, thus highlighting the degree of molecular flexibility of the natural product scaffold. Investigations into synthetically accessible, non-toxic analogues have led to the characterization of a powerful cell-permeable probe to selectively image static, long-lived actin filaments against dynamic F-actin and monomeric G-actin populations in live cells, with negligible disruption of rapid actin dynamics.
Co-reporter:Kirtikumar B. Jadhav, Claudia Stein, Oliwia Makarewicz, Gabriele Pradel, Roman J. Lichtenecker, Holger Sack, Stefan H. Heinemann, Hans-Dieter Arndt
Bioorganic & Medicinal Chemistry (1 January 2017) Volume 25(Issue 1) pp:
Publication Date(Web):1 January 2017
DOI:10.1016/j.bmc.2016.10.033
The d-/l-peptide gramicidin A (gA) is well known as a pivotal ion channel model and shows a broad spectrum of bioactivities such as antibiosis, antimalarial activity, as well as hemolysis. We applied inter-chain disulfide bonds to constrain the conformational freedom of gA into parallel and antiparallel dimeric topologies. Albeit the constructs were not found to be monoconformational, CD- and IR-spectroscopic studies suggested that this strategy indeed restricted the conformational space of the d-/l-peptide construct, and that β-helical secondary structures prevail. Correlative testing of gA dimers in antimicrobial, antimalarial, and ion conduction assays suggested that the tail-to-tail antiparallel single stranded β6.3 helix dominantly mediates the bioactivity of gA. Other conformers are unlikely to contribute to these activities. From these investigations, only weakly ion conducting gA dimers were identified that retained nM antimalarial activity.