The dynamics and uncertainties in wetland methane budgets affected by the introduction of Alnus trabeculosa H. necessitate research on production of methane by methanogenic archaea and consumption by methane-oxidizing microorganisms simultaneously.This study investigated methane emission in situ by the closed chamber method, and methanogenic and methanotrophic communities using denatured gradient gel electrophoresis (DGGE) and quantitative PCR based on mcrA (methyl coenzyme M reductase), pmoA (particulate methane monooxygenase) genes in the rhizosphere and non-rhizosphere soils in the indigenous pure Phragmites australis T., and A. trabeculosa–P. australis mixed communities in Chongxi wetland.Methane flux rate from the pure P. australis community was 2.4 times larger than that of A. trabeculosa–P. australis mixed community in the rhizosphere and 1.7 times larger in the non-rhizosphere, respectively. The abundance of methanogens was lower in the mixed community soils (3.56 × 103–6.90 × 103 copies g−1 dry soil) compared with the P. australis community (1.47 × 104–1.89 × 104 copies g−1 dry soil), whereas the methanotrophs showed an opposite trend (2.08 × 106–1.39 × 106 copies g−1 dry soil for P. australis and 6.20 × 106–1.99 × 106 copies g−1 dry soil for mixed community soil). A liner relationship between methane emission rates against pmoA/mcrA ratios (R2 = 0.5818, p < 0.05, n = 15) was observed. The community structures of the methane-cycling microorganism based on mcrA and pmoA suggested that acetoclastic methanogens belonging to Methanosarcinaceae and a particular type II methanotroph, Methylocystis, were dominant in these two plant communities.The introduction of A. trabeculosa would promote the proliferation of methanotrophs, especially the dominant Methylocystis, but not methanogens, ultimately diminishing methane emission in the wetland.

Beneficial interactions between microorganisms and plants, particularly in the rhizosphere, are a research area of global interest. Four cadmium (Cd)-tolerant bacterial strains were isolated from heavy metal-contaminated sludge and their effects on Cd mobility in soil and the root elongation and Cd accumulation of Orychophragmus violaceus were explored to identify the capability of metal-resistant rhizobacteria for promoting the growth of O. violaceus roots on Cd-contaminated soils. The isolated strains, namely, Bacillus subtilis, B. cereus, B. megaterium, and Pseudomonas aeruginosa, significantly enhanced the plant Cd accumulation. The Cd concentrations in the roots and shoots were increased by up to 2.29- and 2.86-fold, respectively, by inoculation of B. megaterium, as compared with the uninoculated control. The bacterial strains displayed different effects on the shoot biomass. Compared with the uninoculated plants, the shoot biomass of the inoculated plants was slightly increased by B. megaterium and significantly decreased by the other strains. B. megaterium was identified as the best candidate for enhancing Cd accumulation in O. violaceus. Thus, this study provides novel insight into the development of plant-microbe systems for phytoremediation.

Several Zn-tolerant bacterial strains were isolated from heavy-metal contaminated sludge, and their effects on root elongation, mobility, and accumulation of Zn in Orychophragmus violaceus were studied. The isolated strains included Bacillus subtilis, B. cereus, Flavobacterium sp. and Pseudomonas aeruginosa which were capable of stimulating root elongation in O. violaceus seedlings either in the presence or absence of Zn. The four bacterial strains significantly increased the concentration of water-extractable Zn compared with axenic soil. In addition, the four Zn-tolerant bacteria significantly increased the shoot biomass and Zn accumulation in O. violaceus compared to non-inoculated plants. The bacterial strains displayed different capacities to enhance plant Zn accumulation. Flavobacterium sp. was identified as the best candidate for enhancing Zn accumulation in plants, increasing Zn accumulation up to 1.21- and 1.19-fold in shoots and roots, respectively, compared to non-inoculated plants. It was indicated that Zn-tolerant bacteria played an important role in influencing the availability of water-soluble Zn in soil and Zn accumulation by plants. This study provides insight into the development of plant–microbe systems for phytoremediation.

Alnus trabeculosa, a rhizobia-nodulating tree, was introduced into the Chongxi tidal wetland in the Yangtze River estuary of China to increase the biodiversity of plants and restore tidal wetland functions. However, the effect of the introduced plant on soil bacterial communities and restoration outcomes remains unknown. In this study, the rhizosphere bacterial community structure and diversity were compared between Phragmites australis monospecific community and A. trabeculosa-P. australis mixed communities, aiming to assess whether A. trabeculosa influenced the rhizosphere bacterial communities of P. australis and to investigate whether different taxonomic groups within a soil community may respond similarly to the presence of an introduced exotic plant. Among the 14 phylogenetic phyla detected, Proteobacteria and Acidobacteria were the dominant bacterial taxa in the rhizosphere. Phylogenetic analysis of the predominant Proteobacteria showed that the clones from the rhizosphere soils of A. trabeculosa and P. australis in A. trabeculosa-P. australis mixed communities were more diverse than those in the rhizosphere soil of P. australis in P. australis monospecific community. The rhizosphere community in the wetland potentially included active microbial community related to carbon, nitrogen, and sulfur cycling in the Yangtze River estuary. The rhizosphere soil of P. australis in A. trabeculosa-P. australis mixed communities exhibited the highest Shannon diversity index (H') and Simpson diversity index (1/D) (H = 4.52, 1/D = 253). Correspondence analyses revealed that the bacterial community structures were altered after A. trabeculosa was introduced.