Paul A. Beales

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Organization: University of Leeds , England
Department: School of Chemistry
Title: Research Fellow(PhD)
Co-reporter:D. E. Miles, E. A. Mitchell, N. Kapur, P. A. Beales and R. K. Wilcox  
Journal of Materials Chemistry A 2016 vol. 4(Issue 19) pp:3225-3231
Publication Date(Web):29 Mar 2016
DOI:10.1039/C6TB00121A
Degeneration of the spinal discs is a major cause of back pain. During the degeneration process, there is a loss of glycosaminoglycans (GAGs) from the proteoglycan-rich gel in the disc's nucleus, which adversely alters biomechanical performance. Current surgical treatments for back pain are highly invasive and have low success rates; there is an urgent need for minimally-invasive approaches that restore the physiological mechanics of the spine. Here we present an injectable peptide:GAG hydrogel that rapidly self-assembles in situ and restores the mechanics of denucleated intervertebral discs. It forms a gel with comparable mechanical properties to the native tissue within seconds to minutes depending on the peptide chosen. Unlike other biomaterials that have been proposed for this purpose, these hybrid hydrogels can be injected through a very narrow 25 G gauge needle, minimising damage to the surrounding soft tissue, and they mimic the ability of the natural tissue to draw in water by incorporating GAGs. Furthermore, the GAGs enhance the gelation kinetics and thermodynamic stability of peptide hydrogels, significantly reducing effusion of injected material from the intervertebral disc (GAG leakage of 8 ± 3% after 24 h when peptide present, compared to 39 ± 3% when no peptide present). In an ex vivo model, we demonstrate that the hydrogels can restore the compressive stiffness of denucleated bovine intervertebral discs. Compellingly, this novel biomaterial has the potential to transform the clinical treatment of back pain by resolving current surgical challenges, thus improving patient quality of life.
Co-reporter:A. Ivona Petrache, Darren C. Machin, Daniel J. Williamson, Michael E. Webb and Paul A. Beales  
Molecular BioSystems 2016 vol. 12(Issue 6) pp:1760-1763
Publication Date(Web):06 Apr 2016
DOI:10.1039/C6MB00126B
Lipid nanodiscs have broad applications in membrane protein assays, biotechnology and materials science. Chemical modification of the nanodiscs to expand their functional attributes is generally desirable for all of these uses. We present a method for site-selective labelling of the N-terminus of the nanodisc's membrane scaffold protein (MSP) using the Sortase A protein. Labelling of the MSP was achieved when assembled within the lipid nanodisc architecture, demonstrating that this method can be used as a retrofit approach to modification of preformed nanodiscs before or during application. We label the MSP with a fluorescent fluorescein moiety and use them to image nanodisc uptake into HeLa cells. The Sortase A labelling method could be employed as a general approach to labelling nanodiscs with application-specific functionalities.
Co-reporter:Paul A. Beales, Barbara Ciani and Alexa J. Cleasby  
Physical Chemistry Chemical Physics 2015 vol. 17(Issue 24) pp:15489-15507
Publication Date(Web):16 Mar 2015
DOI:10.1039/C5CP00480B
Compartmentalisation of cellular processes is fundamental to regulation of metabolism in Eukaryotic organisms and is primarily provided by membrane-bound organelles. These organelles are dynamic structures whose membrane barriers are continually shaped, remodelled and scaffolded by a rich variety of highly sophisticated protein complexes. Towards the goal of bottom-up assembly of compartmentalised protocells in synthetic biology, we believe it will be important to harness and reconstitute the membrane shaping and sculpting characteristics of natural cells. We review different in vitro membrane models and how biophysical investigations of minimal systems combined with appropriate theoretical modelling have been used to gain new insights into the intricate mechanisms of these membrane nanomachines, paying particular attention to proteins involved in membrane fusion, fission and cytoskeletal scaffolding processes. We argue that minimal machineries need to be developed and optimised for employment in artificial protocell systems rather than the complex environs of a living organism. Thus, well-characterised minimal components might be predictably combined into functional, compartmentalised protocellular materials that can be engineered for wide-ranging applications.
Co-reporter:Paul A. Beales, T. Kyle Vanderlick
Advances in Colloid and Interface Science 2014 Volume 207() pp:290-305
Publication Date(Web):May 2014
DOI:10.1016/j.cis.2013.12.009

Highlights

DNA with hydrophobic modifications can functionalise liposome membranes.

Membrane-anchored DNA can act as adhesion receptors between liposome compartments.

Tuning lipid composition modulates properties of DNA-mediated liposome assemblies.

DNA nanotechnology allows transport of chemical information between compartments.

This biomimetic toolbox will enable applications in medicine and synthetic biology.

Co-reporter:Paul A. Beales ; Nienke Geerts ; Krishna K. Inampudi ; Hideki Shigematsu ; Corey J. Wilson ;T. Kyle Vanderlick
Journal of the American Chemical Society 2013 Volume 135(Issue 9) pp:3335-3338
Publication Date(Web):February 13, 2013
DOI:10.1021/ja311561d
We demonstrate the self-organization of quasi-one-dimensional nanostructures with periodic features using nature’s primary three building blocks: lipids, DNA, and proteins. The periodicity of these “BioNanoStacks” is controllable through selection of the length of the DNA spacers. We show that BioNanoStacks can be reversibly assembled and disassembled through thermal melting of the DNA duplex, where the melting transition temperature is controllable not just by the DNA sequence and salt concentration, but also by the lipid composition within these superstructures. These novel materials may find applications in fields such as templated nanomaterial assembly, tissue-engineering scaffolds, or therapeutic delivery systems. Well-established techniques for chemical modification of biomolecules will also provide a broad platform for adaption and remodeling of these structures to provide optimal features for the required application.
Co-reporter:Adam H. Churchman, Rachel Wallace, Steven J. Milne, Andy P. Brown, Rik Brydson and Paul A. Beales  
Chemical Communications 2013 vol. 49(Issue 39) pp:4172-4174
Publication Date(Web):08 Jan 2013
DOI:10.1039/C3CC37871C
We investigate the effect of serum albumin on the interaction of ZnO nanoparticles with DOPC lipid membranes and show that the size-stabilizing effect of the protein corona enhances their interaction with lipid membranes, which manifests, in part, as an increased ordering in the lipid packing.
Co-reporter:Jin Nam, T. Kyle Vanderlick and Paul A. Beales  
Soft Matter 2012 vol. 8(Issue 30) pp:7982-7988
Publication Date(Web):02 Jul 2012
DOI:10.1039/C2SM25646K
The design of novel, soft membrane structures with chemical and physical properties that are tunable across a broad spectrum of parameter space is important for the development of new functional materials. Many potential applications of these novel membranes will likely require biocompatible interfaces, e.g., for functional reconstitution of integral proteins. Here we investigate the formation and control of compositional heterogeneities in hybrid lipo-polymersomes (HLPs) created by mixing the diblock copolymer poly(butadiene-b-ethylene oxide) with common natural lipids, e.g., 1,2-dipalmitoyl-sn-glycero-3-phosphocholine or 1,2-palmitoyl-oleoyl-sn-glycero-3-phosphocholine. Mixing and de-mixing of lipid-rich domains from the polymer-rich matrix of hybrid vesicles is controlled via thermally driven phase separation and by the inclusion of cholesterol. Domain size and morphology can be controlled by cooling rate and lipid composition, respectively. Macromolecular additives, e.g., cyclodextrins, enzymes and surfactants, can be used to remodel the hybrid membrane and its domains, resulting in domain dissolution, controlled release of contents or rupture of the hybrid vesicles. These composite membranes are promising materials for encapsulation-based technologies that require the combination of biocompatible membrane environments and enhanced structural stability, e.g., delivery and sensing applications or controlling (bio)chemical reactions within confinement.
Co-reporter:Shengwen Zhang, Andrew Nelson, and Paul A. Beales
Langmuir 2012 Volume 28(Issue 35) pp:12831-12837
Publication Date(Web):June 20, 2012
DOI:10.1021/la301771b
Understanding the interactions between nanoparticles (NPs) and biological matter is a high-priority research area because of the importance of elucidating the physical mechanisms underlying the interactions leading to NP potential toxicity as well as NP viability as therapeutic vectors in nanomedicine. Here, we use two model membrane systems, giant unilamellar vesicles (GUVs) and supported monolayers, to demonstrate the competition between adhesion and elastic energy at the nanobio interface, leading to different mechanisms of NP–membrane interaction relating to NP size. Small NPs (18 nm) cause a “freeze effect” of otherwise fluid phospholipids, significantly decreasing the phospholipid lateral mobility. The release of tension through stress-induced fracture mechanics results in a single microsize hole in the GUVs after interaction. Large particles (>78 nm) promote membrane wrapping, which leads to increased lipid lateral mobility and the eventual collapse of the vesicles. Electrochemical impedance spectroscopy on the supported monolayer model confirms that differently sized NPs interact differently with the phospholipids in close proximity to the electrode during the lipid desorption process. The time scale of these processes is in accordance with the proposed NP/GUV interaction mechanism.
Co-reporter:Natália Bueno Leite, Anders Aufderhorst-Roberts, Mario Sergio Palma, Simon D. Connell, João Ruggiero Neto, Paul A. Beales
Biophysical Journal (1 September 2015) Volume 109(Issue 5) pp:
Publication Date(Web):1 September 2015
DOI:10.1016/j.bpj.2015.07.033
Polybia-MP1 (MP1) is a bioactive host-defense peptide with known anticancer properties. Its activity is attributed to excess serine (phosphatidylserine (PS)) on the outer leaflet of cancer cells. Recently, higher quantities of phosphatidylethanolamine (PE) were also found at these cells’ surface. We investigate the interaction of MP1 with model membranes in the presence and absence of POPS (PS) and DOPE (PE) to understand the role of lipid composition in MP1’s anticancer characteristics. Indeed we find that PS lipids significantly enhance the bound concentration of peptide on the membrane by a factor of 7–8. However, through a combination of membrane permeability assays and imaging techniques we find that PE significantly increases the susceptibility of the membrane to disruption by these peptides and causes an order-of-magnitude increase in membrane permeability by facilitating the formation of larger transmembrane pores. Significantly, atomic-force microscopy imaging reveals differences in the pore formation mechanism with and without the presence of PE. Therefore, PS and PE lipids synergistically combine to enhance membrane poration by MP1, implying that the combined enrichment of both these lipids in the outer leaflet of cancer cells is highly significant for MP1’s anticancer action. These mechanistic insights could aid development of novel chemotherapeutics that target pathological changes in the lipid composition of cancerous cells.
Co-reporter:Paul A. Beales, Barbara Ciani and Alexa J. Cleasby
Physical Chemistry Chemical Physics 2015 - vol. 17(Issue 24) pp:NaN15507-15507
Publication Date(Web):2015/03/16
DOI:10.1039/C5CP00480B
Compartmentalisation of cellular processes is fundamental to regulation of metabolism in Eukaryotic organisms and is primarily provided by membrane-bound organelles. These organelles are dynamic structures whose membrane barriers are continually shaped, remodelled and scaffolded by a rich variety of highly sophisticated protein complexes. Towards the goal of bottom-up assembly of compartmentalised protocells in synthetic biology, we believe it will be important to harness and reconstitute the membrane shaping and sculpting characteristics of natural cells. We review different in vitro membrane models and how biophysical investigations of minimal systems combined with appropriate theoretical modelling have been used to gain new insights into the intricate mechanisms of these membrane nanomachines, paying particular attention to proteins involved in membrane fusion, fission and cytoskeletal scaffolding processes. We argue that minimal machineries need to be developed and optimised for employment in artificial protocell systems rather than the complex environs of a living organism. Thus, well-characterised minimal components might be predictably combined into functional, compartmentalised protocellular materials that can be engineered for wide-ranging applications.
Co-reporter:Sanobar Khan, Mengqiu Li, Stephen P. Muench, Lars J. C. Jeuken and Paul A. Beales
Chemical Communications 2016 - vol. 52(Issue 73) pp:NaN11023-11023
Publication Date(Web):2016/08/16
DOI:10.1039/C6CC04207D
The full capabilities of membrane proteins in bionanotechnology can only be realised through improvements in their reconstitution environments that combine biocompatibility to support function and durability for long term stability. We demonstrate that hybrid vesicles composed of natural phospholipids and synthetic diblock copolymers have the potential to achieve these criteria.
Co-reporter:D. E. Miles, E. A. Mitchell, N. Kapur, P. A. Beales and R. K. Wilcox
Journal of Materials Chemistry A 2016 - vol. 4(Issue 19) pp:NaN3231-3231
Publication Date(Web):2016/03/29
DOI:10.1039/C6TB00121A
Degeneration of the spinal discs is a major cause of back pain. During the degeneration process, there is a loss of glycosaminoglycans (GAGs) from the proteoglycan-rich gel in the disc's nucleus, which adversely alters biomechanical performance. Current surgical treatments for back pain are highly invasive and have low success rates; there is an urgent need for minimally-invasive approaches that restore the physiological mechanics of the spine. Here we present an injectable peptide:GAG hydrogel that rapidly self-assembles in situ and restores the mechanics of denucleated intervertebral discs. It forms a gel with comparable mechanical properties to the native tissue within seconds to minutes depending on the peptide chosen. Unlike other biomaterials that have been proposed for this purpose, these hybrid hydrogels can be injected through a very narrow 25 G gauge needle, minimising damage to the surrounding soft tissue, and they mimic the ability of the natural tissue to draw in water by incorporating GAGs. Furthermore, the GAGs enhance the gelation kinetics and thermodynamic stability of peptide hydrogels, significantly reducing effusion of injected material from the intervertebral disc (GAG leakage of 8 ± 3% after 24 h when peptide present, compared to 39 ± 3% when no peptide present). In an ex vivo model, we demonstrate that the hydrogels can restore the compressive stiffness of denucleated bovine intervertebral discs. Compellingly, this novel biomaterial has the potential to transform the clinical treatment of back pain by resolving current surgical challenges, thus improving patient quality of life.
Co-reporter:Adam H. Churchman, Rachel Wallace, Steven J. Milne, Andy P. Brown, Rik Brydson and Paul A. Beales
Chemical Communications 2013 - vol. 49(Issue 39) pp:NaN4174-4174
Publication Date(Web):2013/01/08
DOI:10.1039/C3CC37871C
We investigate the effect of serum albumin on the interaction of ZnO nanoparticles with DOPC lipid membranes and show that the size-stabilizing effect of the protein corona enhances their interaction with lipid membranes, which manifests, in part, as an increased ordering in the lipid packing.
1-Propanol,2,3-bis(octadecyloxy)-
3,5,8-Trioxa-4-phosphahexacos-17-en-1-aminium,4-hydroxy-N,N,N-trimethyl-9-oxo-7-[[(1-oxohexadecyl)oxy]methyl]-, inner salt,4-oxide, (17Z)-
DIFENIDOL
3,5,8-Trioxa-4-phosphahexacos-17-en-1-aminium,4-hydroxy-N,N,N-trimethyl-9-oxo-7-[[(1-oxohexadecyl)oxy]methyl]-, inner salt,4-oxide, (7R,17Z)-
1-palmitoyl-2-oleoylglycero-3-phosphoserine
3,5,9-Trioxa-4-phosphaheptacos-18-en-1-aminium,4-hydroxy-N,N,N-trimethyl-10-oxo-7-[[(9Z)-1-oxo-9-octadecen-1-yl]oxy]-, innersalt, 4-oxide, (7R,18Z)-
Lecithin Dioleoyl