Mark A. Lipton

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Name: Lipton, Mark
Organization: Purdue University , USA
Department: Department of Chemistry
Title: (PhD)

TOPICS

Co-reporter:Sarah E. St. John, Katherine C. Jensen, SooSung Kang, Yafang Chen, Barbara Calamini, Andrew D. Mesecar, Mark A. Lipton
Bioorganic & Medicinal Chemistry 2013 Volume 21(Issue 19) pp:6022-6037
Publication Date(Web):1 October 2013
DOI:10.1016/j.bmc.2013.07.037
Resveratrol (3,5,4′-trihydroxylstilbene) has been proposed to elicit a variety of positive health effects including protection against cancer and cardiovascular disease. The highest affinity target of resveratrol identified so far is the oxidoreductase enzyme quinone reductase 2 (QR2), which is believed to function in metabolic reduction and detoxification processes; however, evidence exists linking QR2 to the metabolic activation of quinones, which can lead to cell toxicity. Therefore, inhibition of QR2 by resveratrol may protect cells against reactive intermediates and eventually cancer. With the aim of identifying novel inhibitors of QR2, we designed, synthesized, and tested two generations of resveratrol analogue libraries for inhibition of QR2. In addition, X-ray crystal structures of six of the resveratrol analogues in the active site of QR2 were determined. Several novel inhibitors of QR2 were successfully identified as well as a compound that inhibits QR2 with a novel binding orientation.
Co-reporter:Charles Rubert Pérez;Daneli López-Pérez;Jean Chmielewski ;Mark Lipton
Chemical Biology & Drug Design 2012 Volume 79( Issue 3) pp:260-269
Publication Date(Web):
DOI:10.1111/j.1747-0285.2011.01285.x

Two molecular scaffolds were designed using the CAVEAT molecular design package to inhibit the oligomerization of protective antigen (PA63), a key protein component of anthrax toxin. The inhibitors were designed to prevent heptamerization of PA63 by mimicking key residues of PA63 needed for the intermolecular interactions that stabilize the heptamer. Using the scaffolds identified by CAVEAT, seven candidate inhibitors were synthesized and tested for their ability to inhibit anthrax toxin–induced cytotoxicity, with three of the agents demonstrating modest inhibition in murine J774A.1 macrophage cells.

Co-reporter:Soo Sung Kang, Muriel Cuendet, Denise C. Endringer, Vicki L. Croy, John M. Pezzuto, Mark A. Lipton
Bioorganic & Medicinal Chemistry 2009 Volume 17(Issue 3) pp:1044-1054
Publication Date(Web):1 February 2009
DOI:10.1016/j.bmc.2008.04.031
Resveratrol (4,3′,5′-trihydroxystilbene) is a naturally occurring antioxidant that inhibits cyclooxygenase-1 (COX-1), cyclooxygenase-2 (COX-2) and the transcription factor NF-κB. A 78-membered library of resveratrol analogues in which the substituents on the two aryl rings and alkene were varied was synthesized using a solid-phase Wittig olefination reaction. The library contains inhibitors against all three proteins that were more potent than resveratrol itself. Preliminary structure–activity relationships were also obtained from these data that permitted the derivation of pharmacophore models for each of the three targets.
Co-reporter:Gurusankar Ramamoorthy, Cristina M. Acevedo, Edgardo Alvira, Mark A. Lipton
Tetrahedron: Asymmetry 2008 Volume 19(Issue 22) pp:2546-2554
Publication Date(Web):17 November 2008
DOI:10.1016/j.tetasy.2008.09.031
All 4 diastereomeric possibilities for the 2,3-dihydroxy-2,6,8-trimethyldeca-(4Z,6E)-dienoic acid (Dhtda) residue, found in the cyclic depsipeptide natural products papuamides A–D and mirabamides A–D, were stereoselectively synthesized using a Z-selective Wittig reaction of both enantiomers of 2,4-dimethylhex-2-enyl-triphenylphosphonium bromide with all four diastereoisomers of ethyl-3-formyl-2-methyl-1,4-dioxaspiro[4,4]nonane-2-carboxylate. To elucidate the configuration of Dhtda, the 1H and 13C NMR spectra of the synthetic isomers were compared to those of the natural residue. On the basis of that comparison, it is suggested that the likely configuration of the diastereomer present in Dhtda residue is either (2R,3S,8S) or (2S,3R,8S) in the papuamides and mirabimides.Ethyl (2E,4S)-2,4-dimethyl-2-hexenoateC10H18O2Ee = 100%[α]D25=+20.0 (c 1.7, CHCl3)source of chirality: (S)-2-butan-1-olAbsolute configuration: (S)(2E,4S)-2,4-Dimethyl-2-hexen-1-olC8H16OEe = 100%[α]D25=+22.5 (c 1.3, CHCl3)source of chirality: (S)-2-butan-1-olAbsolute configuration: (S)(2E,4S)-2,4-Dimethyl-2-hexenyltriphenylphosphonium bromideC32H30BrPEe = 100%[α]D25=+12.4 (c 0.5, CHCl3)source of chirality: (S)-2-butan-1-olAbsolute configuration: (S)Diethyl (2R,3R)-1,4-dioxaspiro[4,4]nonane-2,3-dicarboxylateC13H20O6Ee = 100%[α]D25=-32.5 (c 3.4, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2R,3R)Diethyl (2R,3R)-2-methyl-1,4-dioxaspiro[4,4]nonane-2,3-dicarboxylateC14H22O6Ee = 100%[α]D25=-56.1 (c 1.75, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2R,3R)Diethyl (2R,3S)-2-methyl-1,4-dioxaspiro[4,4]nonane-2,3-dicarboxylateC14H22O6Ee = 100%[α]D25=-24.4 (c 0.7, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2R,3S)Ethyl (2R,3S)-3-[(1Z,3E,5S)-3,5-dimethylhepta-1,3-dienyl]-2-methyl-1,4-dioxaspiro[4.4]nonane-2-carboxylateC20H32O4Ee = 100%[α]D25=+15.9 (c 1.1, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2R,3S,5′S)Ethyl (2R,3R)-3-[(1Z,3E,5S)-3,5-dimethylhepta-1,3-dienyl]-2-methyl-1,4-dioxaspiro[4.4]nonane-2-carboxylateC20H32O4Ee = 100%[α]D25=+18.9 (c 1.0, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2R,3R,5′S)Ethyl (2S,3R)-3-[(1Z,3E,5S)-3,5-dimethylhepta-1,3-dienyl]-2-methyl-1,4-dioxaspiro[4.4]nonane-2-carboxylateC20H32O4Ee = 100%[α]D25=+28.0 (c 1.1, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2S,3R,5′S)Ethyl (2S,3S)-3-[(1Z,3E,5S)-3,5-dimethylhepta-1,3-dienyl]-2-methyl-1,4-dioxaspiro[4.4]nonane-2-carboxylateC20H32O4Ee = 100%[α]D25=+13.7 (c 1.1, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2S,3S,5′S)Ethyl (2R,3S,4Z,6E,8S)-2,3-dihydroxy-2,6,8-trimethyldeca-4,6-dienylcarboxylateC15H26O4Ee = 100%[α]D25=-80.1 (c 1.0, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2R,3S,8S)Ethyl (2R,3R,4Z,6E,8S)-2,3-dihydroxy-2,6,8-trimethyldeca-4,6-dienylcarboxylateC15H26O4Ee = 100%[α]D25=+44.7 (c 1.1, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2R,3R,8S)Ethyl (2S,3R,4Z,6E,8S)-2,3-dihydroxy-2,6,8-trimethyldeca-4,6-dienylcarboxylateC15H26O4Ee = 100%[α]D25=+110.4 (c 1.0, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2S,3R,8S)Ethyl (2S,3S,4Z,6E,8S)-2,3-dihydroxy-2,6,8-trimethyldeca-4,6-dienylcarboxylateC15H26O4Ee = 100%[α]D25=+3.4 (c 1.25, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2S,3S,8S)Methyl N-[(2R,3S,4Z,6E,8S)-2,3-dihydroxy-2,6,8-trimethyldeca-4,6-dienoyl]glycinateC16H27NO5Ee = 100%[α]D25=-16.8 (c 2.5, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2R,3S,8S)Methyl N-[(2R,3R,4Z,6E,8S)-2,3-dihydroxy-2,6,8-trimethyldeca-4,6-dienoyl]glycinateC16H27NO5Ee = 100%[α]D25=+38.5 (c 3.75, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2R,3R,8S)Methyl N-[(2S,3R,4Z,6E,8S)-2,3-dihydroxy-2,6,8-trimethyldeca-4,6-dienoyl]glycinateC16H27NO5Ee = 100%[α]D25=+55.0 (c 1.0, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2S,3R,8S)Methyl N-[(2S,3S,4Z,6E,8S)-2,3-dihydroxy-2,6,8-trimethyldeca-4,6-dienoyl]glycinateC16H27NO5Ee = 100%[α]D25=-3.2 (c 2.5, CHCl3)source of chirality: (+)-diethyl-l-tartrateAbsolute configuration: (2S,3S,8S)
Benzamide, 3,5-dihydroxy-N-(4-hydroxyphenyl)-
Benzeneacetonitrile, 4-[[(1,1-dimethylethyl)dimethylsilyl]oxy]-
Benzoic acid, 3,5-bis[[(1,1-dimethylethyl)dimethylsilyl]oxy]-
3,5-Diisopropoxy-benzoic acid
Benzenamine, 4-[[(1,1-dimethylethyl)dimethylsilyl]oxy]-
3,5-Diisopropoxybenzaldehyde
Benzoic acid, 4-[[(1,1-dimethylethyl)dimethylsilyl]oxy]-
Benzoyl chloride,3,5-dihydroxy-
N-Methylnaphthalen-2-amine
3,4-Dimethoxybenzoic acid