Sergii Afonin

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Organization: Karlsruhe Institute of Technology (KIT)
Department: Karlsruhe Institute of Technology (KIT)
Title:
Co-reporter:Anton N. Tkachenko;Pavel K. Mykhailiuk;Dmytro S. Radchenko;Oleg Babii;Anne S. Ulrich;Igor V. Komarov
European Journal of Organic Chemistry 2014 Volume 2014( Issue 17) pp:3584-3591
Publication Date(Web):
DOI:10.1002/ejoc.201301737

Abstract

A monofluoro-substituted amino acid was designed to serve as a conformationally restricted label for solid-state 19F NMR distance measurements in membrane-bound peptides. The aromatic cis and trans isomers of 1-amino-3-(4-fluorophenyl)cyclobutanecarboxylic acid were synthesized in five steps from diethyl 2-(4-fluorophenyl)propanedioate. They were incorporated into the antimicrobial peptide gramicidin S to replace a native DPhenylalanine residue. Because the Cα-tetrasubstituted amino acid cannot racemize, it showed full compatibility with solid-phase peptide synthesis protocols. According to circular dichroism analysis and molecular modeling, the 19F-labeled analogues of the known helix-inducing amino acid (1-aminocyclobutane-1-carboxylic acid) do not disrupt the peptide conformation when substituted for Phe, neither in a β-turn nor in an α-helix.

Co-reporter:Anton N. Tkachenko;Dr. Pavel K. Mykhailiuk;Dr. Sergii Afonin;Dr. Dmytro S. Radchenko;Vladimir S. Kubyshkin; Anne S. Ulrich; Igor V. Komarov
Angewandte Chemie International Edition 2013 Volume 52( Issue 5) pp:1486-1489
Publication Date(Web):
DOI:10.1002/anie.201208069
Co-reporter:Anton N. Tkachenko;Dr. Pavel K. Mykhailiuk;Dr. Sergii Afonin;Dr. Dmytro S. Radchenko;Vladimir S. Kubyshkin; Anne S. Ulrich; Igor V. Komarov
Angewandte Chemie 2013 Volume 125( Issue 5) pp:1526-1529
Publication Date(Web):
DOI:10.1002/ange.201208069
Co-reporter:Vladimir S. Kubyshkin, Pavel K. Mykhailiuk, Sergii Afonin, Anne S. Ulrich, and Igor V. Komarov
Organic Letters 2012 Volume 14(Issue 20) pp:5254-5257
Publication Date(Web):September 28, 2012
DOI:10.1021/ol302412a
Substituted prolines exert diverse effects on the backbone conformation of proteins. Novel difluoro-analogues were obtained by adding difluorocarbene to N-Boc-4,5-dehydroproline methyl ester, which gave the trans-adduct as the sole product with 71% yield. Upon cleavage of the N-protection group the free amino acid decomposed rapidly. Its incorporation into the proline-rich cell-penetrating “sweet arrow peptide” was thus accomplished using a dipeptide strategy. Two building blocks, containing either cis- or trans-4,5-difluoromethanoproline, were obtained by difluorocyclopropanation of the aminoacyl derivatives of 4,5-dehydroproline. The resulting dipeptides were stable under standard conditions of Fmoc solid phase peptide synthesis and, thus, suitable to study conformational effects.
Co-reporter:Dmytro S. Radchenko, Saskia Kattge, Sezgin Kara, Anne S. Ulrich, Sergii Afonin
Biochimica et Biophysica Acta (BBA) - Biomembranes (September 2016) Volume 1858(Issue 9) pp:2019-2027
Publication Date(Web):September 2016
DOI:10.1016/j.bbamem.2016.06.002
Methyl (2S,4S)-1-Boc-4-trifluoromethylpyrrolidine-2-carboxylate
(2S,4S)-1-(tert-Butoxycarbonyl)-4-(trifluoromethyl)pyrrolidine-2-carboxylic acid
2-Thiophenecarboxylic acid, 4,4'-(1-cyclopentene-1,2-diyl)bis[5-methyl-
(R)-1-Boc-2-[methoxy(methyl)carbamoyl]pyrrolidine
Thiophene, 3,3'-(1-cyclopentene-1,2-diyl)bis[5-chloro-2-methyl-
Sodium 2,3-dihydroxypropyl [(2r)-2,3-di(tetradecanoyloxy)propyl] Phosphate
L-Proline, 1-acetyl-4-fluoro-, methyl ester, cis-
L-Proline, 1-acetyl-4-fluoro-, methyl ester, (4R)-
(6R,9AR)-OCTAHYDRO-2H-PYRIDO[1,2-A]PYRAZIN-6-YLMETHANOL