Julia Kubanek

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Name: Kubanek, Julia
Organization: Georgia Institute of Technology , USA
Department: School of Chemistry and Biochemistry
Title: (PhD)

TOPICS

Co-reporter:Emily R. Schwartz, Remington X. Poulin, Nazia Mojib and Julia Kubanek  
Natural Product Reports 2016 vol. 33(Issue 7) pp:843-860
Publication Date(Web):19 Apr 2016
DOI:10.1039/C6NP00015K
Covering: January 2013 to online publication December 2014 This review summarizes recent research in the chemical ecology of marine pelagic ecosystems, and aims to provide a comprehensive overview of advances in the field in the time period covered. In order to highlight the role of chemical cues and toxins in plankton ecology this review has been organized by ecological interaction types starting with intraspecific interactions, then interspecific interactions (including facilitation and mutualism, host–parasite, allelopathy, and predator–prey), and finally community and ecosystem-wide interactions.
Co-reporter:Julia Kubanek
Journal of Chemical Ecology 2014 Volume 40( Issue 3) pp:218-219
Publication Date(Web):2014 March
DOI:10.1007/s10886-014-0394-4
Co-reporter:Kelsey L. Poulson-Ellestad;Christina M. Jones;Jessie Roy;Mark R. Viant;Facundo M. Fernández;Brook L. Nunn
PNAS 2014 Volume 111 (Issue 24 ) pp:9009-9014
Publication Date(Web):2014-06-17
DOI:10.1073/pnas.1402130111
Competition is a major force structuring marine planktonic communities. The release of compounds that inhibit competitors, a process known as allelopathy, may play a role in the maintenance of large blooms of the red-tide dinoflagellate Karenia brevis, which produces potent neurotoxins that negatively impact coastal marine ecosystems. K. brevis is variably allelopathic to multiple competitors, typically causing sublethal suppression of growth. We used metabolomic and proteomic analyses to investigate the role of chemically mediated ecological interactions between K. brevis and two diatom competitors, Asterionellopsis glacialis and Thalassiosira pseudonana. The impact of K. brevis allelopathy on competitor physiology was reflected in the metabolomes and expressed proteomes of both diatoms, although the diatom that co-occurs with K. brevis blooms (A. glacialis) exhibited more robust metabolism in response to K. brevis. The observed partial resistance of A. glacialis to allelopathy may be a result of its frequent exposure to K. brevis blooms in the Gulf of Mexico. For the more sensitive diatom, T. pseudonana, which may not have had opportunity to evolve resistance to K. brevis, allelopathy disrupted energy metabolism and impeded cellular protection mechanisms including altered cell membrane components, inhibited osmoregulation, and increased oxidative stress. Allelopathic compounds appear to target multiple physiological pathways in sensitive competitors, demonstrating that chemical cues in the plankton have the potential to alter large-scale ecosystem processes including primary production and nutrient cycling.
Co-reporter:Margaret E. Teasdale, Jacques Prudhomme, Manuel Torres, Matthew Braley, Serena Cervantes, Shanti C. Bhatia, James J. La Clair, Karine Le Roch, and Julia Kubanek
ACS Medicinal Chemistry Letters 2013 Volume 4(Issue 10) pp:989-993
Publication Date(Web):September 2, 2013
DOI:10.1021/ml4002858
A suite of pharmacokinetic and pharmacological studies show that bromophycolide A (1), an inhibitor of drug-sensitive and drug-resistant Plasmodium falciparum, displays a typical small molecule profile with low toxicity and good bioavailability. Despite susceptibility to liver metabolism and a short in vivo half-life, 1 significantly decreased parasitemia in a malaria mouse model. Combining these data with prior structure–activity relationship analyses, we demonstrate the potential for future development of 1 and its bioactive ester analogues.Keywords: Bromophycolide; malaria;
Co-reporter:R. Drew Sieg
Journal of Chemical Ecology 2013 Volume 39( Issue 6) pp:687-711
Publication Date(Web):2013 June
DOI:10.1007/s10886-013-0297-9
This review examines the state of the field for chemically mediated interactions involving marine angiosperms (seagrasses, mangroves, and salt marsh angiosperms). Small-scale interactions among these plants and their herbivores, pathogens, fouling organisms, and competitors are explored, as are community-level effects of plant secondary metabolites. At larger spatial scales, secondary metabolites from marine angiosperms function as reliable cues for larval settlement, molting, or habitat selection by fish and invertebrates, and can influence community structure and ecosystem function. Several recent studies illustrate the importance of chemical defenses from these plants that deter feeding by herbivores and infection by pathogens, but the extent to which allelopathic compounds kill or inhibit the growth of competitors is less clear. While some phenolic compounds such as ferulic acid and caffeic acid act as critical defenses against herbivores and pathogens, we find that a high total concentration of phenolic compounds within bulk plant tissues is not a strong predictor of defense. Residual chemical defenses prevent shredding or degradation of plant detritus by detritivores and microbes, delaying the time before plant matter can enter the microbial loop. Mangroves, marsh plants, and seagrasses remain plentiful sources of new natural products, but ecological functions are known for only a small proportion of these compounds. As new analytical techniques are incorporated into ecological studies, opportunities are emerging for chemical ecologists to test how subtle environmental cues affect the production and release of marine angiosperm chemical defenses or signaling molecules. Throughout this review, we point to areas for future study, highlighting opportunities for new directions in chemical ecology that will advance our understanding of ecological interactions in these valuable ecosystems.
Co-reporter:Margaret E. Teasdale, Tonya L. Shearer, Sebastian Engel, Troy S. Alexander, Craig R. Fairchild, Jacques Prudhomme, Manuel Torres, Karine Le Roch, William Aalbersberg, Mark E. Hay, and Julia Kubanek
The Journal of Organic Chemistry 2012 Volume 77(Issue 18) pp:8000-8006
Publication Date(Web):August 24, 2012
DOI:10.1021/jo301246x
Bioassay-guided fractionation of extracts from a Fijian red alga in the genus Callophycus resulted in the isolation of five new compounds of the diterpene-benzoate class. Bromophycoic acids A–E (1–5) were characterized by NMR and mass spectroscopic analyses and represent two novel carbon skeletons, one with an unusual proposed biosynthesis. These compounds display a range of activities against human tumor cell lines, malarial parasites, and bacterial pathogens including low micromolar suppression of MRSA and VREF.
Co-reporter:R. Drew Sieg, Kelsey L. Poulson-Ellestad and Julia Kubanek  
Natural Product Reports 2011 vol. 28(Issue 2) pp:388-399
Publication Date(Web):07 Dec 2010
DOI:10.1039/C0NP00051E
Covering: January 2009 to September 2010 inclusive
Co-reporter:Dr. E. Paige Stout;Serena Cervantes;Jacques Prudhomme;Dr. Stefan France;Dr. James J. LaClair;Dr. Karine LeRoch;Dr. Julia Kubanek
ChemMedChem 2011 Volume 6( Issue 9) pp:1572-1577
Publication Date(Web):
DOI:10.1002/cmdc.201100252
Co-reporter:An-Shen Lin, E. Paige Stout, Jacques Prudhomme, Karine Le Roch, Craig R. Fairchild, Scott G. Franzblau, William Aalbersberg, Mark E. Hay and Julia Kubanek
Journal of Natural Products 2010 Volume 73(Issue 2) pp:275-278
Publication Date(Web):February 8, 2010
DOI:10.1021/np900686w
Four new bromophycolides, R−U (1−4), were isolated from the Fijian red alga Callophycus serratus and were identified by 1D and 2D NMR and mass spectroscopic analyses. These compounds expand the known structural variety of diterpene-benzoate macrolides and exhibited modest cytotoxicity toward selected human cancer cell lines. Bromophycolide S (2) also showed submicromolar activity against the human malaria parasite Plasmodium falciparum.
Co-reporter:An-Shen Lin, Sebastian Engel, Benjamin A. Smith, Craig R. Fairchild, William Aalbersberg, Mark E. Hay, Julia Kubanek
Bioorganic & Medicinal Chemistry 2010 Volume 18(Issue 23) pp:8264-8269
Publication Date(Web):1 December 2010
DOI:10.1016/j.bmc.2010.10.010
Bioactivity-guided fractionation of the extract from a Fijian red alga Peyssonnelia sp. led to the isolation of two novel sterol glycosides 19-O-β-d-glucopyranosyl-19-hydroxy-cholest-4-en-3-one (1) and 19-O-β-d-N-acetyl-2-aminoglucopyranosyl-19-hydroxy-cholest-4-en-3-one (2), and two known alkaloids indole-3-carboxaldehyde (3) and 3-(hydroxyacetyl)indole (4). Their structures were characterized by 1D and 2D NMR and mass spectral analysis. The sterol glycosides inhibited cancer cell growth with mean IC50 values (for 11 human cancer cell lines) of 1.63 and 1.41 μM for 1 and 2, respectively. The most sensitive cancer cell lines were MDA-MB-468 (breast) and A549 (lung), with IC50’s in of 0.71–0.97 μM for 1 and 2. Modification of the sterol glycoside structures revealed that the α,β-unsaturated ketone at C-3 and oxygenation at C-19 of 1 and 2 are crucial for anticancer activity, whereas the glucosidic group was not essential but contributed to enhanced activity against the most sensitive cell lines.
Co-reporter:E. Paige Stout, Jacques Prudhomme, Karine Le Roch, Craig R. Fairchild, Scott G. Franzblau, William Aalbersberg, Mark E. Hay, Julia Kubanek
Bioorganic & Medicinal Chemistry Letters 2010 Volume 20(Issue 19) pp:5662-5665
Publication Date(Web):1 October 2010
DOI:10.1016/j.bmcl.2010.08.031
Three antimalarial meroditerpenes have been isolated from two Fijian red macroalgae. The absolute stereochemistry of callophycolide A (1), a unique macrolide from Callophycus serratus, was determined using a combination of Mosher’s ester analysis, circular dichroism analysis with a dimolybdenum tetraacetate complex, and conformational analysis using NOEs. In addition, two known tocopherols, β-tocopherylhydroquinone (4) and δ-tocopherylhydroquinone (5), were isolated from Amphiroa crassa. By oxidizing 5 to the corresponding δ-tocopherylquinone (6), antimalarial activity against the human malaria parasite Plasmodium falciparum was increased by more than 20-fold.
Co-reporter:Amy L. Lane, Laurlynn Mular, Elizabeth J. Drenkard, Tonya L. Shearer, Sebastian Engel, Suzanne Fredericq, Craig R. Fairchild, Jacques Prudhomme, Karine Le Roch, Mark E. Hay, William Aalbersberg, Julia Kubanek
Tetrahedron 2010 66(2) pp: 455-461
Publication Date(Web):
DOI:10.1016/j.tet.2009.11.042
Co-reporter:E. Paige Stout;James J. La Clair;Terry W. Snell;Tonya L. Shearer
PNAS 2010 107 (26 ) pp:11859-11864
Publication Date(Web):2010-06-29
DOI:10.1073/pnas.1006074107
Steroids play fundamental roles regulating mammalian reproduction and development. Although sex steroids and their receptors are well characterized in vertebrates and several arthropod invertebrates, little is known about the hormones and receptors regulating reproduction in other invertebrate species. Evolutionary insights into ancient endocrine pathways can be gained by elucidating the hormones and receptors functioning in invertebrate reproduction. Using a combination of genomic analyses, receptor imaging, ligand identification, target elucidation, and exploration of function through receptor knockdown, we now show that comparable progesterone chemoreception exists in the invertebrate monogonont rotifer Brachionus manjavacas, suggesting an ancient origin of the signal transduction systems commonly associated with the development and integration of sexual behavior in mammals.
Co-reporter:E. Paige Stout;James J. La Clair;Terry W. Snell;Tonya L. Shearer
PNAS 2010 107 (26 ) pp:11859-11864
Publication Date(Web):2010-06-29
DOI:10.1073/pnas.1006074107
Steroids play fundamental roles regulating mammalian reproduction and development. Although sex steroids and their receptors are well characterized in vertebrates and several arthropod invertebrates, little is known about the hormones and receptors regulating reproduction in other invertebrate species. Evolutionary insights into ancient endocrine pathways can be gained by elucidating the hormones and receptors functioning in invertebrate reproduction. Using a combination of genomic analyses, receptor imaging, ligand identification, target elucidation, and exploration of function through receptor knockdown, we now show that comparable progesterone chemoreception exists in the invertebrate monogonont rotifer Brachionus manjavacas, suggesting an ancient origin of the signal transduction systems commonly associated with the development and integration of sexual behavior in mammals.
Co-reporter:Kelsey L. Poulson, R. Drew Sieg and Julia Kubanek  
Natural Product Reports 2009 vol. 26(Issue 6) pp:729-745
Publication Date(Web):13 Mar 2009
DOI:10.1039/B806214P
Covering: 2006 to 2008 inclusive
Co-reporter:Amy L. Lane;Leonard Nyadong;Asiri S. Galhena;E. Paige Stout;Mark E. Hay;Facundo M. Fernandez;Tonya L. Shearer;May D. Wang;R. Mitchell Parry;Mark Kwasnik
PNAS 2009 Volume 106 (Issue 18 ) pp:7314-7319
Publication Date(Web):2009-05-05
DOI:10.1073/pnas.0812020106
Organism surfaces represent signaling sites for attraction of allies and defense against enemies. However, our understanding of these signals has been impeded by methodological limitations that have precluded direct fine-scale evaluation of compounds on native surfaces. Here, we asked whether natural products from the red macroalga Callophycus serratus act in surface-mediated defense against pathogenic microbes. Bromophycolides and callophycoic acids from algal extracts inhibited growth of Lindra thalassiae, a marine fungal pathogen, and represent the largest group of algal antifungal chemical defenses reported to date. Desorption electrospray ionization mass spectrometry (DESI-MS) imaging revealed that surface-associated bromophycolides were found exclusively in association with distinct surface patches at concentrations sufficient for fungal inhibition; DESI-MS also indicated the presence of bromophycolides within internal algal tissue. This is among the first examples of natural product imaging on biological surfaces, suggesting the importance of secondary metabolites in localized ecological interactions, and illustrating the potential of DESI-MS in understanding chemically-mediated biological processes.
Co-reporter:Amy L. Lane, E. Paige Stout, An-Shen Lin, Jacques Prudhomme, Karine Le Roch, Craig R. Fairchild, Scott G. Franzblau, Mark E. Hay, William Aalbersberg and Julia Kubanek
The Journal of Organic Chemistry 2009 Volume 74(Issue 7) pp:2736-2742
Publication Date(Web):March 9, 2009
DOI:10.1021/jo900008w
Bromophycolides J−Q (1−8) were isolated from extracts of the Fijian red alga Callophycus serratus and identified with 1D and 2D NMR spectroscopy and mass spectral analyses. These diterpene−benzoate macrolides represent two novel carbon skeletons and add to the 10 previously reported bromophycolides (9−18) from this alga. Among these 18 bromophycolides, several exhibited activities in the low micromolar range against the human malaria parasite Plasmodium falciparum.
Co-reporter:Ren-Wang Jiang, Amy L. Lane, Lauren Mylacraine, Kenneth I. Hardcastle, Craig R. Fairchild, William Aalbersberg, Mark E. Hay and Julia Kubanek
Journal of Natural Products 2008 Volume 71(Issue 9) pp:1616-1619
Publication Date(Web):September 3, 2008
DOI:10.1021/np800307h
Cytotoxicity-guided fractionation of the green macroalga Tydemania expeditionis led to isolation of four sulfate-conjugated triterpenoids including one new lanostane-type triterpenoid disulfate, lanosta-8-en-3,29-diol-23-oxo-3,29-disodium sulfate (1), and three known cycloartane-type triterpenoid disulfates, cycloartan-3,29-diol-23-one 3,29-disodium sulfate (2), cycloart-24-en-3,29-diol-23-one 3,29-disodium sulfate (3), and cycloartan-3,23,29-triol 3,29-disodium sulfate (4). Extensive 1D and 2D NMR analyses in combination with X-ray crystallography established the structure and absolute configuration of 1 and allowed determination of the absolute configurations of 2−4 with a revision of previously assigned configuration at C-5. Each natural product was moderately cytotoxic in tumor cell and invertebrate toxicity assays. Of the natural products, only 4 exhibited significant antifungal activity at whole-tissue natural concentrations against the marine pathogen Lindra thalassiae. Comparison of the biological activities of natural products with their desulfated derivatives indicated that sulfation does not appear to confer cytotoxicity or antifungal activity.
Co-reporter:Ren-Wang Jiang, Mark E. Hay, Craig R. Fairchild, Jacques Prudhomme, Karine Le Roch, William Aalbersberg, Julia Kubanek
Phytochemistry 2008 Volume 69(Issue 13) pp:2495-2500
Publication Date(Web):October 2008
DOI:10.1016/j.phytochem.2008.07.005
Phytochemical analysis of Fijian populations of the green alga Tydemania expeditionis led to the isolation of two unsaturated fatty acids, 3(ζ)-hydroxy-octadeca-4(E),6(Z),15(Z)-trienoic acid (1) and 3(ζ)-hydroxy-hexadeca-4(E),6(Z)-dienoic acid (2), along with the known 3(ζ)-hydroxy-octadeca-4(E),6(Z)-dienoic acid (4). Investigations of the red alga Hydrolithon reinboldii led to identification of a glycolipid, lithonoside (3), and five known compounds, 15-tricosenoic acid, hexacosa-5,9-dienoic methyl ester, β-sitosterol, 10(S)-hydroxypheophytin A, and 10(R)-hydroxypheophytin A. The structures of 1–3 were elucidated by spectroscopic methods (1D and 2D NMR spectroscopy and ESI-MS). Compounds 1, 2, and 4, containing conjugated double bonds, demonstrated moderate inhibitory activity against a panel of tumor cell lines (including breast, colon, lung, prostate and ovarian cells) with IC50 values ranging from 1.3 to 14.4 μM. The similar cell selectivity patterns of these three compounds suggest that they might act by a common, but unknown, mechanism of action.From the Fijian green alga Tydemania expeditionis, two unsaturated fatty acids (1−2) were isolated plus one known fatty acid (4). A glycolipid, lithonoside (3) and five known natural products were also identified from the red alga Hydrolithon reinboldii. Compounds 1, 2, and 4 demonstrated moderate inhibitory activity against tumor cell lines with IC50s of 1.3–14.4 μM.
Co-reporter:Amy L. Lane, Julia Kubanek
Phytochemistry 2006 Volume 67(Issue 12) pp:1224-1231
Publication Date(Web):June 2006
DOI:10.1016/j.phytochem.2006.05.007
Vascular plants produce a variety of molecules of phenylpropanoid biosynthetic origin, including lignoids. Recent investigations indicated that in freshwater plants, some of these natural products function as chemical defenses against generalist consumers such as crayfish. Certain structural features are shared among several of these anti-herbivore compounds, including phenolic, methoxy, methylenedioxy, and lactone functional groups. To test the relative importance of various functional groups in contributing to the feeding deterrence of phenylpropanoid-based natural products, we compared the feeding behavior of crayfish offered artificial diets containing analogs of elemicin (1) and β-apopicropodophyllin (2), chemical defenses of the freshwater macrophyte Micranthemum umbrosum. Both allyl and methoxy moieties of 1 contributed to feeding deterrence. Disruption of the lactone moiety of 2 reduced its deterrence. Finally, feeding assays testing effects of 1 and 2 at multiple concentrations established that these two natural products interact additively in deterring crayfish feeding.Methoxy, allyl, and lactone functional groups affect the potency of phenylpropanoid and lignoid chemical defenses for a freshwater macrophyte.
Co-reporter:R. Drew Sieg, Kevin Wolfe, Drew Willey, Vicky Ortiz-Santiago, Julia Kubanek
Journal of Experimental Marine Biology and Ecology (August 2013) Volume 446() pp:122-130
Publication Date(Web):1 August 2013
DOI:10.1016/j.jembe.2013.05.007
•Chemical defenses produced by salt marsh plants deter associated snails and fungi.•The efficacy of chemical defenses varies among salt marsh angiosperm species.•Structural or nutritional traits do not explain which plants are preferred by snails.•Weakly defended plants (S. alterniflora) are prone to fungal farming by snails.Within coastal salt marshes of eastern North America, the snail Littoraria irrorata facilitates fungal growth on live plant tissues to gain access to a palatable and nutritious fungal food source. This snail–fungal mutualism increases exposure of the foundation species Spartina alterniflora to infection, whereas fungal farming on other local marsh plants is rarely observed. We sought to identify traits from five salt marsh angiosperm species, such as chemical defenses against snails or fungi, which restrict L. irrorata habitat choice, feeding patterns, and ability to establish fungal farms. In the field and in mesocosm experiments, L. irrorata densities were significantly higher on S. alterniflora than on other available plants, indicating that S. alterniflora is a favored habitat for L. irrorata. Highly avoided plants were rich in chemical defenses that rendered these plants unpalatable to L. irrorata in feeding trials, whereas S. alterniflora extracts deterred L. irrorata feeding only slightly. Removal of plant structure did not alter L. irrorata preferences indicating a negligible role of tissue toughness as a defense. All plants in our study produced compounds that inhibited growth of fungi typically farmed by L. irrorata, although S. alterniflora antifungal compounds were weaker than those of other plant species, consistent with the observation of fungi only on wounded S. alterniflora tissues. We propose that the weak chemical defenses produced by S. alterniflora make it a preferred plant for fungal farming, whereas less abundant species that invest in potent chemical defenses against grazers and fungi are not as frequently colonized, consumed, or subjected to fungal farming by L. irrorata. The inability of S. alterniflora to adequately deter herbivores and pathogens may lead to increasing losses in plant biomass and reduce the ecosystem services provided by this foundational species.
bromophycoic acid E
bromophycoic acid D
bromophycoic acid C
bromophycoic acid B
bromophycoic acid A
19-O-(2-acetylamino-2-deoxy-beta-D-glucopyranosyl)-19-hydroxy-cholest-4-en-3-one
19-O-beta-D-glucopyranosyl-19-hydroxy-cholest-4-en-3-one
callophycolide A
bromophycolide U
bromophycolide T