Masakazu Tanaka

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Organization: Nagasaki University
Department: Graduate School of Pharmaceutical Sciences
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Co-reporter:Makoto Oba, Masayuki Kunitake, Takuma Kato, Atsushi Ueda, and Masakazu Tanaka
Bioconjugate Chemistry July 19, 2017 Volume 28(Issue 7) pp:1801-1801
Publication Date(Web):June 12, 2017
DOI:10.1021/acs.bioconjchem.7b00190
Cell-penetrating peptides are receiving increasing attention as drug delivery tools, and the search for peptides with high cell-penetrating ability and negligible cytotoxicity has become a critical research topic. Herein, cyclic α,α-disubstituted α-amino acids were introduced into arginine-rich peptides and an additional staple was provided in the side chain. The peptides designed in the present study showed more enhanced and prolonged cell-penetrating abilities than an arginine nonapeptide due to high resistance to protease and conformationally stable helical structures.
Co-reporter:Kaori Furukawa;Makoto Oba;Kotomi Toyama;George Ouma Opiyo;Yosuke Demizu;Masaaki Kurihara;Mitsunobu Doi
Organic & Biomolecular Chemistry 2017 vol. 15(Issue 30) pp:6302-6305
Publication Date(Web):2017/08/02
DOI:10.1039/C7OB01374D
We developed a novel methodology using cyclic α,α-disubstituted α-amino acids (dAAs) with an acetal-side chain to control peptide secondary structures. The introduction of cyclic dAAs into peptides contributed to the stabilization of peptide secondary structures as a helix, while an acidic treatment of peptides resulted in a marked conformational change.
Co-reporter:Kaori Furukawa;Makoto Oba;George Ouma Opiyo;Mitsunobu Doi
European Journal of Organic Chemistry 2016 Volume 2016( Issue 17) pp:2988-2998
Publication Date(Web):
DOI:10.1002/ejoc.201600241

The chiral cyclic α,α-disubstituted α-amino acids, Hms[(–)-Men] and Hms[(+)-Men] with (–)- and (+)-menthones in their side-chains, respectively, were designed and synthesized. Hms[(–)-Men] homopeptides and Hms[(–)/(+)-Men]-containing l-Leu-based peptides were prepared in order to investigate the conformational properties of Hms[(–)/(+)-Men]. The preferred conformations of the Hms[(–)/(+)-Men]-containing peptides were determined by FTIR, 1H NMR, and CD spectroscopy in solution, and by X-ray crystallographic analysis in the crystal state. Conformational analysis in solution revealed similar right-handed (P) 310-helical structures for the Hms[(–)/(+)-Men]-containing octapeptides. In the solid state of the hexapeptides, the peptide main-chain structures were mostly similar; however, some differences were observed in the side-chains. The Hms[(–)/(+)-Men] may function as helical inducers, but their side-chain chiralities had only a negligible effect on their helical-screw control of l-Leu-based peptides.

Co-reporter:Atsushi Ueda, Makoto Oba, Yuki Izumi, Yasuhito Sueyoshi, Mitsunobu Doi, Yosuke Demizu, Masaaki Kurihara, Masakazu Tanaka
Tetrahedron 2016 Volume 72(Issue 39) pp:5864-5871
Publication Date(Web):29 September 2016
DOI:10.1016/j.tet.2016.08.011
The chiral deuterium- and 13C-isotope-labeled α-aminoisobutyric acids CD3-Aib and 13CH3-Aib were enantioselectively synthesized from L-Ala aldimine using simplified Maruoka chiral phase-transfer catalysts. Homo-chiral (S)-CD3-Aib homopeptides, up to decamers, were prepared. A (R)-CD3-Aib polymer and (S)-13CH3-Aib polymer were also prepared. Conformational studies on homopeptides using CD spectra and an X-ray crystallographic analysis revealed that the preferred conformations were 310-helical structures comprising equal amounts of right-handed (P) and left-handed (M) helical-screw structures. The α-carbon chiral centers induced by the D- or 13C-isotope substitution of Aib were incapable of controlling the helical-screw directions of their oligopeptides and short polymers.
Co-reporter:Tomohiro Umeno, Atsushi Ueda, Makoto Oba, Mitsunobu Doi, Takayuki Hirata, Hiroshi Suemune, Masakazu Tanaka
Tetrahedron 2016 Volume 72(Issue 22) pp:3124-3131
Publication Date(Web):2 June 2016
DOI:10.1016/j.tet.2016.04.040
l-Leu-based peptides having chiral six-membered ring amino acids: Boc-{l-Leu-l-Leu-[(1R,3R)- or (1S,3R)-Ac6c3M]}n-OMe [n=1 (2), 2 (4), 3 (5)], were synthesized. A conformational analysis using FTIR absorption and NOESY NMR spectra revealed that these hexa- and nonapeptides having (1R,3R)-Ac6c3M or (1S,3R)-Ac6c3M formed helical structures in CDCl3 solution, while that using CD spectra suggested that the nonapeptide 5b having (1S,3R)-Ac6c3M become more right-handed (P) α-helical than the nonapeptide 5a having (1R,3R)-Ac6c3M in TFE solution. An X-ray crystallographic analysis showed that the hexapeptide 4b having (1S,3R)-Ac6c3M formed a partially distorted right-handed (P) 310-/α-helical structure in the crystal state, while the nonapeptides 5a and 5b having (1R,3R)-Ac6c3M or (1S,3R)-Ac6c3M formed similar right-handed (P) α-helical backbone structures.
Co-reporter:Atsushi Ueda, Tomohiro Umeno, Mitsunobu Doi, Kengo Akagawa, Kazuaki Kudo, and Masakazu Tanaka
The Journal of Organic Chemistry 2016 Volume 81(Issue 15) pp:6343-6356
Publication Date(Web):July 6, 2016
DOI:10.1021/acs.joc.6b00982
Helical peptide foldamer catalyzed Michael addition reactions of nitroalkane or dialkyl malonate to α,β-unsaturated ketones are reported along with the mechanistic considerations of the enantio-induction. A wide variety of α,β-unsaturated ketones, including β-aryl, β-alkyl enones, and cyclic enones, were found to be catalyzed by the helical peptide to give Michael adducts with high enantioselectivities (up to 99%). On the basis of X-ray crystallographic analysis and depsipeptide study, the amide protons, N(2)–H and N(3)–H, at the N terminus in the α-helical peptide catalyst were crucial for activating Michael donors, while the N-terminal primary amine activated Michael acceptors through the formation of iminium ion intermediates.
Co-reporter:Kazuhiro Tanda, Ryo Eto, Kazuya Kato, Makoto Oba, Atsushi Ueda, Hiroshi Suemune, Mitsunobu Doi, Yosuke Demizu, Masaaki Kurihara, Masakazu Tanaka
Tetrahedron 2015 Volume 71(Issue 23) pp:3909-3914
Publication Date(Web):10 June 2015
DOI:10.1016/j.tet.2015.04.031
Chiral cyclic α,α-disubstituted α-amino acids with four chiral centers at their acetal moieties were synthesized. An X-ray crystallographic analysis of homo-chiral tripeptide with (2R,3R)-butane-2,3-diol acetal moieties revealed that the tripeptide formed both (P) and (M) helical structures, and all peptide main-chain N(i)–H were intramolecularly hydrogen-bonded with the side-chain acetal –O– of the same amino acid residues (i). The effect of the four chiral centers in the amino acid residue on the peptide backbone helical-screw control was very weak.
Co-reporter:Takayuki Hirata, Atsushi Ueda, Makoto Oba, Mitsunobu Doi, Yosuke Demizu, Masaaki Kurihara, Masanobu Nagano, Hiroshi Suemune, Masakazu Tanaka
Tetrahedron 2015 Volume 71(Issue 16) pp:2409-2420
Publication Date(Web):22 April 2015
DOI:10.1016/j.tet.2015.02.075
Co-reporter:Makoto Oba, Naomi Kawabe, Hiroomi Takazaki, Yosuke Demizu, Mitsunobu Doi, Masaaki Kurihara, Hiroshi Suemune, Masakazu Tanaka
Tetrahedron 2014 70(46) pp: 8900-8907
Publication Date(Web):
DOI:10.1016/j.tet.2014.09.086
Co-reporter:Makoto Oba, Hiroomi Takazaki, Naomi Kawabe, Mitsunobu Doi, Yosuke Demizu, Masaaki Kurihara, Hiromu Kawakubo, Masanobu Nagano, Hiroshi Suemune, and Masakazu Tanaka
The Journal of Organic Chemistry 2014 Volume 79(Issue 19) pp:9125-9140
Publication Date(Web):September 2, 2014
DOI:10.1021/jo501493x
A chiral five-membered ring α,α-disubstituted α-amino acid (R,R)-Ac5cdN3 having two azido functional groups has been designed and synthesized. The cyclic amino acid (R,R)-Ac5cdN3 could be efficiently converted into several cyclic amino acids with various two 1,2,3-triazole functional groups. (R,R)-Ac5cdN3 homochiral peptides (up to hexapeptide) and (R,R)-Ac5cdN3-containing l-Leu-based peptides were prepared, and their conversion of azido functional groups into triazole groups was completed. The preferred conformation of oligomers, before and after the “click reaction”, together with the azido gauche effect of amino acid residues were studied using FT-IR absorption, CD, 1H NMR, and X-ray crystallographic analysis. The cyclic amino acid (R,R)-Ac5cdN3 could be used as a helical conformation controlling residue and also has a versatile functionalizing site in its oligopeptides.
Co-reporter:Makoto Oba;Naoko Ishikawa;Yosuke Demizu;Masaaki Kurihara;Hiroshi Suemune
European Journal of Organic Chemistry 2013 Volume 2013( Issue 34) pp:7679-7682
Publication Date(Web):
DOI:10.1002/ejoc.201301450

Abstract

(R,R)-Ac6c4BD homopeptides form helical structures with slight control of the helical screw sense to the right-handed form. The chiral acetal moieties in (R,R)-Ac6c4BD are changeable in the peptide state.

Co-reporter:Makoto Oba, Atsushi Shimabukuro, Miyako Ono, Mitsunobu Doi, Masakazu Tanaka
Tetrahedron: Asymmetry 2013 Volume 24(Issue 8) pp:464-467
Publication Date(Web):30 April 2013
DOI:10.1016/j.tetasy.2013.03.010
A method of synthesizing an optically active cyclic methionine analogue, 3-aminotetrahydrothiophene-3-carboxylic acid (At5c), is described. A Bucherer–Bergs reaction of 4,5-dihydro-3(2H)-thiophenone and the subsequent alkaline hydrolysis of a hydantoin, followed by Cbz protection of the amine, afforded racemic Cbz-At5c (±)-3 in excellent yield. Diastereomeric esters derived from Cbz-At5c (±)-3 and (R)-BINOL could be separated by column chromatography to give both diastereomers with >99% de. X-ray crystallographic analysis revealed the absolute configuration of the synthesized amino acid derived from the less polar diastereomeric ester to be (S).(3S)-(Benzyloxycarbonylamino)tetrahydrothiophene-3-carboxylic acid (R)-2′-hydroxy-[1,1′]-binaphthyl esterC33H27NO5S[α]D26=+4.6 (c 1.06, MeOH)Absolute configuration: (3S),(R)(3R)-(Benzyloxycarbonylamino)tetrahydrothiophene-3-carboxylic acid (R)-2′-hydroxy-[1,1′]-binaphthyl esterC33H27NO5S[α]D26=+12.9 (c 1.05, MeOH)Absolute configuration: (3R),(R)(S)-3-(Benzyloxycarbonylamino)tetrahydrothiophene-3-carboxylic acid [Cbz-(S)-At5c]C13H15NO4S[α]D26=-3.4 (c 1.00, MeOH)Absolute configuration: (S)(3S)-(Benzyloxycarbonylamino)tertrahydrothiophene-3-carboxylic acid (1S,2R,5S)-2-isopropyl-5-methyl-cyclohexyl esterC23H32NO4S[α]D25=+7.2 (c 1.00, CHCl3)Absolute configuration: (3S),(1S,2R,5S)
Co-reporter:Kosuke Anan;Yosuke Demizu;Makoto Oba;Masaaki Kurihara;Mitsunobu Doi;Hiroshi Suemune
Helvetica Chimica Acta 2012 Volume 95( Issue 10) pp:1694-1713
Publication Date(Web):
DOI:10.1002/hlca.201200403

Abstract

Chiral bicyclic α-amino acid (R,R)-Ab5,6=c with stereogenic centers at the γ-position of fused-ring junctions, and its enantiomer (S,S)-Ab5,6=c, were synthesized. The CD spectra of (R,R)-Ab5,6=c oligomers indicated that the (R,R)-Ab5,6=c hexapeptide formed a mixture of right-handed (P)- and left-handed (M)-310-helices, while, in the (R,R)-Ab5,6=c nonapeptide, a right-handed (P)-310-helix slightly dominated over the (M)-helix. X-Ray crystallographic analyses of (S,S)-tripeptide and (R,R)-hexapeptide revealed that both the tripeptide and hexapeptide formed a mixture of (P)- and (M)-310-helices, respectively. These results indicated that the side-chain environments around the stereogenic centers are particularly important to control the helical-screw handedness of foldamers.

Co-reporter:Dr. Yosuke Demizu; Mitsunobu Doi;Dr. Masaaki Kurihara; Tokumi Maruyama; Hiroshi Suemune; Masakazu Tanaka
Chemistry - A European Journal 2012 Volume 18( Issue 8) pp:2430-2439
Publication Date(Web):
DOI:10.1002/chem.201102902

Abstract

Chiral cyclic α,α-disubstituted amino acids, (3S,4S)- and (3R,4R)-1-amino-3,4-(dialkoxy)cyclopentanecarboxylic acids ((S,S)- and (R,R)-Ac5cdOR; R: methyl, methoxymethyl), were synthesized from dimethyl L-(+)- or D-(−)-tartrate, and their homochiral homoligomers were prepared by solution-phase methods. The preferred secondary structure of the (S,S)-Ac5cdOMe hexapeptide was a left-handed (M) 310 helix, whereas those of the (S,S)-Ac5cdOMe octa- and decapeptides were left-handed (M) α helices, both in solution and in the crystal state. The octa- and decapeptides can be well dissolved in pure water and are more α helical in water than in 2,2,2-trifluoroethanol solution. The left-handed (M) helices of the (S,S)-Ac5cdOMe homochiral homopeptides were exclusively controlled by the side-chain chiral centers, because the cyclic amino acid (S,S)-Ac5cdOMe does not have an α-carbon chiral center but has side-chain γ-carbon chiral centers.

Co-reporter:Yosuke Demizu, Mitsunobu Doi, Masaaki Kurihara, Haruhiro Okuda, Masanobu Nagano, Hiroshi Suemune and Masakazu Tanaka  
Organic & Biomolecular Chemistry 2011 vol. 9(Issue 9) pp:3303-3312
Publication Date(Web):11 Mar 2011
DOI:10.1039/C0OB01146K
Four types of α,α-disubstituted amino acids {i.e., α-aminoisobutyric acid (Aib), 1-aminocyclopentanecarboxylic acid (Ac5c), (3S,4S)-1-amino-(3,4-dimethoxy)cyclopentanecarboxylic acid [(S,S)-Ac5cdOM] and its enantiomer (R,R)-Ac5cdOM} were introduced into L-leucine-based hexapeptides and nonapeptides. The dominant conformations of eight peptides: Cbz-(L-Leu-L-Leu-dAA)2-OMe [dAA = 1: Aib; 2: Ac5c; 3: (S,S)-Ac5cdOM; 4: (R,R)-Ac5cdOM] and Boc-(L-Leu-L-Leu-dAA)3-OMe [dAA = 5: Aib; 6: Ac5c; 7: (S,S)-Ac5cdOM; 8: (R,R)-Ac5cdOM], were investigated by IR, CD spectra and X-ray crystallographic analysis. The CD spectra revealed that Aib hexapeptide 1 and Ac5c hexapeptide 2 formed right-handed (P) 310-helices, while Ac5cdOM hexapeptides 3 and 4 formed a mixture of (P) 310- and α-helices. The Aib nonapeptide 5 formed a (P) 310-helix, the Ac5c nonapeptide 6 formed a mixture of (P) 310- and α-helices, and the Ac5cdOM nonapeptides 7 and 8 formed (P) α-helices. X-Ray crystallographic analysis revealed that the Aib hexapeptide 1 formed a (P) 310-helix, while (S,S)-Ac5cdOM hexapeptide 3 formed a (P) α-helix. In addition, the Ac5c nonapeptide 6 and (R,R)-Ac5cdOM nonapeptide 8 formed (P) α-helices. The Aib and achiral Ac5c residues have the propensity to form 310-helices in short peptides, whereas the chiral Ac5cdOM residues have a penchant for forming α-helices.
Co-reporter:Masanobu Nagano, Mitsunobu Doi, Masaaki Kurihara, Hiroshi Suemune and Masakazu Tanaka
Organic Letters 2010 Volume 12(Issue 15) pp:3564-3566
Publication Date(Web):July 6, 2010
DOI:10.1021/ol101435w
Chiral cyclic α-amino acid containing oligopeptide catalyzed highly enantioselective epoxidation of α,β-unsaturated ketones and the α-helical secondary structure of the peptide catalyst were revealed by X-ray crystallographic analysis.
Co-reporter:Yosuke Demizu, Mitsunobu Doi, Masaaki Kurihara, Haruhiro Okuda, Masanobu Nagano, Hiroshi Suemune and Masakazu Tanaka
Organic & Biomolecular Chemistry 2011 - vol. 9(Issue 9) pp:NaN3312-3312
Publication Date(Web):2011/03/11
DOI:10.1039/C0OB01146K
Four types of α,α-disubstituted amino acids {i.e., α-aminoisobutyric acid (Aib), 1-aminocyclopentanecarboxylic acid (Ac5c), (3S,4S)-1-amino-(3,4-dimethoxy)cyclopentanecarboxylic acid [(S,S)-Ac5cdOM] and its enantiomer (R,R)-Ac5cdOM} were introduced into L-leucine-based hexapeptides and nonapeptides. The dominant conformations of eight peptides: Cbz-(L-Leu-L-Leu-dAA)2-OMe [dAA = 1: Aib; 2: Ac5c; 3: (S,S)-Ac5cdOM; 4: (R,R)-Ac5cdOM] and Boc-(L-Leu-L-Leu-dAA)3-OMe [dAA = 5: Aib; 6: Ac5c; 7: (S,S)-Ac5cdOM; 8: (R,R)-Ac5cdOM], were investigated by IR, CD spectra and X-ray crystallographic analysis. The CD spectra revealed that Aib hexapeptide 1 and Ac5c hexapeptide 2 formed right-handed (P) 310-helices, while Ac5cdOM hexapeptides 3 and 4 formed a mixture of (P) 310- and α-helices. The Aib nonapeptide 5 formed a (P) 310-helix, the Ac5c nonapeptide 6 formed a mixture of (P) 310- and α-helices, and the Ac5cdOM nonapeptides 7 and 8 formed (P) α-helices. X-Ray crystallographic analysis revealed that the Aib hexapeptide 1 formed a (P) 310-helix, while (S,S)-Ac5cdOM hexapeptide 3 formed a (P) α-helix. In addition, the Ac5c nonapeptide 6 and (R,R)-Ac5cdOM nonapeptide 8 formed (P) α-helices. The Aib and achiral Ac5c residues have the propensity to form 310-helices in short peptides, whereas the chiral Ac5cdOM residues have a penchant for forming α-helices.
Co-reporter:Kaori Furukawa, Makoto Oba, Kotomi Toyama, George Ouma Opiyo, Yosuke Demizu, Masaaki Kurihara, Mitsunobu Doi and Masakazu Tanaka
Organic & Biomolecular Chemistry 2017 - vol. 15(Issue 30) pp:NaN6305-6305
Publication Date(Web):2017/06/27
DOI:10.1039/C7OB01374D
We developed a novel methodology using cyclic α,α-disubstituted α-amino acids (dAAs) with an acetal-side chain to control peptide secondary structures. The introduction of cyclic dAAs into peptides contributed to the stabilization of peptide secondary structures as a helix, while an acidic treatment of peptides resulted in a marked conformational change.
Butanedioic acid, 2-(methoxymethoxy)-, 1,4-dimethyl ester, (2S)-
2-Pentanone, 4-(2-furanyl)-5-nitro-, (4R)-
2-Pentanone, 4-(4-methoxyphenyl)-5-nitro-, (4S)-
2-Pentanone, 5-nitro-4-(4-nitrophenyl)-, (4S)-
Benzoic acid, 4-bromo-, 3-hydroxypropyl ester