Zhongping Tan

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Name: Tan, Zhongping
Organization: University of Colorado , USA
Department: Department of Chemistry and Biochemistry and BioFrontiers Institute
Title: Assistant(PhD)

TOPICS

Co-reporter:Patrick K. Chaffey, Xiaoyang Guan, Chao Chen, Yuan Ruan, Xinfeng Wang, Amy H. Tran, Theo N. Koelsch, Qiu Cui, Yingang Feng, and Zhongping Tan
Biochemistry June 13, 2017 Volume 56(Issue 23) pp:2897-2897
Publication Date(Web):May 11, 2017
DOI:10.1021/acs.biochem.7b00195
Protein glycosylation has been shown to have a variety of site-specific and glycan-specific effects, but so far, the molecular logic that leads to such observations has been elusive. Understanding the structural changes that occur and being able to correlate those with the physical properties of the glycopeptide are valuable steps toward being able to predict how specific glycosylation patterns will affect the stability of glycoproteins. By systematically comparing the structural features of the O-glycosylated carbohydrate-binding module of a Trichoderma reesei-derived Family 7 cellobiohydrolase, we were able to develop a better understanding of the influence of O-glycan structure on the molecule’s physical stability. Our results indicate that the previously observed stabilizing effects of O-glycans come from the introduction of new bonding interactions to the structure and increased rigidity, while the decreased stability seemed to result from the impaired interactions and increased conformational flexibility. This type of knowledge provides a powerful and potentially general mechanism for improving the stability of proteins through glycoengineering.
Co-reporter:Patrick K. Chaffey, Xiaoyang Guan, Xinfeng Wang, Yuan Ruan, Yaohao Li, Suzannah G. Miller, Amy H. Tran, Theo N. Koelsch, Lomax F. Pass, and Zhongping Tan
Biochemistry August 29, 2017 Volume 56(Issue 34) pp:4539-4539
Publication Date(Web):July 26, 2017
DOI:10.1021/acs.biochem.7b00483
Protein O-glycosylation is a diverse, common, and important post-translational modification of both proteins inside the cell and those that are secreted or membrane-bound. Much work has shown that O-glycosylation can alter the structure, function, and physical properties of the proteins to which it is attached. One gap remaining in our understanding of O-glycoproteins is how O-glycans might affect the folding of proteins. Here, we took advantage of synthetic, homogeneous O-glycopeptides to show that certain glycosylation patterns have an intrinsic effect, independent of any cellular folding machinery, on the folding pathway of a model O-glycoprotein, a carbohydrate binding module (CBM) derived from the Trichoderma reesei cellulase TrCel7A. The strongest effect, a 6-fold increase in overall folding rate, was observed when a single O-mannose was the glycan, and the glycosylation site was near the N-terminus of the peptide sequence. We were also able to show that glycosylation patterns affected the kinetics of each step in unique ways, which may help to explain the observations made here. This work is a first step toward quantitative understanding of how O-glycosylation might control, through intrinsic means, the folding of O-glycoproteins. Such an understanding is expected to facilitate future investigations into the effects of glycosylation on more biological processes related to protein folding.
Co-reporter:Xiaoyang Guan, Patrick K. Chaffey, Chen Zeng, Eric R. Greene, Liqun Chen, Matthew R. Drake, Claire Chen, Ari Groobman, Michael G. Resch, Michael E. Himmel, Gregg T. Beckham and Zhongping Tan  
Chemical Science 2015 vol. 6(Issue 12) pp:7185-7189
Publication Date(Web):21 Sep 2015
DOI:10.1039/C5SC02636A
Protein glycosylation is a ubiquitous post-translational modification in all kingdoms of life. Despite its importance in molecular and cellular biology, the molecular-level ramifications of O-glycosylation on biomolecular structure and function remain elusive. Here, we took a small model glycoprotein and changed the glycan structure and size, amino acid residues near the glycosylation site, and glycosidic linkage while monitoring any corresponding changes to physical stability and cellulose binding affinity. The results of this study reveal the collective importance of all the studied features in controlling the most pronounced effects of O-glycosylation in this system. Going forward, this study suggests the possibility of designing proteins with multiple improved properties by simultaneously varying the structures of O-glycans and amino acids local to the glycosylation site.
Co-reporter:Michael E. Himmel;Matthew R. Drake;Patrick K. Chaffey;Gregg T. Beckham;Eric R. Greene;Michael G. Resch;Liqun Chen
PNAS 2014 Volume 111 (Issue 21 ) pp:7612-7617
Publication Date(Web):2014-05-27
DOI:10.1073/pnas.1402518111
The majority of biological turnover of lignocellulosic biomass in nature is conducted by fungi, which commonly use Family 1 carbohydrate-binding modules (CBMs) for targeting enzymes to cellulose. Family 1 CBMs are glycosylated, but the effects of glycosylation on CBM function remain unknown. Here, the effects of O-mannosylation are examined on the Family 1 CBM from the Trichoderma reesei Family 7 cellobiohydrolase at three glycosylation sites. To enable this work, a procedure to synthesize glycosylated Family 1 CBMs was developed. Subsequently, a library of 20 CBMs was synthesized with mono-, di-, or trisaccharides at each site for comparison of binding affinity, proteolytic stability, and thermostability. The results show that, although CBM mannosylation does not induce major conformational changes, it can increase the thermolysin cleavage resistance up to 50-fold depending on the number of mannose units on the CBM and the attachment site. O-Mannosylation also increases the thermostability of CBM glycoforms up to 16 °C, and a mannose disaccharide at Ser3 seems to have the largest themostabilizing effect. Interestingly, the glycoforms with small glycans at each site displayed higher binding affinities for crystalline cellulose, and the glycoform with a single mannose at each of three positions conferred the highest affinity enhancement of 7.4-fold. Overall, by combining chemical glycoprotein synthesis and functional studies, we show that specific glycosylation events confer multiple beneficial properties on Family 1 CBMs.
Co-reporter:Xiaoyang Guan, Matthew R. Drake, and Zhongping Tan
Organic Letters 2013 Volume 15(Issue 24) pp:6128-6131
Publication Date(Web):November 22, 2013
DOI:10.1021/ol402984r
Human galanin-like peptide (hGALP) is a newly discovered hypothalamic peptide that plays important roles in the regulation of food intake and energy balance. Here, we demonstrate that the aspartic acid ligation can be employed to achieve an efficient synthesis of hGALP. The total synthesis of hGALP enhances our ability to study its biology and facilitates the development of more stable analogues.
Co-reporter:Liqun Chen, Zhongping Tan
Tetrahedron Letters 2013 Volume 54(Issue 17) pp:2190-2193
Publication Date(Web):24 April 2013
DOI:10.1016/j.tetlet.2013.02.060
A convenient and highly efficient synthesis of mono-, di-, and tri-O-mannosylated Fmoc-Ser and Thr is described. The short synthetic route and high overall yield highlight the synthetic utility of this unified approach.a
Co-reporter:Christina M. Payne;Michael G. Resch;Michael F. Crowley;Liqun Chen;Michael E. Himmel;Mats Sandgren;Larry E. Taylor II;Jerry Ståhlberg;Ingeborg Stals;Gregg T. Beckham
PNAS 2013 Volume 110 (Issue 36 ) pp:14646-14651
Publication Date(Web):2013-09-03
DOI:10.1073/pnas.1309106110
Plant cell-wall polysaccharides represent a vast source of food in nature. To depolymerize polysaccharides to soluble sugars, many organisms use multifunctional enzyme mixtures consisting of glycoside hydrolases, lytic polysaccharide mono-oxygenases, polysaccharide lyases, and carbohydrate esterases, as well as accessory, redox-active enzymes for lignin depolymerization. Many of these enzymes that degrade lignocellulose are multimodular with carbohydrate-binding modules (CBMs) and catalytic domains connected by flexible, glycosylated linkers. These linkers have long been thought to simply serve as a tether between structured domains or to act in an inchworm-like fashion during catalytic action. To examine linker function, we performed molecular dynamics (MD) simulations of the Trichoderma reesei Family 6 and Family 7 cellobiohydrolases (TrCel6A and TrCel7A, respectively) bound to cellulose. During these simulations, the glycosylated linkers bind directly to cellulose, suggesting a previously unknown role in enzyme action. The prediction from the MD simulations was examined experimentally by measuring the binding affinity of the Cel7A CBM and the natively glycosylated Cel7A CBM-linker. On crystalline cellulose, the glycosylated linker enhances the binding affinity over the CBM alone by an order of magnitude. The MD simulations before and after binding of the linker also suggest that the bound linker may affect enzyme action due to significant damping in the enzyme fluctuations. Together, these results suggest that glycosylated linkers in carbohydrate-active enzymes, which are intrinsically disordered proteins in solution, aid in dynamic binding during the enzymatic deconstruction of plant cell walls.
Co-reporter:Xiaoyang Guan, Patrick K. Chaffey, Chen Zeng, Eric R. Greene, Liqun Chen, Matthew R. Drake, Claire Chen, Ari Groobman, Michael G. Resch, Michael E. Himmel, Gregg T. Beckham and Zhongping Tan
Chemical Science (2010-Present) 2015 - vol. 6(Issue 12) pp:NaN7189-7189
Publication Date(Web):2015/09/21
DOI:10.1039/C5SC02636A
Protein glycosylation is a ubiquitous post-translational modification in all kingdoms of life. Despite its importance in molecular and cellular biology, the molecular-level ramifications of O-glycosylation on biomolecular structure and function remain elusive. Here, we took a small model glycoprotein and changed the glycan structure and size, amino acid residues near the glycosylation site, and glycosidic linkage while monitoring any corresponding changes to physical stability and cellulose binding affinity. The results of this study reveal the collective importance of all the studied features in controlling the most pronounced effects of O-glycosylation in this system. Going forward, this study suggests the possibility of designing proteins with multiple improved properties by simultaneously varying the structures of O-glycans and amino acids local to the glycosylation site.