Shino Manabe

Find an error

Name:
Organization: RIKEN Advanced Science Institute
Department:
Title:
Co-reporter:Shino Manabe;Yukishige Ito
The Chemical Record 2014 Volume 14( Issue 3) pp:502-515
Publication Date(Web):
DOI:10.1002/tcr.201402004

Abstract

Pyranosides with 2,3-trans carbamate groups exhibit high 1,2-cis selectivity in glycosylation reactions. Using glycosyl donors with N-benzyl 2,3-trans carbamate groups, an anti-Helicobacter pylori oligosaccharide was synthesized in an efficient manner. Moreover, pyranosides with 2,3-trans carbamate groups readily undergo anomerization from the β to the α configuration under mild acidic conditions via endocyclic cleavage. Acyclic cations generated during the endocyclic cleavage reaction were captured using reduction and intramolecular Friedel–Crafts reaction. By exploiting this anomerization, multiply aligned 1,2-trans glycosyl bonds can be transformed to 1,2-cis glycosyl bonds in a single operation.

Co-reporter:Dr. Shino Manabe; Hiroko Satoh; Jürg Hutter;Dr. Hans Peter Lüthi;Dr. Teodoro Laino;Dr. Yukishige Ito
Chemistry - A European Journal 2014 Volume 20( Issue 1) pp:124-132
Publication Date(Web):
DOI:10.1002/chem.201303474

Abstract

Aminoglycosides containing a 2,3-trans carbamate group easily undergo anomerization from the 1,2-trans glycoside to the 1,2-cis isomer under mild acidic conditions. The N-substituent of the carbamate has a significant effect on the anomerization reaction; in particular, an N-acetyl group facilitated rapid and complete α-anomerization. The differences in reactivity due to the various N-substituents were supported by the results of DFT calculations; the orientation of the acetyl carbonyl group close to the anomeric position was found to contribute significantly to the directing of the anomerization reaction. By exploiting this reaction, oligoaminoglycosides with multiple 1,2-cis glycosidic bonds were generated from 1,2-trans glycosides in a one-step process.

Co-reporter:Hiroko Satoh and Shino Manabe  
Chemical Society Reviews 2013 vol. 42(Issue 10) pp:4297-4309
Publication Date(Web):30 Jan 2013
DOI:10.1039/C3CS35457A
This tutorial review focuses on the design of glycosyl donors, especially on attempts to control selectivity/reactivity by employing bulky substituents, cyclic protecting groups, or bridged structures. These structural modifications are performed to change the conformational distributions of pyranoside/furanoside rings. We also briefly discuss this issue with regard to studies on furanosides and enzymatic glycosylation reactions. Readers will find that some of the designed glycosyl donors have been used to achieve total syntheses of natural products.
Co-reporter:Shino Manabe, Masanori Yamaguchi and Yukishige Ito  
Chemical Communications 2013 vol. 49(Issue 75) pp:8332-8334
Publication Date(Web):25 Jul 2013
DOI:10.1039/C3CC43968B
The sulfonylcarbamate group is a unique hydroxyl protecting group. In contrast to typical acyl protecting groups, the sulfonylcarbamate group is stable under harsh basic conditions, while showing labile behavior under mild basic conditions. Its compatibility with other hydroxyl protecting groups and application to carbohydrate chemistry is demonstrated.
Co-reporter:Shino Manabe, Yukishige Ito
Tetrahedron Letters 2013 Volume 54(Issue 50) pp:6838-6840
Publication Date(Web):11 December 2013
DOI:10.1016/j.tetlet.2013.10.011
Hafnium(IV) tetratriflate was shown to be an effective catalyst for the regioselective reductive benzylidene ring opening with concurrent silylation reaction. The synthetic conditions were optimized, and the scope and limitations were identified. In addition to glucose and glycosamine derivatives, mannose and galactose were successfully employed as substrates. Various protecting groups such as acetyl, allyl, and benzyl were found to be stable under the reaction conditions. By using a deuterated reducing reagent, the reaction was deduced to proceed via an SN1 mechanism.
Co-reporter:Shino Manabe and Yukishige Ito
The Journal of Organic Chemistry 2013 Volume 78(Issue 9) pp:4568-4572
Publication Date(Web):April 8, 2013
DOI:10.1021/jo400282x
Hafnium(IV) tetratriflate was found to be a good activator of glycosyl fluoride. The protocol was operationally simple and was widely applicable to a variety of substrates in both solid-phase and solution-phase glycosylation reactions.
Co-reporter:Hiroko Satoh ; Shino Manabe ; Yukishige Ito ; Hans P. Lüthi ; Teodoro Laino ;Jürg Hutter
Journal of the American Chemical Society 2011 Volume 133(Issue 14) pp:5610-5619
Publication Date(Web):March 21, 2011
DOI:10.1021/ja201024a
An endocyclic pathway is proposed as a reaction mechanism for the anomerization from the β (1,2-trans) to the α (1,2-cis) configuration observed in glycosides carrying 2,3-trans cyclic protecting groups. This reaction occurs in the presence of a weak Lewis or Brønsted acid, while endocyclic cleavage (endocleavage) in typical glycosides was observed only when mediated by protic media or strong Lewis acids. To rationalize the behavior of this class of compounds, the reaction mechanism and the promoting factors of the endocleavage are investigated using quantum-mechanical (QM) calculations and experimental studies. We examine anomerization reactions of thioglycosides carrying 2,3-trans cyclic protecting groups, employing boron trifluoride etherate (BF3·OEt2) as a Lewis acid. The estimated theoretical reactivity, based on a simple model to predict transition state (TS) energies from the strain caused by the fused rings, is very close to the TS energies calculated by the TS search along the C1−C2 bond rotation after the endo C−O bond breaking. Excellent agreement is found between the predicted TS energies and the experimental reactivity ranking. The series of calculations and experiments strongly supports the predominance of the endocyclic rather than the exocyclic mechanism. Furthermore, these investigations suggest that the inner strain is the primary factor enhancing the endocleavage reaction. The effect of the cyclic protecting group in restricting the pyranoside ring to a 4C1 conformation, extensively discussed in conjunction with the stereoelectronic effect theory, is shown to be a secondary factor.
Co-reporter:Shino Manabe, Yoshiyuki Aihara and Yukishige Ito  
Chemical Communications 2011 vol. 47(Issue 34) pp:9720-9722
Publication Date(Web):25 Jul 2011
DOI:10.1039/C1CC13172A
Radical-mediated C-glycosylation of pyranosides with the 2,3-trans carbamate group was investigated. C-Glycosylation was achieved with high α-selectivity.
Co-reporter:Shino Manabe;Kazuyuki Ishii;Yukishige Ito
European Journal of Organic Chemistry 2011 Volume 2011( Issue 3) pp:497-516
Publication Date(Web):
DOI:10.1002/ejoc.201001278

Abstract

Glycosyl donors for the preparation of 1,2-cis glycosides of amino sugars have been developed. The 2,3-trans-cyclic-carbamate-carrying glycosyl donors were readily prepared from the corresponding known trichloroethyl carbamate protected amino sugars under standard hydroxy group benzylation conditions. The donors exhibit high 1,2-cis stereoselectivity towards secondary hydroxy group substrates. In the case of primary hydroxy acceptors, high stereoselectivities were achieved with the aid of the dioxane effect. After glycosylation, the carbamate was removed under alkaline conditions. Importantly, these glycosyl donors can be used in polymer-supported and solid-phase synthesis.

Co-reporter:Shino Manabe, Kazuyuki Ishii, Hiroko Satoh, Yukishige Ito
Tetrahedron 2011 67(51) pp: 9966-9974
Publication Date(Web):
DOI:10.1016/j.tet.2011.09.059
Co-reporter:Shino Manabe, Yukishige Ito
Tetrahedron Letters 2009 50(34) pp: 4827-4829
Publication Date(Web):
DOI:10.1016/j.tetlet.2009.05.119
Co-reporter:Shino Manabe Dr.;Kazuyuki Ishii Dr.;Daisuke Hashizume Dr.;Hiroyuki Koshino Dr.;Yukishige Ito Dr.
Chemistry - A European Journal 2009 Volume 15( Issue 28) pp:6894-6901
Publication Date(Web):
DOI:10.1002/chem.200900064

Abstract

2,3-trans-carbamate- and -carbonate-carrying pyranosides were very easily anomerised from the β to the α direction in the presence of a Lewis acid compared to other pyranosides. This reaction is caused by endocyclic cleavage of the pyranosides. Evidence for endocyclic cleavage of conformationally restricted pyranosides in the chair form was obtained by intra- and intermolecular Friedel–Crafts reactions, chloride addition, and reduction of the generated cation. On the other hand, pyranosides with the distorted conformation were never cleaved in an endocyclic manner.

Co-reporter:Toshiki Nokami Dr.;Akito Shibuya Dr.;Yukishige Ito Dr.;Jun-ichi Yoshida Dr.
Chemistry - A European Journal 2009 Volume 15( Issue 10) pp:2252-2255
Publication Date(Web):
DOI:10.1002/chem.200802293
Co-reporter:Shino Manabe, Akiharu Ueki and Yukishige Ito  
Chemical Communications 2007 (Issue 35) pp:3673-3675
Publication Date(Web):27 Jun 2007
DOI:10.1039/B705324J
Polymer-supported oligosaccharide synthesis was carried out using an ultrafiltration technique in which the synthesized polymer-bound oligosaccharides were separated from the other reagents by ultrafiltration though membranes with specifically sized pores.
Co-reporter:Shino Manabe, Masanori Yamaguchi and Yukishige Ito
Chemical Communications 2013 - vol. 49(Issue 75) pp:NaN8334-8334
Publication Date(Web):2013/07/25
DOI:10.1039/C3CC43968B
The sulfonylcarbamate group is a unique hydroxyl protecting group. In contrast to typical acyl protecting groups, the sulfonylcarbamate group is stable under harsh basic conditions, while showing labile behavior under mild basic conditions. Its compatibility with other hydroxyl protecting groups and application to carbohydrate chemistry is demonstrated.
Co-reporter:Shino Manabe, Yoshiyuki Aihara and Yukishige Ito
Chemical Communications 2011 - vol. 47(Issue 34) pp:NaN9722-9722
Publication Date(Web):2011/07/25
DOI:10.1039/C1CC13172A
Radical-mediated C-glycosylation of pyranosides with the 2,3-trans carbamate group was investigated. C-Glycosylation was achieved with high α-selectivity.
Co-reporter:Shino Manabe, Akiharu Ueki and Yukishige Ito
Chemical Communications 2007(Issue 35) pp:NaN3675-3675
Publication Date(Web):2007/06/27
DOI:10.1039/B705324J
Polymer-supported oligosaccharide synthesis was carried out using an ultrafiltration technique in which the synthesized polymer-bound oligosaccharides were separated from the other reagents by ultrafiltration though membranes with specifically sized pores.
Co-reporter:Hiroko Satoh and Shino Manabe
Chemical Society Reviews 2013 - vol. 42(Issue 10) pp:NaN4309-4309
Publication Date(Web):2013/01/30
DOI:10.1039/C3CS35457A
This tutorial review focuses on the design of glycosyl donors, especially on attempts to control selectivity/reactivity by employing bulky substituents, cyclic protecting groups, or bridged structures. These structural modifications are performed to change the conformational distributions of pyranoside/furanoside rings. We also briefly discuss this issue with regard to studies on furanosides and enzymatic glycosylation reactions. Readers will find that some of the designed glycosyl donors have been used to achieve total syntheses of natural products.
(1S,3R,4R,5S,6S)-4,5-dibenzyloxy-3-(benzyloxymethyl)-2,7-dioxabicyclo[4.1.0]heptane
2-O-acetyl-3,4,6-tri-O-benzyl-α-D-mannopyranosyl chloride
3,4,6-Tri-O-benzyl-beta-D-mannopyranose-1,2-(methyl orthoacetate)