Nora Kulak

Find an error

Name:
Organization: Freie Universit?t Berlin , Germany
Department: Institut für Chemie und Biochemie
Title: Professor(PhD)

TOPICS

Co-reporter:Carsten Lüdtke, Axel Haupt, Martin Wozniak, Nora Kulak
Journal of Fluorine Chemistry 2017 Volume 193() pp:98-105
Publication Date(Web):January 2017
DOI:10.1016/j.jfluchem.2016.11.016
•Fluorinated 1,10-phenanthroline and 2-methyl-1,10-phenanthroline derivatives have been synthesized and characterized.•Skraup and Doebner-von Miller reactions allowed access to ten new derivatives.•One of them had been reported previously as being impossible to synthesize.•F, CF3, SCF3, OCF3 and SF5 were attached at position 5 of the phenanthroline moiety as well as F at positions 5 and 6.A versatile route for the synthesis of new 1,10-phenanthroline derivatives with fluorine-containing groups is described. Skraup reactions were performed with yields of 19 up to 48% and overall yields of 5 up to 13% based on different fluorinated anilines as starting materials. Ten formerly unknown derivatives were synthesized and characterized by NMR spectroscopy (1H, 13C, 19F), ESI mass spectrometry and elemental analysis.
Co-reporter:Chrischani Perera-Bobusch, Jan Hormann, Christoph Weise, Stefanie Wedepohl, Jens Dernedde and Nora Kulak  
Dalton Transactions 2016 vol. 45(Issue 26) pp:10500-10504
Publication Date(Web):01 Jun 2016
DOI:10.1039/C6DT00681G
A simple approach towards efficient artificial proteases based on the cyclen ligand is presented. We thus achieved an increase of the proteolytic activity of two orders of magnitude when compared to the unsubstituted cyclen complex. Amphiphilic Cu(II) and Co(III) complexes cut BSA and myoglobin as model substrates at μM concentrations. MALDI-ToF MS is used to identify the cleavage fragments.
Co-reporter:C. Wende and N. Kulak  
Chemical Communications 2015 vol. 51(Issue 62) pp:12395-12398
Publication Date(Web):22 Jun 2015
DOI:10.1039/C5CC04508H
DNA can be oxidatively cleaved by copper complexes of the ATCUN peptide (amino terminal Cu(II)- and Ni(II)-binding motif). In order to investigate the fate of the metal ion throughout this process, we have exploited quenching/dequenching effects of conjugated fluorophores.
Co-reporter:Jan Hormann;Margarethe van der Meer;Biprajit Sarkar
European Journal of Inorganic Chemistry 2015 Volume 2015( Issue 28) pp:4722-4730
Publication Date(Web):
DOI:10.1002/ejic.201500596

Abstract

Macrocyclic CuII complexes with [NXOY] donor sets of different N/O ratios were synthesised resulting in a series ranging from cyclen (X = 4, Y = 0: 1) to 12-crown-4 (X = 0, Y = 4: 6) complexes. In order to elucidate the structure of the complexes UV/Vis spectroscopy and X-ray crystallography were applied, focusing especially on the literature-unknown compounds with regioisomeric [N2O2] and [NONO] donor sets (3, 4). The complexes were subjected to DNA cleavage experiments under reducing conditions and were also tested in the absence of a reducing agent. Although 3 and 6 were the most active DNA cleavers in the presence of reducing ascorbate, both of them and 4 also cleaved DNA (not hydrolytically) in its absence. This brings up questions regarding the cleavage mechanism. The present study is an expansion of our previously reported finding that heterosubstitution in macrocyclic ligands leads to changes in oxidative DNA cleavage activity of CuII complexes.

Co-reporter:Christian Wende;Carsten Lüdtke
European Journal of Inorganic Chemistry 2014 Volume 2014( Issue 16) pp:2597-2612
Publication Date(Web):
DOI:10.1002/ejic.201400032

Abstract

This microreview summarizes recent research in the field of artificial nucleases, in particular those based on copper(II) in an N-donating ligand environment. This review is divided into three parts describing different ligand classes that have shown promising results in DNA cleavage chemistry: aromatic N-donors, aliphatic N-donors, and peptide ligands. Whereas nature has created very efficient nucleases, artificial nucleases aim at different selectivities and higher stability under various conditions. Artificial nucleases based on metal complexes comprise Lewis acidic or redox-active metal centers allowing for either hydrolytic or oxidative DNA cleavage. The focus of our research and thus also of this microreview is copper, whose CuII ion combines both properties. Depending on the ligand scaffold and reaction conditions, either pathway or even both are thus conceivable. Those different pathways lead to molecular biological and medicinal applications.

Co-reporter:Christian Wende;Carsten Lüdtke
European Journal of Inorganic Chemistry 2014 Volume 2014( Issue 16) pp:
Publication Date(Web):
DOI:10.1002/ejic.201400141

Abstract

Invited for the cover of this issue is the group of Nora Kulak at Freie Universität Berlin. The cover image shows metal complexes capable of cleaving DNA, so-called artificial metallonucleases based on copper as the central atom and comprising N-donor ligands. Heteroaromatic, macrocyclic, and peptidic ligand systems are adumbrated in the background.

Co-reporter:Christian Wende;Carsten Lüdtke
European Journal of Inorganic Chemistry 2014 Volume 2014( Issue 16) pp:
Publication Date(Web):
DOI:10.1002/ejic.201490076
Co-reporter:Jan Hormann, Chrischani Perera, Naina Deibel, Dieter Lentz, Biprajit Sarkar and Nora Kulak  
Dalton Transactions 2013 vol. 42(Issue 13) pp:4357-4360
Publication Date(Web):15 Feb 2013
DOI:10.1039/C3DT32857K
The Cu(II) complexes of cyclen and two of its heterosubstituted analogues were shown to be efficient oxidative DNA cleavers. The reactivity strongly depends on the heteroatom inserted into the macrocycle (O > S > N).
Co-reporter:Sabina Rodríguez-Hermida;Christian Wende;Ana B. Lago;Rosa Carballo;Ezequiel M. Vázquez-López
European Journal of Inorganic Chemistry 2013 Volume 2013( Issue 34) pp:5843-5853
Publication Date(Web):
DOI:10.1002/ejic.201300968

Abstract

The reaction of the ditopic bis(benzoylhydrazone) of isophthalaldehyde (H2L) with copper(II) acetate in methanol under aerobic conditions afforded a green solid that contains the tetranuclear complex [Cu4L*2(OCH3)2] (1). The ligand L*, a bis(benzoylhydrazone) of 2,6-diformylphenol, resulted from hydroxylation of the corresponding isophthalaldehyde derivative. H2L and 1 were characterized by different spectroscopic techniques, and their molecular structures were confirmed by single-crystal X-ray diffraction. The reaction of H2L with copper(II) under argon, on the other hand, resulted in a brown diamagnetic solid [Cu2L]·H2O (2) containing copper(I), which was readily transformed into 1 when exposed to air. In contrast, the reaction with [Cu(CH3CN)4][BF4] afforded a mononuclear complex [Cu(H2L)][BF4]·H2O (3), and single crystals of [Cu(H2L)2][BF4] (4) were isolated from its dichloromethane solution. H2L cleaved plasmid DNA in the presence of copper(II) independently of any reducing agent, but more efficiently when ascorbate was present. The cleavage process is likely oxidative because the enzyme catalase, which decomposes hydrogen peroxide, quenched the reaction. In the absence of ascorbate, the ligand H2L presumably acts as the reductant in the redox reaction, as exploited also in the synthesis of 1. As a consequence, a variety of reactive oxygen species were generated, eventually also leading to the cleavage of DNA (“self-activating” chemical nuclease).

Co-reporter:C. Wende and N. Kulak
Chemical Communications 2015 - vol. 51(Issue 62) pp:NaN12398-12398
Publication Date(Web):2015/06/22
DOI:10.1039/C5CC04508H
DNA can be oxidatively cleaved by copper complexes of the ATCUN peptide (amino terminal Cu(II)- and Ni(II)-binding motif). In order to investigate the fate of the metal ion throughout this process, we have exploited quenching/dequenching effects of conjugated fluorophores.
Co-reporter:Jan Hormann, Chrischani Perera, Naina Deibel, Dieter Lentz, Biprajit Sarkar and Nora Kulak
Dalton Transactions 2013 - vol. 42(Issue 13) pp:NaN4360-4360
Publication Date(Web):2013/02/15
DOI:10.1039/C3DT32857K
The Cu(II) complexes of cyclen and two of its heterosubstituted analogues were shown to be efficient oxidative DNA cleavers. The reactivity strongly depends on the heteroatom inserted into the macrocycle (O > S > N).
Co-reporter:Chrischani Perera-Bobusch, Jan Hormann, Christoph Weise, Stefanie Wedepohl, Jens Dernedde and Nora Kulak
Dalton Transactions 2016 - vol. 45(Issue 26) pp:NaN10504-10504
Publication Date(Web):2016/06/01
DOI:10.1039/C6DT00681G
A simple approach towards efficient artificial proteases based on the cyclen ligand is presented. We thus achieved an increase of the proteolytic activity of two orders of magnitude when compared to the unsubstituted cyclen complex. Amphiphilic Cu(II) and Co(III) complexes cut BSA and myoglobin as model substrates at μM concentrations. MALDI-ToF MS is used to identify the cleavage fragments.
5,6-Difluoro-8-quinolinamine
6-Trifluoromethyl-8-quinolinamine
2-nitro-4-(pentafluoro-λ6-sulfanyl)aniline
5-fluoro-1,10-phenanthroline
1H-Isoindole-1,3(2H)-dione, 2-[2-(2-methoxyethoxy)ethyl]-
2,2'-[(2,3,4,5,6-pentafluorophenyl)methylene]bis-1H-Pyrrole
5-Fluoroquinolin-8-amine
5-Fluoro-8-nitroquinoline
1,4,7,10-Tetraazacyclododecane, 1-dodecyl-