Nicholas A. Melosh

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Name: Melosh, Nicholas
Organization: Stanford University , USA
Department: Department of Materials Science and Engineering
Title: Associate(PhD)

TOPICS

Co-reporter:Yifan Kong, Mina-Elraheb S. Hanna, Denys Zhuo, Katherine G. Chang, Tara Bozorg-Grayeli, and Nicholas A. Melosh
ACS Nano October 24, 2017 Volume 11(Issue 10) pp:9889-9889
Publication Date(Web):September 18, 2017
DOI:10.1021/acsnano.7b03739
Fluidic control and sampling in complex environments is an important process in biotechnology, materials synthesis, and microfluidics. An elegant solution to this problem has evolved in nature through cellular endocytosis, where the dynamic recruitment, self-assembly, and spherical budding of clathrin proteins allows cells to sample their external environment. Yet despite the importance and utility of endocytosis, artificial systems which can replicate this dynamic behavior have not been developed. Guided by clathrin’s unusual structure, we created simplified metallic microparticles that capture the three-legged shape, particle curvature, and interfacial attachment characteristics of clathrin. These artificial clathrin mimics successfully recreate biomimetic analogues of clathrin’s recruitment, assembly, and budding, ultimately forming extended networks at fluid interfaces and invaginating immiscible phases into spheres under external fields. Particle curvature was discovered to be a critical structural motif, greatly limiting irreversible aggregation and inducing the legs’ selective tip-to-tip attraction. This architecture provides a template for a class of active self-assembly units to drive structural and dimensional transformations of liquid–liquid interfaces and microscale fluidic sampling.Keywords: biomimetics; clathrin; colloids; self-assembly; three-dimensional assembly;
Co-reporter:Amin Aalipour, Alexander M. Xu, Sergio Leal-Ortiz, Craig C. Garner, and Nicholas A. Melosh
Langmuir October 21, 2014 Volume 30(Issue 41) pp:12362-12367
Publication Date(Web):October 21, 2014
DOI:10.1021/la502273f
Nanowires are a rapidly emerging platform for manipulation of and material delivery directly into the cell cytosol. These high aspect ratio structures can breach the lipid membrane; however, the yield of penetrant structures is low, and the mechanism is largely unknown. In particular, some nanostructures appear to defeat the membrane transiently, while others can retain long-term access. Here, we examine if local dissolution of the lipid membrane, actin cytoskeleton, or both can enhance nanowire penetration. It is possible that, during cell contact, membrane rupture occurs; however, if the nanostructures do not penetrate the cytoskeleton, the membrane may reclose over a relatively short time frame. We show with quantitative analysis of the number of penetrating nanowires that the lipid bilayer and actin cytoskeleton are synergistic barriers to nanowire cell access, yet chemical poration through both is still insufficient to increase long-term access for adhered cells.
Co-reporter:Yan-Kai TzengJingyuan Linda Zhang, Haiyu Lu, Hitoshi Ishiwata, Jeremy Dahl, Robert M. K. Carlson, Hao Yan, Peter R. Schreiner, Jelena Vučković, Zhi-Xun Shen, Nicholas Melosh, Steven Chu
Nano Letters 2017 Volume 17(Issue 3) pp:
Publication Date(Web):February 9, 2017
DOI:10.1021/acs.nanolett.6b04543
Color center-containing nanodiamonds have many applications in quantum technologies and biology. Diamondoids, molecular-sized diamonds have been used as seeds in chemical vapor deposition (CVD) growth. However, optimizing growth conditions to produce high crystal quality nanodiamonds with color centers requires varying growth conditions that often leads to ad-hoc and time-consuming, one-at-a-time testing of reaction conditions. In order to rapidly explore parameter space, we developed a microwave plasma CVD technique using a vertical, rather than horizontally oriented stage-substrate geometry. With this configuration, temperature, plasma density, and atomic hydrogen density vary continuously along the vertical axis of the substrate. This variation allowed rapid identification of growth parameters that yield single crystal diamonds down to 10 nm in size and 75 nm diameter optically active center silicon-vacancy (Si-V) nanoparticles. Furthermore, this method may provide a means of incorporating a wide variety of dopants in nanodiamonds without ion irradiation damage.Keywords: Cr-related center; MPCVD; nanodiamond; Si-V center; single-crystal diamond;
Co-reporter:Jingyuan Linda Zhang, Hitoshi Ishiwata, Thomas M. Babinec, Marina Radulaski, Kai Müller, Konstantinos G. Lagoudakis, Constantin Dory, Jeremy Dahl, Robert Edgington, Veronique Soulière, Gabriel Ferro, Andrey A. Fokin, Peter R. Schreiner, Zhi-Xun Shen, Nicholas A. Melosh, and Jelena Vučković
Nano Letters 2016 Volume 16(Issue 1) pp:212-217
Publication Date(Web):December 22, 2015
DOI:10.1021/acs.nanolett.5b03515
We demonstrate a new approach for engineering group IV semiconductor-based quantum photonic structures containing negatively charged silicon-vacancy (SiV–) color centers in diamond as quantum emitters. Hybrid diamond-SiC structures are realized by combining the growth of nano- and microdiamonds on silicon carbide (3C or 4H polytype) substrates, with the subsequent use of these diamond crystals as a hard mask for pattern transfer. SiV– color centers are incorporated in diamond during its synthesis from molecular diamond seeds (diamondoids), with no need for ion-implantation or annealing. We show that the same growth technique can be used to grow a diamond layer controllably doped with SiV– on top of a high purity bulk diamond, in which we subsequently fabricate nanopillar arrays containing high quality SiV– centers. Scanning confocal photoluminescence measurements reveal optically active SiV– lines both at room temperature and low temperature (5 K) from all fabricated structures, and, in particular, very narrow line widths and small inhomogeneous broadening of SiV– lines from all-diamond nanopillar arrays, which is a critical requirement for quantum computation. At low temperatures (5 K) we observe in these structures the signature typical of SiV– centers in bulk diamond, consistent with a double lambda. These results indicate that high quality color centers can be incorporated into nanophotonic structures synthetically with properties equivalent to those in bulk diamond, thereby opening opportunities for applications in classical and quantum information processing.
Co-reporter:Alexander M. Xu, Sally A. Kim, Derek S. Wang, Amin Aalipour and Nicholas A. Melosh  
Lab on a Chip 2016 vol. 16(Issue 13) pp:2434-2439
Publication Date(Web):02 Jun 2016
DOI:10.1039/C6LC00463F
Second messengers are biomolecules with the critical role of conveying information to intracellular targets. They are typically membrane-impermeable and only enter cells through tightly regulated transporters. Current methods for manipulating second messengers in cells require preparation of modified cell lines or significant disruptions in cell function, especially at the cell membrane. Here we demonstrate that 100 nm diameter ‘nanostraws’ penetrate the cell membrane to directly modulate second messenger concentrations within cells. Nanostraws are hollow vertical nanowires that provide a fluidic conduit into cells to allow time-resolved delivery of the signaling ion Ca2+ without chemical permeabilization or genetic modification, minimizing cell perturbation. By integrating the nanostraw platform into a microfluidic device, we demonstrate coordinated delivery of Ca2+ ions into hundreds of cells at the time scale of several seconds with the ability to deliver complex signal patterns, such as oscillations over time. The diffusive nature of nanostraw delivery gives the platform unique versatility, opening the possibility for time-resolved delivery of any freely diffusing molecules.
Co-reporter:Xi Xie and Nicholas A. Melosh  
Journal of Materials Chemistry A 2015 vol. 3(Issue 26) pp:5155-5160
Publication Date(Web):11 May 2015
DOI:10.1039/C5TB00452G
Chip-based arrays of vertical nanowires (NWs) have attracted biomedical research interest for their one dimensional architecture and cell-interface properties, yet delivery of these devices in solution is not possible due to the inherent attachment of NWs to a planar substrate. To overcome this structural limitation, we report synthesis of hierarchical nanoparticles covered with stiff NWs, namely “spiky particles” which combine the advantages of supported vertical nanowires and aqueous delivery of suspended nanoparticles. ZnO NWs were grown onto SiO2 nanoparticles using a solution-based synthesis to avoid dispersing particles grown on solid substrates, and increase the particle quantity. These spiky particles can be fabricated with tunable particle and nanowire dimensions. The cell membrane interface with these hierarchical nanostructures were examined using scanning electron microscopy to determine the extent of engulfment and interaction.
Co-reporter:Xi Xie, Amin Aalipour, Sneha V. Gupta, and Nicholas A. Melosh
ACS Nano 2015 Volume 9(Issue 12) pp:11667
Publication Date(Web):November 11, 2015
DOI:10.1021/acsnano.5b05498
Nanowire (NW) arrays offer opportunities for parallel, nondestructive intracellular access for biomolecule delivery, intracellular recording, and sensing. Spontaneous cell membrane penetration by vertical nanowires is essential for these applications, yet the time- and geometry-dependent penetration process is still poorly understood. In this work, the dynamic NW–cell interface during cell spreading was examined through experimental cell penetration measurements combined with two mechanical models based on substrate adhesion force or cell traction forces. Penetration was determined by comparing the induced tension at a series of given membrane configurations to the critical membrane failure tension. The adhesion model predicts that penetration occurs within a finite window shortly after initial cell contact and adhesion, while the traction model predicts increasing penetration over a longer period. NW penetration rates determined from a cobalt ion delivery assay are compared to the predicted results from the two models. In addition, the effects of NW geometry and cell properties are systematically evaluated to identify the key factors for penetration.Keywords: cell adhesion; cell membrane penetration; nanowire array; nanowire delivery; traction force;
Co-reporter:Jules J. VanDersarl, Shafigh Mehraeen, Alia P. Schoen, Sarah C. Heilshorn, Andrew J. Spakowitz and Nicholas A. Melosh  
Soft Matter 2014 vol. 10(Issue 33) pp:6219-6227
Publication Date(Web):11 Jul 2014
DOI:10.1039/C4SM00025K
Clathrin is a three-legged protein complex that assembles into lattice structures on the cell membrane and transforms into fullerene-like cages during endocytosis. This dynamic structural flexibility makes clathrin an attractive building block for guided assembly. The assembly dynamics and the mechanical properties of clathrin protein lattices are studied using rheological measurements and theoretical modelling in an effort to better understand two dynamic processes: protein adsorption to the interface and assembly into a network. We find that percolation models for protein network formation are insufficient to describe clathrin network formation, but with Monte Carlo simulations we can describe the dynamics of network formation very well. Insights from this work can be used to design new bio-inspired nano-assembly systems.
Co-reporter:Amin Aalipour, Alexander M. Xu, Sergio Leal-Ortiz, Craig C. Garner, and Nicholas A. Melosh
Langmuir 2014 Volume 30(Issue 41) pp:12362-12367
Publication Date(Web):2017-2-22
DOI:10.1021/la502273f
Nanowires are a rapidly emerging platform for manipulation of and material delivery directly into the cell cytosol. These high aspect ratio structures can breach the lipid membrane; however, the yield of penetrant structures is low, and the mechanism is largely unknown. In particular, some nanostructures appear to defeat the membrane transiently, while others can retain long-term access. Here, we examine if local dissolution of the lipid membrane, actin cytoskeleton, or both can enhance nanowire penetration. It is possible that, during cell contact, membrane rupture occurs; however, if the nanostructures do not penetrate the cytoskeleton, the membrane may reclose over a relatively short time frame. We show with quantitative analysis of the number of penetrating nanowires that the lipid bilayer and actin cytoskeleton are synergistic barriers to nanowire cell access, yet chemical poration through both is still insufficient to increase long-term access for adhered cells.
Co-reporter:Xi Xie, Alexander M. Xu, Matthew R. Angle, Noureddine Tayebi, Piyush Verma, and Nicholas A. Melosh
Nano Letters 2013 Volume 13(Issue 12) pp:6002-6008
Publication Date(Web):November 15, 2013
DOI:10.1021/nl403201a
Direct access into cells’ interiors is essential for biomolecular delivery, gene transfection, and electrical recordings yet is challenging due to the cell membrane barrier. Recently, molecular delivery using vertical nanowires (NWs) has been demonstrated for introducing biomolecules into a large number of cells in parallel. However, the microscopic understanding of how and when the nanowires penetrate cell membranes is still lacking, and the degree to which actual membrane penetration occurs is controversial. Here we present results from a mechanical continuum model of elastic cell membrane penetration through two mechanisms, namely through “impaling” as cells land onto a bed of nanowires, and through “adhesion-mediated” penetration, which occurs as cells spread on the substrate and generate adhesion force. Our results reveal that penetration is much more effective through the adhesion mechanism, with NW geometry and cell stiffness being critically important. Stiffer cells have higher penetration efficiency, but are more sensitive to NW geometry. These results provide a guide to designing nanowires for applications in cell membrane penetration.
Co-reporter:Karl A. Littau, Kunal Sahasrabuddhe, Dustin Barfield, Hongyuan Yuan, Zhi-Xun Shen, Roger T. Howe and Nicholas A. Melosh  
Physical Chemistry Chemical Physics 2013 vol. 15(Issue 34) pp:14442-14446
Publication Date(Web):16 Jul 2013
DOI:10.1039/C3CP52895B
The efficiency of thermionic energy converters is a strong function of the inter-electrode separation due to space-charge limitations. Here we demonstrate vacuum thermionic energy converters constructed using barium dispenser cathodes and thin film tungsten anodes, separated by size specific alumina microbeads for simple device fabrication and inter-electrode gap control. The current and device efficiency at the maximum power point are strongly dependent on the inter-electrode gap, with a maximum device efficiency of 0.61% observed for a gap on the order of 5 μm. Paths to further reductions in space charge and improved anode work function are outlined with potential for over an order of magnitude improvement in output power and efficiency.
Co-reporter:Xi Xie, Alexander M. Xu, Sergio Leal-Ortiz, Yuhong Cao, Craig C. Garner, and Nicholas A. Melosh
ACS Nano 2013 Volume 7(Issue 5) pp:4351
Publication Date(Web):April 18, 2013
DOI:10.1021/nn400874a
Nondestructive introduction of genes, proteins, and small molecules into mammalian cells with high efficiency is a challenging, yet critical, process. Here we demonstrate a simple nanoelectroporation platform to achieve highly efficient molecular delivery and high transfection yields with excellent uniformity and cell viability. The system is built on alumina nanostraws extending from a track-etched membrane, forming an array of hollow nanowires connected to an underlying microfluidic channel. Cellular engulfment of the nanostraws provides an intimate contact, significantly reducing the necessary electroporation voltage and increasing homogeneity over a large area. Biomolecule delivery is achieved by diffusion through the nanostraws and enhanced by electrophoresis during pulsing. The system was demonstrated to offer excellent spatial, temporal, and dose control for delivery, as well as providing high-yield cotransfection and sequential transfection.Keywords: biointerfaces; drug delivery; electroporation; nanobiotechnology; transfection
Co-reporter:Fei Hua Li, Jason D. Fabbri, Raisa I. Yurchenko, Alexander N. Mileshkin, J. Nathan Hohman, Hao Yan, Hongyuan Yuan, Ich C. Tran, Trevor M. Willey, Michael Bagge-Hansen, Jeremy E. P. Dahl, Robert M. K. Carlson, Andrey A. Fokin, Peter R. Schreiner, Zhi-Xun Shen, and Nicolas A. Melosh
Langmuir 2013 Volume 29(Issue 31) pp:9790-9797
Publication Date(Web):July 15, 2013
DOI:10.1021/la401781e
Diamondoids (nanometer-sized diamond-like hydrocarbons) are a novel class of carbon nanomaterials that exhibit negative electron affinity (NEA) and strong electron–phonon scattering. Surface-bound diamondoid monolayers exhibit monochromatic photoemission, a unique property that makes them ideal electron sources for electron-beam lithography and high-resolution electron microscopy. However, these applications are limited by the stability of the chemical bonding of diamondoids on surfaces. Here we demonstrate the stable covalent attachment of diamantane phosphonic dichloride on tungsten/tungsten oxide surfaces. X-ray photoelectron spectroscopy (XPS) and Fourier-transform infrared (FTIR) spectroscopy revealed that diamondoid-functionalized tungsten oxide films were stable up to 300–350 °C, a substantial improvement over conventional diamondoid thiolate monolayers on gold, which dissociate at 100–200 °C. Extreme ultraviolet (EUV) light stimulated photoemission from these diamondoid phosphonate monolayers exhibited a characteristic monochromatic NEA peak with 0.2 eV full width at half-maximum (fwhm) at room temperature, showing that the unique monochromatization property of diamondoids remained intact after attachment. Our results demonstrate that phosphonic dichloride functionality is a promising approach for forming stable diamondoid monolayers for elevated temperature and high-current applications such as electron emission and coatings in micro/nano electromechanical systems (MEMS/NEMS).
Co-reporter:Jules J. VanDersarl, Alexander M. Xu, and Nicholas A. Melosh
Nano Letters 2012 Volume 12(Issue 8) pp:3881-3886
Publication Date(Web):December 14, 2011
DOI:10.1021/nl204051v
Nanomaterials are promising candidates to improve the delivery efficiency and control of active agents such as DNA or drugs directly into cells. Here we demonstrate cell-culture platforms of nanotemplated “nanostraws” that pierce the cell membrane, providing a permanent fluidic pipeline into the cell for direct cytosolic access. Conventional polymeric track-etch cell culture membranes are alumina coated and etched to produce fields of nanostraws with controllable diameter, thickness, and height. Small molecules and ions were successfully transported into the cytosol with 40 and 70% efficiency, respectively, while GFP plasmids were successfully delivered and expressed. These platforms open the way for active, reproducible delivery of a wide variety of species into cells without endocytosis.
Co-reporter:Benjamin D. Almquist and Nicholas A. Melosh
Nano Letters 2011 Volume 11(Issue 5) pp:2066-2070
Publication Date(Web):April 6, 2011
DOI:10.1021/nl200542m
Nanoscale patterning of hydrophobic bands on otherwise hydrophilic surfaces allows integration of inorganic structures through biological membranes, reminiscent of transmembrane proteins. Here we show that a set of innate molecular properties of the self-assembling hydrophobic band determine the resulting interface stability. Surprisingly, hydrophobicity is found to be a secondary factor with monolayer crystallinity the major determinate of interface strength. These results begin to establish guidelines for seamless bioinorganic integration of nanoscale probes with lipid membranes.
Co-reporter:Fuming Wang and Nicholas A. Melosh
Nano Letters 2011 Volume 11(Issue 12) pp:5426-5430
Publication Date(Web):October 24, 2011
DOI:10.1021/nl203196z
Conversion of light into direct current is important for applications ranging from energy conversion to photodetection, yet often challenging over broad photon frequencies. Here we show a new architecture based on surface plasmon excitation within a metal–insulator–metal device that produces power based on spatial confinement of electron excitation through plasmon absorption. Plasmons excited in the upper metal are absorbed, creating a high concentration of hot electrons which can inject above or tunnel through the thin insulating barrier, producing current. The theoretical power conversion efficiency enhancement achieved can be almost 40 times larger than that of direct illumination while utilizing a broad spectrum of IR to visible wavelengths. Here we present both theoretical estimates of the power conversion efficiency and experimental device measurements, which show clear rectification and power conversion behavior.
Co-reporter:Benjamin D. Almquist, Piyush Verma, Wei Cai and Nicholas A. Melosh  
Nanoscale 2011 vol. 3(Issue 2) pp:391-400
Publication Date(Web):07 Oct 2010
DOI:10.1039/C0NR00486C
The ability to non-destructively integrate inorganic structures into or through biological membranes is essential to realizing full bio-inorganic integration, including arrayed on-chip patch-clamps, drug delivery, and biosensors. Here we explore the role of nanoscale patterning on the strength of biomembrane–inorganic interfaces. AFM measurements show that inorganic probes functionalized with hydrophobic bands with thicknesses complimentary to the hydrophobic lipid bilayer core exhibit strong attachment in the bilayer. As hydrophobic band thickness increases to 2–3 times the bilayer core the interfacial strength decreases, comparable to homogeneously hydrophobic probes. Analytical calculations and molecular dynamics simulations predict a transition between a ‘fused’ interface and a ‘T-junction’ that matches the experimental results, showing lipid disorder and defect formation for thicker bands. These results show that matching biological length scales leads to more intimate bio-inorganic junctions, enabling rational design of non-destructive membrane interfaces.
Co-reporter:Jules J. VanDersarl, Alexander M. Xu and Nicholas A. Melosh  
Lab on a Chip 2011 vol. 11(Issue 18) pp:3057-3063
Publication Date(Web):01 Aug 2011
DOI:10.1039/C1LC20311H
Controlled chemical delivery in microfluidic cell culture devices often relies on slowly evolving diffusive gradients, as the spatial and temporal control provided by fluid flow results in significant cell-perturbation. In this paper we introduce a microfluidic device architecture that allows for rapid spatial and temporal soluble signal delivery over large cell culture areas without fluid flow over the cells. In these devices the cell culture well is divided from a microfluidic channel located directly underneath the chamber by a nanoporous membrane. This configuration requires chemical signals in the microchannel to only diffuse through the thin membrane into large cell culture area, rather than diffuse in from the sides. The spatial chemical pattern within the microfluidic channel was rapidly transferred to the cell culture area with good fidelity through diffusion. The cellular temporal response to a step-function signal showed that dye reached the cell culture surface within 45 s, and achieved a static concentration in under 6 min. Chemical pulses of less than one minute were possible by temporally alternating the signal within the microfluidic channel, enabling rapid flow-free chemical microenvironment control for large cell culture areas.
Co-reporter:Ian Y. Wong, Benjamin D. Almquist, Nicholas A. Melosh
Materials Today 2010 Volume 13(Issue 6) pp:14-22
Publication Date(Web):June 2010
DOI:10.1016/S1369-7021(10)70105-X
The nanoscale dimensions, sensitive electronic control, and flexible architecture of new generations of nanomaterials and nanofabrication techniques hold immense promise not only for electronic devices, but also biological interfaces. As the size scales of these materials approach biological species, interfaces with characteristics designed to emulate their nanoscale biological counterparts are becoming possible. These new systems have higher biocompatibility, functionality, and lower cell toxicity than their microscale predecessors. While stellar examples have been demonstrated for biomolecular detection and imaging, exciting new possibilities for long-term integration and dynamic stimulation are now emerging, including protein activation, membrane integration and intracellular delivery. These tailored interfaces may lead to improved regenerative medicine, gene therapy and neural prosthetics.
Co-reporter:Benjamin D. Almquist
PNAS 2010 107 (13 ) pp:5815-5820
Publication Date(Web):2010-03-30
DOI:10.1073/pnas.0909250107
Many biomaterials are designed to regulate the interactions between artificial and natural surfaces. However, when materials are inserted through the cell membrane itself the interface formed between the interior edge of the membrane and the material surface is not well understood and poorly controlled. Here we demonstrate that by replicating the nanometer-scale hydrophilic-hydrophobic-hydrophilic architecture of transmembrane proteins, artificial “stealth” probes spontaneously insert and anchor within the lipid bilayer core, forming a high-strength interface. These nanometer-scale hydrophobic bands are readily fabricated on metallic probes by functionalizing the exposed sidewall of an ultrathin evaporated Au metal layer rather than by lithography. Penetration and adhesion forces for butanethiol and dodecanethiol functionalized probes were directly measured using atomic force microscopy (AFM) on thick stacks of lipid bilayers to eliminate substrate effects. The penetration dynamics were starkly different for hydrophobic versus hydrophilic probes. Both 5- and 10 nm thick hydrophobically functionalized probes naturally resided within the lipid core, while hydrophilic probes remained in the aqueous region. Surprisingly, the barrier to probe penetration with short butanethiol chains (Eo,5 nm = 21.8kbT, Eo,10 nm = 15.3kbT) was dramatically higher than longer dodecanethiol chains (Eo,5 nm = 14.0kbT, Eo,10 nm = 10.9kbT), indicating that molecular mobility and orientation also play a role in addition to hydrophobicity in determining interface stability. These results highlight a new strategy for designing artificial cell interfaces that can nondestructively penetrate the lipid bilayer.
Co-reporter:Benjamin D. Almquist
PNAS 2010 107 (13 ) pp:5815-5820
Publication Date(Web):2010-03-30
DOI:10.1073/pnas.0909250107
Many biomaterials are designed to regulate the interactions between artificial and natural surfaces. However, when materials are inserted through the cell membrane itself the interface formed between the interior edge of the membrane and the material surface is not well understood and poorly controlled. Here we demonstrate that by replicating the nanometer-scale hydrophilic-hydrophobic-hydrophilic architecture of transmembrane proteins, artificial “stealth” probes spontaneously insert and anchor within the lipid bilayer core, forming a high-strength interface. These nanometer-scale hydrophobic bands are readily fabricated on metallic probes by functionalizing the exposed sidewall of an ultrathin evaporated Au metal layer rather than by lithography. Penetration and adhesion forces for butanethiol and dodecanethiol functionalized probes were directly measured using atomic force microscopy (AFM) on thick stacks of lipid bilayers to eliminate substrate effects. The penetration dynamics were starkly different for hydrophobic versus hydrophilic probes. Both 5- and 10 nm thick hydrophobically functionalized probes naturally resided within the lipid core, while hydrophilic probes remained in the aqueous region. Surprisingly, the barrier to probe penetration with short butanethiol chains (Eo,5 nm = 21.8kbT, Eo,10 nm = 15.3kbT) was dramatically higher than longer dodecanethiol chains (Eo,5 nm = 14.0kbT, Eo,10 nm = 10.9kbT), indicating that molecular mobility and orientation also play a role in addition to hydrophobicity in determining interface stability. These results highlight a new strategy for designing artificial cell interfaces that can nondestructively penetrate the lipid bilayer.
Co-reporter:M. D. Mager and N. A. Melosh
Langmuir 2010 Volume 26(Issue 7) pp:4635-4638
Publication Date(Web):March 5, 2010
DOI:10.1021/la100583f
A new technique is presented to create supported lipid bilayers from whole cell lipids without the use of detergent or solvent extraction. In a modification of the bubble collapse deposition (BCD) technique, an air bubble is created underwater and brought into contact with a population of cells. The high-energy air/water interface extracts the lipid component of the cell membrane, which can subsequently be redeposited as a fluid bilayer on another substrate. The resulting bilayers were characterized with fluorescence microscopy, and it was found that both leaflets of the cell membrane are transferred but the cytoskeleton is not. The resulting supported bilayer was fluid over an area much larger than a single cell, demonstrating the capacity to create large, continuous bilayer samples. This capability to create fluid, biologically relevant bilayers will facilitate the use of high-resolution scanning microscopy techniques in the study of membrane-related processes.
Co-reporter:Ian Y. Wong and Nicholas A. Melosh
Nano Letters 2009 Volume 9(Issue 10) pp:3521-3526
Publication Date(Web):July 16, 2009
DOI:10.1021/nl901710n
Dynamic self-assembly using responsive, “smart” materials such as DNA is a promising route toward reversible assembly and patterning of nanostructures for error-corrected fabrication, enhanced biosensors, drug delivery and gene therapy. DNA linkers were designed with strategically placed mismatches, allowing rapid attachment and release from a surface in a counterion-screened electric field. These electrostatic fields are inherently highly localized, directing assembly with nanometer precision while avoiding harmful electrochemical reactions. We show that depending on the sign of the applied field, the DNA hybridization density is strongly enhanced or diminished due to the high negative charge density of immobilized DNA. This use of dynamic fields rather than static templates enables fabrication of heterogeneously hybridized electrodes with different functional moieties, despite the use of identical linker sequences.
Co-reporter:Michael J. Preiner and Nicholas A. Melosh
Langmuir 2009 Volume 25(Issue 5) pp:2585-2587
Publication Date(Web):February 4, 2009
DOI:10.1021/la804162a
We demonstrate imaging of nanoscale defects in self-assembled monolayers (SAMs). Atomic layer deposition of aluminum oxide (AlOx) onto hydrophobic SAMs is followed by imaging using scanning electron microscopy (SEM). The insulating AlOx selectively deposits onto the exposed substrate at defect sites and becomes charged during imaging, providing high contrast even for nanometer scale defects. The deposited AlOx also acts as a barrier for electron transfer, thereby simultaneously electrically passivating the defects in the SAM as it labels them.
Co-reporter:Morgan D. Mager
Advanced Materials 2008 Volume 20( Issue 23) pp:4423-4427
Publication Date(Web):
DOI:10.1002/adma.200800969
Co-reporter:Morgan D. Mager, Benjamin Almquist and Nicholas A. Melosh
Langmuir 2008 Volume 24(Issue 22) pp:12734-12737
Publication Date(Web):October 22, 2008
DOI:10.1021/la802726u
Fluid lipid bilayers were deposited on alumina substrates with the use of bubble collapse deposition (BCD). Previous studies using vesicle rupture have required the use of charged lipids or surface functionalization to induce bilayer formation on alumina, but these modifications are not necessary with BCD. Photobleaching experiments reveal that the diffusion coefficient of POPC on alumina is 0.6 μm2/s, which is much lower than the 1.4−2.0 μm2/s reported on silica. Systematically accounting for roughness, immobile regions and membrane viscosity shows that pinning sites account for about half of this drop in diffusivity. The remainder of the difference is attributed to a more tightly bound water state on the alumina surface, which induces a larger drag on the bilayer.
Co-reporter:Ian Y. Wong, Matthew J. Footer and Nicholas A. Melosh  
Soft Matter 2007 vol. 3(Issue 3) pp:267-274
Publication Date(Web):18 Sep 2006
DOI:10.1039/B607279H
The development of novel interfaces between electronic devices and biological systems is a rapidly evolving research area that may lead to new insights into biological behavior, clinical diagnostics and therapeutic treatments. Full electrical integration into biological networks will require bioactuators which can translate an electrical pulse into a specific biochemical signal the system can understand. One approach has been the use of electrostatic fields near the surface of an electrode to locally alter the ionic and electrostatic environment within an ionic double layer. In this scheme, normally active biological macromolecules are suspended in a ‘low-salt buffer’ that is depleted of necessary ions, such as Mg2+, rendering them inactive. Upon application of an electrical potential these ions are concentrated at the electrode surface, locally activating biomolecular function. An initial demonstration of this method is presented for the dynamic polymerization of actin filaments from electrode surfaces. In principle, electrodes functionalized with different proteins could be individually activated to translate an electrical potential into a specific biochemical signal or behavior.
Co-reporter:J. D. Fabbri;J. J. Jelincic;K. T. Shimizu;N. A. Melosh
Advanced Materials 2006 Volume 18(Issue 12) pp:1499-1504
Publication Date(Web):10 MAY 2006
DOI:10.1002/adma.200600195

Large-area molecular-electronic devices are fabricated by polymer-assisted soft deposition of the top metal contact in aqueous solution (see figure). A series of monomolecular fatty-acid tunnel junctions and a rotaxane switching junction with working areas from 10 μm2 to 9 mm2 are investigated.

Co-reporter:Matthew R Angle, Bianxiao Cui, Nicholas A Melosh
Current Opinion in Neurobiology (June 2015) Volume 32() pp:132-140
Publication Date(Web):1 June 2015
DOI:10.1016/j.conb.2015.03.014
•Nanofabrication is capable of patterning devices at the same length-scales as cellular components (i.e. 10 s of nanometers).•Nanoscale devices can be used to measure intracellular electrical activity.•The current limitation for these technologies is their ability to form tight seals with the plasma membrane.•The area of nano–bio interactions is being recognized as increasingly important, and as our understanding improves as to the fundamental interactions between nanoscale inorganic devices and cells, the next generation of intracellular tools will undoubtedly become more powerful.Neuroscience would be revolutionized by a technique to measure intracellular electrical potentials that would not disrupt cellular physiology and could be massively parallelized. Though such a technology does not yet exist, the technical hurdles for fabricating minimally disruptive, solid-state electrical probes have arguably been overcome in the field of nanotechnology. Nanoscale devices can be patterned with features on the same length scale as biological components, and several groups have demonstrated that nanoscale electrical probes can measure the transmembrane potential of electrogenic cells. Developing these nascent technologies into robust intracellular recording tools will now require a better understanding of device–cell interactions, especially the membrane–inorganic interface. Here we review the state-of-the art in nanobioelectronics, emphasizing the characterization and design of stable interfaces between nanoscale devices and cells.
Co-reporter:Matthew R. Angle, Andrew Wang, Aman Thomas, Andreas T. Schaefer, Nicholas A. Melosh
Biophysical Journal (4 November 2014) Volume 107(Issue 9) pp:
Publication Date(Web):4 November 2014
DOI:10.1016/j.bpj.2014.09.023
Nanoscale devices have been proposed as tools for measuring and controlling intracellular activity by providing electrical and/or chemical access to the cytosol. Unfortunately, nanostructures with diameters of 50–500 nm do not readily penetrate the cell membrane, and rationally optimizing nanoprobes for cell penetration requires real-time characterization methods that are capable of following the process of membrane penetration with nanometer resolution. Although extensive work has examined the rupture of supported synthetic lipid bilayers, little is known about the applicability of these model systems to living cell membranes with complex lipid compositions, cytoskeletal attachment, and membrane proteins. Here, we describe atomic force microscopy (AFM) membrane penetration experiments in two parallel systems: live HEK293 cells and stacks of synthetic lipid bilayers. By using the same probes in both systems, we were able to clearly identify membrane penetration in synthetic bilayers and compare these events with putative membrane penetration events in cells. We examined membrane penetration forces for three tip geometries and 18 chemical modifications of the probe surface, and in all cases the median forces required to penetrate cellular and synthetic lipid bilayers with nanoprobes were greater than 1 nN. The penetration force was sensitive to the probe's sharpness, but not its surface chemistry, and the force did not depend on cell surface or cytoskeletal properties, with cells and lipid stacks yielding similar forces. This systematic assessment of penetration under various mechanical and chemical conditions provides insights into nanoprobe-cell interactions and informs the design of future intracellular nanoprobes.
Co-reporter:Ian Y. Wong, Nicholas A. Melosh
Biophysical Journal (16 June 2010) Volume 98(Issue 12) pp:
Publication Date(Web):16 June 2010
DOI:10.1016/j.bpj.2010.03.017
DNA hybridization at surfaces is a crucial process for biomolecular detection, genotyping, and gene expression analysis. However, hybridization density and kinetics can be strongly inhibited by electric fields from the negatively charged DNA as the reaction proceeds. Here, we develop an electrostatic model to optimize hybridization density and kinetics as a function of DNA surface density, salt concentrations, and applied voltages. The electrostatic repulsion from a DNA surface layer is calculated numerically and incorporated into a modified Langmuir scheme, allowing kinetic suppression of hybridization. At the low DNA probe densities typically used in assays (<1013/cm2), electrostatics effects are largely screened and hybridization is completed with fast kinetics. However, higher hybridization densities can be achieved at intermediate DNA surface densities, albeit with slower kinetics. The application of positive voltages circumvents issues resulting from the very high DNA probe density, allowing highly enhanced hybridization densities and accelerated kinetics, and validating recent experimental measurements.
Co-reporter:Karl A. Littau, Kunal Sahasrabuddhe, Dustin Barfield, Hongyuan Yuan, Zhi-Xun Shen, Roger T. Howe and Nicholas A. Melosh
Physical Chemistry Chemical Physics 2013 - vol. 15(Issue 34) pp:NaN14446-14446
Publication Date(Web):2013/07/16
DOI:10.1039/C3CP52895B
The efficiency of thermionic energy converters is a strong function of the inter-electrode separation due to space-charge limitations. Here we demonstrate vacuum thermionic energy converters constructed using barium dispenser cathodes and thin film tungsten anodes, separated by size specific alumina microbeads for simple device fabrication and inter-electrode gap control. The current and device efficiency at the maximum power point are strongly dependent on the inter-electrode gap, with a maximum device efficiency of 0.61% observed for a gap on the order of 5 μm. Paths to further reductions in space charge and improved anode work function are outlined with potential for over an order of magnitude improvement in output power and efficiency.
Co-reporter:Xi Xie and Nicholas A. Melosh
Journal of Materials Chemistry A 2015 - vol. 3(Issue 26) pp:NaN5160-5160
Publication Date(Web):2015/05/11
DOI:10.1039/C5TB00452G
Chip-based arrays of vertical nanowires (NWs) have attracted biomedical research interest for their one dimensional architecture and cell-interface properties, yet delivery of these devices in solution is not possible due to the inherent attachment of NWs to a planar substrate. To overcome this structural limitation, we report synthesis of hierarchical nanoparticles covered with stiff NWs, namely “spiky particles” which combine the advantages of supported vertical nanowires and aqueous delivery of suspended nanoparticles. ZnO NWs were grown onto SiO2 nanoparticles using a solution-based synthesis to avoid dispersing particles grown on solid substrates, and increase the particle quantity. These spiky particles can be fabricated with tunable particle and nanowire dimensions. The cell membrane interface with these hierarchical nanostructures were examined using scanning electron microscopy to determine the extent of engulfment and interaction.
16-sulfanylhexadecanoic Acid
Adamantane-1-thiol
Poly[imino[(1R)-1-(4-aminobutyl)-2-oxo-1,2-ethanediyl]]
SYBR(R) GREEN I NUCLEIC ACID GEL STAIN
Dapiprazole
Ethidium homodimer
OCTADEC-9-ENE-1-THIOL