Co-reporter:Haiying Gan and Bruce C. Gibb
Chemical Communications 2012 vol. 48(Issue 11) pp:1656-1658
Publication Date(Web):21 Dec 2011
DOI:10.1039/C2CC16603H
The extent of self-sorting in systems comprised of two different deep-cavity cavitands is investigated. The nature of the guest(s) encapsulated in the resulting assemblies is shown to profoundly influence the extent of self-sorting.
Co-reporter:Haiying Gan ; Christopher J. Benjamin ;Bruce C. Gibb
Journal of the American Chemical Society 2011 Volume 133(Issue 13) pp:4770-4773
Publication Date(Web):March 14, 2011
DOI:10.1021/ja200633d
The synthesis and assembly properties of a new water-soluble deep-cavity cavitand are discussed. For a homologous series of alkanes, the host can form a range of approximately isoenergetic 1:1, 2:1, and 2:2 complexes. As a result of this ‘confluence’ of binding and assembly the host displays an unusual, nonmonotonic, assembly profile. Thus, no or limited assembly is observed with methane through butane, pentane triggers assembly, and hexane through octane again does not promote assembly, whereas nonane and a larger guest again induce assembly. This unusual behavior is discussed in the context of the diversity of nodes of chemical systems (networks).
Co-reporter:Simin Liu and Bruce C. Gibb
Chemical Communications 2011 vol. 47(Issue 12) pp:3574-3576
Publication Date(Web):15 Feb 2011
DOI:10.1039/C1CC10122F
The organic co-solvent induced denaturation of a series of capsular complexes formed between trioxolane guests and a water-soluble deep-cavity cavitand was examined. The results obtained demonstrate a wide range of denaturation properties, and suggest the important factors governing capsule stability.
Co-reporter:Bruce C. Gibb
Israel Journal of Chemistry 2011 Volume 51( Issue 7) pp:798-806
Publication Date(Web):
DOI:10.1002/ijch.201100058
Abstract
The self-assembly of structurally discrete entities, and supramolecular chemistry in general, continues to expand into the aqueous realm. To do so, however, requires a firm understanding of the properties of aqueous solution, and how these “change the rules” for binding and assembly relative to organic solvents. In this mini-review we highlight the state-of-the-art understanding of the supramolecular properties of water, and how these influence the design of hosts and self-assembling systems.
Co-reporter:Corinne L.D. Gibb, Bruce C. Gibb
Tetrahedron 2009 65(35) pp: 7240-7248
Publication Date(Web):
DOI:10.1016/j.tet.2009.01.106
Co-reporter:Kannupal Srinivasan and Bruce C. Gibb
Chemical Communications 2008 (Issue 38) pp:4640-4642
Publication Date(Web):27 Aug 2008
DOI:10.1039/B811594J
Deep-cavity cavitands were shown to undergo carceplex reactions in which two cavitand tetrols were covalently linked using bromochloromethane; the efficiency of the “dimerization” was closely tied to the templating guest molecule incarcerated within the host.
Co-reporter:Simin Liu and Bruce C. Gibb
Chemical Communications 2008 (Issue 32) pp:3709-3716
Publication Date(Web):06 Jun 2008
DOI:10.1039/B805446K
High definition self-assemblies, those that possess order at the molecular level, are most commonly made from subunits possessing metals and metal coordination sites, or groups capable of partaking in hydrogen bonding. In other words, enthalpy is the driving force behind the free energy of assembly. The hydrophobic effect engenders the possibility of (nominally) relying not on enthalpy but entropy to drive assembly. Towards this idea, we describe how template molecules can trigger the dimerization of a cavitand in aqueous solution, and in doing so are encapsulated within the resulting capsule. Although not held together by (enthalpically) strong and directional non-covalent forces, these capsules possess considerable thermodynamic and kinetic stability. As a result, they display unusual and even unique properties. We discuss some of these, including the use of the capsule as a nanoscale reaction chamber and how they can bring about the separation of hydrocarbon gases.
Co-reporter:Kannupal Srinivasan;Zachary R. Laughrey;Bruce C. Gibb
European Journal of Organic Chemistry 2008 Volume 2008( Issue 19) pp:3265-3271
Publication Date(Web):
DOI:10.1002/ejoc.200800206
Abstract
The endo- and exo-rim positions of deep-cavity cavitand 1 were functionalized by directed ortho metalation (DoM) procedures. A range of electrophilic quenchers led to hosts with ester, phenol and thioether functionality. In each case, a combination of host pre-organization and reaction control resulted in far fewer products than the theoretical sixty-nine. In addition to the nature of the lithiate, functionalization patterns were also dependent on the electrophile, with a general trend that the non-carbon electrophiles examined gave higher degrees of substitution. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2008)
Co-reporter:Kannupal Srinivasan;Zachary R. Laughrey;Bruce C. Gibb
European Journal of Organic Chemistry 2008 Volume 2008( Issue 19) pp:
Publication Date(Web):
DOI:10.1002/ejoc.200890048
Abstract
The cover picture shows a collection of china, pewter cups, mugs, and jugs. For these and other macroscale objects, it is easier to decorate their exterior rather than their interior surface. Not surprisingly, the same asymmetry is seen at the molecular scale; it is generally easier to decorate/functionalize a convex than a concave surface. One approach to endo functionalization of deep-cavity cavitands is directed ortho metalation (DoM). In the paper by Srinivasan et al., on p. 3265 ff, it is shown that various electrophiles quench the lithiates formed according to DoM protocols. Reaction control leads to between one and five functional groups being introduced at the endo and exo positions of these hosts.
Co-reporter:Corinne L. D. Gibb and Bruce C. Gibb
Chemical Communications 2007 (Issue 16) pp:1635-1637
Publication Date(Web):06 Feb 2007
DOI:10.1039/B618731E
Cavitand 1 is sufficiently predisposed to form nano-scale capsules in the presence of templating straight-chain hydrocarbons; quaternary complexes are formed when two copies of smaller guests are encapsulated, whilst larger guests form ternary entities.
Co-reporter:Lakshmi S. Kaanumalle, Corinne L. D. Gibb, Bruce C. Gibb and V. Ramamurthy
Organic & Biomolecular Chemistry 2007 vol. 5(Issue 2) pp:236-238
Publication Date(Web):29 Nov 2006
DOI:10.1039/B617022F
The water soluble capsule formed by a deep cavity cavitand with eight carboxylic acid groups controls product distribution during photo-Fries rearrangement of naphthyl esters in water by restricting the mobility of primary singletradical pair.
Co-reporter:Zachary R. Laughrey, Thomas G. Upton and Bruce C. Gibb
Chemical Communications 2006 (Issue 9) pp:970-972
Publication Date(Web):20 Jan 2006
DOI:10.1039/B515187B
A deuterated cavitand host was examined for its affinity to a series of guests; for halogenated, preorganized guests binding was significantly stronger than the corresponding protium host.
Co-reporter:Jiachang Gong and Bruce C. Gibb
Chemical Communications 2005 (Issue 26) pp:3319-3321
Publication Date(Web):27 May 2005
DOI:10.1039/B501774B
A pair of enantioselective, ditopic macrocycles is described; the receptors bind chiral ammonium cations in a manner that depends on the stereochemistry of the cation as well as the nature of its counter anion.
Co-reporter:Jiachang Gong and Bruce C. Gibb
Chemical Communications 2005 (Issue 11) pp:1393-1395
Publication Date(Web):26 Jan 2005
DOI:10.1039/B414923H
The synthesis and binding properties of a new macrocycle is reported. The host, comprised of three basic pyridines, four hydrogen bond accepting carbonyls, and two hydrogen bond donating amide groups, binds mono-alkyl ammonium salts in a manner that is dependent on the counter-ion of the ammonium guest.
Co-reporter:Bruce C. Gibb Dr.
Chemistry - A European Journal 2003 Volume 9(Issue 21) pp:
Publication Date(Web):10 OCT 2003
DOI:10.1002/chem.200305029
Metal ions are superb at templating the synthesis of small macrocycles that are decorated with Lewis basic sites. However, for the synthesis of larger macrocycles, or the synthesis of macrocycles devoid of an array of Lewis basic sites, metal ions are less useful. Here we demonstrate that resorcinarenes can be used as templates to engender the efficient formation of large crown ethers. A three step process of 1) tethering moieties to the template, 2) linking those moieties, and 3) then cleaving off the template leads to the efficient formation of a family of aromatic crown ethers. If adaptable, this approach will prove useful for the construction of macrocycles that are hard to obtain from a step-wise synthesis.
Co-reporter:Zachary R. Laughrey;Corinne L. D. Gibb;Tangi Senechal;Bruce C. Gibb
Chemistry - A European Journal 2003 Volume 9(Issue 1) pp:
Publication Date(Web):30 DEC 2002
DOI:10.1002/chem.200390008
The synthesis of three different nanoscale molecular hosts is reported. These cavitands each possess a highly preorganized cavity with an open portal (nearly 1 nm wide), by which guests can enter and egress the cavity. Additionally, these hosts are deep-functionalized with a crown of weakly acidic benzal CH groups which can form a variety of noncovalent interactions with guest molecules residing within the cavity. Thirty-one guests were examined for their propensity to form complexes with the hosts. Guests that possess halogen atoms were the strongest binders, suggesting the formation of polydentate CH⋅⋅⋅XR hydrogen bonds with the deep crown of benzal hydrogens. Exchange rates between the free and bound states were noted to be dependent on the size of the guest and the solvent used to study complexation. In general, stronger binding and slower exchange were noted for complexations carried out in DMSO with highly complementary guests. The orientation of each guest within the cavity was determined using either EXSY NMR spectroscopy or 1H NMR shift data. Cumulatively these results showed that the principal factors directing orientation were interactions with the benzal groups and the type of solvent. Van't Hoff analyses of selected complexations were also carried out. As well as revealing that all complexations were entropically unfavorable, these experiments provided support for guest orientation determinations, and gave an estimation that the formation of a CH⋅⋅⋅IR hydrogen bond releases between 1 and 1.5 kcal mol−1.
Co-reporter:Bruce C. Gibb
Angewandte Chemie 2003 Volume 115(Issue 15) pp:
Publication Date(Web):16 APR 2003
DOI:10.1002/ange.200201547
Zauber des Kristalls: Ein kürzlich beschriebenes Calix[4]aren, das eine annähernd hexagonal dichteste Packung aus quasi-kugelförmigen Trimeren sowohl in Gegenwart als auch in Abwesenheit von Gastmolekülen bildet (siehe Struktur im Kristall), schlägt eine Brücke zwischen Kristallen, die sich beim Entfernen des Gastes zersetzen, und solchen, deren Gäste nicht entfernbar sind.
Co-reporter:Bruce C. Gibb
Angewandte Chemie International Edition 2003 Volume 42(Issue 15) pp:
Publication Date(Web):16 APR 2003
DOI:10.1002/anie.200201547
The beauty of crystals: A bridge between crystals that degrade when their guests are removed and crystalline solids that refuse to release their guests has been provided by Atwood et al. with the report of a calix[4]arene that forms an approximate hexagonal close-packed array of quasi-spherical trimers in the presence and absence of guest molecules (see X-ray crystal structure).
Co-reporter:C. L. D. Gibb;X. Li;B. C. Gibb
PNAS 2002 Volume 99 (Issue 8 ) pp:4857-4862
Publication Date(Web):2002-04-16
DOI:10.1073/pnas.062653599
Kinetic analysis of the host guest complexation of a large, open molecular basket and a highly complementary adamantoid guest
reveals that for these types of systems a dissociative mechanism is in operation. Hence, the resident adamantyl guest must
completely vacate the cavity before another guest molecule can move in to replace it. As a result of the rigid nature of the
host, the energy barrier to this process is relatively high, about 16 kcal mol−1 at room temperature. Modifying the cavity of the host by dangling either a methyl group or a hydroxyl group from the portal
rim alters the thermodynamic binding profile of these hosts. 1H NMR shift data analysis also reveals that these functional groups can adjust the orientation that monosubstituted guests
adopt within the cavity. Additionally, 1H NMR studies of the binding of (E)1,4-dibromoadamantane allow the observation of two energetically similar diastereomeric complexes. An examination of this
guest binding to the three hosts reveals that the interchange between the isomers is much faster than the entry and egression
rates, and that the functional groups at the rim of each cavity influence both the rates of reorientation and the equilibrium
relating the isomers.
Co-reporter:Bruce C Gibb
Journal of Supramolecular Chemistry 2002 Volume 2(1–3) pp:123-131
Publication Date(Web):January–June 2002
DOI:10.1016/S1472-7862(02)00088-6
Supramolecular stereochemistry, the stereochemistry between molecules, is not a new phenomenon. However, it has taken both the skill and perception of supramolecular chemists to bring the topic to the fore. How do we describe the spatial relationships between molecules? This essay pulls together examples from Nature and the laboratory to try and answer this question.Supramolecular stereochemistry, the stereochemistry between molecules, is not a new phenomenon. However, it has taken both the skill and perception of supramolecular chemists to bring the topic to the fore. How do we describe the spatial relationships between molecules? This essay pulls together examples from Nature and the laboratory to try and answer this question.
Co-reporter:Corinne L.D Gibb, Bruce C Gibb
Journal of Supramolecular Chemistry 2001 Volume 1(Issue 1) pp:39-52
Publication Date(Web):January–February 2001
DOI:10.1016/S1472-7862(01)00003-X
An approach to the semi-quantification of self-assembly processes that lead to descrete molecular and supramolecular entities is presented. A number of reversible and irreversible assemblies from the literature illustrate how this probabilistic approach can be used to: 1) Compare disparate assembly systems; 2) define what processes can and cannot be described as self-assembling.
Co-reporter:Corinne L. D. Gibb, Edwin D. Stevens and Bruce C. Gibb
Chemical Communications 2000 (Issue 5) pp:363-364
Publication Date(Web):21 Feb 2000
DOI:10.1039/A908144E
In the absence of an apparent (single) molecular template, the
irreversible self-assembly of benzyl alcohol substituted, deep-cavity
cavitands is shown to be a highly efficient process.
Co-reporter:Corinne L. D. Gibb ;Bruce C. Gibb
Journal of the American Chemical Society () pp:
Publication Date(Web):April 27, 2011
DOI:10.1021/ja202308n
For over 120 years it has been appreciated that certain salts (kosmotropes) cause the precipitation of proteins, while others (chaotropes) increase their solubility. The cause of this “Hofmeister effect” is still unclear, especially with the original concept that kosmotropic anions “make” water structure and chaotropes “break” it being countered by recent studies suggesting otherwise. Here, we present the first direct evidence that chaotropic anions have an affinity for hydrophobic concavity and that it is competition between a convex hydrophobe and the anion for a binding site that leads to the apparent weakening of the hydrophobic effect by chaotropes. In combination, these results suggest that chaotropes primarily induce protein solubilization by direct binding to concavity in the molten globule state of a protein.
Co-reporter:Corinne L. D. Gibb and Bruce C. Gibb
Chemical Communications 2007(Issue 16) pp:NaN1637-1637
Publication Date(Web):2007/02/06
DOI:10.1039/B618731E
Cavitand 1 is sufficiently predisposed to form nano-scale capsules in the presence of templating straight-chain hydrocarbons; quaternary complexes are formed when two copies of smaller guests are encapsulated, whilst larger guests form ternary entities.
Co-reporter:Simin Liu and Bruce C. Gibb
Chemical Communications 2008(Issue 32) pp:NaN3716-3716
Publication Date(Web):2008/06/06
DOI:10.1039/B805446K
High definition self-assemblies, those that possess order at the molecular level, are most commonly made from subunits possessing metals and metal coordination sites, or groups capable of partaking in hydrogen bonding. In other words, enthalpy is the driving force behind the free energy of assembly. The hydrophobic effect engenders the possibility of (nominally) relying not on enthalpy but entropy to drive assembly. Towards this idea, we describe how template molecules can trigger the dimerization of a cavitand in aqueous solution, and in doing so are encapsulated within the resulting capsule. Although not held together by (enthalpically) strong and directional non-covalent forces, these capsules possess considerable thermodynamic and kinetic stability. As a result, they display unusual and even unique properties. We discuss some of these, including the use of the capsule as a nanoscale reaction chamber and how they can bring about the separation of hydrocarbon gases.
Co-reporter:Kannupal Srinivasan and Bruce C. Gibb
Chemical Communications 2008(Issue 38) pp:
Publication Date(Web):
DOI:10.1039/B811594J
Co-reporter:Haiying Gan and Bruce C. Gibb
Chemical Communications 2012 - vol. 48(Issue 11) pp:NaN1658-1658
Publication Date(Web):2011/12/21
DOI:10.1039/C2CC16603H
The extent of self-sorting in systems comprised of two different deep-cavity cavitands is investigated. The nature of the guest(s) encapsulated in the resulting assemblies is shown to profoundly influence the extent of self-sorting.
Co-reporter:Lakshmi S. Kaanumalle, Corinne L. D. Gibb, Bruce C. Gibb and V. Ramamurthy
Organic & Biomolecular Chemistry 2007 - vol. 5(Issue 2) pp:NaN238-238
Publication Date(Web):2006/11/29
DOI:10.1039/B617022F
The water soluble capsule formed by a deep cavity cavitand with eight carboxylic acid groups controls product distribution during photo-Fries rearrangement of naphthyl esters in water by restricting the mobility of primary singletradical pair.
Co-reporter:Simin Liu and Bruce C. Gibb
Chemical Communications 2011 - vol. 47(Issue 12) pp:NaN3576-3576
Publication Date(Web):2011/02/15
DOI:10.1039/C1CC10122F
The organic co-solvent induced denaturation of a series of capsular complexes formed between trioxolane guests and a water-soluble deep-cavity cavitand was examined. The results obtained demonstrate a wide range of denaturation properties, and suggest the important factors governing capsule stability.