David C. Baker

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Name: Baker, David C.
Organization: The University of Tennessee , USA
Department: Department of Chemistry
Title: (PhD)

TOPICS

Co-reporter:Bo Meng, Zhenqian Zhu and David C. Baker  
Organic & Biomolecular Chemistry 2014 vol. 12(Issue 28) pp:5182-5191
Publication Date(Web):03 Jun 2014
DOI:10.1039/C4OB00626G
A 1,2-cis-alkyl glycosidation protocol that makes use of unprotected phenyl 1-thioglycosyl donors is reported. Glycosylation of various functionalized alcohols was accomplished in moderate to high yield and selectivity to give the 1,2-cis-glycosides. In order to quickly develop optimum glycosylation conditions, an FIA (flow injection analysis)–ESI-TOF-MS method was developed that enabled rapid and quantitative evaluation of yield on small scale. This methodology, coupled with NMR spectroscopy, allowed for rapid evaluation of the overall reactions.
Co-reporter:Wenli Gao, Scott Bussom, Susan P. Grill, Elizabeth A. Gullen, You-Cai Hu, Xueshi Huang, Sanbao Zhong, Conrad Kaczmarek, Julio Gutierrez, Samson Francis, David C. Baker, Shishan Yu, Yung-Chi Cheng
Bioorganic & Medicinal Chemistry Letters 2007 Volume 17(Issue 15) pp:4338-4342
Publication Date(Web):1 August 2007
DOI:10.1016/j.bmcl.2007.05.021
Five phenanthroindolizidine alkaloids (PA) were chemically synthesized and seven were isolated from Tylophora atrofolliculata. To facilitate future drug design of phenanthroindolizidine alkaloids as potential antitumor agents, we have explored the structure–activity relationships (SAR) of this class of compounds. We demonstrated that DCB-3503 and tylophorinidine (PA-7) were among the most active compounds against tumor growth both in vitro and in vivo. In the hepatocellular carcinoma cell line HepG2, the GI50s of DCB-3503 and PA-7 were 35 ± 5 nM and 11 ± 5 nM, respectively. DCB-3503 and PA-7 significantly inhibited HepG2 tumor growth in nude mice at a dose of 9 mg/kg given by intraperitoneal (ip) injections twice a day every third day for a total of four cycles (P < 0.05 for DCB-3503 and P < 0.01 for PA-7). Their potent antitumor activities correlated with their potent NF-κB-inhibitory effects and their cyclin D1 down-regulatory effects.Structure–activity relationships were explored based on a series of phenanthroindolizidine alkaloids synthesized or isolated. DCB-3503 and PA-7 (tylophorinidine) were determined to be the most active compounds against HepG2 tumor growth both in vitro and in vivo.
Co-reporter:David J.A. Schedler, David C. Baker
Carbohydrate Research 2004 Volume 339(Issue 9) pp:1585-1595
Publication Date(Web):22 June 2004
DOI:10.1016/j.carres.2004.03.030
A number of deoxyfluoro cyclitols have been synthesized and evaluated as probes of the phosphatidylinositol pathway (PtdIns pathway), most notably 5-deoxy-5-fluoro-myo-inositol, which is incorporated into the pathway at about 25% the level of myo-inositol itself. Unfortunately, none of the cyclitols have proved effective in limiting cell proliferation, as the cells are able to `synthesize around' the fraudulent cyclitols using natural myo-inositol as substrate. Inhibitors for 3-phosphatidylinositol kinase, which has importance in a number of pathological conditions, including cancer, have been intensively investigated. 3-Deoxy-3-fluoro-myo-inositol is incorporated into the PtdIns pathway; however, only related phosphatidyl derivatives, for example, a methyl ether derivative of the 3-deoxy inositol, showed significant antiproliferative activity. Synthesis of the deoxyfluoro analogues most often has been accomplished by DAST fluoro-de-hydroxylation of the appropriate cyclitol, generally leading to products of inversion.Graphic
Co-reporter:Anand Mayasundari, William G. Rice, Jonathan B. Diminnie, David C. Baker
Bioorganic & Medicinal Chemistry 2003 Volume 11(Issue 14) pp:3215-3219
Publication Date(Web):17 July 2003
DOI:10.1016/S0968-0896(03)00269-4
The anti-HIV activity of (±)-cis-4,5-dihydroxy-1,2-dithiane 1,1-dioxide [(±)-cis-1,1-dioxo-[1,2]-dithiane-4,5-diol, NSC-624151] and its attack on the zinc finger domain of the HIV-1 nucleocapsid p7 (NCp7) protein has been established [Rice, W. G.; Baker, D. C.; Schaeffer, C. A.; Graham, L.; Bu, M.; Terpening, S.; Clanton, D.; Schultz, R.; Bader, J. P.; Buckheit, R. W.; Field, L.; Singh, P. K. Turpin, J. A. Antimicrob. Agents Chemother.1997, 41, 419]. In order to determine which enantiomer of NSC-624151 is the more active component, the compound was resolved via its bis-‘Mosher ester’, which was prepared via its reaction with two equiv of (−)-(R)-α-methoxy-α-(trifluoromethyl)phenylacetyl chloride. The diastereoisomeric esters were separated, and each ester was hydrolyzed to yield enantiomers with +151° (c 0.5, MeOH) and −146° (c 0.5, MeOH). Single-crystal X-ray analysis of the (−)-bis-‘Mosher ester’ showed that the (−)-enantiomer is the (4S, 5R)-compound. The (−)-enantiomer (NSC 693195) was ca. twice as active (EC50 8.8±0.2 μM) as its (+)-counterpart (NSC 693194) (EC50 16.2±2.4 μM) in the XTT assay against HIV-1. All three compounds were found to be approximately equally effective in promoting Zn ejection from the NCp7 zinc finger. As the more anti-HIV active enantiomer is only slightly more active than the racemic form, it appears to offer no advantages over the racemic form.The more bioactive enantiomer:
Co-reporter:Elena G. Gakh;Donald K. Dougall
Phytochemical Analysis 1998 Volume 9(Issue 1) pp:28-34
Publication Date(Web):4 DEC 1998
DOI:10.1002/(SICI)1099-1565(199801/02)9:1<28::AID-PCA380>3.0.CO;2-V

Inter- and intra-molecular interactions of five anthocyanins (one non-acylated and four acylated with either sinapic acid or 4-methylated sinapic acid) obtained from cell culture of the wild carrot (Daucus carotassp. carota) have been studied by one- and two-dimensional proton nuclear magnetic resonance (NMR) spectroscopy. Temperature and concentration dependencies of proton chemical shifts show that self-association of non-acylated anthocyanins depends upon the number and position of the sugar units. It was found for the first time that there were non-acylated anthocyanins that were not protected by self-association. Both intra- and inter-molecular interactions were found in the acylated anthocyanins under study. These compounds form strong intra-molecular π-complexes between the sinapoyl group and the anthocyanidin nucleus, the double bond of sinapic acid being involved as well as its aromatic ring. Upon increasing the concentration of the anthocyanins or lowering the temperature of the NMR sample, the π-complexes form multinuclear complexes as shown by the resultant negative nuclear Overhauser effect (NOE) values. Spin diffusion was observed in the acylated anthocyanins for temperatures below −40°C. It was also concluded that, because anthocyanins fall in the range of medium-size molecules with NOEs of small magnitude, and because they readily form complexes, two-dimensional NOE experiments are more reliable for structural elucidation of the anthocyanins than are one-dimensional steady-state NOE experiments. © 1998 John Wiley & Sons, Ltd.

Co-reporter:Bo Meng, Zhenqian Zhu and David C. Baker
Organic & Biomolecular Chemistry 2014 - vol. 12(Issue 28) pp:NaN5191-5191
Publication Date(Web):2014/06/03
DOI:10.1039/C4OB00626G
A 1,2-cis-alkyl glycosidation protocol that makes use of unprotected phenyl 1-thioglycosyl donors is reported. Glycosylation of various functionalized alcohols was accomplished in moderate to high yield and selectivity to give the 1,2-cis-glycosides. In order to quickly develop optimum glycosylation conditions, an FIA (flow injection analysis)–ESI-TOF-MS method was developed that enabled rapid and quantitative evaluation of yield on small scale. This methodology, coupled with NMR spectroscopy, allowed for rapid evaluation of the overall reactions.
Propargyl α-D-Galactopyranoside
α-D-Mannopyranoside, 2-propyn-1-yl
2-Propenoic acid, 3-[4-(acetyloxy)-3-methoxyphenyl]-, ethyl ester, (2E)-
α-D-lyxo-Hexopyranoside, 2-propyn-1-yl 2-deoxy-, 3,4,6-triacetate
Isoquinoline, 1,2,3,4-tetrahydro-6,7-dimethoxy-1-(1-methylethyl)-, (1R)-
N/A
N/A
1,2-Dithiane-4,5-diol, 1,1-dioxide, (4S,5R)-