Wei Xu

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Name: Xu, Wei; 许维
Organization: Tongji University , China
Department: College ofMaterials Science and Engineering
Title: Professor(PhD)

TOPICS

Co-reporter:Lei Xie;Chi Zhang;Yuanqi Ding;Wenlong E;Chunxue Yuan
Chemical Communications 2017 vol. 53(Issue 62) pp:8767-8769
Publication Date(Web):2017/08/01
DOI:10.1039/C7CC04446A
From the combination of STM imaging and DFT calculations, we show that both alkali metal and halogens interact with different sites of the target molecules resulting in structural formation in a synergistic way. The elementary metal–organic motifs are connected by Cl in a variety of fashions demonstrating structural diversity.
Co-reporter:Yuanqi Ding;Lei Xie;Chi Zhang
Chemical Communications 2017 vol. 53(Issue 71) pp:9846-9849
Publication Date(Web):2017/08/31
DOI:10.1039/C7CC05548J
From the interplay of high-resolution scanning tunneling microscopy (STM) imaging and density functional theory (DFT) calculations, we show the first real-space evidence of the formation of GCGC tetrad on an Au(111) surface, and further investigate its competition with the well-known G-quartet with the aid of NaCl under ultrahigh vacuum (UHV) conditions.
Co-reporter:Qiang Sun;Dr. Bay V. Tran;Liangliang Cai;Honghong Ma;Xin Yu;Dr. Chunxue Yuan; Dr. Meike Stöhr; Dr. Wei Xu
Angewandte Chemie 2017 Volume 129(Issue 40) pp:12333-12337
Publication Date(Web):2017/09/25
DOI:10.1002/ange.201706104
AbstractThe on-surface activation of carbon–halogen groups is an efficient route to produce radicals for constructing various hydrocarbons and carbon nanostructures. To date, the employed halide precursors have only one halogen attached to a carbon atom. It is thus of interest to study the effect of attaching more than one halogen atom to a carbon atom with the aim of producing multiple unpaired electrons. By introducing an alkenyl gem-dibromide, cumulene products were fabricated on a Au(111) surface by dehalogenative homocoupling reactions. The reaction products and pathways were unambiguously characterized by a combination of high-resolution scanning tunneling microscopy and non-contact atomic force microscopy measurements together with density functional calculations. This study further supplements the database of on-surface synthesis strategies and provides a facile manner for incorporation of more complicated carbon scaffolds into surface nanostructures.
Co-reporter:Qiang Sun;Dr. Bay V. Tran;Liangliang Cai;Honghong Ma;Xin Yu;Dr. Chunxue Yuan; Dr. Meike Stöhr; Dr. Wei Xu
Angewandte Chemie International Edition 2017 Volume 56(Issue 40) pp:12165-12169
Publication Date(Web):2017/09/25
DOI:10.1002/anie.201706104
AbstractThe on-surface activation of carbon–halogen groups is an efficient route to produce radicals for constructing various hydrocarbons and carbon nanostructures. To date, the employed halide precursors have only one halogen attached to a carbon atom. It is thus of interest to study the effect of attaching more than one halogen atom to a carbon atom with the aim of producing multiple unpaired electrons. By introducing an alkenyl gem-dibromide, cumulene products were fabricated on a Au(111) surface by dehalogenative homocoupling reactions. The reaction products and pathways were unambiguously characterized by a combination of high-resolution scanning tunneling microscopy and non-contact atomic force microscopy measurements together with density functional calculations. This study further supplements the database of on-surface synthesis strategies and provides a facile manner for incorporation of more complicated carbon scaffolds into surface nanostructures.
Co-reporter:Lei Xie;Chi Zhang;Yuanqi Ding; Dr. Wei Xu
Angewandte Chemie 2017 Volume 129(Issue 18) pp:5159-5163
Publication Date(Web):2017/04/24
DOI:10.1002/ange.201702589
AbstractThe structural transformation of supramolecular nanostructures with constitutional diversity and adaptability by dynamic coordination chemistry would be of fundamental importance for potential applications in molecular switching devices. The role of halogen doping in the formation of elementary metal–organic motifs on surfaces has not been reported. Now, the 9-ethylguanine molecule (G) and Ni atom, as a model system, are used for the structural transformation and stabilization of metal–organic motifs induced by iodine doping on Au(111). The iodine atoms are homogeneously located at particular hydrogen-rich locations enclosed by G molecules by electrostatic interactions, which would be the key for such an unexpected stabilizing effect. The generality and robustness of this approach are demonstrated in different metal–organic systems (G/Fe) and also by chlorine and bromine.
Co-reporter:Meiling Bao;Xiaoqing Wei;Liangliang Cai;Qiang Sun;Zhengxin Liu
Physical Chemistry Chemical Physics 2017 vol. 19(Issue 28) pp:18704-18708
Publication Date(Web):2017/07/19
DOI:10.1039/C7CP03862C
We studied the self-assembly of melem on the Au(111) and Ag(111) surfaces. By scanning tunneling microscopy imaging, we observed two different STM appearances of the melem molecule within the self-assembled nanostructure on Au(111), which resulted from the different intermolecular bonding configurations. Moreover, further DFT details including the intermolecular charge density difference and bonding energy were also obtained to compare the different natures of the intermolecular bonding configurations.
Co-reporter:Qiang Sun; Liangliang Cai; Shiyong Wang; Roland Widmer; Huanxin Ju; Junfa Zhu; Lei Li; Yunbin He; Pascal Ruffieux; Roman Fasel
Journal of the American Chemical Society 2016 Volume 138(Issue 4) pp:1106-1109
Publication Date(Web):January 18, 2016
DOI:10.1021/jacs.5b10725
Because of stability issues, carbyne, a one-dimensional chain of carbon atoms, has been much less investigated than other recent carbon allotropes such as graphene. Beyond that, metalation of such a linear carbon nanostructure with regularly distributed metal atoms is even more challenging. Here we report a successful on-surface synthesis of metalated carbyne chains by dehydrogenative coupling of ethyne molecules and copper atoms on a Cu(110) surface under ultrahigh-vacuum conditions. The length of the fabricated metalated carbyne chains was found to extend to the submicron scale (with the longest ones up to ∼120 nm). We expect that the herein-developed on-surface synthesis strategy for the efficient synthesis of organometallic carbon-based nanostructures will inspire more extensive experimental investigations of their physicochemical properties and explorations of their potential with respect to technological applications.
Co-reporter:Qiang Sun, Liangliang Cai, Honghong Ma, Chunxue Yuan and Wei Xu  
Chemical Communications 2016 vol. 52(Issue 35) pp:6009-6012
Publication Date(Web):31 Mar 2016
DOI:10.1039/C6CC01059H
We have successfully achieved the stereoselective synthesis of a specific cis-diene moiety through a dehalogenative homocoupling of alkenyl bromides on the Cu(110) surface, where the formation of a cis-form organometallic intermediate is the key to such a stereoselectivity as determined by DFT calculations.
Co-reporter:Qiang Sun, Liangliang Cai, Yuanqi Ding, Honghong Ma, Chunxue Yuan and Wei Xu  
Physical Chemistry Chemical Physics 2016 vol. 18(Issue 4) pp:2730-2735
Publication Date(Web):14 Dec 2015
DOI:10.1039/C5CP06459G
Wurtz reactions feature the dehalogenated coupling of alkyl halides. In comparison to their widely investigated counterparts, Ullmann reactions, Wurtz reactions have however been scarcely explored on surfaces. Herein, by combining high-resolution STM imaging and DFT calculations, we have systematically investigated Wurtz reactions on three chemically different metal surfaces including Cu(110), Ag(110) and Au(111). We find that the Wurtz reactions could be achieved on all three surfaces, and the temperatures for triggering the reactions are in the order of Cu(110) > Ag(110) > Au(111). Moreover, DFT calculations have been performed to unravel the pathways of on-surface Wurtz reactions and identify three basic steps of the reactions including debromination, diffusion and coupling processes. Interestingly, we found that the mechanism of the on-surface Wurtz reaction is intrinsically different from the Ullmann reaction and it is revealed that the coupling process is the rate-limiting step of Wurtz reactions on three different substrates. These findings have given a comprehensive picture of Wurtz reactions on metal surfaces and demonstrated that such a reaction could be an alternative reaction scheme for advanced on-surface synthesis.
Co-reporter:Chi Zhang, Lei Xie, Yuanqi Ding, Qiang Sun, and Wei Xu
ACS Nano 2016 Volume 10(Issue 3) pp:3776
Publication Date(Web):February 13, 2016
DOI:10.1021/acsnano.6b00393
Water is vital for life as a solvent. Specifically, it has been well established that DNA molecules are hydrated in vivo, and water has been found to be responsible for the presence of some noncanonical DNA base tautomers. Theoretical investigations have shown that the existence of water could significantly influence the relative stability of different DNA base tautomers, reduce the energy barrier of tautomeric conversions, and thus promote the formation of some rare base tautomers. In this work, we report the real-space experimental evidence of rare base tautomers. From the high-resolution scanning tunneling microscopy imaging, we surprisingly find the formation of the rare guanine tautomer, i.e., G/(3H,7H) form, on the Au(111) surface by delicately introducing water into the system. The key to the formation of this rare tautomer is proposed to be the “water bridge” that largely reduces the energy barriers of intramolecular proton-transfer processes as revealed by extensive density functional theory calculations. The real-space experimental evidence and the proposed mechanism make a step forward toward the fundamental understanding of water-assisted base tautomerization processes.Keywords: density functional theory; guanine; scanning tunneling microscopy; surface chemistry; tautomerization
Co-reporter:Qiang Sun, Liangliang Cai, Honghong Ma, Chunxue Yuan, and Wei Xu
ACS Nano 2016 Volume 10(Issue 7) pp:7023
Publication Date(Web):June 21, 2016
DOI:10.1021/acsnano.6b03048
On-surface C–C coupling reactions of molecular precursors with alkynyl functional groups demonstrate great potential for the controllable fabrication of low-dimensional carbon nanostructures/nanomaterials, such as carbyne, graphyne, and graphdiyne, which demand the incorporation of highly active sp-hybridized carbons. Recently, through a dehydrogenative homocoupling reaction of alkynes, the possibility was presented to fabricate surface nanostructures involving acetylenic linkages, while problems lie in the fact that different byproducts are inevitably formed when triggering the reactions at elevated temperatures. In this work, by delicately designing the molecular precursors with terminal alkynyl bromide, we introduce the dehalogenative homocoupling reactions on the surface. As a result, we successfully achieve the formation of dimer structures, one-dimensional molecular wires and two-dimensional molecular networks with acetylenic scaffoldings on an inert Au(111) surface, where the unexpected C–Au–C organometallic intermediates are also observed. This study further supplements the database of on-surface dehalogenative C–C coupling reactions, and more importantly, it provides us an alternative efficient way for incorporating the acetylenic scaffolding into low-dimensional surface nanostructures.Keywords: acetylenic scaffolding; C−C homocoupling; on-surface synthesis; scanning tunneling microscopy; surface chemistry
Co-reporter:Huihui Kong;Chi Zhang;Lei Xie;Likun Wang ;Dr. Wei Xu
Angewandte Chemie 2016 Volume 128( Issue 25) pp:7273-7276
Publication Date(Web):
DOI:10.1002/ange.201602572

Abstract

Constitutional dynamic chemistry (CDC), including both dynamic covalent chemistry and dynamic noncovalent chemistry, relies on reversible formation and breakage of bonds to achieve continuous changes in constitution by reorganization of components. In this regard, CDC is considered to be an efficient and appealing strategy for selective fabrication of surface nanostructures by virtue of dynamic diversity. Although constitutional dynamics of monolayered structures has been recently demonstrated at liquid/solid interfaces, most of molecular reorganization/reaction processes were thought to be irreversible under ultrahigh vacuum (UHV) conditions where CDC is therefore a challenge to be achieved. Here, we have successfully constructed a system that presents constitutional dynamics on a solid surface based on dynamic coordination chemistry, in which selective formation of metal–organic motifs is achieved under UHV conditions. The key to making this reversible switching successful is the molecule–substrate interaction as revealed by DFT calculations.

Co-reporter:Huihui Kong;Chi Zhang;Lei Xie;Likun Wang ;Dr. Wei Xu
Angewandte Chemie International Edition 2016 Volume 55( Issue 25) pp:7157-7160
Publication Date(Web):
DOI:10.1002/anie.201602572

Abstract

Constitutional dynamic chemistry (CDC), including both dynamic covalent chemistry and dynamic noncovalent chemistry, relies on reversible formation and breakage of bonds to achieve continuous changes in constitution by reorganization of components. In this regard, CDC is considered to be an efficient and appealing strategy for selective fabrication of surface nanostructures by virtue of dynamic diversity. Although constitutional dynamics of monolayered structures has been recently demonstrated at liquid/solid interfaces, most of molecular reorganization/reaction processes were thought to be irreversible under ultrahigh vacuum (UHV) conditions where CDC is therefore a challenge to be achieved. Here, we have successfully constructed a system that presents constitutional dynamics on a solid surface based on dynamic coordination chemistry, in which selective formation of metal–organic motifs is achieved under UHV conditions. The key to making this reversible switching successful is the molecule–substrate interaction as revealed by DFT calculations.

Co-reporter:Liangliang Cai;Qiang Sun;Chi Zhang;Yuanqi Ding ;Dr. Wei Xu
Chemistry - A European Journal 2016 Volume 22( Issue 6) pp:1918-1921
Publication Date(Web):
DOI:10.1002/chem.201504152

Abstract

Through the interplay of high-resolution scanning tunneling microscopy imaging and density functional theory calculations, the stepwise dehydrogenative homocoupling of alkyl chains on Cu(110) is demonstrated, proceeding from the intact chain, via the dehydrogenative intermediates, to the formation of the divers final coupling products.

Co-reporter:Chi Zhang; Lei Xie; Likun Wang; Huihui Kong; Qinggang Tan
Journal of the American Chemical Society 2015 Volume 137(Issue 36) pp:11795-11800
Publication Date(Web):August 31, 2015
DOI:10.1021/jacs.5b07314
Although tautomerization may directly affect the chemical or biological properties of molecules, real-space investigation on the tautomeric behaviors of organic molecules in a larger area of molecular networks has been scarcely reported. In this paper, we choose guanine (G) molecule as a model system. From the interplay of high-resolution scanning tunneling microscopy (STM) imaging and density functional theory (DFT) calculations, we have successfully achieved the tautomeric recognition, separation, and interconversion of G molecular networks (formed by two tautomeric forms G/9H and G/7H) with the aid of NaCl on the Au(111) surface in ultrahigh vacuum (UHV) conditions. Our results may serve as a prototypical system to provide important insights into tautomerization related issues, which should be intriguing to biochemistry, pharmaceutics, and other related fields.
Co-reporter:Chi Zhang, Qiang Sun, Hua Chen, Qinggang Tan and Wei Xu  
Chemical Communications 2015 vol. 51(Issue 3) pp:495-498
Publication Date(Web):14 Nov 2014
DOI:10.1039/C4CC07953A
From an interplay of UHV-STM imaging and DFT calculations, we have illustrated on-surface formation of polyphenyl chains through a hierarchical reaction pathway involving two different kinds of reactions (Ullmann coupling and cross-dehydrogenative coupling), which will provide a deeper understanding of on-surface chemical reactions and an alternative and efficient strategy to fabricate desired surface molecular nanostructures.
Co-reporter:Qiang Sun, Chi Zhang, Liangliang Cai, Lei Xie, Qinggang Tan and Wei Xu  
Chemical Communications 2015 vol. 51(Issue 14) pp:2836-2839
Publication Date(Web):24 Dec 2014
DOI:10.1039/C4CC08299K
From high-resolution UHV-STM imaging and DFT calculations we successfully obtained a 2D polymer structure formed through direct C–H activation followed by an aryl–aryl coupling of a metal-phthalocyanine (CoPc) on Ag(110).
Co-reporter:Qiang Sun, Liangliang Cai, Honghong Ma, Chunxue Yuan and Wei Xu  
Chemical Communications 2015 vol. 51(Issue 75) pp:14164-14166
Publication Date(Web):03 Aug 2015
DOI:10.1039/C5CC05554G
Through a careful design of the molecular precursor we have successfully constructed the metal–organic Sierpiński triangles on Au(111) via on-surface coordination chemistry, which is demonstrated by the interplay of high-resolution STM imaging and DFT calculations. The coordination Sierpiński triangles show high stabilities as evidenced by room temperature STM imaging, and could withstand a thermal treatment up to 450 K.
Co-reporter:Chi Zhang;Likun Wang;Lei Xie;Huihui Kong; Dr. Qinggang Tan;Liangliang Cai;Qiang Sun ; Dr. Wei Xu
ChemPhysChem 2015 Volume 16( Issue 10) pp:2099-2105
Publication Date(Web):
DOI:10.1002/cphc.201500301

Abstract

Template cations have been extensively employed in the formation, stabilization and regulation of structural polymorphism of G-quadruplex structures in vitro. However, the direct addition of salts onto solid surfaces, especially under ultra-high-vacuum (UHV) conditions, to explore the feasibility and universality of the formation of G-quartet complexes in a solventless environment has not been reported. By combining UHV-STM imaging and DFT calculations, we have shown that three different G-quartet-M (M: Na/K/Ca) complexes can be obtained on Au(111) using alkali and alkaline earth salts as reactants. We have also identified the driving forces (intra-quartet hydrogen bonding and electrostatic ionic bonding) for the formation of these complexes and quantified the interactions involved. Our results demonstrate a novel route to fabricate G-quartet-related complexes on solid surfaces, providing an alternative feasible way to bring metal elements to surfaces for constructing metal–organic systems.

Co-reporter:Qiang Sun;Liangliang Cai;Yuanqi Ding;Lei Xie;Chi Zhang;Dr. Qinggang Tan ;Dr. Wei Xu
Angewandte Chemie International Edition 2015 Volume 54( Issue 15) pp:4549-4552
Publication Date(Web):
DOI:10.1002/anie.201412307

Abstract

Homocouplings of hydrocarbon groups including alkynyl (sp1), alkyl (sp3), and aryl (sp2) have recently been investigated on surfaces with the interest of fabricating novel carbon nanostructures/nanomaterials and getting fundamental understanding. Investigated herein is the on-surface homocoupling of an alkenyl group which is the last elementary unit of hydrocarbons. Through real-space direct visualization (scanning tunneling microscopy imaging) and density functional theory calculations, the two terminal alkenyl groups were found to couple into a diene moiety on copper surfaces, and is contrary to the common dimerization products of alkenes in solution. Furthermore, detailed DFT-based transition-state searches were performed to unravel this new reaction pathway.

Co-reporter:Huihui Kong;Likun Wang;Qiang Sun;Chi Zhang;Dr. Qinggang Tan ;Dr. Wei Xu
Angewandte Chemie International Edition 2015 Volume 54( Issue 22) pp:6526-6530
Publication Date(Web):
DOI:10.1002/anie.201501701

Abstract

Scanning tunneling microscopy (STM) manipulation techniques have proven to be a powerful method for advanced nanofabrication of artificial molecular architectures on surfaces. With increasing complexity of the studied systems, STM manipulations are then extended to more complicated structural motifs. Previously, the dissociation and construction of various motifs have been achieved, but only in a single direction. In this report, the controllable scission and seamless stitching of metal–organic clusters have been successfully achieved through STM manipulations. The system presented here includes two sorts of hierarchical interactions where coordination bonds hold the metal–organic elementary motifs while hydrogen bonds among elementary motifs are directly involved in bond breakage and re-formation. The key to making this reversible switching successful is the hydrogen bonding, which is comparatively facile to be broken for controllable scission, and, on the other hand, the directional characteristic of hydrogen bonding makes precise stitching feasible.

Co-reporter:Huihui Kong;Likun Wang;Qiang Sun;Chi Zhang;Dr. Qinggang Tan ;Dr. Wei Xu
Angewandte Chemie 2015 Volume 127( Issue 22) pp:6626-6630
Publication Date(Web):
DOI:10.1002/ange.201501701

Abstract

Scanning tunneling microscopy (STM) manipulation techniques have proven to be a powerful method for advanced nanofabrication of artificial molecular architectures on surfaces. With increasing complexity of the studied systems, STM manipulations are then extended to more complicated structural motifs. Previously, the dissociation and construction of various motifs have been achieved, but only in a single direction. In this report, the controllable scission and seamless stitching of metal–organic clusters have been successfully achieved through STM manipulations. The system presented here includes two sorts of hierarchical interactions where coordination bonds hold the metal–organic elementary motifs while hydrogen bonds among elementary motifs are directly involved in bond breakage and re-formation. The key to making this reversible switching successful is the hydrogen bonding, which is comparatively facile to be broken for controllable scission, and, on the other hand, the directional characteristic of hydrogen bonding makes precise stitching feasible.

Co-reporter:Qiang Sun;Liangliang Cai;Yuanqi Ding;Lei Xie;Chi Zhang;Dr. Qinggang Tan ;Dr. Wei Xu
Angewandte Chemie 2015 Volume 127( Issue 15) pp:4632-4635
Publication Date(Web):
DOI:10.1002/ange.201412307

Abstract

Homocouplings of hydrocarbon groups including alkynyl (sp1), alkyl (sp3), and aryl (sp2) have recently been investigated on surfaces with the interest of fabricating novel carbon nanostructures/nanomaterials and getting fundamental understanding. Investigated herein is the on-surface homocoupling of an alkenyl group which is the last elementary unit of hydrocarbons. Through real-space direct visualization (scanning tunneling microscopy imaging) and density functional theory calculations, the two terminal alkenyl groups were found to couple into a diene moiety on copper surfaces, and is contrary to the common dimerization products of alkenes in solution. Furthermore, detailed DFT-based transition-state searches were performed to unravel this new reaction pathway.

Co-reporter:Chi Zhang, Qiang Sun, Kai Sheng, Qinggang Tan and Wei Xu  
Nanoscale 2014 vol. 6(Issue 19) pp:11062-11065
Publication Date(Web):05 Aug 2014
DOI:10.1039/C4NR03754E
From an interplay of high-resolution STM imaging/manipulation and DFT calculations, we have revealed that different self-assembled nanostructures of BA molecules on Cu(110) are attributable to specific molecular adsorption geometries, and thus the corresponding intermolecular hydrogen bonding patterns. The STM manipulations demonstrate the feasibility of switching such weak-hydrogen-bonding patterns.
Co-reporter:Qiang Sun, Chi Zhang, Huihui Kong, Qinggang Tan and Wei Xu  
Chemical Communications 2014 vol. 50(Issue 80) pp:11825-11828
Publication Date(Web):13 Aug 2014
DOI:10.1039/C4CC05482B
Through the interplay of high-resolution scanning tunneling microscopy (STM) imaging/manipulation and density functional theory (DFT) calculations, we have demonstrated that an unprecedented selective aryl–aryl coupling via direct C–H bond activation can be successfully achieved on Cu(110). These findings present a simple and generalized route for preparing low dimensional carbon nanomaterials.
Co-reporter:Chi Zhang, Qiang Sun, Huihui Kong, Likun Wang, Qinggang Tan and Wei Xu  
Chemical Communications 2014 vol. 50(Issue 100) pp:15924-15927
Publication Date(Web):30 Sep 2014
DOI:10.1039/C4CC06925K
From the interplay of high-resolution scanning tunneling microscopy (STM) imaging/manipulation and density functional theory (DFT) calculations, we have shown that the spontaneous formation of an organometallic complex by copper–alkene interactions can be successfully achieved, where the specific molecular adsorption geometry is revealed to be the key for facilitating such interaction.
Co-reporter:Huihui Kong, Likun Wang, Qinggang Tan, Chi Zhang, Qiang Sun and Wei Xu  
Chemical Communications 2014 vol. 50(Issue 24) pp:3242-3244
Publication Date(Web):09 Jan 2014
DOI:10.1039/C3CC49241A
Interplay between high-resolution STM imaging and DFT calculations demonstrates that through introduction of Ni atoms the self-assembled structures of cytosine could undergo a structural transformation from 1-D chains to 0-D clusters on Au(111). Interestingly, the 0-D clusters formed are separately distributed on the surface.
Co-reporter:Qinggang Tan, Chi Zhang, Ning Wang, Xiujuan Zhu, Qiang Sun, Mikkel F. Jacobsen, Kurt V. Gothelf, Flemming Besenbacher, Aiguo Hu and Wei Xu  
Chemical Communications 2014 vol. 50(Issue 3) pp:356-358
Publication Date(Web):28 Oct 2013
DOI:10.1039/C3CC46149A
From an interplay of high-resolution scanning tunneling microscopy (STM) imaging and density functional theory (DFT) calculations we demonstrate that by delicately choosing the parent molecule (adenine) we are able to tune the self-assembled nanostructures of adenine derivatives which are directed by the specific intermolecular interactions provided by the adenine moiety.
Co-reporter:Qiang Sun, Chi Zhang, Liangliang Cai, Qinggang Tan and Wei Xu  
Chemical Communications 2014 vol. 50(Issue 81) pp:12112-12115
Publication Date(Web):21 Aug 2014
DOI:10.1039/C4CC05235H
From high-resolution UHV-STM imaging and DFT calculations we have demonstrated a novel method to construct well-ordered molecular nanostructures of an unfunctionalized aromatic molecule (4Ph) on both Ag(110) and Cu(110) by introducing oxygen molecules.
Co-reporter:Qiang Sun, Chi Zhang, Likun Wang, Zhiwen Li, Aiguo Hu, Qinggang Tan and Wei Xu  
Chemical Communications 2014 vol. 50(Issue 14) pp:1728-1730
Publication Date(Web):09 Dec 2013
DOI:10.1039/C3CC48992B
From the interplay of STM imaging and DFT calculations we have investigated the isomerization of an alkene molecule on Cu(110) under ultrahigh vacuum conditions. We show that the on-surface cis–trans isomerization could efficiently occur well below room temperature, in which the copper surface is speculated to play a key role.
Co-reporter:Likun Wang, Huihui Kong, Chi Zhang, Qiang Sun, Liangliang Cai, Qinggang Tan, Flemming Besenbacher, and Wei Xu
ACS Nano 2014 Volume 8(Issue 11) pp:11799
Publication Date(Web):October 27, 2014
DOI:10.1021/nn5054156
Although the G-quartet structure has been extensively investigated due to its biological importance, the formation mechanism, in particular, the necessity of metal centers, of an isolated G-quartet on solid surfaces remains ambiguous. Here, by using scanning tunneling microscopy under well-controlled ultra-high-vacuum conditions and density functional theory calculations we have been able to clarify that besides the intraquartet hydrogen bonding a metal center is mandatory for the formation of an isolated G-quartet. Furthermore, by subtly perturbing the local coordination bonding schemes within the formed G-quartet complex via local nanoscale scanning tunneling microscopy manipulations, we succeed in modulating the d orbitals and the accompanying magnetic properties of the metal center. Our results demonstrate the feasibility of forming an isolated G-quartet complex on a solid surface and that the strategy of modulating electronic and magnetic properties of the metal center can be extended to other related systems such as molecular spintronics.Keywords: coordination bond; density functional theory; G-quartet; nanoscale manipulation; scanning tunneling microscopy;
Co-reporter:Qiang Sun ; Dr. Wei Xu
ChemPhysChem 2014 Volume 15( Issue 13) pp:2657-2663
Publication Date(Web):
DOI:10.1002/cphc.201402021

Abstract

Scanning tunneling microscopy (STM) manipulation has received wide attention in the surface science community since the pioneering work of Eigler to construct surface nanostructures in an atom by atom fashion. Lots of scientists have been inspired and devoted to study the surface issues with the help of STM manipulations and great achievements have been obtained. In this Minireview, we mainly describe the recent progress in applying STM manipulations to regulate the inter-adsorbate and adsorbate–substrate interactions on solid surfaces. It was shown that this technique could not only differentiate intermolecular interactions but also construct molecular nanostructures by regulating different kinds of inter-adsorbate interactions or adsorbate–substrate interactions.

Co-reporter:Huihui Kong, Qiang Sun, Likun Wang, Qinggang Tan, Chi Zhang, Kai Sheng, and Wei Xu
ACS Nano 2014 Volume 8(Issue 2) pp:1804
Publication Date(Web):January 29, 2014
DOI:10.1021/nn4061918
Nucleobase tautomerization might induce mismatch of base pairing. Metals, involved in many important biophysical processes, have been theoretically proven to be capable of affecting tautomeric equilibria and stabilities of different nucleobase tautomers. However, direct real-space evidence on demonstrating different nucleobase tautomers and further revealing the effect of metals on their tautomerization at surfaces has not been reported to date. From the interplay of high-resolution STM imaging and DFT calculations, we show for the first time that tautomerization of guanine from G/9H to G/7H is facilitated on Au(111) by heating, whereas such tautomerization process is effectively inhibited by introducing Ni atoms due to its preferential coordination at the N7 site of G/9H. These findings may help to elucidate possible influence of metals on nucleobase tautomerization and provide from a molecular level some theoretical basis on metal-based drug design.Keywords: density functional theory; guanine tautomerization; scanning tunneling microscopy
Co-reporter:Qiang Sun ; Chi Zhang ; Zhiwen Li ; Huihui Kong ; Qinggang Tan ; Aiguo Hu
Journal of the American Chemical Society 2013 Volume 135(Issue 23) pp:8448-8451
Publication Date(Web):May 24, 2013
DOI:10.1021/ja404039t
On-surface fabrication of covalently interlinked conjugated nanostructures has attracted significant attention, mainly because of the high stability and efficient electron transport ability of these structures. Here, from the interplay of scanning tunneling microscopy imaging and density functional theory calculations, we report for the first time on-surface formation of one-dimensional polyphenylene chains through Bergman cyclization followed by radical polymerization on Cu(110). The formed surface nanostructures were further corroborated by the results for the ex situ-synthesized molecular product after Bergman cyclization. These findings are of particular interest and importance for the construction of molecular electronic nanodevices on surfaces.
Co-reporter:Liang Dong, Qiang Sun, Chi Zhang, Zhiwen Li, Kai Sheng, Huihui Kong, Qinggang Tan, Yunxiang Pan, Aiguo Hu and Wei Xu  
Chemical Communications 2013 vol. 49(Issue 17) pp:1735-1737
Publication Date(Web):11 Jan 2013
DOI:10.1039/C3CC38383K
The native copper adatoms get trapped in a self-assembled molecular nanostructure which is mainly formed by the intermolecular van der Waals interactions, and two dominating specific binding modes between the adatoms and the molecules are revealed at the atomic scale by high-resolution STM imaging.
Co-reporter:Dr. Wei Xu;Huihui Kong;Chi Zhang;Qiang Sun;Henkjan Gersen;Liang Dong;Dr. Qinggang Tan; Erik Lægsgaard;Dr. Flemming Besenbacher
Angewandte Chemie 2013 Volume 125( Issue 29) pp:7590-7593
Publication Date(Web):
DOI:10.1002/ange.201301580
Co-reporter:Dr. Wei Xu;Huihui Kong;Chi Zhang;Qiang Sun;Henkjan Gersen;Liang Dong;Dr. Qinggang Tan; Erik Lægsgaard;Dr. Flemming Besenbacher
Angewandte Chemie International Edition 2013 Volume 52( Issue 29) pp:7442-7445
Publication Date(Web):
DOI:10.1002/anie.201301580
Co-reporter:Kai Sheng;Huihui Kong;Zhiwen Li;Chi Zhang;Qiang Sun;Dr. Qinggang Tan;Dr. Yunxiang Pan;Dr. Aiguo Hu;Dr. Wei Xu
ChemCatChem 2013 Volume 5( Issue 9) pp:2662-2666
Publication Date(Web):
DOI:10.1002/cctc.201200955

Abstract

Catalytic reactions occurring on oxide-supported Cu and Cu-supported oxide catalysts are of fundamental interest in both industrial and scientific fields. Though the interface between Cu and oxide species has been regarded as the reaction site, the exact role of the interface in the catalytic reactions is not fully understood yet. In this work, by using a model system including CuO chains supported on Cu(1 1 0) and an organic molecule with alkynyl and aldehyde groups, we attempted to obtain a fundamental understanding of the role of the interface in the catalytic reactions. A combination of high-resolution scanning tunneling microscopy imaging and density functional theory calculations provided direct evidence at the atomic scale that the interface between the CuO chains and the Cu(1 1 0) surface is the most favorable site for the adsorption and activation of organic molecules, and the oxygen of CuO has an activity to oxidize both the alkynyl and aldehyde groups of the molecules adsorbed at the interface.

Co-reporter:Wei Xu ; Jian-guo Wang ; Miao Yu ; Erik Lægsgaard ; Ivan Stensgaard ; Trolle R. Linderoth ; Bjørk Hammer ; Chen Wang ;Flemming Besenbacher
Journal of the American Chemical Society 2010 Volume 132(Issue 45) pp:15927-15929
Publication Date(Web):October 26, 2010
DOI:10.1021/ja1078909
In this study, through the choice of the well-known G−K biological coordination system, bioligand−alkali metal coordination has for the first time been brought onto an inert Au(111) surface. Using the interplay between high-resolution scanning tunneling microscopy and density functional theory calculations, we show that the mobile G molecules on Au(111) can effectively coordinate with the K atoms, resulting in a metallosupramolecular porous network that is stabilized by a delicate balance between hydrogen bonding and metal−organic coordination.
Co-reporter: Wei Xu; Jian-guo Wang;Dr. Mikkel F. Jacobsen;Dr. Manuela Mura;Dr. Miao Yu;Dr. Ross E. A. Kelly;Qiang-qiang Meng; Erik Lægsgaard; Ivan Stensgaard; Trolle R. Linderoth; Jørgen Kjems; Lev N. Kantorovich; Kurt V. Gothelf; Flemming Besenbacher
Angewandte Chemie International Edition 2010 Volume 49( Issue 49) pp:9373-9377
Publication Date(Web):
DOI:10.1002/anie.201003390
Co-reporter:Meiling Bao, Xiaoqing Wei, Liangliang Cai, Qiang Sun, Zhengxin Liu and Wei Xu
Physical Chemistry Chemical Physics 2017 - vol. 19(Issue 28) pp:NaN18708-18708
Publication Date(Web):2017/06/27
DOI:10.1039/C7CP03862C
We studied the self-assembly of melem on the Au(111) and Ag(111) surfaces. By scanning tunneling microscopy imaging, we observed two different STM appearances of the melem molecule within the self-assembled nanostructure on Au(111), which resulted from the different intermolecular bonding configurations. Moreover, further DFT details including the intermolecular charge density difference and bonding energy were also obtained to compare the different natures of the intermolecular bonding configurations.
Co-reporter:Lei Xie, Chi Zhang, Yuanqi Ding, Wenlong E, Chunxue Yuan and Wei Xu
Chemical Communications 2017 - vol. 53(Issue 62) pp:NaN8769-8769
Publication Date(Web):2017/07/14
DOI:10.1039/C7CC04446A
From the combination of STM imaging and DFT calculations, we show that both alkali metal and halogens interact with different sites of the target molecules resulting in structural formation in a synergistic way. The elementary metal–organic motifs are connected by Cl in a variety of fashions demonstrating structural diversity.
Co-reporter:Qiang Sun, Chi Zhang, Liangliang Cai, Qinggang Tan and Wei Xu
Chemical Communications 2014 - vol. 50(Issue 81) pp:NaN12115-12115
Publication Date(Web):2014/08/21
DOI:10.1039/C4CC05235H
From high-resolution UHV-STM imaging and DFT calculations we have demonstrated a novel method to construct well-ordered molecular nanostructures of an unfunctionalized aromatic molecule (4Ph) on both Ag(110) and Cu(110) by introducing oxygen molecules.
Co-reporter:Liang Dong, Qiang Sun, Chi Zhang, Zhiwen Li, Kai Sheng, Huihui Kong, Qinggang Tan, Yunxiang Pan, Aiguo Hu and Wei Xu
Chemical Communications 2013 - vol. 49(Issue 17) pp:NaN1737-1737
Publication Date(Web):2013/01/11
DOI:10.1039/C3CC38383K
The native copper adatoms get trapped in a self-assembled molecular nanostructure which is mainly formed by the intermolecular van der Waals interactions, and two dominating specific binding modes between the adatoms and the molecules are revealed at the atomic scale by high-resolution STM imaging.
Co-reporter:Qinggang Tan, Chi Zhang, Ning Wang, Xiujuan Zhu, Qiang Sun, Mikkel F. Jacobsen, Kurt V. Gothelf, Flemming Besenbacher, Aiguo Hu and Wei Xu
Chemical Communications 2014 - vol. 50(Issue 3) pp:NaN358-358
Publication Date(Web):2013/10/28
DOI:10.1039/C3CC46149A
From an interplay of high-resolution scanning tunneling microscopy (STM) imaging and density functional theory (DFT) calculations we demonstrate that by delicately choosing the parent molecule (adenine) we are able to tune the self-assembled nanostructures of adenine derivatives which are directed by the specific intermolecular interactions provided by the adenine moiety.
Co-reporter:Qiang Sun, Chi Zhang, Liangliang Cai, Lei Xie, Qinggang Tan and Wei Xu
Chemical Communications 2015 - vol. 51(Issue 14) pp:NaN2839-2839
Publication Date(Web):2014/12/24
DOI:10.1039/C4CC08299K
From high-resolution UHV-STM imaging and DFT calculations we successfully obtained a 2D polymer structure formed through direct C–H activation followed by an aryl–aryl coupling of a metal-phthalocyanine (CoPc) on Ag(110).
Co-reporter:Qiang Sun, Chi Zhang, Likun Wang, Zhiwen Li, Aiguo Hu, Qinggang Tan and Wei Xu
Chemical Communications 2014 - vol. 50(Issue 14) pp:NaN1730-1730
Publication Date(Web):2013/12/09
DOI:10.1039/C3CC48992B
From the interplay of STM imaging and DFT calculations we have investigated the isomerization of an alkene molecule on Cu(110) under ultrahigh vacuum conditions. We show that the on-surface cis–trans isomerization could efficiently occur well below room temperature, in which the copper surface is speculated to play a key role.
Co-reporter:Chi Zhang, Qiang Sun, Hua Chen, Qinggang Tan and Wei Xu
Chemical Communications 2015 - vol. 51(Issue 3) pp:NaN498-498
Publication Date(Web):2014/11/14
DOI:10.1039/C4CC07953A
From an interplay of UHV-STM imaging and DFT calculations, we have illustrated on-surface formation of polyphenyl chains through a hierarchical reaction pathway involving two different kinds of reactions (Ullmann coupling and cross-dehydrogenative coupling), which will provide a deeper understanding of on-surface chemical reactions and an alternative and efficient strategy to fabricate desired surface molecular nanostructures.
Co-reporter:Qiang Sun, Liangliang Cai, Honghong Ma, Chunxue Yuan and Wei Xu
Chemical Communications 2016 - vol. 52(Issue 35) pp:NaN6012-6012
Publication Date(Web):2016/03/31
DOI:10.1039/C6CC01059H
We have successfully achieved the stereoselective synthesis of a specific cis-diene moiety through a dehalogenative homocoupling of alkenyl bromides on the Cu(110) surface, where the formation of a cis-form organometallic intermediate is the key to such a stereoselectivity as determined by DFT calculations.
Co-reporter:Huihui Kong, Likun Wang, Qinggang Tan, Chi Zhang, Qiang Sun and Wei Xu
Chemical Communications 2014 - vol. 50(Issue 24) pp:NaN3244-3244
Publication Date(Web):2014/01/09
DOI:10.1039/C3CC49241A
Interplay between high-resolution STM imaging and DFT calculations demonstrates that through introduction of Ni atoms the self-assembled structures of cytosine could undergo a structural transformation from 1-D chains to 0-D clusters on Au(111). Interestingly, the 0-D clusters formed are separately distributed on the surface.
Co-reporter:Qiang Sun, Chi Zhang, Huihui Kong, Qinggang Tan and Wei Xu
Chemical Communications 2014 - vol. 50(Issue 80) pp:NaN11828-11828
Publication Date(Web):2014/08/13
DOI:10.1039/C4CC05482B
Through the interplay of high-resolution scanning tunneling microscopy (STM) imaging/manipulation and density functional theory (DFT) calculations, we have demonstrated that an unprecedented selective aryl–aryl coupling via direct C–H bond activation can be successfully achieved on Cu(110). These findings present a simple and generalized route for preparing low dimensional carbon nanomaterials.
Co-reporter:Chi Zhang, Qiang Sun, Huihui Kong, Likun Wang, Qinggang Tan and Wei Xu
Chemical Communications 2014 - vol. 50(Issue 100) pp:NaN15927-15927
Publication Date(Web):2014/09/30
DOI:10.1039/C4CC06925K
From the interplay of high-resolution scanning tunneling microscopy (STM) imaging/manipulation and density functional theory (DFT) calculations, we have shown that the spontaneous formation of an organometallic complex by copper–alkene interactions can be successfully achieved, where the specific molecular adsorption geometry is revealed to be the key for facilitating such interaction.
Co-reporter:Qiang Sun, Liangliang Cai, Honghong Ma, Chunxue Yuan and Wei Xu
Chemical Communications 2015 - vol. 51(Issue 75) pp:NaN14166-14166
Publication Date(Web):2015/08/03
DOI:10.1039/C5CC05554G
Through a careful design of the molecular precursor we have successfully constructed the metal–organic Sierpiński triangles on Au(111) via on-surface coordination chemistry, which is demonstrated by the interplay of high-resolution STM imaging and DFT calculations. The coordination Sierpiński triangles show high stabilities as evidenced by room temperature STM imaging, and could withstand a thermal treatment up to 450 K.
Co-reporter:Qiang Sun, Liangliang Cai, Yuanqi Ding, Honghong Ma, Chunxue Yuan and Wei Xu
Physical Chemistry Chemical Physics 2016 - vol. 18(Issue 4) pp:NaN2735-2735
Publication Date(Web):2015/12/14
DOI:10.1039/C5CP06459G
Wurtz reactions feature the dehalogenated coupling of alkyl halides. In comparison to their widely investigated counterparts, Ullmann reactions, Wurtz reactions have however been scarcely explored on surfaces. Herein, by combining high-resolution STM imaging and DFT calculations, we have systematically investigated Wurtz reactions on three chemically different metal surfaces including Cu(110), Ag(110) and Au(111). We find that the Wurtz reactions could be achieved on all three surfaces, and the temperatures for triggering the reactions are in the order of Cu(110) > Ag(110) > Au(111). Moreover, DFT calculations have been performed to unravel the pathways of on-surface Wurtz reactions and identify three basic steps of the reactions including debromination, diffusion and coupling processes. Interestingly, we found that the mechanism of the on-surface Wurtz reaction is intrinsically different from the Ullmann reaction and it is revealed that the coupling process is the rate-limiting step of Wurtz reactions on three different substrates. These findings have given a comprehensive picture of Wurtz reactions on metal surfaces and demonstrated that such a reaction could be an alternative reaction scheme for advanced on-surface synthesis.
1,1'-Biphenyl, 4,4'-bis(2-bromoethynyl)-
1,1'-Biphenyl, 4-[(1E)-2-bromoethenyl]-
Benzene, 1,3,5-tris(2-bromoethynyl)-
Mitogen-activated protein kinase p38
Mitogen-activated protein kinase
Cyclin (human clone λP1-4 gene PRAD1 reduced) (9CI)
alpha-D-Glucopyranoside, beta-D-fructofuranosyl, polymer with methyloxirane and 2,2-oxybis(ethanol)
1,1'-Biphenyl, 4-[2-(trimethylsilyl)ethynyl]-