•The crystal phase of UCNPs can be tuned by doping Mn2+.•Mn2+ doping induced multicolor output from yellow to red can be achieved.•The enhancement of the R/G ratio was realized via increasing Mn2+concentration.In this paper, different Mn2+ doped NaYF4: Yb/Er nanoparticles were synthesized by a simple one-pot hydrothermal method using polyethylene glycol (PEG) as coating polymer. The as-prepared samples were characterized by X-ray diffraction (XRD), transmission electron microscopy (TEM), and upconversion (UC) spectra. The XRD results revealed that the crystal phase of NaYF4: Yb/Er nanoparticles could be readily tuned from hexagonal to cubic phase by doping Mn2+. Under the excitation of 980 nm laser, UC luminescent colors were also changed from yellow to red by doping Mn2+. Moreover, the remarkable enhancement of red to green emission (R/G) ratio from 1.79 to 10.71 was achieved when increasing Mn2+ concentration from 0% to 30%. These UC nanoparticles with controlled crystal structure, tunable output colors, and enhanced R/G ratio may have potential applications in optical devices, color display, and especially biomedical imaging.

Although near-atomic resolutions have been routinely achieved for structural determination of many icosahedral viral capsids, structures of genomes and associated proteins within the capsids are still less characterized because the genome information is overlapped by the highly symmetric capsid information in the virus particle images. We recently developed a software package for symmetry-mismatch structural reconstruction and determined the structures of the genome and RNA polymerases within an icosahedral virus for the first time. Here, we describe the protocol used for this structural determination, which may facilitate structural biologists in investigating the structures of viral genome and associated proteins.

In this paper, optical/magnetic multi-functional NaErF4 nanocrystals with high quality, different phases and shapes were synthesized by a simple hydrothermal method using oleic acid as the capping agent. The structure, upconversion luminescence and magnetic properties were characterized by various techniques. The transmission electron microscopy results reveal that the nanocrystals are of high quality and can be self-assembled into a two-dimensional ordered structure. Moreover, the crystal phase and shape can be readily controlled by adjusting the reaction temperature and F− content. The results reveal that high temperature can favor the formation of a hexagonal phase structure and promote the phase transformation from the cubic to hexagonal phase. The phase transformation mechanism based on the free energy theory was discussed in detail. In addition, the F− content plays a critical role in determining the morphology of the final products. A high F− content is beneficial for the formation of the one-dimensional rod-like shape. Interestingly, phase-induced upconversion luminescence color tuning from red to green was observed. All of the as-prepared NaErF4 nanocrystals possess paramagnetic properties at room temperature and the magnetizations of the nanocrystals with spherical-like cubic, cubic, and rod-like shapes were measured as 1.69 emu g−1, 2.53 emu g−1and 2.29 emu g−1 at 20 kOe, respectively, which are larger than most previously reported Gd-based nanocrystals. In addition, T2-weighted magnetic resonance imaging based on these NaErF4 nanocrystals was demonstrated for the first time. Therefore, these tunable upconversion fluorescent NaErF4 nanocrystals with excellent paramagnetic properties can be used as promising dual-modal nanoprobes for optical bioimaging and magnetic resonance imaging, and may have potential applications in bioseparation.

•The cypovirus capsid structure was resolved at 3.3-Å resolution using a 200-kV TEM.•The criterion for particle image selection was proposed.•The structure of RdRp complex within the capsid was resolved at 3.9-Å resolution.•The conformational change of RdRp suggests that the RdRp might also function as an RNA helicase.Single-particle cryo-electron microscopy (cryo-EM) allows the high-resolution structural determination of biological assemblies in a near-native environment. However, all high-resolution (better than 3.5 Å) cryo-EM structures reported to date were obtained by using 300 kV transmission electron microscopes (TEMs). We report here the structures of a cypovirus capsid of 750-Å diameter at 3.3-Å resolution and of RNA-dependent RNA polymerase (RdRp) complexes within the capsid at 3.9-Å resolution using a 200-kV TEM. The newly resolved structure revealed conformational changes of two subdomains in the RdRp. These conformational changes, which were involved in RdRp's switch from non-transcribing to transcribing mode, suggest that the RdRp may facilitate the unwinding of genomic double-stranded RNA. The possibility of 3-Å resolution structural determinations for biological assemblies of relatively small sizes using cryo-EM at 200 kV was discussed.Download high-res image (407KB)Download full-size image

•The multifunctional UCNPs with high monodispersity were synthesized.•The UCNPs present large r1 value and binary CT contrast agents.•These UCNPs were demonstrated as optimal probes for tri-modal bioimaging.Development of high-quality upconversion nanoparticles (UCNPs) with combination of the merits of multiple molecular imaging techniques, such as, upconversion luminescence (UCL) imaging, X-ray computed tomography (CT), and magnetic resonance (MR) imaging, could significantly improve the accuracy of biological diagnosis. In this work, multifunctional BaYbF5: Gd/Er (50:2 mol%) UCNPs were synthesized via a solvothermal method using oleic acid (OA) as surface ligands (denoted as OA-UCNPs). The OA-UCNPs were further treated by diluted HCl to form ligand-free UCNPs (LF-UCNPs) for later bioimaging applications. The cytotoxicity assay in HeLa cells shows low cell toxicity of these LF-UCNPs. Owing to the efficient UCL of BaYbF5: Gd/Er, the LF-UCNPs were successfully used as luminescent bioprobe in UCL bioimaging. And, X-ray CT imaging reveals that BaYbF5: Gd/Er UCNPs can act as potential contrast agents for detection of the liver and spleen in the live mice owing to the high-Z elements (e.g., Ba, Yb, and Gd) in host matrix. Moreover, with the addition of Gd, the as-designed UCNPs exhibit additional positive contrast enhancement in T1-weighted MR imaging. These findings demonstrate that BaYbF5: Gd/Er UCNPs are potential candidates for tri-modal imaging.Multifunctional BaYbF5: Gd/Er upconversion nanoparticles with efficient upconversion emission, high absorption coefficient, predominant paramagnetic behavior, and low biological toxicity were demonstrated for tri-modality in vivo UCL, CT and MR imaging.

In this paper, optical/magnetic multi-functional NaErF4 nanocrystals with high quality, different phases and shapes were synthesized by a simple hydrothermal method using oleic acid as the capping agent. The structure, upconversion luminescence and magnetic properties were characterized by various techniques. The transmission electron microscopy results reveal that the nanocrystals are of high quality and can be self-assembled into a two-dimensional ordered structure. Moreover, the crystal phase and shape can be readily controlled by adjusting the reaction temperature and F− content. The results reveal that high temperature can favor the formation of a hexagonal phase structure and promote the phase transformation from the cubic to hexagonal phase. The phase transformation mechanism based on the free energy theory was discussed in detail. In addition, the F− content plays a critical role in determining the morphology of the final products. A high F− content is beneficial for the formation of the one-dimensional rod-like shape. Interestingly, phase-induced upconversion luminescence color tuning from red to green was observed. All of the as-prepared NaErF4 nanocrystals possess paramagnetic properties at room temperature and the magnetizations of the nanocrystals with spherical-like cubic, cubic, and rod-like shapes were measured as 1.69 emu g−1, 2.53 emu g−1and 2.29 emu g−1 at 20 kOe, respectively, which are larger than most previously reported Gd-based nanocrystals. In addition, T2-weighted magnetic resonance imaging based on these NaErF4 nanocrystals was demonstrated for the first time. Therefore, these tunable upconversion fluorescent NaErF4 nanocrystals with excellent paramagnetic properties can be used as promising dual-modal nanoprobes for optical bioimaging and magnetic resonance imaging, and may have potential applications in bioseparation.