Pradipsinh K. Rathod

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Name: Rathod, Pradipsinh
Organization: University of Washington , USA
Department: Department of Chemistry
Title: Professor(PhD)
Co-reporter:Praveen Balabaskaran Nina;Ajeet Kumar Mohanty;Shuvankar Ballav
Malaria Journal 2017 Volume 16( Issue 1) pp:284
Publication Date(Web):11 July 2017
DOI:10.1186/s12936-017-1931-8
In global efforts to track mosquito infectivity and parasite elimination, controlled mosquito-feeding experiments can help in understanding the dynamics of parasite development in vectors. Anopheles stephensi is often accepted as the major urban malaria vector that transmits Plasmodium in Goa and elsewhere in South Asia. However, much needs to be learned about the interactions of Plasmodium vivax with An. stephensi. As a component of the US NIH International Center of Excellence for Malaria Research (ICEMR) for Malaria Evolution in South Asia (MESA), a series of membrane-feeding experiments with wild An. stephensi and P. vivax were carried out to better understand this vector-parasite interaction.Wild An. stephensi larvae and pupae were collected from curing water in construction sites in the city of Ponda, Goa, India. The larvae and pupae were reared at the MESA ICEMR insectary within the National Institute of Malaria Research (NIMR) field unit in Goa until they emerged into adult mosquitoes. Blood for membrane-feeding experiments was obtained from malaria patients at the local Goa Medical College and Hospital who volunteered for the study. Parasites were counted by Miller reticule technique and correlation between gametocytaemia/parasitaemia and successful mosquito infection was studied.A weak but significant correlation was found between patient blood gametocytaemia/parasitaemia and mosquito oocyst load. No correlation was observed between gametocytaemia/parasitaemia and oocyst infection rates, and between gametocyte sex ratio and oocyst load. When it came to development of the parasite in the mosquito, a strong positive correlation was observed between oocyst midgut levels and sporozoite infection rates, and between oocyst levels and salivary gland sporozoite loads. Kinetic studies showed that sporozoites appeared in the salivary gland as early as day 7, post-infection.This is the first study in India to carry out membrane-feeding experiments with wild An. stephensi and P. vivax. A wide range of mosquito infection loads and infection rates were observed, pointing to a strong interplay between parasite, vector and human factors. Most of the present observations are in agreement with feeding experiments conducted with P. vivax elsewhere in the world.
Co-reporter:Sreekanth Kokkonda; Xiaoyi Deng; Karen L. White; Jose M. Coteron; Maria Marco; Laura de las Heras; John White; Farah El Mazouni; Diana R. Tomchick; Krishne Manjalanagara; Kakali Rani Rudra; Gong Chen; Julia Morizzi; Eileen Ryan; Werner Kaminsky; Didier Leroy; María Santos Martínez-Martínez; Maria Belen Jimenez-Diaz; Santiago Ferrer Bazaga; Iñigo Angulo-Barturen; David Waterson; Jeremy N. Burrows; Dave Matthews; Susan A. Charman; Margaret A. Phillips
Journal of Medicinal Chemistry 2016 Volume 59(Issue 11) pp:5416-5431
Publication Date(Web):April 29, 2016
DOI:10.1021/acs.jmedchem.6b00275
Malaria persists as one of the most devastating global infectious diseases. The pyrimidine biosynthetic enzyme dihydroorotate dehydrogenase (DHODH) has been identified as a new malaria drug target, and a triazolopyrimidine-based DHODH inhibitor 1 (DSM265) is in clinical development. We sought to identify compounds with higher potency against Plasmodium DHODH while showing greater selectivity toward animal DHODHs. Herein we describe a series of novel triazolopyrimidines wherein the p-SF5-aniline was replaced with substituted 1,2,3,4-tetrahydro-2-naphthyl or 2-indanyl amines. These compounds showed strong species selectivity, and several highly potent tetrahydro-2-naphthyl derivatives were identified. Compounds with halogen substitutions displayed sustained plasma levels after oral dosing in rodents leading to efficacy in the P. falciparum SCID mouse malaria model. These data suggest that tetrahydro-2-naphthyl derivatives have the potential to be efficacious for the treatment of malaria, but due to higher metabolic clearance than 1, they most likely would need to be part of a multidose regimen.
Co-reporter:Shiva Kumar;Kalyanaraman Krishnamoorthy;Devaraja G. Mudeppa
Acta Crystallographica Section F 2015 Volume 71( Issue 5) pp:600-608
Publication Date(Web):
DOI:10.1107/S2053230X1500549X

The most severe form of malaria is caused by the obligate parasite Plasmodium falciparum. Orotate phosphoribosyltransferase (OPRTase) is the fifth enzyme in the de novo pyrimidine-synthesis pathway in the parasite, which lacks salvage pathways. Among all of the malaria de novo pyrimidine-biosynthesis enzymes, the structure of P. falciparum OPRTase (PfOPRTase) was the only one unavailable until now. PfOPRTase that could be crystallized was obtained after some low-complexity sequences were removed. Four catalytic dimers were seen in the asymmetic unit (a total of eight polypeptides). In addition to revealing unique amino acids in the PfOPRTase active sites, asymmetric dimers in the larger structure pointed to novel parasite-specific protein–protein interactions that occlude the catalytic active sites. The latter could potentially modulate PfOPRTase activity in parasites and possibly provide new insights for blocking PfOPRTase functions.

Co-reporter:Alka Marwaha ; John White ; Farah El_Mazouni ; Sharon A Creason ; Sreekanth Kokkonda ; Frederick S. Buckner ; Susan A. Charman ; Margaret A. Phillips
Journal of Medicinal Chemistry 2012 Volume 55(Issue 17) pp:7425-7436
Publication Date(Web):August 9, 2012
DOI:10.1021/jm300351w
Plasmodium falciparum causes approximately 1 million deaths annually. However, increasing resistance imposes a continuous threat to existing drug therapies. We previously reported a number of potent and selective triazolopyrimidine-based inhibitors of P. falciparum dihydroorotate dehydrogenase that inhibit parasite in vitro growth with similar activity. Lead optimization of this series led to the recent identification of a preclinical candidate, showing good activity against P. falciparum in mice. As part of a backup program around this scaffold, we explored heteroatom rearrangement and substitution in the triazolopyrimidine ring and have identified several other ring configurations that are active as PfDHODH inhibitors. The imidazo[1,2-a]pyrimidines were shown to bind somewhat more potently than the triazolopyrimidines depending on the nature of the amino aniline substitution. DSM151, the best candidate in this series, binds with 4-fold better affinity (PfDHODH IC50 = 0.077 μM) than the equivalent triazolopyrimidine and suppresses parasites in vivo in the Plasmodium berghei model.
Co-reporter:Ramesh Gujjar ; Farah El Mazouni ; Karen L. White ; John White ; Sharon Creason ; David M. Shackleford ; Xiaoyi Deng ; William N. Charman ; Ian Bathurst ; Jeremy Burrows ; David M. Floyd ; David Matthews ; Frederick S. Buckner ; Susan A. Charman ; Margaret A. Phillips
Journal of Medicinal Chemistry 2011 Volume 54(Issue 11) pp:3935-3949
Publication Date(Web):April 25, 2011
DOI:10.1021/jm200265b
Malaria is one of the leading causes of severe infectious disease worldwide; yet, our ability to maintain effective therapy to combat the illness is continually challenged by the emergence of drug resistance. We previously reported identification of a new class of triazolopyrimidine-based Plasmodium falciparum dihydroorotate dehydrogenase (PfDHODH) inhibitors with antimalarial activity, leading to the discovery of a new lead series and novel target for drug development. Active compounds from the series contained a triazolopyrimidine ring attached to an aromatic group through a bridging nitrogen atom. Herein, we describe systematic efforts to optimize the aromatic functionality with the goal of improving potency and in vivo properties of compounds from the series. These studies led to the identification of two new substituted aniline moieties (4-SF5-Ph and 3,5-Di-F-4-CF3-Ph), which, when coupled to the triazolopyrimidine ring, showed good plasma exposure and better efficacy in the Plasmodium berghei mouse model of the disease than previously reported compounds from the series.
Co-reporter:Ramesh Gujjar, Alka Marwaha, Farah El Mazouni, John White, Karen L. White, Sharon Creason, David M. Shackleford, Jeffrey Baldwin, William N. Charman, Frederick S. Buckner, Susan Charman, Pradipsinh K. Rathod and Margaret A. Phillips
Journal of Medicinal Chemistry 2009 Volume 52(Issue 7) pp:1864-1872
Publication Date(Web):March 18, 2009
DOI:10.1021/jm801343r
Plasmodium falciparum causes 1−2 million deaths annually. Yet current drug therapies are compromised by resistance. We previously described potent and selective triazolopyrimidine-based inhibitors of P. falciparum dihydroorotate dehydrogenase (PfDHODH) that inhibited parasite growth in vitro; however, they showed no activity in vivo. Here we show that lack of efficacy against P. berghei in mice resulted from a combination of poor plasma exposure and reduced potency against P. berghei DHODH. For compounds containing naphthyl (DSM1) or anthracenyl (DSM2), plasma exposure was reduced upon repeated dosing. Phenyl-substituted triazolopyrimidines were synthesized leading to identification of analogs with low predicted metabolism in human liver microsomes and which showed prolonged exposure in mice. Compound 21 (DSM74), containing p-trifluoromethylphenyl, suppressed growth of P. berghei in mice after oral administration. This study provides the first proof of concept that DHODH inhibitors can suppress Plasmodium growth in vivo, validating DHODH as a new target for antimalarial chemotherapy.
Co-reporter:Margaret A. Phillips ; Ramesh Gujjar ; Nicholas A. Malmquist ; John White ; Farah El Mazouni ; Jeffrey Baldwin
Journal of Medicinal Chemistry 2008 Volume 51(Issue 12) pp:3649-3653
Publication Date(Web):June 4, 2008
DOI:10.1021/jm8001026
A Plasmodium falciparum dihydroorotate dehydrogenase (PfDHODH) inhibitor that is potent (KI = 15 nM) and species-selective (>5000-fold over the human enzyme) was identified by high-throughput screening. The substituted triazolopyrimidine and its structural analogues were produced by an inexpensive three-step synthesis, and the series showed good association between PfDHODH inhibition and parasite toxicity. This study has identified the first nanomolar PfDHODH inhibitor with potent antimalarial activity in whole cells (EC50 = 79 nM).
Co-reporter:
Nature Structural and Molecular Biology 2003 10(5) pp:316-318
Publication Date(Web):
DOI:10.1038/nsb0503-316
The structure of Plasmodium falciparum dihydrofolate reductase−thymidylate synthase, a target of clinically established antimalarial drugs, reveals the nature of inhibitor binding, drug resistance and autologous gene repression, all of which influence species-specific drug sensitivity.
7-CHLORO-5-METHYL-2-(TRIFLUOROMETHYL)-[1,2,4]TRIAZOLO[1,5-A]PYRIMIDINE
2-Naphthalenamine,7-bromo-1,2,3,4-tetrahydro-
6-Bromo-1,2,3,4-tetrahydronaphthalen-2-amine