Co-reporter:Nobutaka Kurashige, Hirokazu Fuchida, Shigekazu Tabata, Shohei Uchinomiya, Akio Ojida
Bioorganic & Medicinal Chemistry Letters 2017 Volume 27, Issue 15(Issue 15) pp:
Publication Date(Web):1 August 2017
DOI:10.1016/j.bmcl.2017.05.069
We report the discovery of a highly reactive peptide tag for the specific cysteine conjugation of proteins. Screening of cysteine-containing peptides using ELISA-type screening yielded a 19-amino acid tag (DCPPPDDAADDAADDAADD), named DCP3 tag, which enabled the rapid and selective labeling of the tag-fused protein with a synthetic zinc complex on the surface of living cells.Download high-res image (75KB)Download full-size image
Co-reporter:Eriko Aoyama, Hirokazu Fuchida, Yuji Oshikawa, Shohei Uchinomiya and Akio Ojida
Chemical Communications 2016 vol. 52(Issue 49) pp:7715-7718
Publication Date(Web):24 May 2016
DOI:10.1039/C6CC03336A
A new glutathione (GSH)-responsive traceless tag that facilitates intracellular delivery of small molecule chemical probes has been developed.
Co-reporter:Yuji Oshikawa, Kazuyuki Furuta, Satoshi Tanaka, and Akio Ojida
Analytical Chemistry 2016 Volume 88(Issue 3) pp:1526
Publication Date(Web):January 21, 2016
DOI:10.1021/acs.analchem.5b04758
Mast cells secrete histamine upon degranulation triggered by various stimuli. Herein, we report the new detection method of mast cell degranulation using the fluorescent probe capable of detection of the released histamine. The probe was designed as the Co(II) complex of a cyanine dye, which shows a turn-on fluorescence signal based on a histamine-induced coordination displacement mechanism. Fluorescence imaging using the cell surface-anchored fluorescent probe enabled the real-time detection of mast cell degranulation induced by various secretagogues.
Co-reporter:Ryosuke Kawagoe;Ippei Takashima;Dr. Kazuteru Usui;Anna Kanegae;Yusuke Ozawa ; Dr. Akio Ojida
ChemBioChem 2015 Volume 16( Issue 11) pp:1608-1615
Publication Date(Web):
DOI:10.1002/cbic.201500249
Abstract
We report the design and development of a fluorescent CdII ion complex that is capable of the ratiometric detection of H2S in living cells. This probe exploits the metal-ion-induced emission red shift resulting from direct contact between the aromatic ring of a fluorophore and a metal ion (i.e., arene–metal-ion or “AM” contact). The CdII complex displays a large emission blue shift upon interaction with H2S as the CdII-free ligand is released by the formation of cadmium sulfide. Screening of potential ligands and fluorophores led to the discovery of a pyronine-type probe, 6⋅CdII, that generated a sensitive and rapid ratio value change upon interaction with H2S, without interference from the glutathione that is abundant in the cell. The membrane-impermeable 6⋅CdII was successfully translocated into live cells by using an oligo-arginine peptide and pyrenebutylate as carriers. As such, 6⋅CdII was successfully applied to the ratiometric detection of both exogenous and endogenous H2S produced by the enzymes in living cells, thus demonstrating the utility of 6⋅CdII in biological fluorescence analysis.
Co-reporter:Ippei Takashima;Ryosuke Kawagoe;Dr. Itaru Hamachi;Dr. Akio Ojida
Chemistry - A European Journal 2015 Volume 21( Issue 5) pp:2038-2044
Publication Date(Web):
DOI:10.1002/chem.201405686
Abstract
The concomitant detection of two biological events facilitates the highly selective and sensitive analysis of specific biological functions. In this article, we report an AND logic-gate-type fluorescent probe that can concurrently sense two biological events in living cells: H2O2 accumulation and acidification. The probe exhibits a unique fluorescence sensing mechanism, in which a xanthene fluorophore is oxidatively transformed to a xanthone derivative by H2O2, thereby resulting in a clear dual-emission change. This transformation is significantly accelerated under weak acidic conditions, which enables the selective and sensitive detection of H2O2 production in an acidic cellular compartment. This unique sensing property was successfully applied to the ratiometric fluorescence imaging of autolysosome formation in selective mitochondrial autophagy (mitophagy), which highlights the utility of this novel probe in autophagy research.
Co-reporter:Ekkachai Kittiloespaisan, Ippei Takashima, Wansika Kiatpathomchai, Jirarut Wongkongkatep and Akio Ojida
Chemical Communications 2014 vol. 50(Issue 17) pp:2126-2128
Publication Date(Web):06 Dec 2013
DOI:10.1039/C3CC48101H
A fluorescence sensing system for inorganic pyrophosphate based on ligand exchange of the Ce(III) complex of a xanthene-type probe is developed. This sensing system is successfully applied to the fluorescence detection of polymerase-catalyzed DNA amplification using loop-mediated isothermal amplification.
Co-reporter:Ippei Takashima, Anna Kanegae, Manabu Sugimoto, and Akio Ojida
Inorganic Chemistry 2014 Volume 53(Issue 14) pp:7080-7082
Publication Date(Web):July 9, 2014
DOI:10.1021/ic500980j
In this Communication, we report on the development of a ratiometric fluorescent probe for silver(I) ions (AgI) based on an arene–metal ion interaction. The probe selectively senses AgI among various metal ions with a large-emission red shift under aqueous conditions, enabling the selective ratiometric detection of AgI. X-ray crystallography and NMR analyses reveal that AgI comes into close contact with the fluorophore, which induces a large-emission red shift. The high sensing selectivity of the probe toward AgI might be attributable to the restricted rigid conformation of the cyclic aza crown ether, which exclusively binds AgI. In addition to AgI sensing, the AgI complex of the probe is also used for the ratiometric sensing of a cyanide anion (CN–), highlighting the utility of the reported probe in fluorescence sensing.
Co-reporter:Ikuko Takahira, Hirokazu Fuchida, Shigekazu Tabata, Naoya Shindo, Shohei Uchinomiya, Itaru Hamachi, Akio Ojida
Bioorganic & Medicinal Chemistry Letters 2014 Volume 24(Issue 13) pp:2855-2858
Publication Date(Web):1 July 2014
DOI:10.1016/j.bmcl.2014.04.096
Selective protein labeling with a small molecular probe is a versatile method for elucidating protein functions under live-cell conditions. In this Letter, we report the design of the binuclear Ni(II)–iminodiacetic acid (IDA) complex for selective recognition and covalent labeling of His-tag-fused proteins. We found that the Ni(II)–IDA complex 1-2Ni(II) binds to the His6-tag (HHHHHH) with a strong binding affinity (Kd = 24 nM), the value of which is 16-fold higher than the conventional Ni(II)–NTA complex (Kd = 390 nM). The strong binding affinity of the Ni(II)–IDA complex was successfully used in the covalent labeling and fluorescence bioimaging of a His-tag fused GPCR (G-protein coupled receptor) located on the surface of living cells.
Co-reporter:Ippei Takashima;Miyuki Kinoshita;Ryosuke Kawagoe;Saika Nakagawa;Dr. Manabu Sugimoto;Dr. Itaru Hamachi;Dr. Akio Ojida
Chemistry - A European Journal 2014 Volume 20( Issue 8) pp:2184-2192
Publication Date(Web):
DOI:10.1002/chem.201304181
Abstract
Non-coordinative interactions between a metal ion and the aromatic ring of a fluorophore can act as a versatile sensing mechanism for the detection of metal ions with a large emission change of fluorophores. We report the design of fluorescent probes based on arene–metal-ion interactions and their biological applications. This study found that various probes having different fluorophores and metal binding units displayed significant emission redshift upon complexation with metal ions, such as AgI, CdII, HgII, and PbII. X-ray crystallography of the complexes confirmed that the metal ions were held in close proximity to the fluorophore to form an arene–metal-ion interaction. Electronic structure calculations based on TDDFT offered a theoretical basis for the sensing mechanism, thus showing that metal ions electrostatically modulate the energy levels of the molecular orbitals of the fluorophore. A fluorescent probe was successfully applied to the ratiometric detection of the uptake of CdII ions and hydrogen sulfide (H2S) in living cells. These results highlight the utility of interactions between arene groups and metal ions in biological analyses.
Co-reporter:Yuji Oshikawa and Akio Ojida
Chemical Communications 2013 vol. 49(Issue 97) pp:11373-11375
Publication Date(Web):15 Oct 2013
DOI:10.1039/C3CC46824K
A fluorescence sensing system exploiting the large and finely tunable pKa shift of aliphatic amines was developed. The amine-containing fluorescent probes with distinct pKa values in a wide pH range were successfully applied to detect a variety of enzyme reactions with a large and real-time fluorescence enhancement.
Co-reporter:Yasutaka Kurishita, Takahiro Kohira, Akio Ojida, and Itaru Hamachi
Journal of the American Chemical Society 2012 Volume 134(Issue 45) pp:18779-18789
Publication Date(Web):October 25, 2012
DOI:10.1021/ja308754g
ATP and its derivatives (nucleoside polyphosphates (NPPs)) are implicated in many biological events, so their rapid and convenient detection is important. In particular, live cell detection of NPPs at specific local regions of cells could greatly contribute understanding of the complicated roles of NPPs. We report herein the design of two new fluorescent chemosensors that detect the dynamics of NPPs in specific regions of living cells. To achieve imaging of NPPs on plasma membrane surfaces (2-2Zn(II)), a lipid anchor was introduced into xanthene-based Zn(II) complex 1-2Zn(II), which was previously developed as a turn-on type fluorescent chemosensor for NPPs. Meanwhile, for subcellular imaging of ATP in mitochondria, we designed rhodamine-type Zn(II) complex 3-2Zn(II), which possesses a cationic pyronin ring instead of xanthene. Detailed spectroscopic studies revealed that 2-2Zn(II) and 3-2Zn(II) can sense NPPs with a several-fold increase of their fluorescence intensities through a sensing mechanism similar to 1-2Zn(II), involving binding-induced recovery of the conjugated form of the xanthene or pyronin ring. In live cell imaging, 2-2Zn(II) containing a lipid anchor selectively localized on the plasma membrane surface and detected the extracellular release of NPPs during cell necrosis induced by streptolysin O. On the other hand, rhodamine-type complex 3-2Zn(II) spontaneously localized at mitochondria inside cells, and sensed the local increase of ATP concentration during apoptosis. Multicolor images were obtained through simultaneous use of 2-2Zn(II) and 3-2Zn(II), allowing detection of the dynamics of ATP in different cellular compartments at the same time.
Co-reporter:Sho-hei Fujishima ; Ryosuke Yasui ; Takayuki Miki ; Akio Ojida ;Itaru Hamachi
Journal of the American Chemical Society 2012 Volume 134(Issue 9) pp:3961-3964
Publication Date(Web):February 21, 2012
DOI:10.1021/ja2108855
Chemistry-based protein labeling in living cells is undoubtedly useful for understanding natural protein functions and for biological/pharmaceutical applications. Here, we report a novel approach for endogenous membrane-bound protein labeling for both in vitro and live cell conditions. A moderately reactive alkyloxyacyl imidazole (AI) assisted by ligand-binding affinity (ligand-directed AI (LDAI)) chemistry allowed us to selectively modify natural proteins, such as dihydrofolate reductase (DHFR) and folate receptor (FR), neither of which could be efficiently labeled using the recently developed ligand-directed tosylate approach. It was clear that LDAI selectively labeled a single Lys(K32) in DHFR, proximal to the ligand-binding pocket. We also demonstrate that the fluorescein-labeled (endogenous, by LDAI) FR works as a fluorescent biosensor on the live KB cell surface, which allowed us to carry out unprecedented in situ kinetic analysis of ligand binding to FR.
Co-reporter:Yasutaka Kurishita ; Takahiro Kohira ; Akio Ojida ;Itaru Hamachi
Journal of the American Chemical Society 2010 Volume 132(Issue 38) pp:13290-13299
Publication Date(Web):September 2, 2010
DOI:10.1021/ja103615z
Ratiometric fluorescence sensing is a useful technique for the precise and quantitative analysis of biological events occurring under complex conditions, such as those inside cells. We report herein the design of new ratiometric chemosensors for nucleoside polyphosphates such as ATP that are based on binding-induced modulation of fluorescence resonance energy transfer (FRET) coupled with a turn-on fluorescence-sensing mechanism. We designed these new FRET-based ratiometric chemosensors by utilizing spectral overlap changes to modulate the FRET efficiency. Introduction of coumarin fluorophores as the FRET donors into a binuclear zinc complex as the FRET acceptor provided the ratiometric chemosensors. These chemosensors exhibited a clear dual-mission signal change upon binding with strong affinity (Kapp ≈ 106−107 M−1) to nucleoside polyphosphates in aqueous solution, whereas no detectable emission change was observed with monophosphates and phosphodiester species or various other anions. These chemosensors were used for real-time fluorescence monitoring of enzyme reactions such as saccharide synthesis by glycosyltransferase and phosphorylation by protein kinase, both of which involve nucleoside polyphosphates as substrates. The utility of ratiometric sensing by chemosensors was further demonstrated in a fluorescence-imaging study of the nucleoside polyphosphates inside living cells, wherein we ratiometrically visualized the stimulus-responsive concentration change of ATP, an indicator of the cellular energy level.
Co-reporter:Ekkachai Kittiloespaisan, Ippei Takashima, Wansika Kiatpathomchai, Jirarut Wongkongkatep and Akio Ojida
Chemical Communications 2014 - vol. 50(Issue 17) pp:NaN2128-2128
Publication Date(Web):2013/12/06
DOI:10.1039/C3CC48101H
A fluorescence sensing system for inorganic pyrophosphate based on ligand exchange of the Ce(III) complex of a xanthene-type probe is developed. This sensing system is successfully applied to the fluorescence detection of polymerase-catalyzed DNA amplification using loop-mediated isothermal amplification.
Co-reporter:Yuji Oshikawa and Akio Ojida
Chemical Communications 2013 - vol. 49(Issue 97) pp:NaN11375-11375
Publication Date(Web):2013/10/15
DOI:10.1039/C3CC46824K
A fluorescence sensing system exploiting the large and finely tunable pKa shift of aliphatic amines was developed. The amine-containing fluorescent probes with distinct pKa values in a wide pH range were successfully applied to detect a variety of enzyme reactions with a large and real-time fluorescence enhancement.
Co-reporter:Eriko Aoyama, Hirokazu Fuchida, Yuji Oshikawa, Shohei Uchinomiya and Akio Ojida
Chemical Communications 2016 - vol. 52(Issue 49) pp:NaN7718-7718
Publication Date(Web):2016/05/24
DOI:10.1039/C6CC03336A
A new glutathione (GSH)-responsive traceless tag that facilitates intracellular delivery of small molecule chemical probes has been developed.