Jianghong Rao

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Name: Rao, Jianghong
Organization: Stanford University School of Medicine , USA
Department: Department of Radiology
Title: Assistant Professor(PhD)
Co-reporter:Aiguo Song;Yunfeng Cheng;Jinghang Xie;Niaz Banaei
Chemical Science (2010-Present) 2017 vol. 8(Issue 11) pp:7669-7674
Publication Date(Web):2017/10/23
DOI:10.1039/C7SC02416A
This work reports a novel caging strategy for designing fluorogenic probes to detect the activity of β-lactamases. The caging strategy uses a thiophenyl linker connected to a fluorophore caged by a good leaving group—dinitrophenyl. The uncaging proceeds in two steps through the sulfa-releasing and subsequent intramolecular substitution. The length of the linker has been examined and optimized to maximize the rate of intramolecular reaction and thus the rate of fluorescence activation. Finally based on this strategy, we prepared a green fluorogenic probe CAT-7 and validated its selectivity for detecting metallo-carbapenemases (VIM-27, IMP-1, NDM-1) in carbapenem-resistant Enterobacteriaceae (CRE) lysates.
Co-reporter:Yiping Chen, Yunlei Xianyu, Jing Wu, Wenfu Zheng, Jianghong Rao, and Xingyu Jiang
Analytical Chemistry 2016 Volume 88(Issue 11) pp:5605
Publication Date(Web):May 5, 2016
DOI:10.1021/acs.analchem.6b01122
The illegal addition of β-lactamase (Bla) in milk to disguise β-lactam antibiotics has been a serious issue in the milk industry worldwide. Herein, we report a method for point-of-care detection of Bla based on a probe, Tokyo Green-tethered β-lactam (CDG-1), as a common substrate of various Blas (Bla A, B...) which can enzymatically convert CDG-1 (low fluorescence) to Tokyo Green (high fluorescence). This approach allows rapid screening of a broad spectrum of Blas in real milk samples within 15 min without any pretreatment. Combined with the immuno-magnetic separation, we achieved sensitive and quantitative detection of Bla (10–5 U/mL), which provides a universal platform for screening and determining Blas in complex samples with high efficiency and accuracy.
Co-reporter:Kanyi Pu;Jianguo Mei;Jesse V. Jokerst;Guosong Hong;Alexer L. Antaris;Niladri Chattopadhyay;Adam J. Shuhendler;Tadanori Kurosawa;Yan Zhou;Sanjiv S. Gambhir;Zhenan Bao
Advanced Materials 2015 Volume 27( Issue 35) pp:5184-5190
Publication Date(Web):
DOI:10.1002/adma.201502285
Co-reporter:Dr. Mikael Palner;Dr. Kanyi Pu;Shirley Shao; Jianghong Rao
Angewandte Chemie International Edition 2015 Volume 54( Issue 39) pp:11477-11480
Publication Date(Web):
DOI:10.1002/anie.201502736

Abstract

Materials with persistent luminescence are attractive for in vivo optical imaging since they have a long lifetime that allows the separation of excitation of fluorophores and image acquisition for time-delay imaging, thus eliminating tissue autofluorescence associated with fluorescence imaging. Persistently luminescent nanoparticles have previously been fabricated from toxic rare-earth metals. This work reports that nanoparticles made of the conjugated polymer MEH-PPV can generate luminescence persisting for an hour upon single excitation. A near-infrared dye was encapsulated in the conjugated polymer nanoparticle to successfully generate persistent near-infrared luminescence through resonance energy transfer. This new persistent luminescence nanoparticles have been demonstrated for optical imaging applications in living mice.

Co-reporter:Dr. Mikael Palner;Dr. Kanyi Pu;Shirley Shao; Jianghong Rao
Angewandte Chemie 2015 Volume 127( Issue 39) pp:11639-11642
Publication Date(Web):
DOI:10.1002/ange.201502736

Abstract

Materials with persistent luminescence are attractive for in vivo optical imaging since they have a long lifetime that allows the separation of excitation of fluorophores and image acquisition for time-delay imaging, thus eliminating tissue autofluorescence associated with fluorescence imaging. Persistently luminescent nanoparticles have previously been fabricated from toxic rare-earth metals. This work reports that nanoparticles made of the conjugated polymer MEH-PPV can generate luminescence persisting for an hour upon single excitation. A near-infrared dye was encapsulated in the conjugated polymer nanoparticle to successfully generate persistent near-infrared luminescence through resonance energy transfer. This new persistent luminescence nanoparticles have been demonstrated for optical imaging applications in living mice.

Co-reporter:Deju Ye, Adam J. Shuhendler, Prachi Pandit, Kimberly D. Brewer, Sui Seng Tee, Lina Cui, Grigory Tikhomirov, Brian Rutt and Jianghong Rao  
Chemical Science 2014 vol. 5(Issue 10) pp:3845-3852
Publication Date(Web):03 Jun 2014
DOI:10.1039/C4SC01392A
Non-invasive detection of caspase-3/7 activity in vivo has provided invaluable predictive information regarding tumor therapeutic efficacy and anti-tumor drug selection. Although a number of caspase-3/7 targeted fluorescence and positron emission tomography (PET) imaging probes have been developed, there is still a lack of gadolinium (Gd)-based magnetic resonance imaging (MRI) probes that enable high spatial resolution detection of caspase-3/7 activity in vivo. Here we employ a self-assembly approach and develop a caspase-3/7 activatable Gd-based MRI probe for monitoring tumor apoptosis in mice. Upon reduction and caspase-3/7 activation, the caspase-sensitive nano-aggregation MR probe (C-SNAM: 1) undergoes biocompatible intramolecular cyclization and subsequent self-assembly into Gd-nanoparticles (GdNPs). This results in enhanced r1 relaxivity—19.0 (post-activation) vs. 10.2 mM−1 s−1 (pre-activation) at 1 T in solution—and prolonged accumulation in chemotherapy-induced apoptotic cells and tumors that express active caspase-3/7. We demonstrate that C-SNAM reports caspase-3/7 activity by generating a significantly brighter T1-weighted MR signal compared to non-treated tumors following intravenous administration of C-SNAM, providing great potential for high-resolution imaging of tumor apoptosis in vivo.
Co-reporter:Kanyi Pu;Adam J. Shuhendler;Maija P. Valta;Lina Cui;Matthias Saar;Donna M. Peehl
Advanced Healthcare Materials 2014 Volume 3( Issue 8) pp:1292-1298
Publication Date(Web):
DOI:10.1002/adhm.201300534

Despite the pressing need to noninvasively monitor transplanted cells in vivo with fluorescence imaging, desirable fluorescent agents with rapid labeling capability, durable brightness, and ideal biocompatibility remain lacking. Here, phosphorylcholine-coated near-infrared (NIR) fluorescent semiconducting polymer nanoparticles (SPNs) are reported as a new class of rapid, efficient, and cytocompatible labeling nanoagents for in vivo cell tracking. The phosphorylcholine coating results in efficient and rapid endocytosis and allows the SPN to enter cells within 0.5 h in complete culture medium apparently independent of the cell type, while its NIR fluorescence leads to a tissue penetration depth of 0.5 cm. In comparison to quantum dots and Cy5.5, the SPN is tolerant to physiologically ubiquitous reactive oxygen species (ROS), resulting in durable fluorescence both in vitro and in vivo. These desirable physical and physiological properties of the SPN permit cell tracking of human renal cell carcinoma (RCC) cells in living mice at a lower limit of detection of 10 000 cells with no obvious alteration of cell phenotype after 12 d. SPNs thus can provide unique opportunities for optimizing cellular therapy and deciphering pathological processes as a cell tracking label.

Co-reporter:Deju Ye, Prachi Pandit, Paul Kempen, Jianguo Lin, Liqin Xiong, Robert Sinclair, Brian Rutt, and Jianghong Rao
Bioconjugate Chemistry 2014 Volume 25(Issue 8) pp:1526
Publication Date(Web):July 3, 2014
DOI:10.1021/bc500254g
Controlled self-assembly of small molecule gadolinium (Gd) complexes into nanoparticles (GdNPs) is emerging as an effective approach to design activatable magnetic resonance imaging (MRI) probes and amplify the r1 relaxivity. Herein, we employ a reduction-controlled macrocyclization reaction and self-assembly to develop a redox activated Gd-based MRI probe for sensing a reducing environment. Upon disulfide reduction at physiological conditions, an acyclic contrast agent 1 containing dual Gd-chelates undergoes intramolecular macrocyclization to form rigid and hydrophobic macrocycles, which subsequently self-assemble into GdNPs, resulting in a ∼60% increase in r1 relaxivity at 0.5 T. Probe 1 has high r1 relaxivity (up to 34.2 mM–1 s–1 per molecule at 0.5 T) upon activation, and also shows a high sensitivity and specificity for MR detection of thiol-containing biomolecules.
Co-reporter:Dr. Haibin Shi;Dr. Yunfeng Cheng;Dr. Kyung Hyun Lee;Dr. Robert F. Luo; Niaz Banaei; Jianghong Rao
Angewandte Chemie International Edition 2014 Volume 53( Issue 31) pp:8113-8116
Publication Date(Web):
DOI:10.1002/anie.201402012

Abstract

Reported herein is the design of fluorogenic probes specific for carbapenem-resistant Enterobacteriaceae (CRE) and they were designed based on stereochemically modified cephalosporin having a 6,7-trans configuration. Through experiments using recombinant β-lactamase enzymes and live bacterial species, these probes demonstrate the potential for use in the specific detection of carbapenemases, including metallo-β-lactamases in active bacterial pathogens.

Co-reporter:Dr. Yunfeng Cheng;Dr. Hexin Xie;Dr. Preeti Sule;Dr. Hany Hassounah; Edward A. Graviss; Ying Kong; Jeffrey D. Cirillo; Jianghong Rao
Angewandte Chemie International Edition 2014 Volume 53( Issue 35) pp:9360-9364
Publication Date(Web):
DOI:10.1002/anie.201405243

Abstract

Current methods for the detection of Mycobacterium tuberculosis (Mtb) are either time consuming or require expensive instruments and are thus are not suitable for point-of-care diagnosis. The design, synthesis, and evaluation of fluorogenic probes with high specificity for BlaC, a biomarker expressed by Mtb, are described. The fluorogenic probe CDG-3 is based on cephalosporin with substitutions at the 2 and 7 positions and it demonstrates over 120 000-fold selectivity for BlaC over TEM-1 Bla, the most common β-lactamase. CDG-3 can detect 10 colony-forming units of the attenuated Mycobacterium bovis strain BCG in human sputum in the presence of high levels of contaminating β-lactamases expressed by other clinically prevalent bacterial strains. In a trial with 50 clinical samples, CDG-3 detected tuberculosis with 90 % sensitivity and 73 % specificity relative to Mtb culture within one hour, thus demonstrating its potential as a low-cost point-of-care test for use in resource-limited areas.

Co-reporter:Dr. Haibin Shi;Dr. Yunfeng Cheng;Dr. Kyung Hyun Lee;Dr. Robert F. Luo; Niaz Banaei; Jianghong Rao
Angewandte Chemie 2014 Volume 126( Issue 31) pp:8251-8254
Publication Date(Web):
DOI:10.1002/ange.201402012

Abstract

Reported herein is the design of fluorogenic probes specific for carbapenem-resistant Enterobacteriaceae (CRE) and they were designed based on stereochemically modified cephalosporin having a 6,7-trans configuration. Through experiments using recombinant β-lactamase enzymes and live bacterial species, these probes demonstrate the potential for use in the specific detection of carbapenemases, including metallo-β-lactamases in active bacterial pathogens.

Co-reporter:Dr. Yunfeng Cheng;Dr. Hexin Xie;Dr. Preeti Sule;Dr. Hany Hassounah; Edward A. Graviss; Ying Kong; Jeffrey D. Cirillo; Jianghong Rao
Angewandte Chemie 2014 Volume 126( Issue 35) pp:9514-9518
Publication Date(Web):
DOI:10.1002/ange.201405243

Abstract

Current methods for the detection of Mycobacterium tuberculosis (Mtb) are either time consuming or require expensive instruments and are thus are not suitable for point-of-care diagnosis. The design, synthesis, and evaluation of fluorogenic probes with high specificity for BlaC, a biomarker expressed by Mtb, are described. The fluorogenic probe CDG-3 is based on cephalosporin with substitutions at the 2 and 7 positions and it demonstrates over 120 000-fold selectivity for BlaC over TEM-1 Bla, the most common β-lactamase. CDG-3 can detect 10 colony-forming units of the attenuated Mycobacterium bovis strain BCG in human sputum in the presence of high levels of contaminating β-lactamases expressed by other clinically prevalent bacterial strains. In a trial with 50 clinical samples, CDG-3 detected tuberculosis with 90 % sensitivity and 73 % specificity relative to Mtb culture within one hour, thus demonstrating its potential as a low-cost point-of-care test for use in resource-limited areas.

Co-reporter:Anca Dragulescu-Andrasi ; Sri-Rajasekhar Kothapalli ; Grigory A. Tikhomirov ; Jianghong Rao ;Sanjiv S. Gambhir
Journal of the American Chemical Society 2013 Volume 135(Issue 30) pp:11015-11022
Publication Date(Web):July 16, 2013
DOI:10.1021/ja4010078
Photoacoustic (PA) imaging is continuing to be applied for physiological imaging and more recently for molecular imaging of living subjects. Owing to its high spatial resolution in deep tissues, PA imaging holds great potential for biomedical applications and molecular diagnostics. There is however a lack of probes for targeted PA imaging, especially in the area of enzyme-activatable probes. Here we introduce a molecular probe, which upon proteolytic processing is retained at the site of enzyme activity and provides PA contrast. The probe oligomerizes via a condensation reaction and accumulates in cells and tumors that express the protease. We demonstrate that this probe reports furin and furin-like activity in cells and tumor models by generating a significantly higher PA signal relative to furin-deficient and nontarget controls. This probe could report enzyme activity in living subjects at depths significantly greater than fluorescence imaging probes and has potential for molecular imaging in deep tumors.
Co-reporter:Liqin Xiong, Bin Shen, Deepak Behera, Sanjiv S. Gambhir, Frederick T. Chin and Jianghong Rao  
Nanoscale 2013 vol. 5(Issue 8) pp:3253-3256
Publication Date(Web):19 Mar 2013
DOI:10.1039/C3NR00335C
We report a simple, efficient synthesis of novel 18F-labeled imaging agents based on YF3 nanoparticles. Targeting ligands and antitumor drug molecules can be introduced onto the YF3 nanoparticles in a one-pot synthesis. The 18F-labeling reaction proceeds in aqueous solutions at room temperature with excellent radiolabeling yields (>80%) in a very short time (5–10 min). 18F-labeled YF3 nanoparticles displayed high stability in mouse and human serum, and their application for mapping lymph nodes in live rats after local injection has also been demonstrated.
Co-reporter:Dr. Kanyi Pu;Dr. Adam J. Shuhendler; Jianghong Rao
Angewandte Chemie International Edition 2013 Volume 52( Issue 39) pp:10325-10329
Publication Date(Web):
DOI:10.1002/anie.201303420
Co-reporter:Sandra Chapman, Marina Dobrovolskaia, Keyvan Farahani, Andrew Goodwin, Amit Joshi, Hakho Lee, Thomas Meade, Martin Pomper, Krzysztof Ptak, Jianghong Rao, Ravi Singh, Srinivas Sridhar, Stephan Stern, Andrew Wang, John B. Weaver, Gayle Woloschak, Lily Yang
Nano Today 2013 Volume 8(Issue 5) pp:454-460
Publication Date(Web):October 2013
DOI:10.1016/j.nantod.2013.06.001
•We review limitations of current nanoparticle imaging probes including: biodistribution of nanoparticles, imaging very small tumors, immunology, toxicology.•We review hurdles on the road to the clinic such as regulatory considerations.•We also review the financial realities.•Finally, we identify the opportunities that exist in the development of nanoparticle imaging probes.Recent advances in molecular imaging and nanotechnology are providing new opportunities for biomedical imaging with great promise for the development of novel imaging agents. The unique optical, magnetic, and chemical properties of materials at the scale of nanometers allow the creation of imaging probes with better contrast enhancement, increased sensitivity, controlled biodistribution, better spatial and temporal information, multi-functionality and multi-modal imaging across MRI, PET, SPECT, and ultrasound. These features could ultimately translate to clinical advantages such as earlier detection, real time assessment of disease progression and personalized medicine. However, several years of investigation into the application of these materials to cancer research has revealed challenges that have delayed the successful application of these agents to the field of biomedical imaging. Understanding these challenges is critical to take full advantage of the benefits offered by nano-sized imaging agents. Therefore, this article presents the lessons learned and challenges encountered by a group of leading researchers in this field, and suggests ways forward to develop nanoparticle probes for cancer imaging.
Co-reporter:Dr. Kanyi Pu;Dr. Adam J. Shuhendler; Jianghong Rao
Angewandte Chemie 2013 Volume 125( Issue 39) pp:10515-10519
Publication Date(Web):
DOI:10.1002/ange.201303420
Co-reporter:Jongho Jeon, Kyung Hyun Lee and Jianghong Rao  
Chemical Communications 2012 vol. 48(Issue 80) pp:10034-10036
Publication Date(Web):24 Aug 2012
DOI:10.1039/C2CC34498J
Fluorogenic sulforhodamine–neomycin conjugates have been designed and synthesized for RNA tagging. Conjugates were fluorescently activated by binding to RNA aptamers and exhibited greater than 250–400 fold enhancement in binding affinity relative to corresponding unconjugated fluorophores.
Co-reporter:Jongho Jeon, Bin Shen, Liqin Xiong, Zheng Miao, Kyung Hyun Lee, Jianghong Rao, and Frederick T. Chin
Bioconjugate Chemistry 2012 Volume 23(Issue 9) pp:1902
Publication Date(Web):July 31, 2012
DOI:10.1021/bc300273m
An efficient method based on a rapid condensation reaction between 2-cyanobenzothiazole (CBT) and cysteine has been developed for 18F-labeling of N-terminal cysteine-bearing peptides and proteins. An 18F-labeled dimeric cRGD ([18F]CBTRGD2) has been synthesized with an excellent radiochemical yield (92% based on radio-HPLC conversion, 80% decay-corrected, and isolated yield) and radiochemical purity (>99%) under mild conditions using 18F-CBT, and shown good in vivo tumor targeting efficiency for PET imaging. The labeling strategy was also applied to the site-specific 18F-labeling of a protein, Renilla lucifierase (RLuc8) with a cysteine residue at its N-terminus. The protein labeling was achieved with 12% of decay-corrected radiochemical yield and more than 99% radiochemical purity. This strategy should provide a general approach for efficient and site-specific 18F-labeling of various peptides and proteins for in vivo molecular imaging applications.
Co-reporter:Andrew Razgulin, Nan Ma and Jianghong Rao  
Chemical Society Reviews 2011 vol. 40(Issue 7) pp:4186-4216
Publication Date(Web):09 May 2011
DOI:10.1039/C1CS15035A
Imaging of enzyme activity in living subjects promises many applications in both basic and translational researches from helping elucidate the enzyme function and mechanism in biology to better disease detection and monitoring, but the complexity and dynamics of enzymatic reactions in living systems present unique challenges for probe design. This critical review examines the approaches in recent literature to in vivo imaging of the activity of a variety of enzyme targets with an emphasis on the chemical perspective of probe design, structure and function. Strategies for designing enzyme-activated probes based on a variety of molecular scaffolds including small molecules, organic and inorganic nanoparticles, and genetically encoded proteins for commonly used molecular imaging modalities—whole body optical (fluorescence, bioluminescence) imaging, magnetic resonance imaging, and radionuclide-based tomographic imaging, are critically evaluated. Recent advances in combining multiple modalities to imaging enzyme activity in living subjects are also highlighted (255 references).
Co-reporter:Ke Zhan, Hexin Xie, Jessica Gall, Manlung Ma, Oliver Griesbeck, Ahmad Salehi, and Jianghong Rao
ACS Chemical Biology 2011 Volume 6(Issue 7) pp:692
Publication Date(Web):April 20, 2011
DOI:10.1021/cb100377m
A key regulator of receptor-mediated endocytosis, Rab5, plays a pivotal role in cargo receptor internalization, endosomal maturation, and transduction and degradation of internalized signaling molecules and recycling cargo receptor. Stressful conditions within cells lead to increased Rab5 activation, and increasing evidence correlates Rab5 activity abnormalities with certain diseases. Current antibody-based imaging methods cannot distinguish active Rab5 from total Rab5 population and provide dynamic information on magnitude and duration of Rab5 activation in cellular events and pathogenesis. We report here novel molecular imaging probes that specifically target GTP-bound Rab5 associated with the early endosome membrane in live cells and fixed mouse brain tissues. Our Rab5 activity fluorescent biosensor (RAFB) contains the Rab5 binding domain of the Rab5 effector Rabaptin 5, a fluorophore (a quantum dot or fluorescent dye) and a cell-penetrating peptide for live-cell delivery. The quantum dot conjugated RAFB was able to image the elevated Rab5 activity in both the cortex and hippocampi tissues of a Ts65Dn mouse. A prequenched RAFB based on fluorescence resonance energy transfer (FRET) can image cytosolic active Rab5 in single live cells. This novel method should enable imaging of the biological process in which Rab5 activity is regulated in various cellular systems.
Co-reporter:Zuyong Xia, Yun Xing, Jongho Jeon, Young-Pil Kim, Jessica Gall, Anca Dragulescu-Andrasi, Sanjiv S. Gambhir, and Jianghong Rao
ACS Chemical Biology 2011 Volume 6(Issue 10) pp:1117
Publication Date(Web):August 10, 2011
DOI:10.1021/cb200135e
We report here an immobilization strategy using a collagen binding protein to deliver and confine synthetic reporters to the extracellular microenvironment in vivo for noninvasively imaging the activity of targets in the microenvironment. We show that the immobilization of reporters on collagens in the local microenvironment is highly efficient and physiologically stable for repetitive, long-term imaging. By using this strategy we successfully developed an immobilized bioluminescent activatable reporter and a dual-modality reporter to map and quantitatively image the activity of extracellular matrix metalloproteinases (MMP) in tumor-bearing mice. The inhibition of MMP activity by chemical inhibitor was also demonstrated in living subjects. We further demonstrated the general applicability of this immobilization strategy by imaging MMP activity at the inflammation site in a mouse model. Our results show that the in vivo immobilization of reporters can be used as a general strategy for probing the local extracellular microenvironment.
Co-reporter:Dr. Deju Ye;Dr. Gaolin Liang;Man Lung Ma ; Jianghong Rao
Angewandte Chemie International Edition 2011 Volume 50( Issue 10) pp:2275-2279
Publication Date(Web):
DOI:10.1002/anie.201006140
Co-reporter:Dr. Gaolin Liang;Dr. John Ronald;Dr. Yuanxin Chen;Dr. Deju Ye;Dr. Prachi Pit;Man Lung Ma; Brian Rutt; Jianghong Rao
Angewandte Chemie International Edition 2011 Volume 50( Issue 28) pp:6283-6286
Publication Date(Web):
DOI:10.1002/anie.201007018
Co-reporter:Dr. Deju Ye;Dr. Gaolin Liang;Man Lung Ma ; Jianghong Rao
Angewandte Chemie 2011 Volume 123( Issue 10) pp:2323-2327
Publication Date(Web):
DOI:10.1002/ange.201006140
Co-reporter:Dr. Gaolin Liang;Dr. John Ronald;Dr. Yuanxin Chen;Dr. Deju Ye;Dr. Prachi Pit;Man Lung Ma; Brian Rutt; Jianghong Rao
Angewandte Chemie 2011 Volume 123( Issue 28) pp:6407-6410
Publication Date(Web):
DOI:10.1002/ange.201007018
Co-reporter:Nan Ma ; Ann F. Marshall
Journal of the American Chemical Society 2010 Volume 132(Issue 20) pp:6884-6885
Publication Date(Web):May 4, 2010
DOI:10.1021/ja101378g
A new strategy based on biomineralization is presented to rationally tune the emission wavelength of luciferase. In this study luciferase (Luc8) was used as a template to direct the synthesis of near-infrared (NIR) light emitting PbS quantum dots (QDs) at ambient conditions to form a Luc8−PbS nanocomplex. The as-synthesized PbS QDs exhibited photoluminescence in the range of 800−1050 nm, and the Luc8 enzyme remained active within the Luc8−PbS complex. Upon the addition of the substrate coelenterazine, the energy produced by Luc8 was nonradiatively transferred to PbS QDs via bioluminescence resonance energy transfer (BRET) and enabled the complex to emit NIR light. This is the first study to form dual functional bioinorganic hybrid nanostructures via active enzyme-templated synthesis of inorganic nanomaterials.
Co-reporter:Young-Pil Kim, Weston L. Daniel, Zuyong Xia, Hexin Xie, Chad A. Mirkin and Jianghong Rao  
Chemical Communications 2010 vol. 46(Issue 1) pp:76-78
Publication Date(Web):12 Oct 2009
DOI:10.1039/B915612G
This communication reports the use of click chemistry to site-specifically conjugate bioluminescent Renilla luciferase proteins to gold nanoparticles (Au NPs) for sensing protease activity. The bioluminescent emission from luciferase was efficiently quenched by Au NPs, but significantly recovered after the proteolytic cleavage.
Co-reporter:Jungjoon Lee, Kyung Hyun Lee, Jongho Jeon, Anca Dragulescu-Andrasi, Fei Xiao, and Jianghong Rao
ACS Chemical Biology 2010 Volume 5(Issue 11) pp:1065
Publication Date(Web):September 1, 2010
DOI:10.1021/cb1001894
We report here a new small molecule fluorogen and RNA aptamer pair for RNA labeling. The small-molecule fluorogen is designed on the basis of fluorescently quenched sulforhodamine dye. The SELEX (Systematic Evolution of Ligands by EXponential enrichment) procedure and fluorescence screening in E. coli have been applied to discover the aptamer that can specifically activate the fluorogen with micromolar binding affinity. The systematic mutation and truncation study on the aptamer structure determined the minimum binding domain of the aptamer. A series of rationally modified fluorogen analogues have been made to probe the interacting groups of fluorogen with the aptamer. These results led to the design of a much improved fluorogen ASR 7 that displayed a 33-fold increase in the binding affinity for the selected aptamer in comparison to the original ASR 1 and an 88-fold increase in the fluorescence emission after the aptamer binding. This study demonstrates the value of combining in vitro SELEX and E. coli fluorescence screening with rational modifications in discovering and optimizing new fluorogen−RNA aptamer labeling pairs.
Co-reporter:Ying Kong;Hequan Yao;Hongjun Ren;Selvakumar Subbian;Suat L. G. Cirillo;James C. Sacchettini;Jeffrey D. Cirillo;
Proceedings of the National Academy of Sciences 2010 107(27) pp:12239-12244
Publication Date(Web):June 21, 2010
DOI:10.1073/pnas.1000643107
The slow growth rate and genetic intractability of tubercle bacilli has hindered progress toward understanding tuberculosis, one of the most frequent causes of death worldwide. We overcame this roadblock through development of near-infrared (NIR) fluorogenic substrates for β-lactamase, an enzyme expressed by tubercle bacilli, but not by their eukaryotic hosts, to allow real-time imaging of pulmonary infections and rapid quantification of bacteria in living animals by a strategy called reporter enzyme fluorescence (REF). This strategy has a detection limit of 6 ± 2 × 102 colony-forming units (CFU) of bacteria with the NIR substrate CNIR5 in only 24 h of incubation in vitro, and as few as 104 CFU in the lungs of live mice. REF can also be used to differentiate infected from uninfected macrophages by using confocal microscopy and fluorescence activated cell sorting. Mycobacterium tuberculosis and the bacillus Calmette–Guérin can be tracked directly in the lungs of living mice without sacrificing the animals. Therapeutic efficacy can also be evaluated through loss of REF signal within 24 h posttreatment by using in vitro whole-bacteria assays directly in living mice. We expect that rapid quantification of bacteria within tissues of a living host and in the laboratory is potentially transformative for tuberculosis virulence studies, evaluation of therapeutics, and efficacy of vaccine candidates. This is a unique use of an endogenous bacterial enzyme probe to detect and image tubercle bacilli that demonstrates REF is likely to be useful for the study of many bacterial infections.
Co-reporter:Anca Dragulescu-Andrasi, Gaolin Liang and Jianghong Rao
Bioconjugate Chemistry 2009 Volume 20(Issue 8) pp:1660
Publication Date(Web):July 31, 2009
DOI:10.1021/bc9002508
Furin, a proprotein convertases family endoprotease, processes numerous physiological substrates and is overexpressed in cancer and inflammatory conditions. Noninvasive imaging of furin activity will offer a valuable tool to probe furin function over the course of tumor growth and migration in the same animals in real time and directly assess the inhibition efficacy of drugs in vivo. Here, we report successful bioluminescence imaging of furin activity in xenografted MBA-MB-468 breast cancer tumors in mice with bioluminogenic probes. The probes are conjugates of furin substrate, a consensus amino acid motif R-X-K/R-R (X, any amino acid), with the firefly luciferase substrate d-aminoluciferin. In the presence of the luciferase reporter, the probes are unable to produce bioluminescent emission without furin activation. Blocking experiments with a furin inhibitor and control experiments with a scrambled probe showed that the bioluminescence emission in the presence of firefly luciferase is furin-dependent and specific. After furin activation, a 30-fold increase in the bioluminescent emission was observed in vitro, and on average, a 7−8-fold contrast between the probe and control was seen in the same tumor xenografts in mice. Direct imaging of furin activity may facilitate the study of furin function in tumorigenicity and the discovery of new drugs for furin-targeted cancer therapy.
Co-reporter:Hongjun Ren Dr.;Fei Xiao;Ke Zhan;Young-Pil Kim;Hexin Xie;Zuyong Xia
Angewandte Chemie International Edition 2009 Volume 48( Issue 51) pp:9658-9662
Publication Date(Web):
DOI:10.1002/anie.200903627
Co-reporter:Hongjun Ren Dr.;Fei Xiao;Ke Zhan;Young-Pil Kim;Hexin Xie;Zuyong Xia
Angewandte Chemie 2009 Volume 121( Issue 51) pp:9838-9842
Publication Date(Web):
DOI:10.1002/ange.200903627
Co-reporter:Zuyong Xia, Yun Xing, Min-Kyung So, Ai Leen Koh, Robert Sinclair and Jianghong Rao
Analytical Chemistry 2008 Volume 80(Issue 22) pp:8649
Publication Date(Web):October 15, 2008
DOI:10.1021/ac801562f
We report here a protease sensing nanoplatform based on semiconductor nanocrystals or quantum dots (QDs) and bioluminescence resonance energy transfer (QD-BRET) to detect the protease activity in complex biological samples. These nanosensors consist of bioluminescent proteins as the BRET donor, quantum dots as the BRET acceptor, and protease substrates sandwiched between the two as a sensing group. An intein-mediated conjugation strategy was developed for site-specific conjugation of proteins to QDs in preparing these QD nanosensors. In this traceless ligation, the intein itself is spliced out and excluded from the final conjugation product. With this method, we have synthesized a series of QD nanosensors for highly sensitive detection of an important class of protease matrix metalloproteinase (MMP) activity. We demonstrated that these nanosensors can detect the MMP activity in buffers and in mouse serum with the sensitivity to a few nanograms per milliliter and secreted proteases by tumor cells. The suitability of these nanosensors for a multiplex protease assay has also been shown.
Co-reporter:Min-Kyung So ;Gayatri Gowrishankar  Dr.;Sumitaka Hasegawa Dr.;June-Key Chung
ChemBioChem 2008 Volume 9( Issue 16) pp:2682-2691
Publication Date(Web):
DOI:10.1002/cbic.200800370

Abstract

Noninvasive imaging of specific mRNAs in living subjects promises numerous biological and medical applications. Common strategies use fluorescently or radioactively labelled antisense probes to detect target mRNAs through a hybridization mechanism, but have met with limited success in living animals. Here we present a novel molecular imaging approach based on the group I intron of Tetrahymena thermophila for imaging mRNA molecules in vivo. Engineered trans-splicing ribozyme reporters contain three domains, each of which is designed for targeting, splicing, and reporting. They can transduce the target mRNA into a reporter mRNA, leading to the production of reporter enzymes that can be noninvasively imaged in vivo. We have demonstrated this ribozyme-mediated RNA imaging method for imaging a mutant p53 mRNA both in single cells and noninvasively in living mice. After optimization, the ribozyme reporter increases contrast for the transiently expressed target by 180-fold, and by ten-fold for the stably expressed target. siRNA-mediated specific gene silencing of p53 expression has been successfully imaged in real time in vivo. This new ribozyme-based RNA reporter system should open up new avenues for in vivo RNA imaging and direct imaging of siRNA inhibition.

Co-reporter:Jianghong Rao
ACS Nano 2008 Volume 2(Issue 10) pp:1984
Publication Date(Web):October 28, 2008
DOI:10.1021/nn800669n
The scaffold of nanoparticles (broadly defined as having a size range of 1−100 nm) presents a convenient platform to incorporate multiple functionalities into one single particle for cancer imaging and therapeutics. Whether hollow inside or not, a single nanoparticle can encapsulate a large payload of imaging probes, anticancer drug molecules, or both. On the surface, tumor-specific targeting molecules (e.g., receptor-binding ligands or antibodies) may be immobilized to facilitate active tumor targeting and drug delivery. This versatile nanoplatform promises more efficient delivery of payloads to tumors for improving cancer detection and treatment.
Co-reporter:Gayatri Gowrishankar and Jianghong Rao  
Molecular BioSystems 2007 vol. 3(Issue 5) pp:301-307
Publication Date(Web):21 Feb 2007
DOI:10.1039/B617574K
Ribozymes are RNA molecules capable of associating with other RNA molecules through base-pairing and catalyzing various reactions involving phosphate group transfer. Of particular interest to us is the well known ribozyme from Tetrahymena thermophila capable of catalyzing RNA splicing in eukaryotic systems, chiefly because of its potential use as a gene therapy agent. In this article we review the progress made towards visualizing the RNA splicing mediated by the Tetrahymena ribozyme in single living mammalian cells with the β-lactamase reporter system and highlight the development made in imaging RNA splicing with the luciferase reporter system in living animals.
Co-reporter:Hequan Yao Dr.;Min-kyung So
Angewandte Chemie 2007 Volume 119(Issue 37) pp:
Publication Date(Web):3 AUG 2007
DOI:10.1002/ange.200701931

Live-Reportage: Ein photoaktivierbares β-Lactam-D-Luciferin(Bluco)-Konjugat kann mithilfe eines zweistufigen enzymatischen Prozesses β-Lactamase-Aktivität in vivo abbilden. Diese neuartige bioluminogene Sonde sollte den Nachweis von β-Lactamase erleichtern und deren Anwendung als Reportersubstanz erweitern.

Co-reporter:Hequan Yao Dr.;Yan Zhang Dr.;Fei Xiao Dr.;Zuyong Xia Dr.
Angewandte Chemie 2007 Volume 119(Issue 23) pp:
Publication Date(Web):30 APR 2007
DOI:10.1002/ange.200700280

BRET als Erkennungsmerkmal: Quantenpunkt(QD)-Nanosensoren detektieren die Aktivität von Matrixmetalloprotease, indem sie die Effizienz des resonanten Biolumineszenzenergietransfers (BRET) zwischen dem QD und einem biolumineszierenden Fusionsprotein erfassen (siehe Schema; Luc8=Renilla-Luciferase; His×6=Hexahistidin-Marker).

Co-reporter:Hequan Yao Dr.;Min-kyung So
Angewandte Chemie International Edition 2007 Volume 46(Issue 37) pp:
Publication Date(Web):3 AUG 2007
DOI:10.1002/anie.200701931

Reporting live: A caged β-lactam–D-luciferin (Bluco) conjugate can image β-lactamase activity in vivo through a two-step enzymatic process. This novel bioluminogenic probe should facilitate the detection of β-lactamase and widen its applications as a reporter.

Co-reporter:Hequan Yao Dr.;Yan Zhang Dr.;Fei Xiao Dr.;Zuyong Xia Dr.
Angewandte Chemie International Edition 2007 Volume 46(Issue 23) pp:
Publication Date(Web):30 APR 2007
DOI:10.1002/anie.200700280

Sensing by BRET: Quantum dot (QD) nanosensors can detect the activity of matrix metalloproteinases by measuring the bioluminescence resonance energy transfer (BRET) efficiency between the QDs and a bioluminescent fusion protein (see scheme; Luc8=Renilla luciferase; His×6=six-histidine tag).

Co-reporter:Anca Dragulescu-Andrasi Dr.
ChemBioChem 2007 Volume 8(Issue 10) pp:
Publication Date(Web):10 MAY 2007
DOI:10.1002/cbic.200700158

Color coded. A fluorogenic probe undergoes a spectral change when it reacts with its target enzyme, β-galactosidase. This enables real-time tracking of the labeling process in live cells.

Co-reporter:
Nature Biotechnology 2006 24(3) pp:339-343
Publication Date(Web):26 February 2006
DOI:10.1038/nbt1188
Fluorescent semiconductor quantum dots hold great potential for molecular imaging in vivo1, 2, 3, 4, 5. However, the utility of existing quantum dots for in vivo imaging is limited because they require excitation from external illumination sources to fluoresce, which results in a strong autofluorescence background and a paucity of excitation light at nonsuperficial locations. Here we present quantum dot conjugates that luminesce by bioluminescence resonance energy transfer in the absence of external excitation. The conjugates are prepared by coupling carboxylate-presenting quantum dots to a mutant of the bioluminescent protein Renilla reniformis luciferase. We show that the conjugates emit long-wavelength (from red to near-infrared) bioluminescent light in cells and in animals, even in deep tissues, and are suitable for multiplexed in vivo imaging. Compared with existing quantum dots, self-illuminating quantum dot conjugates have greatly enhanced sensitivity in small animal imaging, with an in vivo signal-to-background ratio of > 103 for 5 pmol of conjugate.
Co-reporter:Sumitaka Hasegawa Dr.;Gayatri Gowrishankar Dr.
ChemBioChem 2006 Volume 7(Issue 6) pp:
Publication Date(Web):24 MAY 2006
DOI:10.1002/cbic.200690016
Co-reporter:Sumitaka Hasegawa Dr.;Gayatri Gowrishankar Dr.
ChemBioChem 2006 Volume 7(Issue 6) pp:
Publication Date(Web):3 MAY 2006
DOI:10.1002/cbic.200600061

ATetrahymenagroup I intron ribozyme reporter was split into two halves, and, in the presence of the target mRNA, the split reporter assembled into an active complex that trans-spliced and produced a reporter enzyme. We show that this split reporter can sense tumor-suppressor p53 mutant mRNA in mammalian cells. This system may open up new avenues for detecting and imaging RNA molecules in vivo.

Co-reporter:Yan Zhang Dr.;Min-kyung So;Andreas M. Loening;Hequan Yao Dr.;Sanjiv S. Gambhir
Angewandte Chemie International Edition 2006 Volume 45(Issue 30) pp:
Publication Date(Web):29 JUN 2006
DOI:10.1002/anie.200601197

On the dot: A genetically engineered haloalkane dehalogenase was used to conjugate Renilla luciferase to quantum dots (see picture). The quantum dots can emit light through bioluminescence resonance energy transfer (BRET). This specific conjugation occurs upon simple mixing under mild conditions, and may be applied for specific in vivo labeling of proteins with quantum dots for imaging.

Co-reporter:Yan Zhang Dr.;Min-kyung So;Andreas M. Loening;Hequan Yao Dr.;Sanjiv S. Gambhir
Angewandte Chemie 2006 Volume 118(Issue 30) pp:
Publication Date(Web):29 JUN 2006
DOI:10.1002/ange.200601197

Auf den Punkt: Mithilfe einer gentechnisch hergestellten Halogenalkan-Dehalogenase wurde Renilla-Luciferase an Quantenpunkte konjugiert (siehe Bild), die dann über einen resonanten Biolumineszenzenergietransfer (BRET) Licht emittieren können. Die spezifische Konjugation gelingt durch einfaches Mischen unter milden Bedingungen und eignet sich möglicherweise für die spezifische In-vivo-Markierung von Proteinen mit Quantenpunkten für Bildgebungsverfahren.

Co-reporter:Zuyong Xia, Jianghong Rao
Current Opinion in Biotechnology (February 2009) Volume 20(Issue 1) pp:37-44
Publication Date(Web):1 February 2009
DOI:10.1016/j.copbio.2009.01.001
Bioluminescence resonance energy transfer (BRET) operates with biochemical energy generated by bioluminescent proteins to excite fluorophores and offers additional advantages over fluorescence energy transfer (FRET) for in vivo imaging and biosensing. While fluorescent proteins are frequently used as BRET acceptors, both small molecule dyes and nanoparticles can also serve as acceptor fluorophores. Semiconductor fluorescent nanocrystals or quantum dots (QDs) are particularly well suited for use as BRET acceptors due to their high quantum yields, large Stokes shifts and long wavelength emission. This review examines the potential of QDs for BRET-based bioassays and imaging, and highlights examples of QD–BRET for biosensing and imaging applications. Future development of new BRET acceptors should further expand the multiplexing capability of BRET and improve its applicability and sensitivity for in vivo imaging applications.
Co-reporter:Jianghong Rao, Anca Dragulescu-Andrasi, Hequan Yao
Current Opinion in Biotechnology (February 2007) Volume 18(Issue 1) pp:17-25
Publication Date(Web):1 February 2007
DOI:10.1016/j.copbio.2007.01.003
In vivo fluorescence imaging uses a sensitive camera to detect fluorescence emission from fluorophores in whole-body living small animals. To overcome the photon attenuation in living tissue, fluorophores with long emission at the near-infrared (NIR) region are generally preferred, including widely used small indocarbocyanine dyes. The list of NIR probes continues to grow with the recent addition of fluorescent organic, inorganic and biological nanoparticles. Recent advances in imaging strategies and reporter techniques for in vivo fluorescence imaging include novel approaches to improve the specificity and affinity of the probes and to modulate and amplify the signal at target sites for enhanced sensitivity. Further emerging developments are aiming to achieve high-resolution, multimodality and lifetime-based in vivo fluorescence imaging.
Co-reporter:Andrew Razgulin, Nan Ma and Jianghong Rao
Chemical Society Reviews 2011 - vol. 40(Issue 7) pp:NaN4216-4216
Publication Date(Web):2011/05/09
DOI:10.1039/C1CS15035A
Imaging of enzyme activity in living subjects promises many applications in both basic and translational researches from helping elucidate the enzyme function and mechanism in biology to better disease detection and monitoring, but the complexity and dynamics of enzymatic reactions in living systems present unique challenges for probe design. This critical review examines the approaches in recent literature to in vivo imaging of the activity of a variety of enzyme targets with an emphasis on the chemical perspective of probe design, structure and function. Strategies for designing enzyme-activated probes based on a variety of molecular scaffolds including small molecules, organic and inorganic nanoparticles, and genetically encoded proteins for commonly used molecular imaging modalities—whole body optical (fluorescence, bioluminescence) imaging, magnetic resonance imaging, and radionuclide-based tomographic imaging, are critically evaluated. Recent advances in combining multiple modalities to imaging enzyme activity in living subjects are also highlighted (255 references).
Co-reporter:Jongho Jeon, Kyung Hyun Lee and Jianghong Rao
Chemical Communications 2012 - vol. 48(Issue 80) pp:NaN10036-10036
Publication Date(Web):2012/08/24
DOI:10.1039/C2CC34498J
Fluorogenic sulforhodamine–neomycin conjugates have been designed and synthesized for RNA tagging. Conjugates were fluorescently activated by binding to RNA aptamers and exhibited greater than 250–400 fold enhancement in binding affinity relative to corresponding unconjugated fluorophores.
Co-reporter:Young-Pil Kim, Weston L. Daniel, Zuyong Xia, Hexin Xie, Chad A. Mirkin and Jianghong Rao
Chemical Communications 2010 - vol. 46(Issue 1) pp:NaN78-78
Publication Date(Web):2009/10/12
DOI:10.1039/B915612G
This communication reports the use of click chemistry to site-specifically conjugate bioluminescent Renilla luciferase proteins to gold nanoparticles (Au NPs) for sensing protease activity. The bioluminescent emission from luciferase was efficiently quenched by Au NPs, but significantly recovered after the proteolytic cleavage.
Co-reporter:Deju Ye, Adam J. Shuhendler, Prachi Pandit, Kimberly D. Brewer, Sui Seng Tee, Lina Cui, Grigory Tikhomirov, Brian Rutt and Jianghong Rao
Chemical Science (2010-Present) 2014 - vol. 5(Issue 10) pp:NaN3852-3852
Publication Date(Web):2014/06/03
DOI:10.1039/C4SC01392A
Non-invasive detection of caspase-3/7 activity in vivo has provided invaluable predictive information regarding tumor therapeutic efficacy and anti-tumor drug selection. Although a number of caspase-3/7 targeted fluorescence and positron emission tomography (PET) imaging probes have been developed, there is still a lack of gadolinium (Gd)-based magnetic resonance imaging (MRI) probes that enable high spatial resolution detection of caspase-3/7 activity in vivo. Here we employ a self-assembly approach and develop a caspase-3/7 activatable Gd-based MRI probe for monitoring tumor apoptosis in mice. Upon reduction and caspase-3/7 activation, the caspase-sensitive nano-aggregation MR probe (C-SNAM: 1) undergoes biocompatible intramolecular cyclization and subsequent self-assembly into Gd-nanoparticles (GdNPs). This results in enhanced r1 relaxivity—19.0 (post-activation) vs. 10.2 mM−1 s−1 (pre-activation) at 1 T in solution—and prolonged accumulation in chemotherapy-induced apoptotic cells and tumors that express active caspase-3/7. We demonstrate that C-SNAM reports caspase-3/7 activity by generating a significantly brighter T1-weighted MR signal compared to non-treated tumors following intravenous administration of C-SNAM, providing great potential for high-resolution imaging of tumor apoptosis in vivo.
Pyrrolo[3,4-c]pyrrole-1,4-dione, 3,6-bis(5-bromo-2-thienyl)-2,5-dihydro-2,5-bis(2-octyldodecyl)-
1,1'-[4,4,9,9-tetrakis(4-hexylphenyl)-4,9-dihydro-s-indaceno[1,2-b:5,6-b']dithiophene-2,7-diyl]bis[1,1,1-trimehtylstannyl]
Poly[2-methoxy-5-(2-ethylhexyloxy)-1,4-phenylenevinylene]
BIS(TRIHEXYLSILOXY)SILICON 2,3-NAPH- THALOCYANINE
1,1-DIETHYL-3-PHENYLIMINOTHIOUREA
Polyglycolic acid
5-FITC (ultra pure)
Caspase-3
Adriamycin