Co-reporter:Shin AndoJames Burrows, Kazunori Koide
Organic Letters 2017 Volume 19(Issue 5) pp:
Publication Date(Web):February 16, 2017
DOI:10.1021/acs.orglett.7b00141
MPC1001 is a potent anticancer natural product that contains a violaceic acid moiety. Herein we report the total synthesis of the natural product violaceic acid and its derivative. In this approach, a triazene-directed Ullman coupling proved to be highly effective. We converted the triazene to a hydroxy group by means of a palladium-catalyzed reaction. Treatment of the triazene with trifluoroacetic acid generated an arenediazonium ion that produced an aryl radical, leading to the protodediazoniation and a tricyclic product.
Co-reporter:Dianne Pham and Kazunori Koide
Natural Product Reports 2016 vol. 33(Issue 5) pp:637-647
Publication Date(Web):26 Jan 2016
DOI:10.1039/C5NP00110B
Covering: 1992 to 2015
The natural products FR901464, pladienolide, and herboxidiene were discovered as activators of reporter gene systems. Unexpectedly, these compounds target neither transcription nor translation; rather, they target splicing factor 3B subunit 1 of the spliceosome, causing changes in splicing patterns. All of them showed anticancer activity in a low nanomolar range. Since their discovery, these molecules have been used in a variety of biological applications.
Co-reporter:Upamanyu Basu and Kazunori Koide
Chemical Communications 2016 vol. 52(Issue 19) pp:3847-3849
Publication Date(Web):17 Feb 2016
DOI:10.1039/C5CC08289G
We previously developed Pittsburgh Green homoallyl ether to quantify trace ozone. Independently, problems were reported when the method was used for excess ozone. Here, we discuss the origin of the reported problems and demonstrate that when this method is used according to our previous report, no problems occur.
Co-reporter:Matthew P. Tracey, Dianne Pham and Kazunori Koide
Chemical Society Reviews 2015 vol. 44(Issue 14) pp:4769-4791
Publication Date(Web):23 Feb 2015
DOI:10.1039/C4CS00323C
Neither palladium nor platinum is an endogenous biological metal. Imaging palladium in biological samples, however, is becoming increasingly important because bioorthogonal organometallic chemistry involves palladium catalysis. In addition to being an imaging target, palladium has been used to fluorometrically image biomolecules. In these cases, palladium species are used as imaging-enabling reagents. This review article discusses these fluorometric methods. Platinum-based drugs are widely used as anticancer drugs, yet their mechanism of action remains largely unknown. We discuss fluorometric methods for imaging or quantifying platinum in cells or biofluids. These methods include the use of chemosensors to directly detect platinum, fluorescently tagging platinum-based drugs, and utilizing post-labeling to elucidate distribution and mode of action.
Co-reporter:Sara E. Smith, Jessica M. Williams, Shin Ando, and Kazunori Koide
Analytical Chemistry 2014 Volume 86(Issue 5) pp:2332
Publication Date(Web):February 14, 2014
DOI:10.1021/ac5001256
The concentration of human serum albumin (HSA) indicates the health state of individuals and is routinely measured by UV spectroscopy with bromocresol. However, this method tends to overestimate HSA, and more critically, depends highly on the timing, in seconds, of the measurements. Here, we report an analog of 2′,7′-dichlorofluorescein that can be used as a fluorescent sensor to quantify HSA in human sera. The accuracy of this new method proved superior to that of bromocresol when an international standard serum sample was analyzed. This method is more convenient than the bromocresol method because it allows for fluorescence measurements during a >15 min period. Colorimetric analysis was also performed to further investigate the effects of the binding of the sensor to HSA. These spectroscopic studies suggest that absorption and emission changes upon HSA binding may be due to the dehydration of the dye and/or stabilization of the tritylic cation species.
Co-reporter:Matthew P. Tracey and Kazunori Koide
Industrial & Engineering Chemistry Research 2014 Volume 53(Issue 38) pp:14565-14570
Publication Date(Web):September 9, 2014
DOI:10.1021/ie502003f
To limit environmental exposure of mercury species, government bodies restrict emissions of various environmental mercury sources to sub-parts per billion (ppb) levels. Current methods for detection of mercury are time-consuming and expensive and suffer from many drawbacks. Optical methods are in principle less intensive but have not yet been implemented for real-world applications because of a lack of sufficient sensitivity and robustness. We previously reported a fluorometric method for quantifying mercury ions based on the oxymercuration of a vinyl ether with a detection limit of 1 ppb, not meeting the requirement by government bodies. To fill the gap between our previous method and the governments’ restrictions, we have developed a method to enrich complex samples with mercury ions through the use of a recyclable thiol-based resin and the novel chemistry of mercury release. The combination of our previous fluorometric method and the new enrichment chemistry allowed the detection of 0.1 ppb mercury in a complex synthetic sample.
Co-reporter:Yang Gao, Sami Osman, and Kazunori Koide
ACS Medicinal Chemistry Letters 2014 Volume 5(Issue 8) pp:863
Publication Date(Web):June 23, 2014
DOI:10.1021/ml500025p
TMC-205 is a natural fungal metabolite with antiproliferative activity against cancer cell lines. The light- and air-sensitivity prevented in-depth exploitation of this novel indole derivative. Herein, we report the first synthesis of TMC-205. On the basis of its reactivity with reactive oxygen species, we developed air-stable analogues of TMC-205. These analogues are 2–8-fold more cytotoxic than TMC-205 against HCT-116 colon cancer cell line. Importantly, at noncytotoxic dose levels, these analogues activated the transcription of luciferase reporter gene driven by simian virus 40 promoter (SV40). Further, these small molecules also inhibit firefly luciferase, presumably by direct interaction.Keywords: firefly luciferase; gene activation; indole,; natural product; simian virus 40 promoter; TMC-205
Co-reporter:Yang Gao and Kazunori Koide
ACS Chemical Biology 2013 Volume 8(Issue 5) pp:895
Publication Date(Web):March 13, 2013
DOI:10.1021/cb300602j
The myeloid cell leukemia-1 (MCL1) gene encodes antiapoptotic Mcl-1L and proapoptotic Mcl-1S proteins. In cancer, the Mcl-1L/Mcl-1S ratio is very high, accounting for the antiapoptotic nature of cancer cells. As such, reducing this ratio can render the cancer cells prone to apoptosis. The Mcl-1L/Mcl-1S ratio is determined in the alternative pre-mRNA splicing step that is regulated by splicing factor 3B1 (SF3B1). Here, we report that meayamycin B, a potent inhibitor of SF3B1, reversed the dominant isoform from Mcl-1L to Mcl-1S at the mRNA and protein levels. The resulting proapoptotic cellular environment was further exploited; when meayamycin B was combined with Bcl-xL inhibitor ABT-737, the combination treatment triggered apoptosis in nonsmall cell lung cancer A549 and H1299 cells that were otherwise resistant to ABT-737. These results demonstrate that perturbation of the MCL1 splicing with small molecule inhibitors of SF3B1 provides a means to sensitize cancer cells toward Bcl-xL inhibitors.
Co-reporter:Jessica M. Williams and Kazunori Koide
Industrial & Engineering Chemistry Research 2013 Volume 52(Issue 25) pp:8612
Publication Date(Web):June 18, 2013
DOI:10.1021/ie400959z
Platinum-group metals are in increasing demand for industrial use. Herein, we present a fluorometric method for palladium detection that can be used to prioritize ore samples on site. The analyses of solid ore samples were sufficiently correlated with that of aqua regia extracts of the same ore samples. Twenty samples could be analyzed in parallel and more samples can be if so desired due to the high throughput nature of the assay method. Although the correlational study was performed after 90 min incubation, 30 min incubation was sufficient to obtain strong fluorescence signals (i.e., 1.5 min per sample). Given the visible nature of the green fluorescence and the procedural simplicity, palladium and coexisting platinum ores are identifiable in the field with the naked eye.
Co-reporter:Yang Gao; Andreas Vogt; Craig J. Forsyth; Kazunori Koide
ChemBioChem 2013 Volume 14( Issue 1) pp:49-52
Publication Date(Web):
DOI:10.1002/cbic.201200558
Co-reporter:Sami Osman, Kazunori Koide
Tetrahedron Letters 2012 Volume 53(Issue 49) pp:6637-6640
Publication Date(Web):5 December 2012
DOI:10.1016/j.tetlet.2012.09.035
One-pot procedures expedite organic synthesis but pose challenges in that many reagents must be compatible with each other. We discovered that the presence of nBu4NF hindered ruthenium-catalyzed olefin metathesis when nBu4NF-mediated desilylation and olefin metathesis were performed in one pot. This problem could be solved by the addition of (TMS)2O to remove fluoride anions in order to facilitate the ruthenium-catalyzed olefin metathesis.
Co-reporter:Kiyofumi Inamoto, Laura D. Campbell, Takayuki Doi, Kazunori Koide
Tetrahedron Letters 2012 Volume 53(Issue 25) pp:3147-3148
Publication Date(Web):20 June 2012
DOI:10.1016/j.tetlet.2012.04.043
We previously reported a Suzuki–Miyaura coupling in dimethyl carbonate without adding additional transition metals. Here, we show an analysis of the reaction mixture that revealed the presence of palladium using a fluorogenic Tsuji–Trost reaction.
Co-reporter:Michael P. Cook, Shin Ando, Kazunori Koide
Tetrahedron Letters 2012 Volume 53(Issue 39) pp:5284-5286
Publication Date(Web):26 September 2012
DOI:10.1016/j.tetlet.2012.07.084
We report a convenient method for the one-step synthesis of a fluorescein derivative under acidic conditions. Mechanistic studies indicate that the acid-promoted condensation of o-tolualdehyde and 4-chlororesorcinol to form the fluorescein derivative proceeds through a cyclization-oxidation pathway while an alternative oxidation–cyclization pathway remains possible.
Co-reporter:Dan Li;Laura D. Campbell;Brittany A. Austin ;Dr. Kazunori Koide
ChemPlusChem 2012 Volume 77( Issue 4) pp:281-283
Publication Date(Web):
DOI:10.1002/cplu.201200015
Co-reporter:Shin Ando and Kazunori Koide
Journal of the American Chemical Society 2011 Volume 133(Issue 8) pp:2556-2566
Publication Date(Web):February 4, 2011
DOI:10.1021/ja108028m
Mercury is a major threat to the environment and to human health. It is highly desirable to develop a user-friendly kit for on-site mercury detection. Such a method must be able to detect mercury below the threshold levels for drinking water, 1−2 ppb. We developed a fluorescence method based on the oxymercuration of vinyl ethers to detect mercury in dental and environmental samples. Chloride ions interfered with the oxymercuration reaction, but the addition of AgNO3 solved this problem. Fine electronic and structural tuning led to the development of a more responsive probe that was less sensitive to chloride ion interference. This second-generation probe could detect 1 ppb mercury ions in water.
Co-reporter:Kazunori Koide, Sami Osman, Amanda L. Garner, Fengling Song, Tracy Dixon, Joel S. Greenberger, and Michael W. Epperly
ACS Medicinal Chemistry Letters 2011 Volume 2(Issue 4) pp:270
Publication Date(Web):January 25, 2011
DOI:10.1021/ml100159p
Currently, no drugs are available to protect humans from γ-irradiation-induced death. Because reactive oxygen species are produced upon exposure to γ-irradiation and directly responsible for the resulting death, we hypothesized that antioxidants found in foodstuffs may provide a safe and potent means of antioxidant-dependent radioprotection. Here, we describe our studies investigating the radioprotective properties of resveratrol and 3,5,4′-tri-O-acetylresveratrol. Each of these natural antioxidants was found to protect live cells after γ-irradiation. In mice, the use of 3,5,4′-tri-O-acetylresveratrol with Cremophor EL was particularly effective, indicating that this natural antioxidant may be a leading candidate for radioprotective drug development.Keywords (keywords): 3,5,4′-tri-O-acetylresveratrol; Antioxidants; Cremophor EL; radioprotection; resveratrol
Co-reporter:Sami Osman, William R. Waud, Gregory S. Gorman, Billy W. Day and Kazunori Koide
MedChemComm 2011 vol. 2(Issue 1) pp:38-43
Publication Date(Web):02 Nov 2010
DOI:10.1039/C0MD00179A
This study was designed to determine the in vitro and in vivo antitumor behaviour of three analogues of the natural product FR901464. All analogues demonstrated effective inhibition of cell proliferation. Minimal in vivo antitumor activity was observed, warranting further PK and antitumor efficacy studies.
Co-reporter:Sami Osman;Brian J. Albert;Yanping Wang;Dr. Miaosheng Li;Nancy L. Czaicki ;Dr. Kazunori Koide
Chemistry - A European Journal 2011 Volume 17( Issue 3) pp:895-904
Publication Date(Web):
DOI:10.1002/chem.201002402
Abstract
FR901464, a natural product isolated from a bacterium source, activates a reporter gene, inhibits pre-mRNA splicing, and shows antitumor activity. We previously reported the development of a more potent analogue, meayamycin, through the total synthesis of FR901464. Herein, we report detailed structure–activity relationships of FR901464 that revealed the significance of the epoxide, carbon atoms in the tetrahydropyran ring, the Z geometry of the side chain, the 1,3-diene moiety, the C4-hydroxy group, and the C2′′-carbonyl group. Importantly, the methyl group of the acetyl substituent was found to be inessential, leading to a new potent analogue. Additionally, partially based on in vivo data, we synthesized and evaluated potentially more metabolically stable analogues for their antiproliferative activity. These structural insights into FR901464 may contribute to the simplification of the natural product for further drug development.
Co-reporter:Amanda K. Leslie, Dandan Li, and Kazunori Koide
The Journal of Organic Chemistry 2011 Volume 76(Issue 16) pp:6860-6865
Publication Date(Web):July 26, 2011
DOI:10.1021/jo200947e
We previously reported a fluorescent chemodosimeter for ozone. The β-elimination step after the ozonolysis of the chemodosimeter was too slow to be practical for real-time monitoring of ozone. We examined primary, secondary, and tertiary amines at various pHs. It was found that pyrrolidine in pH 9 buffer could accelerate the elimination to generate a fluorescence signal. The elimination step is now sufficiently rapid to monitor ozone exposure in real time. We also discovered that azetidine was distinctly effective for the same elimination reaction in a pH 6 buffer.
Co-reporter:Shin Ando, Amy L. Grote, and Kazunori Koide
The Journal of Organic Chemistry 2011 Volume 76(Issue 4) pp:1155-1158
Publication Date(Web):January 20, 2011
DOI:10.1021/jo102096d
Functionalized diketopiperazines (dioxopiperazines) are an important class of molecules in medicinal chemistry and material science. Herein we report a diastereoselective synthesis of diketopiperazine bis-α,β-epoxides via the oxidation of exocyclic olefins. Although six diastereomers may be formed by this approach, only one or two of them were observed.
Co-reporter:Dr. Fengling Song;Evan J. Carder;Clare C. Kohler ; Kazunori Koide
Chemistry - A European Journal 2010 Volume 16( Issue 45) pp:13500-13508
Publication Date(Web):
DOI:10.1002/chem.201001316
Abstract
Residual metals in fine chemicals are currently detected by using inductively coupled plasma mass spectrometry, which requires expensive instrumentation and does not have high-throughput capabilities. Although fluorescent probes can be amenable to high-throughput analyses of metals, the utility of such analyses is limited due to the lack of generality. Herein, we report a significant improvement (≈19-fold) to our previously reported catalysis-based fluorescent probe for palladium. Specifically, we found that slightly elevated temperature dramatically improved the generality of the method and that the deallylation reaction of the nonfluorescent compound 1 was accelerated by phosphate ions in aqueous media. This method was capable of detecting 0.2 ppb palladium. We demonstrated reasonably accurate palladium detection in various active pharmaceutical ingredients and highly functionalized organic compounds.
Co-reporter:Amanda L. Garner and Kazunori Koide
Chemical Communications 2009 (Issue 1) pp:86-88
Publication Date(Web):18 Nov 2008
DOI:10.1039/B814197E
Herein we demonstrate selective fluorescence detection of palladium in the presence of platinum by altering the pH of the reaction medium of a Pd0/Pt0-catalyzed Tsuji–Trost type reaction to yield a fluorescent compound.
Co-reporter:Amanda L. Garner and Kazunori Koide
Chemical Communications 2009 (Issue 1) pp:83-85
Publication Date(Web):17 Nov 2008
DOI:10.1039/B817220J
Herein we demonstrate fluorescence detection of total platinum species in buffers and serums by a Pt0-catalyzed Tsuji–Trost type reaction to yield a fluorescent compound.
Co-reporter:Kazunori Koide ;Fengling Song Dr.;Eric D. de Groh;Ama L. Garner;Valerie D. Mitchell;Lance A. Davidson ;Neil A. Hukriede
ChemBioChem 2008 Volume 9( Issue 2) pp:214-218
Publication Date(Web):
DOI:10.1002/cbic.200700565
Co-reporter:Brian J. Albert
ChemBioChem 2007 Volume 8(Issue 16) pp:
Publication Date(Web):23 OCT 2007
DOI:10.1002/cbic.200790056
The cover picture shows a cell treated with epoxide-containing compounds. There is concern about the reactivity of epoxides towards the most abundant and powerful nucleophile, thiols, in a biological setting. However, the kinetic data presented in this article indicate that these epoxides are able to reach their biological targets without nonspecific reactions with endogenous extra- and intracellular thiols such as glutathione and albumin. Data were obtained for the consumption of five common epoxide motifs under biologically relevant conditions by using N-acetylcysteamine and bovine serum albumin as model thiols. Further details can be found in the article by B. J. Albert and K. Koide on p. 1912 ff.
Co-reporter:Shatrughan P. Shahi Dr. Dr.
Angewandte Chemie 2004 Volume 116(Issue 19) pp:
Publication Date(Web):28 APR 2004
DOI:10.1002/ange.200353400
Die Eleganz des Silbers zeigt sich in der Alkinylierung funktionalisierter Aldehyde und Ketone. Silberacetylide von Alkinylpropiolaten addieren in Gegenwart von [Cp2ZrCl2] und AgOTf an Carbonylverbindungen (siehe Schema), wobei sowohl basen- als auch säureempfindliche funktionelle Gruppen toleriert werden. Tf=Trifluormethansulfonyl.
Co-reporter:Shatrughan P. Shahi Dr. Dr.
Angewandte Chemie International Edition 2004 Volume 43(Issue 19) pp:
Publication Date(Web):28 APR 2004
DOI:10.1002/anie.200353400
The beauty of silver has been demonstrated in the alkynylation of functionalized aldehydes and ketones. Silver acetylides of alkynyl propiolates undergo addition to carbonyl compounds in the presence of [Cp2ZrCl2] and AgOTf (see scheme) in a reaction that is compatible with both base-sensitive and acid-sensitive functional groups. Tf=trifluoromethanesulfonyl.
Co-reporter:Upamanyu Basu and Kazunori Koide
Chemical Communications 2016 - vol. 52(Issue 19) pp:NaN3849-3849
Publication Date(Web):2016/02/17
DOI:10.1039/C5CC08289G
We previously developed Pittsburgh Green homoallyl ether to quantify trace ozone. Independently, problems were reported when the method was used for excess ozone. Here, we discuss the origin of the reported problems and demonstrate that when this method is used according to our previous report, no problems occur.
Co-reporter:Matthew P. Tracey, Dianne Pham and Kazunori Koide
Chemical Society Reviews 2015 - vol. 44(Issue 14) pp:NaN4791-4791
Publication Date(Web):2015/02/23
DOI:10.1039/C4CS00323C
Neither palladium nor platinum is an endogenous biological metal. Imaging palladium in biological samples, however, is becoming increasingly important because bioorthogonal organometallic chemistry involves palladium catalysis. In addition to being an imaging target, palladium has been used to fluorometrically image biomolecules. In these cases, palladium species are used as imaging-enabling reagents. This review article discusses these fluorometric methods. Platinum-based drugs are widely used as anticancer drugs, yet their mechanism of action remains largely unknown. We discuss fluorometric methods for imaging or quantifying platinum in cells or biofluids. These methods include the use of chemosensors to directly detect platinum, fluorescently tagging platinum-based drugs, and utilizing post-labeling to elucidate distribution and mode of action.
Co-reporter:Amanda L. Garner and Kazunori Koide
Chemical Communications 2009(Issue 1) pp:NaN88-88
Publication Date(Web):2008/11/18
DOI:10.1039/B814197E
Herein we demonstrate selective fluorescence detection of palladium in the presence of platinum by altering the pH of the reaction medium of a Pd0/Pt0-catalyzed Tsuji–Trost type reaction to yield a fluorescent compound.
Co-reporter:Amanda L. Garner and Kazunori Koide
Chemical Communications 2009(Issue 1) pp:NaN85-85
Publication Date(Web):2008/11/17
DOI:10.1039/B817220J
Herein we demonstrate fluorescence detection of total platinum species in buffers and serums by a Pt0-catalyzed Tsuji–Trost type reaction to yield a fluorescent compound.