Dewey Holten

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Name: Holten, Dewey
Organization: Washington University , USA
Department: Department of Chemistry
Title: Professor(PhD)

TOPICS

Co-reporter:Mengran Liu;Chih-Yuan Chen;Don Hood;Masahiko Taniguchi;James R. Diers;David F. Bocian;Jonathan S. Lindsey
New Journal of Chemistry (1998-Present) 2017 vol. 41(Issue 10) pp:3732-3744
Publication Date(Web):2017/05/15
DOI:10.1039/C6NJ04135C
Synthetic routes are described to access mono- and dioxobacteriochlorins that lack any peripheral substituents, with the exception of a geminal dimethyl group in each pyrroline ring to stabilize the macrocycle towards adventitious oxidation. The introduction of one or two oxo groups on the pyrroline rings results in hypsochromic shifts of the longest wavelength near-infrared absorption band (Qy) to 690 and 680 nm, respectively, versus the parent bacteriochlorin for which the Qy band is at 713 nm. The position of the Qy absorption band of the oxobacteriochlorin is in the range of that of elaborately functionalized chlorin macrocycles (containing one pyrroline ring versus two in a bacteriochlorin), where the functional groups bathochromically shift the Qy feature from that of unfunctionalized chlorins (typically in the low 600 nm region). The long-wavelength absorption band of synthetic oxobacteriochlorins thus appears in the window defined by simple chlorins to the red and substituted bacteriochlorins to the near-infrared. The ability to access the deep-red (680–690 nm) region via the relatively simple synthetic modification of oxo-group addition to a bacteriochlorin versus the more complex multifunctionalization of a chlorin is attractive for accessing tetrapyrroles for solar-energy conversion and other applications.
Co-reporter:Yizhou Liu;Srinivasarao Allu;Muthyala Nagarjuna Reddy;Don Hood;James R. Diers;David F. Bocian;Jonathan S. Lindsey
New Journal of Chemistry (1998-Present) 2017 vol. 41(Issue 11) pp:4360-4376
Publication Date(Web):2017/05/30
DOI:10.1039/C7NJ00499K
Bacteriochlorins such as bacteriochlorophyll a absorb strongly in the near-infrared spectral region and are potentially useful in a variety of photochemical fields. De novo syntheses of bacteriochlorins entail self-condensation of a dihydrodipyrrin-acetal (containing one pyrrole and one pyrroline joined via a methylidene bridge) either via a heavily studied Eastern–Western (E–W) route or a recently reported Northern–Southern (N–S) route. The Michael addition to form the dihydrodipyrrin-acetal for the E–W approach has limited scope for the installation of substituents on the pyrroline units. By use of the N–S route, new bacteriochlorins have been prepared that bear a pair of aryl or alkyl groups, together termed a “swallowtail” substituent, at each β-pyrroline unit, a previously inaccessible design. Single-crystal X-ray structures of three intermediates were determined. Bacteriochlorins synthesized herein exhibit characteristic bacteriochlorophyll-like absorption spectra, including a Qy band in the region of 730–758 nm. The swallowtail groups have little impact on the excited-state properties of the bacteriochlorins, and the slight changes of spectral properties that are observed stem from substituent electronic effects rather than changes in structure. In summary, introduction of an integral swallowtail unit on the pyrroline ring opens new sites for tailoring molecular designs without altering the attractive photophysical features of the synthetic bacteriochlorins.
Co-reporter:Eunkyung Yang;Nuonuo Zhang;Michael Krayer;Masahiko Taniguchi;James R. Diers;Christine Kirmaier;Jonathan S. Lindsey;David F. Bocian
Photochemistry and Photobiology 2016 Volume 92( Issue 1) pp:111-125
Publication Date(Web):
DOI:10.1111/php.12547

Abstract

Understanding the effects of substituents on spectral properties is essential for the rational design of tailored bacteriochlorins for light-harvesting and other applications. Toward this goal, three new bacteriochlorins containing previously unexplored conjugating substituents have been prepared and characterized. The conjugating substituents include two positively charged species, 2-(N-ethyl 2-quinolinium)vinyl- (B-1) and 2-(N-ethyl 4-pyridinium)vinyl- (B-2), and a neutral group, acroleinyl- (B-3); the charged species resemble cyanine (or styryl) dye motifs whereas the neutral unit resembles a merocyanine dye motif. The three bacteriochlorins are examined by static and time-resolved absorption and emission spectroscopy and density functional theoretical calculations. B-1 and B-2 have Qy absorption bathochromically shifted well into the NIR region (822 and 852 nm), farther than B-3 (793 nm) and other 3,13-disubstituted bacteriochlorins studied previously. B-1 and B-2 have broad Qy absorption and fluorescence features with large peak separation (Stokes shift), low fluorescence yields, and shortened S1 (Qy) excited-state lifetimes (~700 ps and ~100 ps). More typical spectra and S1 lifetime (~2.3 ns) are found for B-3. The combined photophysical and molecular-orbital characteristics suggest the altered spectra and enhanced nonradiative S1 decay of B-1 and B-2 derive from excited-state configurations in which electron density is shifted between the macrocycle and the substituents.

Co-reporter:Amit Kumar Mandal, Masahiko Taniguchi, James R. Diers, Dariusz M. NiedzwiedzkiChristine Kirmaier, Jonathan S. Lindsey, David F. Bocian, Dewey Holten
The Journal of Physical Chemistry A 2016 Volume 120(Issue 49) pp:9719-9731
Publication Date(Web):December 6, 2016
DOI:10.1021/acs.jpca.6b09483
Six free base porphyrins bearing 0–4 meso substituents have been examined by steady-state and time-resolved absorption and fluorescence spectroscopy in both toluene and N,N-dimethylformamide (DMF). The lifetime of the lowest singlet excited state (S1) decreases with an increase in the number of meso-phenyl groups; the values in toluene are H2P-0 (15.5 ns) > H2P-1 (14.9 ns) > H2P-2c (14.4 ns) > H2P-2t (13.8 ns) ∼ H2P-3 (13.8 ns) > H2P-4 (12.8 ns), where “H2P” refers to the core free base porphyrin, the numerical suffix indicates the number of meso-phenyl groups, and “c” and “t” refer to cis and trans, respectively. The opposite trend is found for the fluorescence quantum yield; the values in toluene are H2P-0 (0.049) < H2P-1 (0.063) ∼ H2P-2c (0.063) < H2P-2t (0.071) < H2P-3 (0.073) < H2P-4 (0.090). Similar trends occur in DMF. All radiative and nonradiative (internal conversion and intersystem crossing) rate constants for S1 decay increase with the increasing number of meso-phenyl groups. The increase in the rate constant for fluorescence parallels an increase in oscillator strength of the S0 → S1 absorption manifold. The trend is reproduced by time-dependent density functional theory calculations. The calculations within the context of the four-orbital model reveal that the enhanced S0 ↔ S1 radiative probabilities derive from a preferential effect of the meso-phenyl groups to raise the energy of the highest occupied molecular orbital, which underpins a parallel bathochromic shift in the S0 → S1 absorption wavelength. Polarizations of the S1 and S2 excited states with respect to molecular structural features (e.g., the central proton axis) are analyzed in the context of historical conventions for porphyrins versus chlorins and bacteriochlorins, where some ambiguity exists, including for porphine, one of the simplest tetrapyrroles. Collectively, the study affords fundamental insights into the photophysical properties and electronic structure of meso-phenylporphyrins that should aid their continued widespread use as benchmarks for tetrapyrrole-based architectures in chemical, solar-energy, and life-sciences research.
Co-reporter:Javad Amanpour, Gongfang Hu, Eric J. Alexy, Amit Kumar Mandal, Hyun Suk Kang, Jonathan M. Yuen, James R. Diers, David F. Bocian, Jonathan S. Lindsey, and Dewey Holten
The Journal of Physical Chemistry A 2016 Volume 120(Issue 38) pp:7434-7450
Publication Date(Web):September 16, 2016
DOI:10.1021/acs.jpca.6b06857
Light-harvesting architectures that afford strong absorption across the near-ultraviolet to near-infrared region, namely, panchromatic absorptivity, are potentially valuable for capturing the broad spectral distribution of sunlight. One previously reported triad consisting of two perylene monoimides strongly coupled to a free base porphyrin via ethyne linkers (FbT) shows panchromatic absorption together with a porphyrin-like S1 excited state albeit at lower energy than that of a typical monomeric porphyrin. Here, two new porphyrin–bis(perylene) triads have been prepared wherein the porphyrin bears two pentafluorophenyl substituents. The porphyrin is in the free base (FbT-F) or zinc chelate (ZnT-F) forms. The zinc chelate (ZnT) of the original triad bearing nonfluorinated aryl rings also was prepared. The triads were characterized using static and time-resolved optical spectroscopy. The results were analyzed with the aid of molecular-orbital characteristics obtained using density functional theory calculations. Of the four triads, FbT is the most panchromatic in affording the most even distribution of absorption spectral intensity as well as exhibiting the largest wavelength span (380–750 nm). The triads exhibit fluorescence yields (0.35 for FbT-F in toluene) that are substantially greater than for the porphyrin benchmarks (0.049 for FbP-F). The singlet excited-state lifetimes (τS) for the triads in toluene decrease in the order FbT-F (2.7 ns) > FbT (2.0 ns) > ZnT (1.2 ns) ∼ ZnT-F (1.1 ns). The τS values in benzonitrile are FbT (1.3 ns) > FbT-F (1.2 ns) > ZnT-F (0.6 ns) > ZnT (0.2 ns). Thus, the free base triads exhibit relatively long (1.2–2.7 ns) excited-state lifetimes in both polar and nonpolar media. The combined photophysical characteristics indicate that FbT and FbT-F are the best choices for panchromatic light-harvesting systems. Collectively, the findings afford insights into the effects of electronic structure on the panchromatic behavior of ethynyl-linked porphyrin–perylene architectures that can help guide next-generation designs and utilization of these systems.
Co-reporter:Hyun Suk Kang, Nopondo N. Esemoto, James R. Diers, Dariusz M. Niedzwiedzki, Jordan A. Greco, Joshua Akhigbe, Zhanqian Yu, Chirag Pancholi, Ganga Viswanathan Bhagavathy, Jamie K. Nguyen, Christine Kirmaier, Robert R. Birge, Marcin Ptaszek, Dewey Holten, and David F. Bocian
The Journal of Physical Chemistry A 2016 Volume 120(Issue 3) pp:379-395
Publication Date(Web):January 14, 2016
DOI:10.1021/acs.jpca.5b10686
Achieving tunable, intense near-infrared absorption in molecular architectures with properties suitable for solar light harvesting and biomedical studies is of fundamental interest. Herein, we report the photophysical, redox, and molecular-orbital characteristics of nine hydroporphyrin dyads and associated benchmark monomers that have been designed and synthesized to attain enhanced light harvesting. Each dyad contains two identical hydroporphyrins (chlorin or bacteriochlorin) connected by a linker (ethynyl or butadiynyl) at the macrocycle β-pyrrole (3- or 13-) or meso (15-) positions. The strong electronic communication between constituent chromophores is indicated by the doubling of prominent absorption features, split redox waves, and paired linear combinations of frontier molecular orbitals. Relative to the benchmarks, the chlorin dyads in toluene show substantial bathochromic shifts of the long-wavelength absorption band (17–31 nm), modestly reduced singlet excited-state lifetimes (τS = 3.6–6.2 ns vs 8.8–12.3 ns), and increased fluorescence quantum yields (Φf = 0.37–0.57 vs 0.34–0.39). The bacteriochlorin dyads in toluene show significant bathochromic shifts (25–57 nm) and modestly reduced τS (1.6–3.4 ns vs 3.5–5.3 ns) and Φf (0.09–0.19 vs 0.17–0.21) values. The τS and Φf values for the bacteriochlorin dyads are reduced substantially (up to ∼20-fold) in benzonitrile. The quenching is due primarily to the increased S1 → S0 internal conversion that is likely induced by increased contribution of charge-resonance configurations to the S1 excited state in the polar medium. The fundamental insights gained into the physicochemical properties of the strongly coupled hydroporphyrin dyads may aid their utilization in solar-energy conversion and photomedicine.
Co-reporter:Preston L. Dilbeck, Qun Tang, David J. Mothersole, Elizabeth C. Martin, C. Neil Hunter, David F. Bocian, Dewey Holten, and Dariusz M. Niedzwiedzki
The Journal of Physical Chemistry B 2016 Volume 120(Issue 24) pp:5429-5443
Publication Date(Web):June 10, 2016
DOI:10.1021/acs.jpcb.6b03305
Six light-harvesting-2 complexes (LH2) from genetically modified strains of the purple photosynthetic bacterium Rhodobacter (Rb.) sphaeroides were studied using static and ultrafast optical methods and resonance Raman spectroscopy. These strains were engineered to incorporate carotenoids for which the number of conjugated groups (N = NC═C + NC═O) varies from 9 to 15. The Rb. sphaeroides strains incorporate their native carotenoids spheroidene (N = 10) and spheroidenone (N = 11), as well as longer-chain analogues including spirilloxanthin (N = 13) and diketospirilloxantion (N = 15) normally found in Rhodospirillum rubrum. Measurements of the properties of the carotenoid first singlet excited state (S1) in antennas from the Rb. sphaeroides set show that carotenoid-bacteriochlorophyll a (BChl a) interactions are similar to those in LH2 complexes from various other bacterial species and thus are not significantly impacted by differences in polypeptide composition. Instead, variations in carotenoid-to-BChl a energy transfer are primarily regulated by the N-determined energy of the carotenoid S1 excited state, which for long-chain (N ≥ 13) carotenoids is not involved in energy transfer. Furthermore, the role of the long-chain carotenoids switches from a light-harvesting supporter (via energy transfer to BChl a) to a quencher of the BChl a S1 excited state B850*. This quenching is manifested as a substantial (∼2-fold) reduction of the B850* lifetime and the B850* fluorescence quantum yield for LH2 housing the longest carotenoids.
Co-reporter:Jonathan M. Yuen;Michelle A. Harris;Mengran Liu;James R. Diers;Christine Kirmaier;David F. Bocian;Jonathan S. Lindsey
Photochemistry and Photobiology 2015 Volume 91( Issue 2) pp:331-342
Publication Date(Web):
DOI:10.1111/php.12401

Abstract

Photosynthetic organisms are adapted to light characteristics in their habitat in part via the spectral characteristics of the associated chlorophyll pigments, which differ in the position of a formyl group around the chlorin macrocycle (chlorophylls b, d, f) or no formyl group (chlorophyll a). To probe the origin of this spectral tuning, the photophysical and electronic structural properties of a new set of synthetic chlorins are reported. The zinc and free base chlorins have a formyl group at either the 2- or 3-position. The four compounds have fluorescence yields in the range 0.19–0.28 and singlet excited-state lifetimes of ca 4 ns for zinc chelates and ca 8 ns for the free base forms. The photophysical properties of the 2- and 3-formyl zinc chlorins are similar to those observed previously for 13-formyl or 3,13-diformyl chlorins, but differ markedly from those for 7-formyl analogs. Molecular-orbital characteristics obtained from density functional theory (DFT) calculations were used as input to spectral simulations employing the four-orbital model. The analysis has uncovered the key changes in electronic structure engendered by the presence/location of a formyl group at various macrocycle positions, which is relevant to understanding the distinct spectral properties of the natural chlorophylls a, b, d and f.

Co-reporter:Pothiappan Vairaprakash, Eunkyung Yang, Tuba Sahin, Masahiko Taniguchi, Michael Krayer, James R. Diers, Alfred Wang, Dariusz M. Niedzwiedzki, Christine Kirmaier, Jonathan S. Lindsey, David F. Bocian, and Dewey Holten
The Journal of Physical Chemistry B 2015 Volume 119(Issue 12) pp:4382-4395
Publication Date(Web):March 13, 2015
DOI:10.1021/jp512818g
Six new bacteriochlorins expanding the range of the strong near-infrared (NIR) absorption (Qy band) to both shorter and longer wavelengths (∼690 to ∼900 nm) have been synthesized and characterized. The architectures include bacteriochlorin–bisimides that have six-membered imide rings spanning the 3,5- and 13,15-macrocycle positions or five-membered imide rings spanning the β-pyrrolic 2,3- and 12,13-positions. Both bisimide types absorb at significantly longer wavelength than the bacteriochlorin precursors (no fused rings), whereas oxo-groups at the 7- or 7,17-positions shift the Qy band to a new short wavelength limit. Surprisingly, bacteriochlorin–bisimides with five-membered β-pyrrolic-centered imide rings have a Qy band closer to that of six-membered bacteriochlorin–monoimides. However, the five-membered bisimides (versus the six-membered bacteriochlorin–monoimides) have significantly enhanced absorption intensity that is paralleled by an ∼2-fold higher fluorescence yield (∼0.16 vs ∼0.07) and longer singlet excited-state lifetime (∼4 ns vs ∼2 ns). The photophysical enhancements derive in part from mixing of the lowest unoccupied frontier molecular orbitals of the five-membered imide ring with those of the bacteriochlorin framework. In general, all of the new bacteriochlorins have excited-state lifetimes (1–4 ns) that are sufficiently long for use in molecular-based systems for photochemical applications.
Co-reporter:Kaitlyn M. Faries, James R. Diers, Joseph W. Springer, Eunkyung Yang, Marcin Ptaszek, Dorothée Lahaye, Michael Krayer, Masahiko Taniguchi, Christine Kirmaier, Jonathan S. Lindsey, David F. Bocian, and Dewey Holten
The Journal of Physical Chemistry B 2015 Volume 119(Issue 24) pp:7503-7515
Publication Date(Web):January 14, 2015
DOI:10.1021/jp511257w
Efficient light harvesting for molecular-based solar-conversion systems requires absorbers that span the photon-rich red and near-infrared (NIR) regions of the solar spectrum. Reported herein are the photophysical properties of a set of six chlorin-imides and nine synthetic chlorin analogues that extend the absorption deeper (624–714 nm) into these key spectral regions. These absorbers help bridge the gap between typical chlorins and bacteriochlorins. The new compounds have high fluorescence quantum yields (0.15–0.34) and long singlet excited-state lifetimes (4.2–10.9 ns). The bathochromic shift in Qy absorption is driven by substituent-based stabilization of the lowest unoccupied molecular orbital, with the largest shifts for chlorins that bear an electron-withdrawing, conjugative group at the 3-position in combination with a 13,15-imide ring.
Co-reporter:Tuba Sahin, Michelle A. Harris, Pothiappan Vairaprakash, Dariusz M. Niedzwiedzki, Vijaya Subramanian, Andrew P. Shreve, David F. Bocian, Dewey Holten, and Jonathan S. Lindsey
The Journal of Physical Chemistry B 2015 Volume 119(Issue 32) pp:10231-10243
Publication Date(Web):July 31, 2015
DOI:10.1021/acs.jpcb.5b04841
Lipid vesicles are used as the organizational structure of self-assembled light-harvesting systems. Following analysis of 17 chromophores, six were selected for inclusion in vesicle-based antennas. The complementary absorption features of the chromophores span the near-ultraviolet, visible, and near-infrared region. Although the overall concentration of the pigments is low (∼1 μM for quantitative spectroscopic studies) in a cuvette, the lipid-vesicle system affords high concentration (≥10 mM) in the bilayer for efficient energy flow from donor to acceptor. Energy transfer was characterized in 13 representative binary mixtures using static techniques (fluorescence–excitation versus absorptance spectra, quenching of donor fluorescence, modeling emission spectra of a mixture versus components) and time-resolved spectroscopy (fluorescence, ultrafast absorption). Binary donor–acceptor systems that employ a boron-dipyrrin donor (S0 ↔ S1 absorption/emission in the blue-green) and a chlorin or bacteriochlorin acceptor (S0 ↔ S1 absorption/emission in the red or near-infrared) have an average excitation-energy-transfer efficiency (ΦEET) of ∼50%. Binary systems with a chlorin donor and a chlorin or bacteriochlorin acceptor have ΦEET ∼ 85%. The differences in ΦEET generally track the donor-fluorescence/acceptor-absorption spectral overlap within a dipole–dipole coupling (Förster) mechanism. Substantial deviation from single-exponential decay of the excited donor (due to the dispersion of donor–acceptor distances) is expected and observed. The time profiles and resulting ΦEET are modeled on the basis of (Förster) energy transfer between chromophores relatively densely packed in a two-dimensional compartment. Initial studies of two ternary and one quaternary combination of chromophores show the enhanced spectral coverage and energy-transfer efficacy expected on the basis of the binary systems. Collectively, this approach may provide one of the simplest designs for self-assembled light-harvesting systems that afford broad solar collection and efficient energy transfer.
Co-reporter:Michelle A. Harris;Tuba Sahin;Jianbing Jiang;Pothiappan Vairaprakash;Pamela S. Parkes-Loach;Dariusz M. Niedzwiedzki;Christine Kirmaier;Paul A. Loach;David F. Bocian;Jonathan S. Lindsey
Photochemistry and Photobiology 2014 Volume 90( Issue 6) pp:1264-1276
Publication Date(Web):
DOI:10.1111/php.12319

Abstract

Biohybrid light-harvesting antennas are an emerging platform technology with versatile tailorability for solar-energy conversion. These systems combine the proven peptide scaffold unit utilized for light harvesting by purple photosynthetic bacteria with attached synthetic chromophores to extend solar coverage beyond that of the natural systems. Herein, synthetic unattached chromophores are employed that partition into the organized milieu (e.g. detergent micelles) that house the LH1-like biohybrid architectures. The synthetic chromophores include a hydrophobic boron-dipyrrin dye (A1) and an amphiphilic bacteriochlorin (A2), which transfer energy with reasonable efficiency to the bacteriochlorophyll acceptor array (B875) of the LH1-like cyclic oligomers. The energy-transfer efficiencies are markedly increased upon covalent attachment of a bacteriochlorin (B1 or B2) to the peptide scaffold, where the latter likely acts as an energy-transfer relay site for the (potentially diffusing) free chromophores. The efficiencies are consistent with a Förster (through-space) mechanism for energy transfer. The overall energy-transfer efficiency from the free chromophores via the relay to the target site can approach those obtained previously by relay-assisted energy transfer from chromophores attached at distant sites on the peptides. Thus, the use of free accessory chromophores affords a simple design to enhance the overall light-harvesting capacity of biohybrid LH1-like architectures.

Co-reporter:Michelle A. Harris;Jianbing Jiang;Dariusz M. Niedzwiedzki
Photosynthesis Research 2014 Volume 121( Issue 1) pp:35-48
Publication Date(Web):2014 July
DOI:10.1007/s11120-014-9993-8
Biohybrid antennas built upon chromophore–polypeptide conjugates show promise for the design of efficient light-capturing modules for specific purposes. Three new designs, each of which employs analogs of the β-polypeptide from Rhodobacter sphaeroides, have been investigated. In the first design, amino acids at seven different positions on the polypeptide were individually substituted with cysteine, to which a synthetic chromophore (bacteriochlorin or Oregon Green) was covalently attached. The polypeptide positions are at –2, –6, –10, –14, –17, –21, and –34 relative to the 0-position of the histidine that coordinates bacteriochlorophyll a (BChl a). All chromophore–polypeptides readily formed LH1-type complexes upon combination with the α-polypeptide and BChl a. Efficient energy transfer occurs from the attached chromophore to the circular array of 875 nm absorbing BChl a molecules (denoted B875). In the second design, use of two attachment sites (positions –10 and –21) on the polypeptide affords (1) double the density of chromophores per polypeptide and (2) a highly efficient energy-transfer relay from the chromophore at –21 to that at –10 and on to B875. In the third design, three spectrally distinct bacteriochlorin–polypeptides were prepared (each attached to cysteine at the –14 position) and combined in an ~1:1:1 mixture to form a heterogeneous mixture of LH1-type complexes with increased solar coverage and nearly quantitative energy transfer from each bacteriochlorin to B875. Collectively, the results illustrate the great latitude of the biohybrid approach for the design of diverse light-harvesting systems.
Co-reporter:Eunkyung Yang, Jieqi Wang, James R. Diers, Dariusz M. Niedzwiedzki, Christine Kirmaier, David F. Bocian, Jonathan S. Lindsey, and Dewey Holten
The Journal of Physical Chemistry B 2014 Volume 118(Issue 6) pp:1630-1647
Publication Date(Web):January 31, 2014
DOI:10.1021/jp411629m
The synthesis, photophysical, redox, and molecular-orbital characteristics of three perylene–tetrapyrrole dyads were investigated to probe the efficacy of the arrays for use as light-harvesting constituents. Each dyad contains a common perylene–monoimide that is linked at the N-imide position via an arylethynyl group to the meso-position of the tetrapyrrole. The tetrapyrroles include a porphyrin, chlorin, and bacteriochlorin, which have zero, one, and two reduced pyrrole rings, respectively. The increased pyrrole-ring reduction results in a progressive red shift and intensification of the lowest-energy absorption band, as exemplified by benchmark monomers. The arylethyne linkage affords moderate perylene–tetrapyrrole electronic coupling in the dyads as evidenced by the optical, molecular-orbital, and redox properties of the components of the dyads versus the constituent parts. All three dyads in nonpolar solvents exhibit relatively fast (subpicosecond) energy transfer from the perylene to the tetrapyrrole. Competing charge-transfer processes are also absent in nonpolar solvents, but become active for both the chlorin and bacteriochlorin-containing dyads in polar solvents. Calculations of energy-transfer rates via the Förster, through-space mechanism reveal that these rates are, on average, 3-fold slower than the observed rates. Thus, the Dexter through-bond mechanism contributes more substantially than the through-space mechanism to energy transfer in the dyads. The electronic communication between the perylene and tetrapyrrole falls in a regime intermediate between those operative in other classes of perylene–tetrapyrrole dyads that have previously been studied.
Co-reporter:James R. Diers, Qun Tang, Christopher J. Hondros, Chih-Yuan Chen, Dewey Holten, Jonathan S. Lindsey, and David F. Bocian
The Journal of Physical Chemistry B 2014 Volume 118(Issue 27) pp:7520-7532
Publication Date(Web):June 26, 2014
DOI:10.1021/jp504286w
Vibronic characteristics and spin-density distributions in the core bacteriochlorin macrocycle were revealed by spectroscopic and theoretical studies of 16 isotopologues. The vibrational modes in copper bacteriochlorin isotopologues were examined via resonance Raman and Fourier-transform infrared spectroscopy. The resonance Raman spectra exhibit an exceptional sparcity of vibronically active modes of the core macrocycle, in contrast with the rich spectra of the natural bacteriochlorophylls. The Qy-excitation resonance Raman spectrum is dominated by a single mode at 727 cm–1, which calculations suggest is due to a symmetrical accordion-like deformation of the five-atom Cm(CaNCa)pyrroleCm portion of the ring core. This deformation also dominates the vibronic features in the absorption and fluorescence spectra. The spin-density distributions in the π-cation radical of the zinc bacteriochlorin isotopologues were studied by electron paramagnetic resonance spectroscopy. The spectra indicate a significant electron/spin density (ρ ∼ 0.1) on each meso-carbon atom. This observation contradicts the predictions of early calculations that have been assumed to be correct for nearly four decades. Collectively, these findings have implications for how the structural features that characterize natural bacteriochlorophylls might influence energy- and electron-transfer processes in photosynthesis and alter the thinking on the design of synthetic, bacteriochlorin-based arrays for solar-energy conversion.
Co-reporter:Kunche Aravindu, Olga Mass, Pothiappan Vairaprakash, Joseph W. Springer, Eunkyung Yang, Dariusz M. Niedzwiedzki, Christine Kirmaier, David F. Bocian, Dewey Holten and Jonathan S. Lindsey  
Chemical Science 2013 vol. 4(Issue 9) pp:3459-3477
Publication Date(Web):24 Jun 2013
DOI:10.1039/C3SC51335A
The incorporation of amphiphilic tetrapyrrole macrocycles in organized media is of great value for a variety of fundamental photochemical studies, yet work to date has chiefly employed porphyrins rather than chlorins or bacteriochlorins. The latter absorb strongly in the red or near-infrared spectral region, respectively. Here, eight amphiphilic macrocycles (six chlorins and two bacteriochlorins) have been designed, synthesized and characterized; the compounds differ in long wavelength absorption (610–745 nm) and peripheral substituents (type of auxochrome, hydrophobic/hydrophilic groups). A methyl pyridinium or benzoic acid substituent at the 15-position provides a polar “tail” whereas a hydrophobic group distal thereto (in the chlorins) provides a lipophilic “head” for the spontaneous incorporation in organized media. The eight (bacterio)chlorins are characterized by static and time-resolved absorption and fluorescence spectroscopy in N,N-dimethylformamide (DMF) and three micellar environments (TX-100, CTAB, and SDS) as well as ultrafast transient absorption studies in DMF. In most cases, a long-lived excited singlet state was observed [free base chlorins (Φf = 0.14–0.20; τS = 7.9–12.1 ns; Φisc = 0.5), zinc chlorins (Φf = 0.08–0.19; τS = 2.0–3.4 ns; Φisc = 0.6–0.8) and free base bacteriochlorins (Φf = 0.06–0.16; τS = 1.8–4.6 ns; Φisc = 0.4)]. In the case of bacteriochlorins, minimal medium dependence was observed whereas changing the hydrophilic group from methyl pyridinium to benzoic acid increases the fluorescence yield and excited-state lifetime by 50%. In the case of chlorins, the zinc chelate with methyl pyridinium substitution exhibits substantial environmental dependence due to interaction of the solvent with the methyl pyridinium group and the central zinc metal. Collectively, the studies provide valuable information for the design of red or near-infrared absorbing chromophores for incorporation into amphiphilic environments such as micelles, membranes, or proteins.
Co-reporter:Kanumuri Ramesh Reddy, Jianbing Jiang, Michael Krayer, Michelle A. Harris, Joseph W. Springer, Eunkyung Yang, Jieying Jiao, Dariusz M. Niedzwiedzki, Dinesh Pandithavidana, Pamela S. Parkes-Loach, Christine Kirmaier, Paul A. Loach, David F. Bocian, Dewey Holten and Jonathan S. Lindsey  
Chemical Science 2013 vol. 4(Issue 5) pp:2036-2053
Publication Date(Web):05 Mar 2013
DOI:10.1039/C3SC22317E
The challenge of creating both pigment building blocks and scaffolding to organize a large number of such pigments has long constituted a central impediment to the construction of artificial light-harvesting architectures. Light-harvesting (LH) antennas in photosynthetic bacteria are formed in a two-tiered self-assembly process wherein (1) a peptide dyad containing two bacteriochlorophyll a molecules forms, and (2) the dyads associate to form cyclic oligomers composed of 8 or 9 dyads in LH2 and 15 or 16 in LH1 of purple photosynthetic bacteria. While such antenna systems generally have near-quantitative transfer of excitation energy among pigments, only a fraction of the solar spectrum is typically absorbed. A platform architecture for study of light-harvesting phenomena has been developed that employs native photosynthetic peptide analogs, native bacteriochlorophyll a, and synthetic near-infrared-absorbing bacteriochlorins. Herein, the syntheses of 10 lipophilic bacteriochlorins are reported, of which 7 contain bioconjugatable handles (maleimide, iodoacetamide, formyl, carboxylic acid) for attachment to the peptide chassis. The bioconjugatable bacteriochlorins typically exhibit a long-wavelength absorption band in the range 710 to 820 nm, fluorescence yield of 0.1–0.2, and lifetime of the lowest singlet excited state of 2–5 ns. The α-helical structure of the native-like peptide is retained upon conjugation with a synthetic bacteriochlorin, as judged by single-reflection infrared studies. Static and time-resolved optical studies of the oligomeric biohybrid architectures in aqueous detergent solution reveal efficient (∼90%) excitation energy transfer from the attached bacteriochlorin to the native-like bacteriochlorophyll a sites. The biohybrid light-harvesting architectures thus exploit the self-constituting features of the natural systems yet enable versatile incorporation of members from a palette of synthetic chromophores, thereby opening the door to a wide variety of studies in artificial photosynthesis.
Co-reporter:Michelle A. Harris, Pamela S. Parkes-Loach, Joseph W. Springer, Jianbing Jiang, Elizabeth C. Martin, Pu Qian, Jieying Jiao, Dariusz M. Niedzwiedzki, Christine Kirmaier, John D. Olsen, David F. Bocian, Dewey Holten, C. Neil Hunter, Jonathan S. Lindsey and Paul A. Loach  
Chemical Science 2013 vol. 4(Issue 10) pp:3924-3933
Publication Date(Web):06 Aug 2013
DOI:10.1039/C3SC51518D
Native length bacterial light-harvesting peptides carrying covalently attached designer chromophores have been created that self-assemble with native bacteriochlorophyll a (BChl a) to afford stable antennas with enhanced spectral coverage. Native (or native-like) α- and β-peptides interact with each other and BChl a to form a heterodimeric (αβ-dyad) unit that can then oligomerize to form biohybrid analogs of the bacterial core light-harvesting complex (LH1). Pairs of distinct synthetic chromophores were incorporated in αβ-dyads at selected distances from the BChl a target site (position 0). Two designs were explored. One design used green-yellow absorbing/emitting Oregon Green at the −34 position (toward the N-terminus relative to the BChl a coordination site) of β and orange-red absorbing/emitting Rhodamine Red at the −20 position of α, which combine with BChl a to give homogeneous oligomers. A second design used two different β-peptide conjugates, one with Oregon Green at the −34 position and the second with a near-infrared absorbing/emitting synthetic bacteriochlorin at the −14 position, which combine with α and BChl a to give a heterogeneous mixture of oligomers. The designs afford antennas with ∼45 to ∼60 pigments, provide enhanced spectral coverage across the visible and near-infrared regions relative to native antennas, and accommodate pigments at remote sites that contribute to solar light harvesting via an energy-transfer cascade. The efficiencies of energy-transfer to the BChl a target in the biohybrid antennas are comparable to native antennas, as revealed by static and time-resolved absorption and emission studies. The results show that the biohybrid approach, where designer chromophores are integrated via semisynthesis with native-like scaffolding, constitutes a versatile platform technology for rapid prototyping of antennas for solar energy capture without the laborious synthesis typically required for creating artificial photosynthetic light-harvesting architectures.
Co-reporter:Eunkyung Yang;Christian Ruzié;Michael Krayer;James R. Diers;Dariusz M. Niedzwiedzki;Christine Kirmaier;Jonathan S. Lindsey;David F. Bocian
Photochemistry and Photobiology 2013 Volume 89( Issue 3) pp:586-604
Publication Date(Web):
DOI:10.1111/php.12053

Abstract

Synthetic bacteriochlorins enable systematic tailoring of substituents about the bacteriochlorin chromophore and thereby provide insights concerning the native bacteriochlorophylls of bacterial photosynthesis. Nine free-base bacteriochlorins (eight prepared previously and one prepared here) have been examined that bear diverse substituents at the 13- or 3,13-positions. The substituents include chalcone (3-phenylprop-2-en-1-onyl) derivatives with groups attached to the phenyl moiety, a “reverse chalcone” (3-phenyl-3-oxo-1-enyl), and extended chalcones (5-phenylpenta-2,4-dien-1-onyl, retinylidenonyl). The spectral and photophysical properties (τs, Φf, Φic, Φisc, τT, kf, kic, kisc) of the bacteriochlorins have been characterized. The bacteriochlorins absorb strongly in the 780–800 nm region and have fluorescence quantum yields (Φf) in the range 0.05–0.11 in toluene and dimethylsulfoxide. Light-induced electron promotions between orbitals with predominantly substituent or macrocycle character or both may give rise to some net macrocycle  substituent charge-transfer character in the lowest and higher singlet excited states as indicated by density functional theory (DFT) and time-dependent DFT calculations. Such calculations indicated significant participation of molecular orbitals beyond those (HOMO − 1 to LUMO + 1) in the Gouterman four-orbital model. Taken together, the studies provide insight into the fundamental properties of bacteriochlorins and illustrate designs for tuning the spectral and photophysical features of these near-infrared-absorbing tetrapyrrole chromophores.

Co-reporter:Eunkyung Yang;James R. Diers;Ying-Ying Huang;Michael R. Hamblin;Jonathan S. Lindsey;David F. Bocian
Photochemistry and Photobiology 2013 Volume 89( Issue 3) pp:605-618
Publication Date(Web):
DOI:10.1111/php.12021

Abstract

Photophysical, photostability, electrochemical and molecular-orbital characteristics are analyzed for a set of stable dicyanobacteriochlorins that are promising photosensitizers for photodynamic therapy (PDT). The bacteriochlorins are the parent compound (BC), dicyano derivative (NC)2BC and corresponding zinc (NC)2BC-Zn and palladium chelate (NC)2BC-Pd. The order of PDT activity against HeLa human cancer cells in vitro is (NC)2BC-Pd > (NC)2BC > (NC)2BC-Zn ≈ BC. The near-infrared absorption feature of each dicyanobacteriochlorin is bathochromically shifted 35–50 nm (748–763 nm) from that for BC (713 nm). Intersystem crossing to the PDT-active triplet excited state is essentially quantitative for (NC)2BC-Pd. Phosphorescence from (NC)2BC-Pd occurs at 1122 nm (1.1 eV). This value and the measured ground-state redox potentials fix the triplet excited-state redox properties, which underpin PDT activity via Type-1 (electron transfer) pathways. A perhaps counterintuitive (but readily explicable) result is that of the three dicyanobacteriochlorins, the photosensitizer with the shortest triplet lifetime (7 μs), (NC)2BC-Pd has the highest activity. Photostabilities of the dicyanobacteriochlorins and other bacteriochlorins studied recently are investigated and discussed in terms of four phenomena: aggregation, reduction, oxidation and chemical reaction. Collectively, the results and analysis provide fundamental insights concerning the molecular design of PDT agents.

Co-reporter:Joseph W. Springer ; Pamela S. Parkes-Loach ; Kanumuri Ramesh Reddy ; Michael Krayer ; Jieying Jiao ; Gregory M. Lee ; Dariusz M. Niedzwiedzki ; Michelle A. Harris ; Christine Kirmaier ; David F. Bocian ; Jonathan S. Lindsey ; Dewey Holten ;Paul A. Loach
Journal of the American Chemical Society 2012 Volume 134(Issue 10) pp:4589-4599
Publication Date(Web):February 29, 2012
DOI:10.1021/ja207390y
Biohybrid antenna systems have been constructed that contain synthetic chromophores attached to 31mer analogues of the bacterial photosynthetic core light-harvesting (LH1) β-polypeptide. The peptides are engineered with a Cys site for bioconjugation with maleimide-terminated chromophores, which include synthetic bacteriochlorins (BC1, BC2) with strong near-infrared absorption and commercial dyes Oregon green (OGR) and rhodamine red (RR) with strong absorption in the blue-green to yellow-orange regions. The peptides place the Cys 14 (or 6) residues before a native His site that binds bacteriochlorophyll a (BChl-a) and, like the native LH proteins, have high helical content as probed by single-reflection IR spectroscopy. The His residue associates with BChl-a as in the native LH1 β-polypeptide to form dimeric ββ-subunit complexes [31mer(−14Cys)X/BChl]2, where X is one of the synthetic chromophores. The native-like BChl-a dimer has Qy absorption at 820 nm and serves as the acceptor for energy from light absorbed by the appended synthetic chromophore. The energy-transfer characteristics of biohybrid complexes have been characterized by steady-state and time-resolved fluorescence and absorption measurements. The quantum yields of energy transfer from a synthetic chromophore located 14 residues from the BChl-coordinating His site are as follows: OGR (0.30) < RR (0.60) < BC2 (0.90). Oligomeric assemblies of the subunit complexes [31mer(−14Cys)X/BChl]n are accompanied by a bathochromic shift of the Qy absorption of the BChl-a oligomer as far as the 850-nm position found in cyclic native photosynthetic LH2 complexes. Room-temperature stabilized oligomeric biohybrids have energy-transfer quantum yields comparable to those of the dimeric subunit complexes as follows: OGR (0.20) < RR (0.80) < BC1 (0.90). Thus, the new biohybrid antennas retain the energy-transfer and self-assembly characteristics of the native antenna complexes, offer enhanced coverage of the solar spectrum, and illustrate a versatile paradigm for the construction of artificial LH systems.
Co-reporter:Christopher J. Hondros, Kunche Aravindu, James R. Diers, Dewey Holten, Jonathan S. Lindsey, and David F. Bocian
Inorganic Chemistry 2012 Volume 51(Issue 20) pp:11076-11086
Publication Date(Web):October 1, 2012
DOI:10.1021/ic301613k
Understanding hole/electron-transfer processes among interacting constituents of multicomponent molecular architectures is central to the fields of artificial photosynthesis and molecular electronics. Herein, we utilize a recently demonstrated 203Tl/205Tl hyperfine “clocking” strategy to probe the rate of hole/electron transfer in the monocations of a series of three thallium-chelated porphyrin dyads, designated Tl2-U, Tl2-M, and Tl2-B, that are linked via diarylethynes wherein the number of ortho-dimethyl substituents on the aryl group of the linker systematically increases (none, one, and two, respectively). Variable-temperature (160–340 K) EPR studies on the monocations of the three dyads were used to examine the thermal activation behavior of the hole/electron-transfer process and reveal the following: (1) Hole/electron transfer at room temperature (295 K) slows as torsional constraints are added to the diarylethyne linker [k(Tl2-U) > k(Tl2-M) > k(Tl2-B)], with rate constants that correspond to time constants in the 2–5 ns regime. (2) As the temperature decreases, the hole/electron-transfer rates for the monocations of the three types of dyads converge and then cross over. At the lowest temperatures examined (160–170 K), the trend in the hole/electron-transfer rates is essentially reversed [k(Tl2-B) > k(Tl2-M) ∼ k(Tl2-U)]. The trends in the temperature dependence of hole/electron-transfer among the three dyads are consistent with torsional motions of the aryl rings of the linker providing for thermal activation of the process at higher temperatures in the case of the less torsionally constrained dyads, Tl2-U and Tl2-M. In the case of the most torsionally constrained dyad, Tl2-B, the hole/electron-transfer process is activationless at all temperatures studied. The reversal in rates of hole/electron transfer among the three dyads at low temperature is qualitatively explained by the results of density functional theory calculations, which predict that static electronic factors could dominate the hole/electron-transfer process when torsional dynamics are thermally diminished.
Co-reporter:Chih-Yuan Chen ; Erjun Sun ; Dazhong Fan ; Masahiko Taniguchi ; Brian E. McDowell ; Eunkyung Yang ; James R. Diers ; David F. Bocian ; Dewey Holten ;Jonathan S. Lindsey
Inorganic Chemistry 2012 Volume 51(Issue 17) pp:9443-9464
Publication Date(Web):August 23, 2012
DOI:10.1021/ic301262k
Access to metallobacteriochlorins is essential for investigation of a wide variety of fundamental photochemical processes, yet relatively few synthetic metallobacteriochlorins have been prepared. Members of a set of synthetic bacteriochlorins bearing 0–4 carbonyl groups (1, 2, or 4 carboethoxy substituents, or an annulated imide moiety) were examined under two conditions: (i) standard conditions for zincation of porphyrins [Zn(OAc)2·2H2O in N,N-dimethylformamide (DMF) at 60–80 °C], and (ii) treatment in tetrahydrofuran (THF) with a strong base [e.g., NaH or lithium diisopropylamide (LDA)] followed by a metal reagent MXn. Zincation of bacteriochlorins that bear 2–4 carbonyl groups proceeded under the former method whereas those with 0–2 carbonyl groups proceeded with NaH or LDA/THF followed by Zn(OTf)2. The scope of metalation (via NaH or LDA in THF) is as follows: (a) for bacteriochlorins that bear two electron-releasing aryl groups, M = Cu, Zn, Pd, and InCl (but not Mg, Al, Ni, Sn, or Au); (b) for bacteriochlorins that bear two carboethoxy groups, M = Ni, Cu, Zn, Pd, Cd, InCl, and Sn (but not Mg, Al, or Au); and (c) a bacteriochlorin with four carboethoxy groups was metalated with Mg (other metals were not examined). Altogether, 15 metallobacteriochlorins were isolated and characterized. Single-crystal X-ray analysis of 8,8,18,18-tetramethylbacteriochlorin reveals the core geometry provided by the four nitrogen atoms is rectangular; the difference in length of the two sides is ∼0.08 Å. Electronic characteristics of (metal-free) bacteriochlorins were probed through electrochemical measurements along with density functional theory calculation of the energies of the frontier molecular orbitals. The photophysical properties (fluorescence yields, triplet yields, singlet and triplet excited-state lifetimes) of the zinc bacteriochlorins are generally similar to those of the metal-free analogues, and to those of the native chromophores bacteriochlorophyll a and bacteriopheophytin a. The availability of diverse metallobacteriochlorins should prove useful in a variety of fundamental photochemical studies and applications.
Co-reporter:Joseph W. Springer;Kaitlyn M. Faries;James R. Diers;Chinnasamy Muthiah;Olga Mass;Hooi Ling Kee;Christine Kirmaier;Jonathan S. Lindsey;David F. Bocian
Photochemistry and Photobiology 2012 Volume 88( Issue 3) pp:651-674
Publication Date(Web):
DOI:10.1111/j.1751-1097.2012.01083.x

Abstract

Assessing the effects of substituents on the spectra of chlorophylls is essential for gaining a deep understanding of photosynthetic processes. Chlorophyll a and b differ solely in the nature of the 7-substituent (methyl versus formyl), whereas chlorophyll a and d differ solely in the 3-substituent (vinyl versus formyl), yet have distinct long-wavelength absorption maxima: 665 (a) 646 (b) and 692 nm (d). Herein, the spectra, singlet excited-state decay characteristics, and results from DFT calculations are examined for synthetic chlorins and 131-oxophorbines that contain ethynyl, acetyl, formyl and other groups at the 3-, 7- and/or 13-positions. Substituent effects on the absorption spectra are well accounted for using Gouterman’s four-orbital model. Key findings are that (1) the dramatic difference in auxochromic effects of a given substituent at the 7- versus3- or 13-positions primarily derives from relative effects on the LUMO+1 and LUMO; (2) formyl at the 7- or 8-position effectively “porphyrinizes” the chlorin and (3) the substituent effect increases in the order of vinyl < ethynyl < acetyl < formyl. Thus, the spectral properties are governed by an intricate interplay of electronic effects of substituents at particular sites on the four frontier MOs of the chlorin macrocycle.

Co-reporter:Michael Krayer ; Eunkyung Yang ; Han-Je Kim ; Hooi Ling Kee ; Richard M. Deans ; Camille E. Sluder ; James R. Diers ; Christine Kirmaier ; David F. Bocian ; Dewey Holten ;Jonathan S. Lindsey
Inorganic Chemistry 2011 Volume 50(Issue 10) pp:4607-4618
Publication Date(Web):April 13, 2011
DOI:10.1021/ic200325d
Bacteriochlorins have wide potential in photochemistry because of their strong absorption of near-infrared light, yet metallobacteriochlorins traditionally have been accessed with difficulty. Established acid-catalysis conditions [BF3·OEt2 in CH3CN or TMSOTf/2,6-di-tert-butylpyridine in CH2Cl2] for the self-condensation of dihydrodipyrrin-acetals (bearing a geminal dimethyl group in the pyrroline ring) afford stable free base bacteriochlorins. Here, InBr3 in CH3CN at room temperature was found to give directly the corresponding indium bacteriochlorin. Application of the new acid catalysis conditions has afforded four indium bacteriochlorins bearing aryl, alkyl/ester, or no substituents at the β-pyrrolic positions. The indium bacteriochlorins exhibit (i) a long-wavelength absorption band in the 741−782 nm range, which is shifted bathochromically by 22−32 nm versus the analogous free base species, (ii) fluorescence quantum yields (0.011−0.026) and average singlet lifetime (270 ps) diminished by an order of magnitude versus that (0.13−0.25; 4.0 ns) for the free base analogues, and (iii) higher average yield (0.9 versus 0.5) yet shorter average lifetime (30 vs 105 μs) of the lowest triplet excited state compared to the free base compounds. The differences in the excited-state properties of the indium chelates versus free base bacteriochlorins derive primarily from a 30-fold greater rate constant for S1 → T1 intersystem crossing, which stems from the heavy-atom effect on spin−orbit coupling. The trends in optical properties of the indium bacteriochlorins versus free base analogues, and the effects of 5-OMe versus 5-H substituents, correlate well with frontier molecular-orbital energies and energy gaps derived from density functional theory calculations. Collectively the synthesis, photophysical properties, and electronic characteristics of the indium bacteriochlorins and free base analogues reported herein should aid in the further design of such chromophores for diverse applications.
Co-reporter:Eunkyung Yang, Christine Kirmaier, Michael Krayer, Masahiko Taniguchi, Han-Je Kim, James R. Diers, David F. Bocian, Jonathan S. Lindsey, and Dewey Holten
The Journal of Physical Chemistry B 2011 Volume 115(Issue 37) pp:10801-10816
Publication Date(Web):August 29, 2011
DOI:10.1021/jp205258s
Bacteriochlorins, which are tetrapyrrole macrocycles with two reduced pyrrole rings, are Nature’s near-infrared (NIR) absorbers (700–900 nm). The strong absorption in the NIR region renders bacteriochlorins excellent candidates for a variety of applications including solar light harvesting, flow cytometry, molecular imaging, and photodynamic therapy. Natural bacteriochlorins are inherently unstable due to oxidative conversion to the chlorin (one reduced pyrrole ring) or the porphyrin. The natural pigments are also only modestly amenable to synthetic manipulation, owing to a nearly full complement of substituents on the macrocycle. Recently, a new synthetic methodology has afforded access to stable synthetic bacteriochlorins wherein a wide variety of substituents can be appended to the macrocycle at preselected locations. Herein, the spectroscopic and photophysical properties of 33 synthetic bacteriochlorins are investigated. The NIR absorption bands of the chromophores range from ∼700 to ∼820 nm; the lifetimes of the lowest excited singlet state range from ∼2 to ∼6 ns; the fluorescence quantum yields range from ∼0.05 to ∼0.25; and the yield of the lowest triplet excited state is ∼0.5. The spectroscopic/photophysical studies of the bacteriochlorins are accompanied by density functional theory (DFT) calculations that probe the characteristics of the frontier molecular orbitals. The DFT calculations indicate that the impact of substituents on the spectral properties of the molecules derives primarily from effects on the lowest unoccupied molecular orbital. Collectively, the studies show how the palette of synthetic bacteriochlorins extends the properties of the native photosynthetic pigments (bacteriochlorophylls). The studies have also elucidated design principles for tuning the spectral and photophysical characteristics as required for a wide variety of photochemical applications.
Co-reporter:James R. Diers ; Masahiko Taniguchi ; Dewey Holten ; Jonathan S. Lindsey ;David F. Bocian
Journal of the American Chemical Society 2010 Volume 132(Issue 34) pp:12121-12132
Publication Date(Web):August 6, 2010
DOI:10.1021/ja105082d
Understanding hole/electron-transfer processes among interacting constituents of multicomponent molecular architectures is central to the fields of artificial photosynthesis and molecular electronics. One strategy for examining ground-state hole/electron transfer in oxidized tetrapyrrolic arrays entails analysis of the hyperfine interactions observed in the electron paramagnetic resonance (EPR) spectrum of the π-cation radical. Herein, it is demonstrated that 203Tl/205Tl hyperfine “clocks” are greatly superior to those provided by 1H, 14N, or 13C owing to the fact that the 203Tl/205Tl hyperfine couplings are much larger (15−25 G) than those of the 1H, 14N, or 13C nuclei (1−6 G). The large 203Tl/205Tl hyperfine interactions permit accurate simulations of the EPR spectra and the extraction of specific rates of hole/electron transfer. The 203Tl/205Tl hyperfine clock strategy is applied to a series of seven porphyrin dyads. All of the dyads are joined at a meso position of the porphyrin macrocycle via linkers of a range of lengths and composition (diphenylethyne, diphenylbutadiyne, and (p-phenylene)n, where n = 1−4); substituents such as mesityl at the nonlinking meso positions are employed to provide organic solubility. The hole/electron-transfer time constants are in the hundreds of picoseconds to sub-10 ns regime, depending on the specific porphyrin and/or linker. Density functional theory calculations on the constituents of the dyads are consistent with the view that the relative energies of the porphyrin versus linker highest occupied molecular orbitals strongly influence the hole/electron-transfer rates. Variable-temperature EPR studies further demonstrate that the hole/electron-transfer process is at best weakly activated (12−15 kJ mol−1) at room temperature and somewhat below. At lower temperatures, the process is essentially activationless. The weak activation is attributed to restricted torsional motions of the phenyl rings of the linker. Collectively, the studies provide the physical basis for the rational design of multicomponent architectures for efficient hole/electron transfer.
Co-reporter:Masahiko Taniguchi, Olga Mass, Paul D. Boyle, Qun Tang, James R. Diers, David F. Bocian, Dewey Holten, Jonathan S. Lindsey
Journal of Molecular Structure 2010 Volume 979(1–3) pp:27-45
Publication Date(Web):27 August 2010
DOI:10.1016/j.molstruc.2010.05.035
Understanding the changes in molecular structure of tetrapyrrole macrocycles upon derivatization of the organic framework is essential for diverse studies ranging from metal complexation to formation of supramolecular assemblies. New, sparsely substituted free base chlorin, 17-oxochlorin, phorbine and 131-oxophorbine macrocycles provide benchmarks for naturally occurring hydroporphyrins and have been examined here by X-ray crystallography, resonance Raman spectroscopy, and density functional theoretical (DFT) calculations. The macrocycles contain no substituents other than a geminal-dimethyl group attached to the reduced, pyrroline ring. The X-ray studies indicate that the benchmark compounds exhibit only slight distortion from planarity, which increases along the series porphine < chlorin < oxochlorin < phorbine < oxophorbine. The elongated CβCβ bond distance due to sp3 versus sp2 hybridization in the pyrroline ring (ring D) of the (oxo)chlorins and (oxo)phorbines (1.52–1.54 Å) versus that of porphine (1.35 Å) is accompanied by altered bond angles in ring D. Introduction of ring E (exocyclic ring) in a chlorin to give the phorbine or oxophorbine causes alteration of the bond angles at many sites in the framework of the macrocycle; for example, the bond angles of N3C14C15 in the (oxo)phorbine are widened by ∼11° compared to those of porphine or the analogous sparsely substituted chlorin. As a result, the shape of the macrocycle core changes along the series of porphine (nearly square), (oxo)chlorin (kite-shaped), and (oxo)phorbine (right-angled trapezoid), and the core size increases in the order porphine < phorbine ∼ oxophorbine < oxochlorin ∼ chlorin. Comparison of the bond distances and angles in ring E of the phorbine versus oxophorbine indicates that the shortening of the C13C131 bond owing to the presence of the oxo-group is quite small, only 0.024 Å; thus, the unsymmetrical structure of ring E does not appear to be due to conjugation with the C131O group but may be a characteristic feature of the (oxo)phorbine framework. The X-ray data further indicate that the lengths of the oxochlorin C17O and oxophorbine C131O groups are essentially identical, a result also predicted by DFT calculations. Regardless, the observed frequencies for the stretching vibrations of the C17O (1721 cm−1) and C131O (1701 cm−1) groups are different and suggest that conjugation of the latter group with the π-system of the macrocycle is greater than that of the former group. Collectively, the studies provide new insights into the individual factors that give rise to the overall structural characteristics of various macrocycles.
Co-reporter:Hee-eun Song;Masahiko Taniguchi;Christine Kirmaier;David F. Bocian;Jonathan S. Lindsey
Photochemistry and Photobiology 2009 Volume 85( Issue 3) pp:693-704
Publication Date(Web):
DOI:10.1111/j.1751-1097.2008.00471.x

Abstract

A new strategy is described and implemented for determining the rates of hole-transfer between equivalent porphyrins in multiporphyrin architectures. The approach allows access to these rates between sites that are not the most easily oxidized components of the array. The specific architectures investigated with this new strategy are triads consisting of one zinc porphyrin (Zn) and two free base porphyrins (Fb). The triads employ a diphenylethyne linker (ZnFbFbU) and a phenylene linker (ZnFbFbΦ). The zinc porphyrin is selectively oxidized to produce Zn+FbFb, the free base porphyrins are excited to produce the excited-state mixture Zn+Fb*Fb and Zn+FbFb*, and the subsequent dynamics are monitored by ultrafast absorption spectroscopy. The system evolves by a combination of energy- and hole-transfer processes involving (adjacent and nonadjacent) zinc and free base porphyrin constituents that are complete within 100 ps of excitation; the rate constants of many of these processes are derived from prior studies of the oxidized forms of the benchmark dyads (ZnFbU and ZnFbΦ). One of the excited-state decay channels produces the metastable state ZnFbFb+ that decays to a second metastable state ZnFb+Fb by the target hole-transfer process, followed by rapid hole transfer to produce the Zn+FbFb thermodynamic ground state of the system. The rate constant for hole transfer between the free base porphyrins in the oxidized ZnFbFb triads is found to be (0.5 ns)−1 and (0.6 ns)−1 across phenylene and diphenylethyne linkers, respectively. These rate constants are comparable to those recently measured, using a related but distinct strategy, for ground-state hole transfer between zinc porphyrins in oxidized ZnZnFb triads. The two complementary strategies provide unique approaches for probing hole transfer between equivalent sites in multiporphyrin arrays, with the choice of method being guided by the particular target process and the ease of synthesis of the necessary architectures.

Co-reporter:Hooi Ling Kee;James R. Diers;Marcin Ptaszek;Chinnasamy Muthiah;Dazhong Fan;Jonathan S. Lindsey;David F. Bocian
Photochemistry and Photobiology 2009 Volume 85( Issue 4) pp:909-920
Publication Date(Web):
DOI:10.1111/j.1751-1097.2008.00532.x

Abstract

The photophysical properties of two energy-transfer dyads that are potential candidates for near-infrared (NIR) imaging probes are investigated as a function of solvent polarity. The dyads (FbC-FbB and ZnC-FbB) contain either a free base (Fb) or zinc (Zn) chlorin (C) as the energy donor and a free base bacteriochlorin (B) as the energy acceptor. The dyads were studied in toluene, chlorobenzene, 1,2-dichlorobenzene, acetone, acetonitrile and dimethylsulfoxide (DMSO). In both dyads, energy transfer from the chlorin to bacteriochlorin occurs with a rate constant of ∼(5–10 ps)−1 and a yield of >99% in nonpolar and polar media. In toluene, the fluorescence yields (Φf = 0.19) and singlet excited-state lifetimes (τ∼5.5 ns) are comparable to those of the benchmark bacteriochlorin. The fluorescence yield and excited-state lifetime decrease as the solvent polarity increases, with quenching by intramolecular electron (or hole) transfer being greater for FbC-FbB than for ZnC-FbB in a given solvent. For example, the Φf and τ values for FbC-FbB in acetone are 0.055 and 1.5 ns and in DMSO are 0.019 and 0.28 ns, whereas those for ZnC-FbB in acetone are 0.12 and 4.5 ns and in DMSO are 0.072 and 2.4 ns. The difference in fluorescence properties of the two dyads in a given polar solvent is due to the relative energies of the lowest energy charge-transfer states, as assessed by ground-state redox potentials and supported by molecular-orbital energies derived from density functional theory calculations. Controlling the extent of excited-state quenching in polar media will allow the favorable photophysical properties of the chlorin–bacteriochlorin dyads to be exploited in vivo. These properties include very large Stokes shifts (85 nm for FbC-FbB, 110 nm for ZnC-FbB) between the red-region absorption of the chlorin and the NIR fluorescence of the bacteriochlorin (λf = 760 nm), long bacteriochlorin excited-state lifetime (∼5.5 ns), and narrow (≤20 nm) absorption and fluorescence bands. The latter will facilitate selective excitation/detection and multiprobe applications using both intensity- and lifetime-imaging techniques.

Co-reporter:Hee-eun Song, Christine Kirmaier, James R. Diers, Jonathan S. Lindsey, David F. Bocian and Dewey Holten
The Journal of Physical Chemistry B 2009 Volume 113(Issue 1) pp:54-63
Publication Date(Web):December 9, 2008
DOI:10.1021/jp8060637
The mechanisms and dynamics of quenching of a photoexcited free base porphyrin (Fb*) covalently linked to a nearby oxidized zinc porphyrin (Zn+) have been investigated in a set of five dyads using time-resolved absorption spectroscopy. The dyads include porphyrins joined at the meso-positions by a diphenylethyne linker or a diarylethyne linker with 2,6-dimethyl substitution on either one or both of the aryl rings. Another dyad is linked at the β-pyrrole positions of the porphyrins via a diphenylethyne linker. The type of linker and attachment site modulate the interporphyrin through-bond electronic coupling via steric hindrance (porphyrin-linker orbital overlap) and attachment motif (porphyrin electron density at the connection site). For each ZnFb dyad, the zinc porphyrin is selectively electrochemically oxidized (to produce Zn+Fb), the free base porphyrin is selectively excited with a 130 fs flash (to produce Zn+Fb*), and the subsequent dynamics monitored. The Zn+Fb* excited state has a lifetime of ∼3 to ∼30 ps (depending on the linker steric hindrance and attachment site) and decays by parallel excited-state energy- and hole-transfer pathways. The relative yields of the two channels depend on a number of factors including the linker-mediated through-bond electronic coupling and a modest (≤20%) Förster through-space contribution for the energy-transfer route. One product of Zn+Fb* decay is the metastable ground-state ZnFb+, which decays to the Zn+Fb preflash state by ground-state hole transfer with a linker-dependent rate constant of (20 ps)−1 to (150 ps)−1. Collectively, these results provide a detailed understanding of the mechanism and dynamics of quenching of excited porphyrins by nearby oxidized sites, as well as the dynamics of ground-state hole transfer between nonequivalent porphyrins (Zn and Fb). The findings also lay the foundation for the study of ground-state hole transfer between identical porphyrins (e.g., Zn/Zn, Fb/Fb) in larger multiporphyrin arrays wherein a hole is selectively placed via electrochemical oxidation.
Co-reporter:Hee-eun Song, Masahiko Taniguchi, Markus Speckbacher, Lianhe Yu, David F. Bocian, Jonathan S. Lindsey and Dewey Holten
The Journal of Physical Chemistry B 2009 Volume 113(Issue 23) pp:8011-8019
Publication Date(Web):May 15, 2009
DOI:10.1021/jp902183g
The dynamics and pathways for excited-state energy transfer in three dyads and five triads composed of combinations of zinc, magnesium, and free base porphyrins (denoted Zn, Mg, Fb) connected by p-phenylene linkers have been investigated. The processes in the triads include energy transfer between adjacent nonequivalent porphyrins, between adjacent equivalent porphyrins, and between nonadjacent nonequivalent porphyrins using the intervening porphyrin as a superexchange mediator. In the case of the triad ZnZnFbΦ, excitation of the zinc porphyrin (to yield Zn*) ultimately leads to production of the excited free base porphyrin (Fb*) via the three processes with the derived rate constants as follows: (2.8 ps)−1 for ZnZn*Fb → ZnZnFb*, (4 ps)−1 for Zn*ZnFb ⇆ ZnZn*Fb, and (14 ps)−1 for Zn*ZnFb → ZnZnFb*. These results and those obtained for the other four triads show that energy transfer between nonadjacent sites is significant and is only 5−7-fold slower than between adjacent sites. This same scaling was found previously for arrays joined via diphenylethyne linkers. Simulations of the energy-transfer properties of fictive dodecameric arrays based on the data reported herein show that nonadjacent transfer steps make a significant contribution to the observed performance of such larger molecular architectures. Collectively, these results indicate that energy transfer between nonadjacent sites has important implications for the design of multichromophore arrays for molecular-photonic and solar-energy applications.
Co-reporter:Hee-eun Song, Masahiko Taniguchi, James R. Diers, Christine Kirmaier, David F. Bocian, Jonathan S. Lindsey and Dewey Holten
The Journal of Physical Chemistry B 2009 Volume 113(Issue 52) pp:16483-16493
Publication Date(Web):December 4, 2009
DOI:10.1021/jp9072558
The excited-state photodynamics of the neutral and one-electron-oxidized forms of five porphyrin dyads were studied in benzonitrile containing tetrabutylammonium hexafluorophosphate as the supporting electrolyte. Each dyad contains a zinc porphyrin (Zn) and a free base porphyrin (Fb) joined by a linear biphenylene (Φ2), terphenylene (Φ3), quaterphenylene (Φ4), diphenylbutadiyne (L), or phenylethyne (E) linker (ZnFbΦ2, ZnFbΦ3, ZnFbΦ4, ZnFbL, ZnFbE). The findings along with recent results on the neutral and oxidized forms of ZnFb dyads containing a diphenylethyne or phenylene linker (ZnFbU, ZnFbΦ) and steric hindrance to porphyrin−linker internal rotation at one or both ends of a diarylethyne linker (ZnFbD, ZnFbP, ZnFbB) give insights into the effects of linker characteristics (length, orbital energies, orbital overlap with the porphyrins) on the rate constants for excited-state energy transfer, excited-state hole transfer, and ground-state hole transfer. Analysis of the results is aided by density functional theory molecular orbital calculations and Förster energy-transfer calculations. Although the rate constants for linker-mediated through-bond excited-state energy transfer can be modulated significantly using a number of molecular design criteria (e.g., linker characteristics, interplay between porphyrin orbital characteristics, and linker attachment site), ground-state hole transfer, which also occurs via a linker-mediated through-bond electron-exchange mechanism, is primarily affected by the free-energy driving force for the process as dictated by the redox characteristics of the interacting porphyrins. The insights gained from this study should aid in the design of next-generation multichromophore arrays for solar energy applications.
Co-reporter:K. Eszter Borbas, Hooi Ling Kee, Dewey Holten and Jonathan S. Lindsey  
Organic & Biomolecular Chemistry 2008 vol. 6(Issue 1) pp:187-194
Publication Date(Web):23 Nov 2007
DOI:10.1039/B715072E
A broad range of applications requires access to porphyrins that are compact, water-soluble, and bioconjugatable. A symmetrically branched hydrocarbon chain (‘swallowtail’) bearing polar end groups imparts high (>10 mM) aqueous solubility upon incorporation at one of the meso positions of a trans-AB-porphyrin. Two such swallowtail-porphyrins (1a, 1b) equipped with a conjugatable group (carboxylic acid, bromophenyl) have been prepared previously. The synthesis of three new water-soluble trans-AB-porphyrins is reported, where each porphyrin bears a diphosphonate-terminated swallowtail group and an amino (2a), acetamido (2b), or iodoacetamido (2c) group. The amine affords considerable versatility for functionalization. The iodoacetamide provides a sulfhydryl-reactive site for bioconjugation. Porphyrins 2a–2c were fully characterized in aqueous solution by 1H NMR spectroscopy (in D2O), ESI-MS, static absorption spectroscopy, and static and time-resolved fluorescence spectroscopy. Porphyrins 2a–2c exhibit characteristic porphyrin absorption and emission bands in aqueous solution, with a strong, sharp absorption band in the blue region (∼401 nm) and emission in the red region (∼624, 686 nm). Porphyrin 2b in aqueous phosphate buffer or phosphate-buffered saline solution exhibits a fluorescence quantum yield of ∼0.04 and an excited singlet-state lifetime of ∼11 ns. Collectively, the facile synthesis, amenability to bioconjugation, large spacing between the main absorption and fluorescence features, and long singlet excited-state lifetime make this molecular design quite attractive for a range of biomedical applications.
Co-reporter:Chinnasamy Muthiah;Hooi Ling Kee;James R. Diers;Dazhong Fan;Marcin Ptaszek;David F. Bocian;Jonathan S. Lindsey
Photochemistry and Photobiology 2008 Volume 84( Issue 3) pp:786-801
Publication Date(Web):
DOI:10.1111/j.1751-1097.2007.00258.x

Abstract

Understanding energy transfer among hydroporphyrins is of fundamental interest and essential for a wide variety of photochemical applications. Toward this goal, a synthetic free base ethynylphenylchlorin has been coupled with a synthetic free base bromobacteriochlorin to give a phenylethyne-linked chlorin–bacteriochlorin dyad (FbC-pe-FbB). The chlorin and bacteriochlorin are each stable toward adventitious oxidation because of the presence of a geminal dimethyl group in each reduced pyrrole ring. A combination of static and transient optical spectroscopic studies indicate that excitation into the Qy band of the chlorin constituent (675 nm) of FbC-pe-FbB in toluene results in rapid energy transfer to the bacteriochlorin constituent with a rate of ∼(5 ps)−1 and efficiency of >99%. The excited bacteriochlorin resulting from the energy-transfer process in FbC-pe-FbB has essentially the same fluorescence characteristics as an isolated monomeric reference compound, namely a narrow (12 nm fwhm) fluorescence emission band at 760 nm and a long-lived (5.4 ns) Qy excited state that exhibits a significant fluorescence quantum yield (Φf = 0.19). Förster calculations are consistent with energy transfer in FbC-pe-FbB occurring predominantly by a through-space mechanism. The energy-transfer characteristics of FbC-pe-FbB are compared with those previously obtained for analogous phenylethyne-linked dyads consisting of two porphyrins or two oxochlorins. The comparisons among the sets of dyads are facilitated by density functional theory calculations that elucidate the molecular-orbital characteristics of the energy donor and acceptor constituents. The electron-density distributions in the frontier molecular orbitals provide insights into the through-bond electronic interactions that can also contribute to the energy-transfer process in the different types of dyads.

Co-reporter:Hooi Ling Kee;Ralph Nothdurft;Chinnasamy Muthiah;James R. Diers;Dazhong Fan;Marcin Ptaszek;David F. Bocian;Jonathan S. Lindsey;Joseph P. Culver
Photochemistry and Photobiology 2008 Volume 84( Issue 5) pp:1061-1072
Publication Date(Web):
DOI:10.1111/j.1751-1097.2008.00409.x

Abstract

New classes of synthetic chlorin and bacteriochlorin macrocycles are characterized by narrow spectral widths, tunable absorption and fluorescence features across the red and near-infrared (NIR) regions, tunable excited-state lifetimes (<1 to >10 ns) and chemical stability. Such properties make dyad constructs based on synthetic chlorin and bacteriochlorin units intriguing candidates for the development of NIR molecular imaging probes. In this study, two such dyads (FbC-FbB and ZnC-FbB) were investigated. The dyads contain either a free base (Fb) or zinc (Zn) chlorin (C) as the energy donor and a free base bacteriochlorin (B) as the energy acceptor. In both constructs, energy transfer from the chlorin to bacteriochlorin occurs with a rate constant of ∼(5 ps)−1 and a yield of >99%. Thus, each dyad effectively behaves as a single chromophore with an exceptionally large Stokes shift (85 nm for FbC-FbB and 110 nm for ZnC-FbB) between the red-region absorption of the chlorin and the NIR fluorescence of the bacteriochlorin (λf = 760 nm, Φf = 0.19, τ ∼ 5.5 ns in toluene). The long-wavelength transitions (absorption, emission) of each constituent of each dyad exhibit narrow (≤20 nm) spectral widths. The narrow spectral widths enabled excellent selectivity in excitation and detection of one chlorin–bacteriochlorin energy-transfer dyad in the presence of the other upon diffuse optical tomography of solution-phase phantoms.

Co-reporter:K. Eszter Borbas, Hooi Ling Kee, Dewey Holten and Jonathan S. Lindsey
Organic & Biomolecular Chemistry 2008 - vol. 6(Issue 1) pp:NaN194-194
Publication Date(Web):2007/11/23
DOI:10.1039/B715072E
A broad range of applications requires access to porphyrins that are compact, water-soluble, and bioconjugatable. A symmetrically branched hydrocarbon chain (‘swallowtail’) bearing polar end groups imparts high (>10 mM) aqueous solubility upon incorporation at one of the meso positions of a trans-AB-porphyrin. Two such swallowtail-porphyrins (1a, 1b) equipped with a conjugatable group (carboxylic acid, bromophenyl) have been prepared previously. The synthesis of three new water-soluble trans-AB-porphyrins is reported, where each porphyrin bears a diphosphonate-terminated swallowtail group and an amino (2a), acetamido (2b), or iodoacetamido (2c) group. The amine affords considerable versatility for functionalization. The iodoacetamide provides a sulfhydryl-reactive site for bioconjugation. Porphyrins 2a–2c were fully characterized in aqueous solution by 1H NMR spectroscopy (in D2O), ESI-MS, static absorption spectroscopy, and static and time-resolved fluorescence spectroscopy. Porphyrins 2a–2c exhibit characteristic porphyrin absorption and emission bands in aqueous solution, with a strong, sharp absorption band in the blue region (∼401 nm) and emission in the red region (∼624, 686 nm). Porphyrin 2b in aqueous phosphate buffer or phosphate-buffered saline solution exhibits a fluorescence quantum yield of ∼0.04 and an excited singlet-state lifetime of ∼11 ns. Collectively, the facile synthesis, amenability to bioconjugation, large spacing between the main absorption and fluorescence features, and long singlet excited-state lifetime make this molecular design quite attractive for a range of biomedical applications.
Co-reporter:Kanumuri Ramesh Reddy, Jianbing Jiang, Michael Krayer, Michelle A. Harris, Joseph W. Springer, Eunkyung Yang, Jieying Jiao, Dariusz M. Niedzwiedzki, Dinesh Pandithavidana, Pamela S. Parkes-Loach, Christine Kirmaier, Paul A. Loach, David F. Bocian, Dewey Holten and Jonathan S. Lindsey
Chemical Science (2010-Present) 2013 - vol. 4(Issue 5) pp:NaN2053-2053
Publication Date(Web):2013/03/05
DOI:10.1039/C3SC22317E
The challenge of creating both pigment building blocks and scaffolding to organize a large number of such pigments has long constituted a central impediment to the construction of artificial light-harvesting architectures. Light-harvesting (LH) antennas in photosynthetic bacteria are formed in a two-tiered self-assembly process wherein (1) a peptide dyad containing two bacteriochlorophyll a molecules forms, and (2) the dyads associate to form cyclic oligomers composed of 8 or 9 dyads in LH2 and 15 or 16 in LH1 of purple photosynthetic bacteria. While such antenna systems generally have near-quantitative transfer of excitation energy among pigments, only a fraction of the solar spectrum is typically absorbed. A platform architecture for study of light-harvesting phenomena has been developed that employs native photosynthetic peptide analogs, native bacteriochlorophyll a, and synthetic near-infrared-absorbing bacteriochlorins. Herein, the syntheses of 10 lipophilic bacteriochlorins are reported, of which 7 contain bioconjugatable handles (maleimide, iodoacetamide, formyl, carboxylic acid) for attachment to the peptide chassis. The bioconjugatable bacteriochlorins typically exhibit a long-wavelength absorption band in the range 710 to 820 nm, fluorescence yield of 0.1–0.2, and lifetime of the lowest singlet excited state of 2–5 ns. The α-helical structure of the native-like peptide is retained upon conjugation with a synthetic bacteriochlorin, as judged by single-reflection infrared studies. Static and time-resolved optical studies of the oligomeric biohybrid architectures in aqueous detergent solution reveal efficient (∼90%) excitation energy transfer from the attached bacteriochlorin to the native-like bacteriochlorophyll a sites. The biohybrid light-harvesting architectures thus exploit the self-constituting features of the natural systems yet enable versatile incorporation of members from a palette of synthetic chromophores, thereby opening the door to a wide variety of studies in artificial photosynthesis.
Co-reporter:Kunche Aravindu, Olga Mass, Pothiappan Vairaprakash, Joseph W. Springer, Eunkyung Yang, Dariusz M. Niedzwiedzki, Christine Kirmaier, David F. Bocian, Dewey Holten and Jonathan S. Lindsey
Chemical Science (2010-Present) 2013 - vol. 4(Issue 9) pp:NaN3477-3477
Publication Date(Web):2013/06/24
DOI:10.1039/C3SC51335A
The incorporation of amphiphilic tetrapyrrole macrocycles in organized media is of great value for a variety of fundamental photochemical studies, yet work to date has chiefly employed porphyrins rather than chlorins or bacteriochlorins. The latter absorb strongly in the red or near-infrared spectral region, respectively. Here, eight amphiphilic macrocycles (six chlorins and two bacteriochlorins) have been designed, synthesized and characterized; the compounds differ in long wavelength absorption (610–745 nm) and peripheral substituents (type of auxochrome, hydrophobic/hydrophilic groups). A methyl pyridinium or benzoic acid substituent at the 15-position provides a polar “tail” whereas a hydrophobic group distal thereto (in the chlorins) provides a lipophilic “head” for the spontaneous incorporation in organized media. The eight (bacterio)chlorins are characterized by static and time-resolved absorption and fluorescence spectroscopy in N,N-dimethylformamide (DMF) and three micellar environments (TX-100, CTAB, and SDS) as well as ultrafast transient absorption studies in DMF. In most cases, a long-lived excited singlet state was observed [free base chlorins (Φf = 0.14–0.20; τS = 7.9–12.1 ns; Φisc = 0.5), zinc chlorins (Φf = 0.08–0.19; τS = 2.0–3.4 ns; Φisc = 0.6–0.8) and free base bacteriochlorins (Φf = 0.06–0.16; τS = 1.8–4.6 ns; Φisc = 0.4)]. In the case of bacteriochlorins, minimal medium dependence was observed whereas changing the hydrophilic group from methyl pyridinium to benzoic acid increases the fluorescence yield and excited-state lifetime by 50%. In the case of chlorins, the zinc chelate with methyl pyridinium substitution exhibits substantial environmental dependence due to interaction of the solvent with the methyl pyridinium group and the central zinc metal. Collectively, the studies provide valuable information for the design of red or near-infrared absorbing chromophores for incorporation into amphiphilic environments such as micelles, membranes, or proteins.
Co-reporter:Michelle A. Harris, Pamela S. Parkes-Loach, Joseph W. Springer, Jianbing Jiang, Elizabeth C. Martin, Pu Qian, Jieying Jiao, Dariusz M. Niedzwiedzki, Christine Kirmaier, John D. Olsen, David F. Bocian, Dewey Holten, C. Neil Hunter, Jonathan S. Lindsey and Paul A. Loach
Chemical Science (2010-Present) 2013 - vol. 4(Issue 10) pp:NaN3933-3933
Publication Date(Web):2013/08/06
DOI:10.1039/C3SC51518D
Native length bacterial light-harvesting peptides carrying covalently attached designer chromophores have been created that self-assemble with native bacteriochlorophyll a (BChl a) to afford stable antennas with enhanced spectral coverage. Native (or native-like) α- and β-peptides interact with each other and BChl a to form a heterodimeric (αβ-dyad) unit that can then oligomerize to form biohybrid analogs of the bacterial core light-harvesting complex (LH1). Pairs of distinct synthetic chromophores were incorporated in αβ-dyads at selected distances from the BChl a target site (position 0). Two designs were explored. One design used green-yellow absorbing/emitting Oregon Green at the −34 position (toward the N-terminus relative to the BChl a coordination site) of β and orange-red absorbing/emitting Rhodamine Red at the −20 position of α, which combine with BChl a to give homogeneous oligomers. A second design used two different β-peptide conjugates, one with Oregon Green at the −34 position and the second with a near-infrared absorbing/emitting synthetic bacteriochlorin at the −14 position, which combine with α and BChl a to give a heterogeneous mixture of oligomers. The designs afford antennas with ∼45 to ∼60 pigments, provide enhanced spectral coverage across the visible and near-infrared regions relative to native antennas, and accommodate pigments at remote sites that contribute to solar light harvesting via an energy-transfer cascade. The efficiencies of energy-transfer to the BChl a target in the biohybrid antennas are comparable to native antennas, as revealed by static and time-resolved absorption and emission studies. The results show that the biohybrid approach, where designer chromophores are integrated via semisynthesis with native-like scaffolding, constitutes a versatile platform technology for rapid prototyping of antennas for solar energy capture without the laborious synthesis typically required for creating artificial photosynthetic light-harvesting architectures.
1H-PYRROLE-2-METHANAMINE, 5,5'-(PHENYLMETHYLENE)BIS[N,N-DIMETHYL-
1H-Pyrrole,1-(dibutylboryl)-2-(4-iodobenzoyl)-5-[1H-pyrrol-2-yl(2,4,6-trimethylphenyl)methyl]-
1H-PYRROLE, 2-[(Z)-2H-PYRROL-2-YLIDENE(2,4,6-TRIMETHYLPHENYL)METHYL]-
BENZALDEHYDE, 4-(2-OXOPROPYL)-
Benzaldehyde, 4-(1-acetyl-2-oxopropyl)-
4-(2-AMINO-4-OXOPENT-2-EN-3-YL)BENZALDEHYDE
Benzaldehyde, 4-(3,5-dimethyl-4-isoxazolyl)-