Seth M. Cohen

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Name: Cohen, Seth
Organization: University of California , USA
Department: Department of Chemistry and Biochemistry
Title: Professor(PhD)

TOPICS

Co-reporter:Seth M. Cohen
Journal of the American Chemical Society March 1, 2017 Volume 139(Issue 8) pp:2855-2855
Publication Date(Web):January 24, 2017
DOI:10.1021/jacs.6b11259
Metal–organic frameworks (MOFs) have rapidly grown into a major area of chemical research over the last two decades. MOFs represent the development of covalent chemistry “beyond the molecule” and into extended structures. MOFs also present an unprecedented scaffold for performing heterogeneous organic transformations in the solid state, allowing for deliberate and precise preparation of new materials. The development of these transformations has given rise to the “postsynthetic renaissance”, a suite of methods by which these materials can be transformed in a single-crystal-to-single-crystal manner. Postsynthetic modification, postsynthetic deprotection, postsynthetic exchange, postsynthetic insertion, and postsynthetic polymerization have exploited the unique features of both the organic and inorganic components of MOFs to create crystalline, porous solids of unique complexity and functionality.
Co-reporter:Le Wang, Curtis E. Moore, and Seth M. Cohen
Crystal Growth & Design December 6, 2017 Volume 17(Issue 12) pp:6174-6174
Publication Date(Web):October 23, 2017
DOI:10.1021/acs.cgd.7b01390
A Mn2+-based metal–organic framework (coordination porous framework-5, CPF-5) can serve as a crystalline sponge for single crystal X-ray structural characterization of a variety of compounds using a combination of coordinative alignment and second coordination sphere interactions (e.g., hydrogen bonding). This technique requires only a conventional X-ray source to obtain high quality crystallographic data.
Co-reporter:Yao Chen;Barry Lai;Zhenjie Zhang
Metallomics (2009-Present) 2017 vol. 9(Issue 3) pp:250-257
Publication Date(Web):2017/03/22
DOI:10.1039/C6MT00267F
With metalloproteins garnering increased interest as therapeutic targets, designing target-specific metalloprotein inhibitors (MPi) is of substantial importance. However, in many respects, the development and evaluation of MPi lags behind that of conventional small molecule therapeutics. Core concerns around MPi, such as target selectivity and potential disruption of metal ion homeostasis linger. Herein, we used a suite of analytical methods, including energy-dispersive X-ray spectroscopy (EDX), inductively coupled plasma atomic emission spectroscopy (ICP-OES), and synchrotron X-ray fluorescence microscopy (SXRF) to investigate the effect of several MPi on cellular metal ion distribution and homeostasis. The results reveal that at therapeutically relevant concentrations, the tested MPi have no significant effects on cellular metal ion content or distribution. In addition, the affinity of the metal-binding pharmacophore (MBP) utilized by the MPi does not have a substantial influence on the effect of the MPi on cellular metal distribution. These studies provide an important, original data set indicating that metal ion homeostasis is not notably perturbed by MPi, which should encourage the development of and aid in designing new MPi, guide MBP selection, and clarify the effect of MPi on the ‘metallome’.
Co-reporter:Yao Chen;Barry Lai;Zhenjie Zhang
Metallomics (2009-Present) 2017 vol. 9(Issue 3) pp:250-257
Publication Date(Web):2017/03/22
DOI:10.1039/C6MT00267F
With metalloproteins garnering increased interest as therapeutic targets, designing target-specific metalloprotein inhibitors (MPi) is of substantial importance. However, in many respects, the development and evaluation of MPi lags behind that of conventional small molecule therapeutics. Core concerns around MPi, such as target selectivity and potential disruption of metal ion homeostasis linger. Herein, we used a suite of analytical methods, including energy-dispersive X-ray spectroscopy (EDX), inductively coupled plasma atomic emission spectroscopy (ICP-OES), and synchrotron X-ray fluorescence microscopy (SXRF) to investigate the effect of several MPi on cellular metal ion distribution and homeostasis. The results reveal that at therapeutically relevant concentrations, the tested MPi have no significant effects on cellular metal ion content or distribution. In addition, the affinity of the metal-binding pharmacophore (MBP) utilized by the MPi does not have a substantial influence on the effect of the MPi on cellular metal distribution. These studies provide an important, original data set indicating that metal ion homeostasis is not notably perturbed by MPi, which should encourage the development of and aid in designing new MPi, guide MBP selection, and clarify the effect of MPi on the ‘metallome’.
Co-reporter:Christian Perez, Jing Li, Francesco Parlati, Matthieu Rouffet, Yuyong Ma, Andrew L. Mackinnon, Tsui-Fen Chou, Raymond J. Deshaies, and Seth M. Cohen
Journal of Medicinal Chemistry 2017 Volume 60(Issue 4) pp:
Publication Date(Web):February 13, 2017
DOI:10.1021/acs.jmedchem.6b01379
The proteasome plays a crucial role in degradation of normal proteins that happen to be constitutively or inducibly unstable, and in this capacity it plays a regulatory role. Additionally, it degrades abnormal/damaged/mutant/misfolded proteins, which serves a quality-control function. Inhibitors of the proteasome have been validated in the treatment of multiple myeloma, with several FDA-approved therapeutics. Rpn11 is a Zn2+-dependent metalloisopeptidase that hydrolyzes ubiquitin from tagged proteins that are trafficked to the proteasome for degradation. A fragment-based drug discovery (FBDD) approach was utilized to identify fragments with activity against Rpn11. Screening of a library of metal-binding pharmacophores (MBPs) revealed that 8-thioquinoline (8TQ, IC50 value ∼2.5 μM) displayed strong inhibition of Rpn11. Further synthetic elaboration of 8TQ yielded a small molecule compound (35, IC50 value ∼400 nM) that is a potent and selective inhibitor of Rpn11 that blocks proliferation of tumor cells in culture.
Co-reporter:Sergio Ayala, Jr.;Zhenjie Zhang
Chemical Communications 2017 vol. 53(Issue 21) pp:3058-3061
Publication Date(Web):2017/03/09
DOI:10.1039/C6CC10225E
The first polymer–MOF hybrid material (polyMOF) with a UiO-66 architecture is reported, prepared from polymers with varying alkyl spacers, molecular weights, and dispersities. With appropriate spacing, mesoporous UiO-66 polyMOF can be obtained having an uncommon, interlaced crystal morphology, suggesting that polyMOFs can be used to generate MOF materials with hierarchical architectures.
Co-reporter:Giulia E. M. Schukraft;Sergio Ayala, Jr.;Benjamin L. Dick
Chemical Communications 2017 vol. 53(Issue 77) pp:10684-10687
Publication Date(Web):2017/09/26
DOI:10.1039/C7CC04222A
The concept of isoreticular chemistry has become a core principle in metal–organic framework (MOF) materials. Isoreticular chemistry has shown that organic ligands of different sizes, but with a common geometry/symmetry can be used to generate MOFs of related topologies, but with expanded pore sizes and volumes. In this report, polymer–MOF hybrid materials (polyMOFs) with a UiO (UiO = University of Oslo) architecture are shown to adhere to the principle of isoreticular expansion, generating polyMOFs with large surface areas and enhanced stability.
Co-reporter:Xiao Yu;Le Wang
CrystEngComm (1999-Present) 2017 vol. 19(Issue 29) pp:4126-4136
Publication Date(Web):2017/07/27
DOI:10.1039/C7CE00398F
Metal–organic frameworks (MOFs) have attracted increasing attention for applications in heterogeneous photocatalysis. Modifications of metal nodes and organic linkers, as well as encapsulation of active species in the pores of MOFs enable the generation of photoactive materials for catalyzing organic transformations. MOF composites integrating noble metal nanoparticles or traditional photoactive semiconductors can combine the advantages of both materials, and also improve the photocatalytic performance via synergistic effects. In this Highlight, we discuss recent examples of photoactive MOFs and their use as photocatalysts for organic reactions.
Co-reporter:Benjamin L. Dick;Ashay Patel
JBIC Journal of Biological Inorganic Chemistry 2017 Volume 22( Issue 4) pp:605-613
Publication Date(Web):07 April 2017
DOI:10.1007/s00775-017-1454-3
The inhibition and binding of three metal-binding pharmacophores (MBPs), 2-hydroxycyclohepta-2,4,6-trien-1-one (tropolone), 2-mercaptopyridine-N-oxide (1,2-HOPTO), and 2-hydroxycyclohepta-2,4,6-triene-1-thione (thiotropolone) to human carbonic anhydrase II (hCAII) and a mutant protein hCAII L198G were investigated. These MBPs displayed bidentate coordination to the active site Zn(II) metal ion, but the MBPs respond to the mutation of L198G differently, as characterized by inhibition activity assays and X-ray crystallography. The L198G mutation increases the active site volume thereby decreasing the steric pressure exerted on MBPs upon binding, allowing changes in MBP coordination to be observed. When comparing the binding mode of tropolone to thiotropolone or 1,2-HOPTO (O,O versus O,S donor sets), structural modifications of the hCAII active site were shown to have a stronger effect on MBPs with an O,O versus O,S donor set. These findings were corroborated with density functional theory (DFT) calculations of model coordination complexes. These results suggest that the MBP binding geometry is a malleable interaction, particularly for certain ligands, and that the identity of the donor atoms influences the response of the ligand to changes in the protein active site environment. Understanding underlying interactions between a MBP and a metalloenzyme active site may aid in the design and development of potent metalloenzyme inhibitors.
Co-reporter:Xiao Yu and Seth M. Cohen
Journal of the American Chemical Society 2016 Volume 138(Issue 38) pp:12320-12323
Publication Date(Web):September 12, 2016
DOI:10.1021/jacs.6b06859
Synthesis of CF3-containing compounds is of great interest because of their broad use in the pharmaceutical and agrochemical industries. Herein, selective 2,2,2-trifluoroethylation of styrenes was catalyzed by Zr(IV)-based MOFs bearing visible-light photocatalysts in the form of Ir(III) polypyridyl complexes. When compared to the homogeneous Ir(III) catalyst, the MOF-based catalyst suppressed the dimerization of benzyl radicals, thus enhancing the selectivity of the desired hydroxytrifluoroethyl compounds.
Co-reporter:Jinxing Li, Xiao Yu, Mingli Xu, Wenjuan Liu, Elodie Sandraz, Hsin Lan, Joseph Wang, and Seth M. Cohen
Journal of the American Chemical Society 2016 Volume 139(Issue 2) pp:611-614
Publication Date(Web):December 19, 2016
DOI:10.1021/jacs.6b11899
Herein, we report that UiO-type (UiO = University of Oslo) metal–organic frameworks (MOFs) can be transformed into self-propelled micromotors by employing several different metal-based propulsion systems. Incorporation of a bipyridine ligand into the UiO-67 lattice transforms the crystallites, upon metalation, into single-site, metal-based catalytic “engines” to power the micromotors with chemical fuel. The “engine performance” (i.e., propulsion) of the single-site powered micromotors has been tuned by the choice of the metal ion utilized. In addition, a chemical “braking” system was achieved by adding chelating agents capable of sequestering the metal ion engines and thereby suppressing the catalytic activity, with different chelators displaying different deceleration capacities. These results demonstrate that MOFs can be powered by various engines and halted by different brakes, resulting in a high degree of motion design and control at the nanoscale.
Co-reporter:Teng-Hao Chen; Le Wang; Jonathan V. Trueblood; Vicki H. Grassian
Journal of the American Chemical Society 2016 Volume 138(Issue 30) pp:9646-9654
Publication Date(Web):July 12, 2016
DOI:10.1021/jacs.6b04971
A new strategy was developed by using a polymer ligand, poly(isophthalic acid)(ethylene oxide), to modulate the growth of metal–organic polyhedra (MOP) crystals. This macromolecular modulator can effectively control the crystal habit of several different Cu24L24 (L = isophthalic acid derivatives) MOPs. The polymer also directed the formation of MOP structures under reaction conditions that only produce metal–organic frameworks in the absence of modulator. Moreover, the polymer also enabled the deposition of MOP crystals on glass surfaces. This macromolecular modulator strategy provides an innovative approach to control the morphology and assembly of MOP particles.
Co-reporter:Jared B. DeCoste, Michael S. Denny, Jr., Gregory W. Peterson, John J. Mahle and Seth M. Cohen  
Chemical Science 2016 vol. 7(Issue 4) pp:2711-2716
Publication Date(Web):13 Jan 2016
DOI:10.1039/C5SC04368A
Metal–organic frameworks (MOFs) in their free powder form have exhibited superior capacities for many gases when compared to other materials, due to their tailorable functionality and high surface areas. Specifically, the MOF HKUST-1 binds small Lewis bases, such as ammonia, with its coordinatively unsaturated copper sites. We describe here the use of HKUST-1 in mixed-matrix membranes (MMMs) prepared from polyvinylidene difluoride (PVDF) for the removal of ammonia gas. These MMMs exhibit ammonia capacities similar to their hypothetical capacities based on the weight percent of HKUST-1 in each MMM. HKUST-1 in its powder form is unstable toward humid conditions; however, upon exposure to humid environments for prolonged periods of time, the HKUST-1 MMMs exhibit outstanding structural stability, and maintain their ammonia capacity. Overall, this study has achieved all of the critical and combined elements for real-world applications of MOFs: high MOF loadings, fully accessible MOF surfaces, enhanced MOF stabilization, recyclability, mechanical stability, and processability. This study is a critical step in advancing MOFs to a stable, usable, and enabling technology.
Co-reporter:Xiaoping Zhang, Zhenjie Zhang, Jake Boissonnault and Seth M. Cohen  
Chemical Communications 2016 vol. 52(Issue 55) pp:8585-8588
Publication Date(Web):14 Jun 2016
DOI:10.1039/C6CC03190K
Herein, we utilize a new, squaramide-based ligand, combined with a postsynthetic exchange (PSE) synthetic approach to prepare a series of Cu(II)–squaramide MOFs that are active catalysts for the Friedel–Crafts reaction.
Co-reporter:Kevin B. Daniel, Cassandra E. Callmann, Nathan C. Gianneschi and Seth M. Cohen  
Chemical Communications 2016 vol. 52(Issue 10) pp:2126-2128
Publication Date(Web):15 Dec 2015
DOI:10.1039/C5CC09164K
Micellar nanoparticles were designed to be responsive to matrix metalloproteinases (MMPs) and reactive oxygen species (ROS), each of which is upregulated in the pathology of inflammatory diseases. The amphiphilic polymer-based nanoparticle system consists of a hydrophilic shell responsible for particle morphology change and aggregation, together with a hydrophobic block designed to release cargo in the presence of ROS.
Co-reporter:Cy V. Credille; Yao Chen
Journal of Medicinal Chemistry 2016 Volume 59(Issue 13) pp:6444-6454
Publication Date(Web):June 11, 2016
DOI:10.1021/acs.jmedchem.6b00628
The influenza virus is responsible for millions of cases of severe illness annually. Yearly variance in the effectiveness of vaccination, coupled with emerging drug resistance, necessitates the development of new drugs to treat influenza infections. One attractive target is the RNA-dependent RNA polymerase PA subunit. Herein we report the development of inhibitors of influenza PA endonuclease derived from lead compounds identified from a metal-binding pharmacophore (MBP) library screen. Pyromeconic acid and derivatives thereof were found to be potent inhibitors of endonuclease. Guided by modeling and previously reported structural data, several sublibraries of molecules were elaborated from the MBP hits. Structure–activity relationships were established, and more potent molecules were designed and synthesized using fragment growth and fragment merging strategies. This approach ultimately resulted in the development of a lead compound with an IC50 value of 14 nM, which displayed an EC50 value of 2.1 μM against H1N1 influenza virus in MDCK cells.
Co-reporter:Seth M. Cohen, Zhenjie Zhang, and Jake A. Boissonnault
Inorganic Chemistry 2016 Volume 55(Issue 15) pp:7281
Publication Date(Web):May 27, 2016
DOI:10.1021/acs.inorgchem.6b00828
Metal–organic frameworks (MOFs) are being increasingly studied as scaffolds and supports for catalysis. The solid-state structures of MOFs, combined with their high porosity, suggest that MOFs may possess advantages shared by both heterogeneous and homogeneous catalysts, with few of the shortcomings of either. Herein, efforts to create single-site catalytic metal centers appended to the organic ligand struts of MOFs will be discussed. Reactions important for advanced energy applications, such as H2 production and CO2 reduction, will be highlighted. Examining how these active sites can be introduced, their performance, and their existing limitations should provide direction for design of the next generation of MOF-based catalysts for energy-relevant, small-molecule transformations. Finally, the introduction of second-sphere interactions (e.g., hydrogen bonding via squaramide groups) as a possible route to enhancing the activity of these metal centers is reported.
Co-reporter:Teng-Hao Chen, Andreas Schneemann, Roland A. Fischer and Seth M. Cohen  
Dalton Transactions 2016 vol. 45(Issue 7) pp:3063-3069
Publication Date(Web):04 Jan 2016
DOI:10.1039/C5DT04316F
A series of unprecedented crown ether- and thiacrown ether-derivatized benzene dicarboxylic acid (H2bdc) ligands has been synthesized and incorporated into the prototypical isoreticular metal–organic framework (IRMOF) and UiO-66 materials. In the case of UiO-66, only MOFs comprised from a mixed-ligand composition, requiring both unsubstituted bdc and crown ether containing ligands, could be prepared. These are among the few ligand derivatives, and resulting MOFs, that incorporate a macrocyclic group directly on the bdc ligand, providing a new, modular platform for exploring new supramolecular and coordination chemistry within MOFs.
Co-reporter:Honghan Fei
Journal of the American Chemical Society 2015 Volume 137(Issue 6) pp:2191-2194
Publication Date(Web):February 1, 2015
DOI:10.1021/ja5126885
The incorporation of 2,3-dimercaptoterephthalate (thiocatecholate, tcat) into a highly robust UiO-type metal–organic framework (MOF) has been achieved via postsynthetic exchange (PSE). The anionic, electron-donating thiocatecholato motif provides an excellent platform to obtain site-isolated and coordinatively unsaturated soft metal sites in a robust MOF architecture. Metalation of the thiocatechol group with palladium affords unprecedented Pd-mono(thiocatecholato) moieties within these MOFs. Importantly, Pd-metalated MOFs are efficient, heterogeneous, and recyclable catalysts for regioselective functionalization of sp2 C–H bond. This material is a rare example of chelation-assisted C–H functionalization performed by a MOF catalyst.
Co-reporter:Zhenjie Zhang; Ha Thi Hoang Nguyen; Stephen A. Miller; Ann M. Ploskonka; Jared B. DeCoste
Journal of the American Chemical Society 2015 Volume 138(Issue 3) pp:920-925
Publication Date(Web):December 28, 2015
DOI:10.1021/jacs.5b11034
Recently, polymer–metal–organic frameworks (polyMOFs) were reported as a new class of hybrid porous materials that combine advantages of both organic polymers and crystalline MOFs. Herein, we report a bridging coligand strategy to prepare new types of polyMOFs, demonstrating that polyMOFs are compatible with additional MOF architectures besides that of the earlier reported IRMOF-1 type polyMOF. Gas sorption studies revealed that these polyMOF materials exhibited relatively high CO2 sorption but very low N2 sorption, making them promising materials for CO2/N2 separations. Moreover, these polyMOFs demonstrated exceptional water stability attributed to the hydrophobicity of polymer ligands as well as the cross-linking of the polymer chains within the MOF.
Co-reporter:Yeob Lee, Sangjun Kim, Jeung Ku Kang and Seth M. Cohen  
Chemical Communications 2015 vol. 51(Issue 26) pp:5735-5738
Publication Date(Web):18 Feb 2015
DOI:10.1039/C5CC00686D
Postsynthetic exchange (PSE) of Ti(IV) into a Zr(IV)-based MOF enabled photocatalytic CO2 reduction to HCOOH under visible light irradiation with the aid of BNAH and TEOA. Use of a mixed-ligand strategy enhanced the photocatalytic activity of the MOF by introducing new energy levels in the band structure of the MOF.
Co-reporter:Christian Perez, Jean-Philippe Monserrat, Yao Chen and Seth M. Cohen  
Chemical Communications 2015 vol. 51(Issue 33) pp:7116-7119
Publication Date(Web):20 Mar 2015
DOI:10.1039/C4CC09921D
A novel approach for developing prodrugs based on masked carboxylic acids is described. Rather than using conventional esterase-based activation, thiazolidinone protecting groups have been identified that can reveal carboxylic acid groups upon activation by hydrogen peroxide. This may prove valuable in the continuing development of prodrug strategies that rely on reactive oxygen species (ROS) as a trigger.
Co-reporter:Yeob Lee, Sangjun Kim, Honghan Fei, Jeung Ku Kang and Seth M. Cohen  
Chemical Communications 2015 vol. 51(Issue 92) pp:16549-16552
Publication Date(Web):24 Sep 2015
DOI:10.1039/C5CC04506A
Metal–organic frameworks (MOFs) with isolated metal-monocatecholato groups have been synthesized via postsynthetic exchange (PSE) for CO2 reduction photocatalyst under visible light irradiation in the presence of 1-benzyl-1,4-dihydronicotinamide and triethanolamine. The Cr-monocatecholato species are more efficient than the Ga-monocatecholato species.
Co-reporter:Xiao Yu and Seth M. Cohen  
Chemical Communications 2015 vol. 51(Issue 48) pp:9880-9883
Publication Date(Web):15 May 2015
DOI:10.1039/C5CC01697E
A photocatalytic Ru complex was incorporated into a Zr(IV)-based metal–organic framework (MOF) via postsynthetic methods. The resulting UiO-67-Ru(bpy)3 shows efficient and recyclable catalytic activity for the aerobic oxidation of arylboronic acids under near-UV and visible light irradiation.
Co-reporter:Honghan Fei, Sonja Pullen, Andreas Wagner, Sascha Ott and Seth M. Cohen  
Chemical Communications 2015 vol. 51(Issue 1) pp:66-69
Publication Date(Web):23 Oct 2014
DOI:10.1039/C4CC08218D
A facile and efficient fabrication approach for homogeneous, crack-free UiO-66 films with exceptionally high crystallinity and tunable thickness on a transparent and conductive glass substrate is reported. Two functionalized species, a catechol ligand and a Fe2 complex with structural resemblance to the active site of [FeFe] hydrogenase, were introduced into the MOF films via a postsynthetic exchange. Voltammetric studies show the [FeFe] complex in the thinner UiO-66 films (2–5 μm) can be reduced electrochemically.
Co-reporter:Kevin B. Daniel; Eric D. Sullivan; Yao Chen; Joshua C. Chan; Patricia A. Jennings; Carol A. Fierke
Journal of Medicinal Chemistry 2015 Volume 58(Issue 11) pp:4812-4821
Publication Date(Web):May 14, 2015
DOI:10.1021/acs.jmedchem.5b00539
Histone deacetylase inhibitors (HDACi) target abnormal epigenetic states associated with a variety of pathologies, including cancer. Here, the development of a prodrug of the canonical broad-spectrum HDACi suberoylanilide hydroxamic acid (SAHA) is described. Although hydroxamic acids are utilized universally in the development of metalloenzyme inhibitors, they are considered to be poor pharmacophores with reduced activity in vivo. We developed a prodrug of SAHA by appending a promoiety, sensitive to thiols, to the hydroxamic acid warhead (termed SAHA-TAP). After incubation of SAHA-TAP with an HDAC, the thiol of a conserved HDAC cysteine residue becomes covalently tagged with the promoiety, initiating a cascade reaction that leads to the release of SAHA. Mass spectrometry and enzyme kinetics experiments validate that the cysteine residue is covalently appended with the TAP promoiety. SAHA-TAP demonstrates cytotoxicity activity against various cancer cell lines. This strategy represents an original prodrug design with a dual mode of action for HDAC inhibition.
Co-reporter:Phuong V. Dau
Inorganic Chemistry 2015 Volume 54(Issue 7) pp:3134-3138
Publication Date(Web):March 18, 2015
DOI:10.1021/ic502316v
Herein, we present the synthesis of a metal–organic framework-based tandem catalyst that contains two distinct catalytic domains. Zn(II)-based IRMOF-9-Irdcppy-NH2 (IRMOF = isoreticular metal–organic framework) has both organocatalytic amine and organometallic Ir(I) groups that were incorporated by both pre- and postsynthetic functionalization methods. The isolated amine and Ir(I) sites of IRMOF-9-Irdcppy-NH2 are shown to be independently catalytically active for performing a Knoevenagel condensation and allylic N-alkylation, respectively. More importantly, IRMOF-9-Irdcppy-NH2 can act as a tandem catalyst for both of these organic transformations in a one-pot reaction, which cannot be achieved efficiently using the combined, homogeneous analogues.
Co-reporter:Michael S. Denny Jr. ;Dr. Seth M. Cohen
Angewandte Chemie International Edition 2015 Volume 54( Issue 31) pp:9029-9032
Publication Date(Web):
DOI:10.1002/anie.201504077

Abstract

Processable films of metal–organic frameworks (MOFs) have been long sought to advance the application of MOFs in various technologies from separations to catalysis. Herein, MOF–polymer mixed-matrix membranes (MMMs) are described, formed on several substrates using a wide variety of MOF materials. These MMMs can be delaminated from their substrates to create free-standing MMMs that are mechanically stable and pliable. The MOFs in these MMMs remain highly crystalline, porous, and accessible for further chemical modification through postsynthetic modification (PSM) and postsynthetic exchange (PSE) processes. Overall, the findings here demonstrate a versatile approach to preparing stable functional MMMs that should contribute significantly to the advancement of these materials.

Co-reporter:Dr. Zhenjie Zhang;Ha Thi Hoang Nguyen;Dr. Stephen A. Miller;Dr. Seth M. Cohen
Angewandte Chemie International Edition 2015 Volume 54( Issue 21) pp:
Publication Date(Web):
DOI:10.1002/anie.201582161
Co-reporter:Dr. Yao Chen ;Dr. Seth M. Cohen
ChemMedChem 2015 Volume 10( Issue 10) pp:1733-1738
Publication Date(Web):
DOI:10.1002/cmdc.201500293

Abstract

Metalloprotein inhibitors (MPi) are an important class of therapeutics for the treatment of a variety of diseases, including hypertension, cancer, and HIV/AIDS. However, despite their clinical success, there is an apprehension that MPi may be less selective than other small-molecule therapeutics and more prone to inhibit off-target metalloenzymes. We examined the issue of MPi specificity by investigating the selectivity of a variety of MPi against a representative panel of metalloenzymes in the presence of competing metalloproteins (metallothionein, myoglobin, carbonic anhydrase, and transferrin). Our findings reveal that a wide variety of MPi do not exhibit a decrease in inhibitory activity in the presence of large excesses of competing metalloproteins, suggesting that the competing proteins do not titrate the MPi away from its intended target. This study represents a rudimentary but important means to mimic the biological milieu, which contains other metalloproteins that could compete the MPi away from its target. The strategy used in this study may be a useful approach to examine the selectivity of other MPi in development.

Co-reporter:Dr. Zhenjie Zhang;Ha Thi Hoang Nguyen;Dr. Stephen A. Miller;Dr. Seth M. Cohen
Angewandte Chemie International Edition 2015 Volume 54( Issue 21) pp:6152-6157
Publication Date(Web):
DOI:10.1002/anie.201502733

Abstract

Preparation of porous materials from one-dimensional polymers is challenging because the packing of polymer chains results in a dense, non-porous arrangement. Herein, we demonstrate the remarkable adaptation of an amorphous, linear, non-porous, flexible organic polymer into a three-dimensional, highly porous, crystalline solid, as the organic component of a metal–organic framework (MOF). A polymer with aromatic dicarboxylic acids in the backbone functioned as a polymer ligand upon annealing with ZnII, generating a polymer–metal–organic framework (polyMOF). These materials break the dogma that MOFs must be prepared from small, rigid ligands. Similarly, polyMOFs contradict conventional polymer chemistry by demonstrating that linear and amorphous polymers can be readily coaxed into a highly crystalline, porous, three-dimensional structure by coordination chemistry.

Co-reporter:Dr. Zhenjie Zhang;Ha Thi Hoang Nguyen;Dr. Stephen A. Miller;Dr. Seth M. Cohen
Angewandte Chemie 2015 Volume 127( Issue 21) pp:
Publication Date(Web):
DOI:10.1002/ange.201582161
Co-reporter:Dr. Zhenjie Zhang;Ha Thi Hoang Nguyen;Dr. Stephen A. Miller;Dr. Seth M. Cohen
Angewandte Chemie 2015 Volume 127( Issue 21) pp:6250-6255
Publication Date(Web):
DOI:10.1002/ange.201502733

Abstract

Preparation of porous materials from one-dimensional polymers is challenging because the packing of polymer chains results in a dense, non-porous arrangement. Herein, we demonstrate the remarkable adaptation of an amorphous, linear, non-porous, flexible organic polymer into a three-dimensional, highly porous, crystalline solid, as the organic component of a metal–organic framework (MOF). A polymer with aromatic dicarboxylic acids in the backbone functioned as a polymer ligand upon annealing with ZnII, generating a polymer–metal–organic framework (polyMOF). These materials break the dogma that MOFs must be prepared from small, rigid ligands. Similarly, polyMOFs contradict conventional polymer chemistry by demonstrating that linear and amorphous polymers can be readily coaxed into a highly crystalline, porous, three-dimensional structure by coordination chemistry.

Co-reporter:Michael S. Denny Jr. ;Dr. Seth M. Cohen
Angewandte Chemie 2015 Volume 127( Issue 31) pp:9157-9160
Publication Date(Web):
DOI:10.1002/ange.201504077

Abstract

Processable films of metal–organic frameworks (MOFs) have been long sought to advance the application of MOFs in various technologies from separations to catalysis. Herein, MOF–polymer mixed-matrix membranes (MMMs) are described, formed on several substrates using a wide variety of MOF materials. These MMMs can be delaminated from their substrates to create free-standing MMMs that are mechanically stable and pliable. The MOFs in these MMMs remain highly crystalline, porous, and accessible for further chemical modification through postsynthetic modification (PSM) and postsynthetic exchange (PSE) processes. Overall, the findings here demonstrate a versatile approach to preparing stable functional MMMs that should contribute significantly to the advancement of these materials.

Co-reporter:David P. Martin ; Patrick G. Blachly ; Amy R. Marts ; Tessa M. Woodruff ; César A. F. de Oliveira ; J. Andrew McCammon ; David L. Tierney
Journal of the American Chemical Society 2014 Volume 136(Issue 14) pp:5400-5406
Publication Date(Web):March 17, 2014
DOI:10.1021/ja500616m
The binding of three closely related chelators: 5-hydroxy-2-methyl-4H-pyran-4-thione (allothiomaltol, ATM), 3-hydroxy-2-methyl-4H-pyran-4-thione (thiomaltol, TM), and 3-hydroxy-4H-pyran-4-thione (thiopyromeconic acid, TPMA) to the active site of human carbonic anhydrase II (hCAII) has been investigated. Two of these ligands display a monodentate mode of coordination to the active site Zn2+ ion in hCAII that is not recapitulated in model complexes of the enzyme active site. This unprecedented binding mode in the hCAII-thiomaltol complex has been characterized by both X-ray crystallography and X-ray spectroscopy. In addition, the steric restrictions of the active site force the ligands into a ‘flattened’ mode of coordination compared with inorganic model complexes. This change in geometry has been shown by density functional computations to significantly decrease the strength of the metal–ligand binding. Collectively, these data demonstrate that the mode of binding by small metal-binding groups can be significantly influenced by the protein active site. Diminishing the strength of the metal–ligand bond results in unconventional modes of metal coordination not found in typical coordination compounds or even carefully engineered active site models, and understanding these effects is critical to the rational design of inhibitors that target clinically relevant metalloproteins.
Co-reporter:Honghan Fei ; JaeWook Shin ; Ying Shirley Meng ; Mario Adelhardt ; Jörg Sutter ; Karsten Meyer
Journal of the American Chemical Society 2014 Volume 136(Issue 13) pp:4965-4973
Publication Date(Web):March 5, 2014
DOI:10.1021/ja411627z
An isolated metal-monocatecholato moiety has been achieved in a highly robust metal–organic framework (MOF) by two fundamentally different postsynthetic strategies: postsynthetic deprotection (PSD) and postsynthetic exchange (PSE). Compared with PSD, PSE proved to be a more facile and efficient functionalization approach to access MOFs that could not be directly synthesized under solvothermal conditions. Metalation of the catechol functionality residing in the MOFs resulted in unprecedented Fe-monocatecholato and Cr-monocatecholato species, which were characterized by X-ray absorption spectroscopy, X-band electron paramagnetic resonance spectroscopy, and 57Fe Mössbauer spectroscopy. The resulting materials are among the first examples of Zr(IV)-based UiO MOFs (UiO = University of Oslo) with coordinatively unsaturated active metal centers. Importantly, the Cr-metalated MOFs are active and efficient catalysts for the oxidation of alcohols to ketones using a wide range of substrates. Catalysis could be achieved with very low metal loadings (0.5–1 mol %). Unlike zeolite-supported, Cr-exchange oxidation catalysts, the MOF-based catalysts reported here are completely recyclable and reusable, which may make them attractive catalysts for ‘green’ chemistry processes.
Co-reporter:Honghan Fei and Seth M. Cohen  
Chemical Communications 2014 vol. 50(Issue 37) pp:4810-4812
Publication Date(Web):21 Mar 2014
DOI:10.1039/C4CC01607F
We report two synthetic approaches to prepare a highly crystalline Zr(IV)-based metal–organic framework (MOF) containing open 2,2′-bipyridine (bpy) chelating sites. The resulting UiO-67-bpydc readily forms complexes with PdCl2 to produce a MOF that exhibits efficient and recyclable catalytic activity for the Suzuki–Miyaura cross-coupling reaction.
Co-reporter:Marco Taddei, Ferdinando Costantino, Riccardo Vivani, Stefano Sabatini, Sang-Ho Lim and Seth M. Cohen  
Chemical Communications 2014 vol. 50(Issue 43) pp:5737-5740
Publication Date(Web):03 Apr 2014
DOI:10.1039/C4CC01253D
1,3,5-Tris(4-phosphonophenyl)benzene was synthesized via a microwave heating assisted route and was subsequently used for the preparation of a new zirconium phosphonate with honeycomb-like structure displaying remarkable thermal stability and hydrolysis resistance.
Co-reporter:Phuong V. Dau and Seth M. Cohen  
Chemical Communications 2014 vol. 50(Issue 81) pp:12154-12157
Publication Date(Web):20 Aug 2014
DOI:10.1039/C4CC05265J
Herein, we present the use of presynthetic and postsynthetic modification (PSM) approaches to regulate the structural organization of functional groups in the pores of isoreticular metal–organic frameworks (IRMOFs). It has been found that the structural ordering of aryl groups within the IRMOF pores results in hysteretic H2 sorption, while the same aryl groups introduced in a disordered manner displays reversible H2 sorption that is more typical of the IRMOF family.
Co-reporter:David P. Martin ; Patrick G. Blachly ; J. Andrew McCammon
Journal of Medicinal Chemistry 2014 Volume 57(Issue 16) pp:7126-7135
Publication Date(Web):August 12, 2014
DOI:10.1021/jm500984b
The binding of a series of metal-binding pharmacophores (MBPs) related to the ligand 1-hydroxypyridine-2-(1H)-thione (1,2-HOPTO) in the active site of human carbonic anhydrase II (hCAII) has been investigated. The presence and/or position of a single methyl substituent drastically alters inhibitor potency and can result in coordination modes not observed in small-molecule model complexes. It is shown that this unexpected binding mode is the result of a steric clash between the methyl group and a highly ordered water network in the active site that is further stabilized by the formation of a hydrogen bond and favorable hydrophobic contacts. The affinity of MBPs is dependent on a large number of factors including donor atom identity, orientation, electrostatics, and van der Waals interactions. These results suggest that metal coordination by metalloenzyme inhibitors is a malleable interaction and that it is thus more appropriate to consider the metal-binding motif of these inhibitors as a pharmacophore rather than a “chelator”. The rational design of inhibitors targeting metalloenzymes will benefit greatly from a deeper understanding of the interplay between the variety of forces governing the binding of MBPs to active site metal ions.
Co-reporter:C. A. Allen and S. M. Cohen
Inorganic Chemistry 2014 Volume 53(Issue 13) pp:7014-7019
Publication Date(Web):June 19, 2014
DOI:10.1021/ic500951b
A series of geometrically constrained, cross-linked benzene dicarboxylic acid (bdc) derivatives have been synthesized and incorporated into the canonical isoreticular metal–organic framework (IRMOF) lattice. Only certain cross-links, which allow for the proper relative orientation of the bdc subunits, form the desired IRMOF. Design criteria from these cross-linked ligands allowed for the rational design of two oligomeric ligands composed of three bdc monomers tethered together. These oligomeric ligands were also readily incorporated into an IRMOF lattice with a high degree of crystallinity and porosity, providing a new dimension to rational ligand design for metal–organic frameworks.
Co-reporter:Sonja Pullen;Michael D. Fayer;Amr Tamimi;Jun Nishida;Honghan Fei;Sascha Ott
PNAS 2014 Volume 111 (Issue 52 ) pp:18442-18447
Publication Date(Web):2014-12-30
DOI:10.1073/pnas.1422194112
The structural elasticity of metal–organic frameworks (MOFs) is a key property for their functionality. Here, we show that 2D IR spectroscopy with pulse-shaping techniques can probe the ultrafast structural fluctuations of MOFs. 2D IR data, obtained from a vibrational probe attached to the linkers of UiO-66 MOF in low concentration, revealed that the structural fluctuations have time constants of 7 and 670 ps with no solvent. Filling the MOF pores with dimethylformamide (DMF) slows the structural fluctuations by reducing the ability of the MOF to undergo deformations, and the dynamics of the DMF molecules are also greatly restricted. Methodology advances were required to remove the severe light scattering caused by the macroscopic-sized MOF particles, eliminate interfering oscillatory components from the 2D IR data, and address Förster vibrational excitation transfer.
Co-reporter: Seth M. Cohen
ChemMedChem 2014 Volume 9( Issue 6) pp:1087-1089
Publication Date(Web):
DOI:10.1002/cmdc.201402148

No abstract is available for this article.

Co-reporter:Sonja Pullen ; Honghan Fei ; Andreas Orthaber ; Seth M. Cohen ;Sascha Ott
Journal of the American Chemical Society 2013 Volume 135(Issue 45) pp:16997-17003
Publication Date(Web):October 11, 2013
DOI:10.1021/ja407176p
A molecular proton reduction catalyst [FeFe](dcbdt)(CO)6 (1, dcbdt = 1,4-dicarboxylbenzene-2,3-dithiolate) with structural similarities to [FeFe]-hydrogenase active sites has been incorporated into a highly robust Zr(IV)-based metal–organic framework (MOF) by postsynthetic exchange (PSE). The PSE protocol is crucial as direct solvothermal synthesis fails to produce the functionalized MOF. The molecular integrity of the organometallic site within the MOF is demonstrated by a variety of techniques, including X-ray absorption spectroscopy. In conjunction with [Ru(bpy)3]2+ as a photosensitizer and ascorbate as an electron donor, MOF-[FeFe](dcbdt)(CO)6 catalyzes photochemical hydrogen evolution in water at pH 5. The immobilized catalyst shows substantially improved initial rates and overall hydrogen production when compared to a reference system of complex 1 in solution. Improved catalytic performance is ascribed to structural stabilization of the complex when incorporated in the MOF as well as the protection of reduced catalysts 1– and 12– from undesirable charge recombination with oxidized ascorbate.
Co-reporter:Phuong V. Dau, Min Kim and Seth M. Cohen  
Chemical Science 2013 vol. 4(Issue 2) pp:601-605
Publication Date(Web):03 Oct 2012
DOI:10.1039/C2SC21289G
Although porous materials, including metal–organic frameworks (MOFs), can be functionalized using heterogeneous reactions (solution–solid, gas–solid), there are no reports that modify chemically identical sites in a spatially selective, periodic fashion. Herein, the cyclometalation of two non-interpenetrated MOFs and an interpenetrated MOF in the solid state is reported using [Ir(COD)(OCH3)]2 and [Rh(COD)(Cl)]2 (COD = 1,5-cyclooctadiene). Incredibly, the cyclometalation of the interpenetrated MOF occurs only on ligands that lie along, one crystallographic axis, providing an unprecedented example of site-selective postsynthetic modification (PSM). This represents a degree of control on the functionalization of a porous, material that has not been otherwise realized, and is achieved in part because of the crystalline, periodic nature of MOFs. Furthermore, it was found that the degree of cyclometalation, increases the sorption capacity of the interpenetrated MOF.
Co-reporter:Jessica L. Fullagar, Amanda L. Garner, Anjali K. Struss, Joshua A. Day, David P. Martin, Jing Yu, Xiaoqing Cai, Kim D. Janda and Seth M. Cohen  
Chemical Communications 2013 vol. 49(Issue 31) pp:3197-3199
Publication Date(Web):06 Mar 2013
DOI:10.1039/C3CC41191E
Tropolone emerged from the screening of a chelator fragment library (CFL) as an inhibitor of the Zn2+-dependent virulence factor, Pseudomonas aeruginosa elastase (LasB). Based on this initial hit, a series of substituted tropolone-based LasB inhibitors was prepared, and a compound displaying potent activity in vitro and in a bacterial swarming assay was identified. Importantly, this inhibitor was found to be specific for LasB over other metalloenzymes, validating the usage of tropolone as a viable scaffold for identifying first-in-class LasB inhibitors.
Co-reporter:Corinne A. Allen, Jake A. Boissonnault, Jordi Cirera, Ryan Gulland, Francesco Paesani and Seth M. Cohen  
Chemical Communications 2013 vol. 49(Issue 31) pp:3200-3202
Publication Date(Web):06 Mar 2013
DOI:10.1039/C3CC40635K
Herein we report the synthesis of canonical isoreticular metal–organic frameworks (IRMOFs) containing interligand crosslinks. Chemically crosslinking two molecules of 2-amino-1,4-benzene dicarboxylic acid (NH2-BDC) gives ligands that readily form IRMOF-1 analogs, producing crosslinked MOFs that may be designed to have novel properties.
Co-reporter:Phuong V. Dau and Seth M. Cohen  
Chemical Communications 2013 vol. 49(Issue 55) pp:6128-6130
Publication Date(Web):29 May 2013
DOI:10.1039/C3CC42119H
Metal–organic frameworks (MOFs) functionalized via Ir(I) cyclometalation are shown to be effective as heterogeneous catalysts for the allylic N-alkylation of various amines. The MOF catalysts are one of the first and most effective MOF-based heterogeneous organometallic catalysts for the direct formation of C–N bonds. In addition, these MOFs represent a rare, stable and reusable, class of reactive Ir catalysts.
Co-reporter:Joshua A. Day
Journal of Medicinal Chemistry 2013 Volume 56(Issue 20) pp:7997-8007
Publication Date(Web):September 27, 2013
DOI:10.1021/jm401053m
The inhibitory activity of a broad group of known metalloenzyme inhibitors against a panel of metalloenzymes was evaluated. Clinically approved inhibitors were selected as well as several other reported metalloprotein inhibitors in order to represent a broad range of metal binding groups (MBGs), including hydroxamic acid, carboxylate, hydroxypyridinonate, thiol, and N-hydroxyurea functional groups. A panel of metalloenzymes, including carbonic anhydrase (hCAII), several matrix metalloproteinases (MMPs), angiotensin converting enzyme (ACE), histone deacetylase (HDAC-2), and tyrosinase (TY), was selected based on their clinical importance for a range of pathologies. In addition, each inhibitor was evaluated for its ability to remove Fe3+ from holo-transferrin to gauge the ability of the inhibitors to access Fe3+ from a primary transport protein. The results show that the metalloenzyme inhibitors are quite selective for their intended targets, suggesting that despite their ability to bind metal ions, metalloprotein inhibitors are not prone to widespread off-target enzyme inhibition activity.
Co-reporter:Sang Ho Lim and Seth M. Cohen
Inorganic Chemistry 2013 Volume 52(Issue 14) pp:7862-7872
Publication Date(Web):June 25, 2013
DOI:10.1021/ic302840x
An array of coordination-driven supramolecular metal–ligand clusters has been synthesized using polytopic phosphine ligands and coinage metals (Cu+, Ag+, Au+). Rigid 3-fold or 2-fold symmetric phosphine ligands have been prepared: 1,3,5-tris((4-(diphenylphosphino)ethynyl)phenyl)benzene) (tppepb, L1), 1,4-bis((diphenylphosphino)ethynyl)benzene (1,4-dppeb, L2), 1,3-bis((diphenylphosphino)ethynyl)benzene (1,3-dppeb, L3), 2,6-bis((diphenylphosphino)ethynyl)pyridine (2,6-dppep, L4), and 1,5-bis((diphenylphosphino)ethynyl)naphthalene (1,5-dppen, L5). Self-assembly of these ligands with coinage metals produces four different types of metal–ligand clusters, or in some cases coordination polymers, depending on number and relative geometry of the phosphine donor atoms. Supramolecular tetrahedral clusters of the formula M4(L1)4I4 (M = Cu+, Ag+, Au+) were obtained with the tppepb ligand, encapsulating solvent molecules (either CH2Cl2 or DMF) as guests within the central cavity of the clusters. The ligands 1,3-dppeb (L3) and 2,6-dppep (L4) give achiral, triple-stranded, dinuclear mesocates with the formula M2(L)3I2 (M = Cu+ or Au+). In contrast, the ligand 1,4-dppeb (L2) generates a triple-stranded, dinuclear helicate with Cu+, but a coordination polymer with Au+ (both with the empirical formula M2(L2)3I2). Finally, coordination polymers were obtained from 1,5-dppen (L5) with Cu+. The clusters have been fully characterized by single crystal X-ray crystallography, high-resolution mass spectrometry, 1H NMR, and 31P NMR.
Co-reporter:David P. Martin ; Zachary S. Hann
Inorganic Chemistry 2013 Volume 52(Issue 21) pp:12207-12215
Publication Date(Web):May 24, 2013
DOI:10.1021/ic400295f
An ever-increasing number of metalloproteins are being discovered that play essential roles in physiological processes. Inhibitors of these proteins have significant potential for the treatment of human disease, but clinical success of these compounds has been limited. Herein, zinc(II)-dependent metalloprotein inhibitors in clinical use are reviewed, and the potential for using novel metal-binding groups (MBGs) in the design of these inhibitors is discussed. By using human carbonic anhydrase II as a model system, the nuances of MBG–metal interactions in the context of a protein environment can be probed. Understanding how metal coordination influences inhibitor binding may help in the design of new therapeutics targeting metalloproteins.
Co-reporter:Honghan Fei, John F. Cahill, Kimberly A. Prather, and Seth M. Cohen
Inorganic Chemistry 2013 Volume 52(Issue 7) pp:4011-4016
Publication Date(Web):March 21, 2013
DOI:10.1021/ic400048g
Herein, we report a general postsynthetic exchange (PSE) approach to introduce a redox-active transition metal, specifically Mn(II), into “inert” zeolitic imidazolate frameworks (ZIFs), a subclass of metal–organic frameworks (MOFs). It is shown that metal ion PSE occurs in ZIF-71 (RHO topology) and ZIF-8 (SOD topology) under ambient conditions. The metal exchanged ZIFs are the first porous, Mn(II)-based ZIFs and a rare example of ZIFs with two transition metal centers in a single lattice. Exchanged materials are characterized by scanning electron microscopy-energy dispersed X-ray spectroscopy (SEM-EDX), aerosol time-of-flight mass spectrometry (ATOFMS), X-ray fluorescence spectroscopy (XRF), and Brunauer–Emmett–Teller (BET) surface area analysis. In addition, stepwise “tandem” PSE strategies are described to exchange of metal ions and organic linkers consecutively in ZIFs. These findings are important for probing the chemical dynamics of ZIFs, despite their high crystallinity and robustness, and inspire the more widespread use of PSE to prepare multimetallic and multifunctional MOFs.
Co-reporter:Phuong V. Dau and Seth M. Cohen  
CrystEngComm 2013 vol. 15(Issue 45) pp:9304-9307
Publication Date(Web):08 Jul 2013
DOI:10.1039/C3CE41124A
The synthesis of three nitro-functionalized Zn(II)-paddlewheel based metal–organic frameworks (MOFs) and a Zn(II)-based 2D coordination polymer are reported. While 2-nitro-[1,1′-biphenyl]-4,4′-dicarboxylic acid (bpdc-NO2) is readily incorporated into structure of extended DMOF (DMOF = 1,4-diazabicyclo[2.2.2]octane MOF) and BMOF (BMOF = 4,4′-bipyridine MOF), 2,2′-dinitro-[1,1′-biphenyl]-4,4′-dicarboxylic acid (bpdc-[NO2]2) is only incorporated into the structure of BMOF. Furthermore, it is proposed that intermolecular interactions between the nitro groups influence the topology of these frameworks producing unexpected interpenetration in BMOF-1-bpdc-[NO2]2. Gas sorption studies of these functionalized frameworks also reveal effects of the nitro groups on topology as manifest in their gas sorption behaviour.
Co-reporter:Phuong V. Dau, Luis R. Polanco and Seth M. Cohen  
Dalton Transactions 2013 vol. 42(Issue 11) pp:4013-4018
Publication Date(Web):08 Jan 2013
DOI:10.1039/C3DT32588A
The synthesis and physical properties of dioxole functionalized metal–organic frameworks (MOFs) are reported. Combination of benzo[d][1,3]dioxole-4,7-dicarboxylic acid (dioxole-BDC) and Zn(II) under solvothermal conditions yields either an isoreticular metal–organic framework analog (IRMOF-1-dioxole) or a new MOF material (MOF-1-dioxole). With the addition of a co-ligand, namely 4,4′-bipyridine, a mixed-linker Zn(II)-paddlewheel MOF (BMOF-2-dioxole) is obtained. The structure of all three MOFs has been determined by single-crystal X-ray diffraction studies. MOF-1-dioxole reveals that the dioxole group binds to the Zn(II) ions, while there is no such binding in IRMOF-1-dioxole or BMOF-2-dioxole, hence preserving the parent topology of these frameworks. Thermal gravimetric analysis and gas sorption studies reveal quite different physical properties for each of these functionalized MOFs.
Co-reporter:Kevin B. Daniel;Arpita Agrawal; Dr. Marianne Manchester; Dr. Seth M. Cohen
ChemBioChem 2013 Volume 14( Issue 5) pp:593-598
Publication Date(Web):
DOI:10.1002/cbic.201200724

Abstract

Hydrogen peroxide is a major component of oxygen metabolism in biological systems that, when present in high concentrations, can lead to oxidative stress in cells. Noninvasive molecular imaging of H2O2 using fluorogenic systems represents an effective way to detect and measure the accumulation of this metabolite. Herein, we detail the development of robust H2O2-sensitive fluorescent probes using a boronic ester trigger appended to the fluorophore through a benzyl ether linkage. A major advantage of the probes presented here is their synthetic accessibility, with only one step needed to generate the probes on the gram scale. The sensitivity of the probes was evaluated in simulated physiological conditions, showing micromolar sensitivity to H2O2. The probes were tested in biological model systems, demonstrating effective imaging of unstimulated, endogenous H2O2 levels in RAW 264.7 cells and murine brain tissue.

Co-reporter:Christian Perez;Kevin B. Daniel ; Seth M. Cohen
ChemMedChem 2013 Volume 8( Issue 10) pp:1662-1667
Publication Date(Web):
DOI:10.1002/cmdc.201300255

Abstract

Prodrugs are effective tools in overcoming drawbacks typically associated with drug formulation and delivery. Those employing esterase-triggered functional groups are frequently utilized to mask polar carboxylic acids and phenols, increasing drug-like properties such as lipophilicity. Herein we detail a comprehensive assessment for strategies that effectively release hydroxy and phenolic moieties in the presence of an esterase. Matrix metalloproteinases (MMPs) serve as our proof-of-concept target. Three distinct ester-responsive protecting groups are incorporated into MMP proinhibitors containing hydroxy moieties. Analytical evaluation of the proinhibitors demonstrates that the use of a benzyl ether group appended to the esterase trigger leads to considerably faster kinetics of conversion and enhanced aqueous stability when compared with more conventional approaches where the trigger is directly attached to the inhibitor. Biological assays confirm that all protecting groups effectively cleave in the presence of esterase to generate the active inhibitor. The superior reaction-based prodrug strategies presented here should serve as a platform for esterase-responsive prodrug design in the future.

Co-reporter:Seth M. Cohen
Chemical Reviews 2012 Volume 112(Issue 2) pp:970
Publication Date(Web):September 14, 2011
DOI:10.1021/cr200179u
Co-reporter:Min Kim ; John F. Cahill ; Honghan Fei ; Kimberley A. Prather
Journal of the American Chemical Society 2012 Volume 134(Issue 43) pp:18082-18088
Publication Date(Web):October 8, 2012
DOI:10.1021/ja3079219
Postsynthetic ligand and metal ion exchange (PSE) processes are shown to readily occur in several “inert” metal–organic frameworks (MOFs), including zeolitic imidazolate frameworks (ZIFs). Ligand exchange can occur between solid samples, as was demonstrated under relatively mild conditions with two robust, topologically distinct MOFs, MIL-53(Al) and MIL-68(In). Interestingly, ligand PSE is not observed with MIL-101(Cr), which is attributed to the kinetic inertness of the Cr(III) ion. In addition to ligand exchange, metal ion (cation) PSE was also studied between intact MOF microcrystalline particles. Metal ion transfer between MIL-53(Al) and MIL-53(Fe) was readily observed. These PSE reactions were monitored and the products characterized by a number of techniques, including aerosol time-of-flight mass spectrometry, which permits single-particle compositional analysis. To show the potential synthetic utility of this approach, the PSE process was used to prepare the first Ti(IV) analogue of the robust UiO-66(Zr) framework. Finally, experiments to rule out mechanisms other than PSE (i.e., aggregation, dissolution/recrystallization) were performed. The results demonstrate that PSE, of either ligands or cations, is common even with highly robust MOFs such as UiO-66(Zr), MILs, and ZIFs. Furthermore, it is shown that PSE is useful in preparing novel materials that cannot be obtained via other synthetic methods.
Co-reporter:Min Kim, John F. Cahill, Yongxuan Su, Kimberly A. Prather and Seth M. Cohen  
Chemical Science 2012 vol. 3(Issue 1) pp:126-130
Publication Date(Web):13 Sep 2011
DOI:10.1039/C1SC00394A
Herein, we report that the exchange of ligands from an intact metal–organic framework (MOF) can be exploited as a means to introduce functionalized ligands into MOFs under mild conditions. It is shown that ligand exchange can occur with ‘inert’ Zr(IV)-based UiO-66 MOFs in a solvent dependent manner. We call this process postsynthetic exchange (PSE) and show that it provides access to MOFs that are not readily prepared in high quality by solvothermal methods. It was found that ligand exchange can occur between UiO-66 MOFs as monitored by aerosol time-of-flight mass spectrometry (ATOFMS). ATOFMS was used to analyze the chemical composition of microcrystalline MOFs on the single particle level, providing information not available through bulk analysis. PSE is an important postsynthetic approach to the modification of MOFs, and the ligand exchange revealed by ATOFMS requires a re-evaluation of the assumed ‘stability’ of even the most robust MOFs.
Co-reporter:Corinne A. Allen and Seth M. Cohen  
Journal of Materials Chemistry A 2012 vol. 22(Issue 20) pp:10188-10194
Publication Date(Web):14 Dec 2011
DOI:10.1039/C2JM15183A
A series of isoreticular metal–organic frameworks (IRMOFs) have been prepared using two different ligands protected with photolabile groups: 2-((2-nitrobenzyl)oxy)terephthalic acid (L1) and 2-((4,5-dimethoxy-2-nitrobenzyl)oxy)terephthalic acid (L2). Irradiation at either 365 or 400 nm results in postsynthetic deprotection (PSD), removing the nitrobenzyl protecting groups from these ligands and generating phenolic groups in the pores of the MOF (55–83% yield). The photochemical behaviour of the ligands in the IRMOFs was not wholly predicted by their reactivity in solution (i.e. free ligand). A mixed ligand approach was used, by combining L1 or L2 with NH2-BDC to produce mixed ligand IRMOFs with 30–40% incorporation of the NH2-BDC. These mixed-ligand IRMOFs were then subjected to both postsynthetic modification (PSM) and PSD. Two routes to achieve both PSM and PSD were explored: PSM followed by PSD (route 1) and PSD followed by PSM (route 2). When using 365 nm light for the PSD reaction, route 1 was superior due to absorption of NH2-BDC at 365 nm. Irradiation at 400 nm gave fewer differences between route 1 and route 2, but the PSD reaction was less efficient (30–40%) for all systems. By combining PSD and PSM, MOFs with highly functionalized pores can be obtained through a combination of pre- and postsynthetic methods.
Co-reporter:Phuong V. Dau, Kristine K. Tanabe and Seth M. Cohen  
Chemical Communications 2012 vol. 48(Issue 75) pp:9370-9372
Publication Date(Web):08 Aug 2012
DOI:10.1039/C2CC34938H
Functionalization of the ligand 1,3,5-tris(4-carboxyphenyl)benzene (H3BTB) has been realized with methoxy (H3BTB–[OMe]3) and hydroxy (H3BTB–[OH]3) groups. Combining H3BTB–[OMe]3 and Zn(II) results in the formation of the first isostructural, functionalized analogue of MOF-177 (MOF-177–OMe), while the combination of H3BTB–[OH]3 and Zn(II) generates a rare, interpenetrated pcu-e framework.
Co-reporter:David P. Martin and Seth M. Cohen  
Chemical Communications 2012 vol. 48(Issue 43) pp:5259-5261
Publication Date(Web):11 Apr 2012
DOI:10.1039/C2CC32013D
A series of hydroxybenzoic acid derivatives have shown inhibitory activity against carbonic anhydrase (CA). X-ray crystallography shows that these molecules inhibit not by binding the active site metal ion but by strong hydrogen bonding to the metal-bound water nucleophile. The binding mode observed for these molecules is distinct when compared to other non-metal-binding CA inhibitors.
Co-reporter:Phuong V. Dau ; Min Kim ; Sergio J. Garibay ; Frédéric H. L. Münch ; Curtis E. Moore
Inorganic Chemistry 2012 Volume 51(Issue 10) pp:5671-5676
Publication Date(Web):April 30, 2012
DOI:10.1021/ic202683s
2-Phenylpyridine-5,4′-dicarboxylic acid (1, dcppy), a derivative of 4,4′-biphenyldicarboxylic (2, bpdc) was used as the organic linking component for several metal–organic frameworks (MOFs). The pyridine component of 1 does not interfere with the solvothermal synthetic procedure, and hence both 1 and 2 form similar isoreticular MOFs. Zr4+-based UiO-67-dcppy, Al3+-based DUT-5-dcppy, Zn2+-based DMOF-1-dcppy, and interpenetrated Zn2+-based BMOF-1-dcppy were readily synthesized from 1. Similarly, isostructural frameworks from 2 were prepared (UiO-67, DUT-5, DMOF-1-bpdc, and interpenetrated BMOF-1-bpdc). The structures and physical properties of these frameworks were characterized by powder X-ray diffraction (PXRD), single X-ray diffraction (XRD), thermogravimetric analysis (TGA), and gas sorption analysis. Generally, frameworks prepared from 1 or 2 displayed similar properties; however, gas sorption data showed that BMOF-1-dcppy displayed a very large hysteresis with N2 and CO2 suggestive of possible framework flexibility. In contrast, the analogous framework prepared from 2 (BMOF-1-bpdc) showed low uptake of N2 and CO2. The substantial difference in the gas sorption behavior of these MOFs is attributed to the pyridine nature of 1 that results in weakened π–π interactions between the interpenetrated nets.
Co-reporter:Min Kim and Seth M. Cohen  
CrystEngComm 2012 vol. 14(Issue 12) pp:4096-4104
Publication Date(Web):23 Dec 2011
DOI:10.1039/C2CE06491J
This highlight focuses on the discovery and functionalization of Zr(IV)-based metal–organic frameworks (MOFs). These relatively stable materials have been investigated for a variety of applications including catalysis, photochemical reactions, and molecular separations. The synthesis and modification of these frameworks are discussed along with their unique properties and potential technological utility.
Co-reporter:Min Kim, Jake A. Boissonnault, Corinne A. Allen, Phuong V. Dau and Seth M. Cohen  
Dalton Transactions 2012 vol. 41(Issue 20) pp:6277-6282
Publication Date(Web):11 Apr 2012
DOI:10.1039/C2DT30120B
A series of highly porous University of Michigan Crystalline Material (UMCM-1) type Zn-based metal–organic frameworks (MOFs) were synthesized from mono- and bi-functionalized benzenedicarboxylate (BDC) ligands. In total, 16 new functionalized UMCM-1 derivatives were obtained by a combination of pre- and postsynthetic functionalization. Through postsynthetic modification (PSM), amino–halo bifunctional MOFs were converted into amide–halo materials via solid-state acylation reactions. A series of bifunctional MOFs containing Cl, Br, and I groups revealed that PSM conversion is not affected by the size of the halide, only by the steric bulk of the reagent used in these solid-state organic transformations.
Co-reporter:Alisa Tanakit, Matthieu Rouffet, David P. Martin and Seth M. Cohen  
Dalton Transactions 2012 vol. 41(Issue 21) pp:6507-6515
Publication Date(Web):12 Mar 2012
DOI:10.1039/C2DT12373H
Matrix metalloproteinase inhibitors (MMPi) utilize zinc-binding groups (ZBGs) to chelate the catalytic Zn(II) ion resulting in enzyme inhibition. Adapting findings from the literature of Zn(II) ion sensors, we previously reported chelating sulfonamide inhibitors of MMP-2, some of which showed excellent selectivity over other gelatinases (MMP-9). Herein, we greatly expand our investigation of chelating sulfonamides as MMP inhibitors (MMPi) with the synthesis and screening of several new libraries consisting of 2-phenyl-7-sulfonamidobenzimidazole, 2-phenyl-7-sulfonamidobenzoxazole, 7-sulfonamidobenzimidazole, 7-sulfonamidobenzoxazole, and 2-(2-sulfonamidophenyl)-quinoline ZBG derivatives. A novel microwave irradiation synthetic procedure was utilized to rapidly and efficiently prepare these molecules. To better understand the coordination chemistry underlying these ZBGs, crystal structures of representative molecules with several first row transition metals were determined and differences in coordination preferences were considered. Surprisingly, only compounds with the 2-phenyl-7-sulfonamidobenzimidazole ZBG showed inhibition of MMP-2, suggesting that the specific structure of the ZBG can have a pronounced effect of inhibitory activity.
Co-reporter:Amanda L. Garner, Anjali K. Struss, Jessica L. Fullagar, Arpita Agrawal, Amira Y. Moreno, Seth M. Cohen, and Kim D. Janda
ACS Medicinal Chemistry Letters 2012 Volume 3(Issue 8) pp:668
Publication Date(Web):June 19, 2012
DOI:10.1021/ml300128f
Bacterial resistance coupled to our current arsenal of antibiotics presents us with a growing threat to public health, thus warranting the exploration of alternative antibacterial strategies. In particular, the targeting of virulence factors has been regarded as a “second generation” antibiotic approach. In Pseudomonas aeruginosa, a Zn2+ metalloprotease virulence factor, LasB or P. aeruginosa elastase, has been implicated in the development of P. aeruginosa-related keratitis, pneumonia, and burn infection. Moreover, the enzyme also plays a critical role in swarming and biofilm formation, both of which are processes that have been linked to antibiotic resistance. To further validate the importance of LasB in P. aeruginosa infection, we describe our efforts toward the discovery of nonpeptidic small molecule inhibitors of LasB. Using identified compounds, we have confirmed the role that LasB plays in P. aeruginosa swarming and demonstrate the potential for LasB-targeted small molecules in studying antimicrobial-resistant P. aeruginosa phenotypes.Keywords: antibiotics; hydroxypyridinthiones; metalloprotease inhibitors; virulence factors
Co-reporter:Arpita Agrawal;Kasthuraiah Maddali;Jamie DeSoto;Jessica L. Fullagar;Shahrzad Rostami;Douglas D. Richman;Yves Pommier
PNAS 2012 Volume 109 (Issue 7 ) pp:
Publication Date(Web):2012-02-14
DOI:10.1073/pnas.1112389109
A series of HIV integrase (HIV-1 IN) inhibitors were synthesized to evaluate the role of the metal-binding group (MBG) in this class of metalloenzyme inhibitors. A total of 21 different raltegravir-chelator derivative (RCD) compounds were prepared that differed only in the nature of the MBG. These IN strand-transfer inhibitors (INSTIs) were evaluated in vitro in cell-free enzyme activity assays, and the in vitro results were further validated in cell culture experiments. All of the active compounds showed selective inhibition of the strand-transfer reaction over 3′-processing, suggesting a common mode of action with raltegravir. The results of the in vitro activity suggest that the nature of the MBG donor atoms, the overall MBG structure, and the specific arrangement of the MBG donor atom triad are essential for obtaining maximal HIV-1 IN inhibition. At least two compounds (RCD-4, RCD-5) containing a hydroxypyrone MBG were found to display superior strand-transfer inhibition when compared to an abbreviated analogue of raltegravir (RCD-1). By isolating and examining the role of the MBG in a series of INSTIs, we have identified a scaffold (hydroxypyrones) that may provide access to a unique class of HIV-1 IN inhibitors, and may help overcome rising raltegravir resistance.
Co-reporter:Dr. Sang Ho Lim;Yongxuan Su ;Dr. Seth M. Cohen
Angewandte Chemie International Edition 2012 Volume 51( Issue 21) pp:5106-5109
Publication Date(Web):
DOI:10.1002/anie.201200730
Co-reporter:Dr. Sang Ho Lim;Yongxuan Su ;Dr. Seth M. Cohen
Angewandte Chemie 2012 Volume 124( Issue 21) pp:5196-5199
Publication Date(Web):
DOI:10.1002/ange.201200730
Co-reporter:Kristine K. Tanabe and Seth M. Cohen  
Chemical Society Reviews 2011 vol. 40(Issue 2) pp:498-519
Publication Date(Web):23 Nov 2010
DOI:10.1039/C0CS00031K
Metal–organic frameworks (MOFs) are an important class of hybrid inorganic–organic materials. In this tutorial review, a progress report on the postsynthetic modification (PSM) of MOFs is provided. PSM refers to the chemical modification of the MOF lattice in a heterogeneous fashion. This powerful synthetic approach has grown in popularity and resulted in a number of advances in the functionalization and application of MOFs. The use of PSM to develop MOFs with improved gas sorption, catalytic activity, bioactivity, and more robust physical properties is discussed. The results reported to date clearly show that PSM is an important approach for the development and advancement of these hybrid solids.
Co-reporter:Min Kim, John F. Cahill, Kimberly A. Prather and Seth M. Cohen  
Chemical Communications 2011 vol. 47(Issue 27) pp:7629-7631
Publication Date(Web):09 Jun 2011
DOI:10.1039/C1CC12101D
A series of mixed, bifunctional metal–organic frameworks were synthesized and subsequent postsynthetic modification was demonstrated on the two, orthogonal functional sites. The use of differentially ‘tagged’ ligands combined with postsynthetic modification provides a facile route to a large number of functionally diverse materials.
Co-reporter:Jennifer A. Jacobsen ; Jessica L. Fullagar ; Melissa T. Miller
Journal of Medicinal Chemistry 2011 Volume 54(Issue 2) pp:591-602
Publication Date(Web):December 28, 2010
DOI:10.1021/jm101266s
Fragment-based lead design (FBLD) has been used to identify new metal-binding groups for metalloenzyme inhibitors. When screened at 1 mM, a chelator fragment library (CFL-1.1) of 96 compounds produced hit rates ranging from 29% to 43% for five matrix metalloproteases (MMPs), 24% for anthrax lethal factor (LF), 49% for 5-lipoxygenase (5-LO), and 60% for tyrosinase (TY). The ligand efficiencies (LE) of the fragment hits are excellent, in the range of 0.4−0.8 kcal/mol. The MMP enzymes all generally elicit the same chelators as hits from CFL-1.1; however, the chelator fragments that inhibit structurally unrelated metalloenzymes (LF, 5-LO, TY) vary considerably. To develop more advanced hits, one hit from CFL-1.1, 8-hydroxyquinoline, was elaborated at four different positions around the ring system to generate new fragments. 8-Hydroxyquinoline fragments substituted at either the 5- or 7-positions gave potent hits against MMP-2, with IC50 values in the low micromolar range. The 8-hydroxyquinoline represents a promising new chelator scaffold for the development of MMP inhibitors that was discovered by use of a metalloprotein-focused chelator fragment library.
Co-reporter:Min Kim ; Sergio J. Garibay
Inorganic Chemistry 2011 Volume 50(Issue 3) pp:729-731
Publication Date(Web):January 5, 2011
DOI:10.1021/ic102436b
A microwave-assisted postsynthetic modification (PSM) reaction on a metal−organic framework (MOF) has been realized. Cyanation of the Zr4+-based UiO-66-Br was achieved with CuCN and microwave irradiation to produce UiO-66-CN. This protocol represents a notable example of PSM on an aryl halide MOF producing a cyano-functionalized MOF.
Co-reporter:Chao Chen ; Corinne A. Allen
Inorganic Chemistry 2011 Volume 50(Issue 21) pp:10534-10536
Publication Date(Web):October 10, 2011
DOI:10.1021/ic2017598
A postsynthetic modification (PSM) scheme for metal–organic frameworks (MOFs) has been developed using a tetrazine-based “Click” reaction. It was found that the efficacy of this modification procedure was dependent on the MOF topology and, in the case of an isoreticular MOF (IRMOF) system, required the formation of a mixed-ligand IRMOF with a suitable ratio of 1,4-benzenedicarboxylate (BDC) and an olefin-tagged BDC derivative. On the basis of the versatile use of tetrazine “Click” chemistry in bioconjugate chemistry, we expect that this scheme will prove to be a useful reaction for preparing functionalized materials, including MOFs.
Co-reporter:Matthieu Rouffet and Seth M. Cohen  
Dalton Transactions 2011 vol. 40(Issue 14) pp:3445-3454
Publication Date(Web):02 Feb 2011
DOI:10.1039/C0DT01743D
Numerous metalloproteins are important therapeutic targets that are gaining increased attention in the medicinal and bioinorganic chemistry communities. This Perspective article describes some emerging trends and recent findings in the area of metalloprotein inhibitor discovery and development. In particular, increasing recognition of the importance of the metal–ligand interactions in these systems calls for more input and consideration from the bioinorganic community to address questions traditionally confined to the medicinal chemistry community.
Co-reporter:Dr. Min Kim;Jake A. Boissonnault;Phuong V. Dau;Dr. Seth M. Cohen
Angewandte Chemie 2011 Volume 123( Issue 51) pp:12401-12404
Publication Date(Web):
DOI:10.1002/ange.201106429
Co-reporter:Dr. Min Kim;Jake A. Boissonnault;Phuong V. Dau;Dr. Seth M. Cohen
Angewandte Chemie International Edition 2011 Volume 50( Issue 51) pp:12193-12196
Publication Date(Web):
DOI:10.1002/anie.201106429
Co-reporter:Kevin B. Daniel;Jody L. Major Jourden
JBIC Journal of Biological Inorganic Chemistry 2011 Volume 16( Issue 2) pp:313-323
Publication Date(Web):2011 February
DOI:10.1007/s00775-010-0727-x
This study details the development of matrix metalloproteinase inhibitor prodrugs (proMMPi) that are activated in the presence of reactive-oxygen species (ROS). Conventional matrix metalloproteinase inhibitors (MMPi) utilize a zinc-binding group (ZBG) that chelates to the catalytic zinc(II) ion of matrix metalloproteinases (MMPs) to inhibit their activity. To create ROS-sensitive prodrugs, sulfonate esters were used as a protecting group for the ZBG to block their metal binding ability. Surprisingly, these sulfonate esters were found to be cleaved by H2O2 only when the ZBG contained an N-oxide donor atom moiety. Sulfonate ester derivatives of full-length MMPi based on these ROS-triggerable systems were synthesized. It was found that proMMPi with sulfonate ester protecting groups showed relatively high rates of cleavage in the presence of H2O2 to release the active MMPi. In vitro MMP inhibition studies confirmed a significant increase in inhibitory activity of proMMPi upon addition of H2O2, demonstrating the use of sulfonate esters to act as cleavable triggers for ROS-activated prodrugs.
Co-reporter:Matthieu Rouffet ; César Augusto F. de Oliveira ; Yael Udi ; Arpita Agrawal ; Irit Sagi ; J. Andrew McCammon
Journal of the American Chemical Society 2010 Volume 132(Issue 24) pp:8232-8233
Publication Date(Web):May 27, 2010
DOI:10.1021/ja101088j
Derived from the extensive work in the area of small molecule zinc(II) ion sensors, chelating fragment libraries of quinoline- and benzimidazole-sulfonamides have been prepared and screened against several different zinc(II)-dependent matrix metalloproteinases (MMPs). The fragments show impressive inhibition of these metalloenzymes and preferences for different MMPs based on the nature of the chelating group. The findings show that focused chelator libraries are a powerful strategy for the discovery of lead fragments for metalloprotein inhibition.
Co-reporter:Joseph G. Nguyen
Journal of the American Chemical Society 2010 Volume 132(Issue 13) pp:4560-4561
Publication Date(Web):March 16, 2010
DOI:10.1021/ja100900c
Postsynthetic covalent modification of metal−organic frameworks (MOFs) with long alkyl substituents is shown to protect these materials against moisture. These MOFs, which normally display hydrophilic properties, are readily converted into hydrophobic or superhydrophobic materials. Overcoming the inherent sensitivity of MOFs to water represents a major step forward in their widespread use in technology applications.
Co-reporter:Seth M. Cohen  
Chemical Science 2010 vol. 1(Issue 1) pp:32-36
Publication Date(Web):12 May 2010
DOI:10.1039/C0SC00127A
The postsynthetic modification (PSM) of metal–organic frameworks (MOFs) has grown substantially in the past few years. In this minireview, recent progress in the area of PSM is highlighted, with an emphasis on several recent advancements. The scope and limitations of PSM are described and future prospects are discussed.
Co-reporter:Sergio J. Garibay and Seth M. Cohen  
Chemical Communications 2010 vol. 46(Issue 41) pp:7700-7702
Publication Date(Web):27 Sep 2010
DOI:10.1039/C0CC02990D
Amino, bromo, nitro, and naphthalene functionalized UiO-66 metal–organic frameworks have been synthesized through reticular chemistry. UiO-66–NH2 is shown to be suitable for postsynthetic modification with a variety of anhydrides to generate new, functionalized frameworks.
Co-reporter:Jody L. Major Jourden and Seth M. Cohen  
Chemical Communications 2010 vol. 46(Issue 8) pp:1241-1243
Publication Date(Web):18 Jan 2010
DOI:10.1039/B923302D
Matrix metalloproteinase inhibitors (MMPi) possessing a glucose protecting group on the zinc-binding group (ZBG) show a dramatic increase in inhibitory activity upon cleavage by β-glucosidase.
Co-reporter:Kristine K. Tanabe
Inorganic Chemistry 2010 Volume 49(Issue 14) pp:6766-6774
Publication Date(Web):June 21, 2010
DOI:10.1021/ic101125m
Metal−organic frameworks (MOFs) have shown promise as heterogeneous catalysts because of their high crystallinity, uniform pores, and ability to be chemically and physically tuned for specific chemical transformations. One of the challenges with MOF-based catalysis is few systems achieve all of the desired features for a heterogeneous catalyst, including high activity, robustness (recyclability), and excellent selectivity. Herein, postsynthetic modification (PSM) of a MOF is used to synthesize a series of MOF catalysts that are highly robust and active for epoxide ring-opening reactions. In the following study, four metalated MOFs (UMCM-1-AMInpz, UMCM-1-AMInsal, UMCM-1-AMFesal, and UMCM-1-AMCupz) are examined as catalysts for β-azido and β-amino alcohol synthesis with epoxides of varying sizes and shapes using two different nucleophiles (TMSN3 and aniline). The four MOFs are isostructural, exhibit good thermal and structural stability, and display different catalytic activities based on the combination of metal ion and chelating ligand immobilized within the framework. In particular, UMCM-1-AMInpz and UMCM-1-AMInsal act as robust, single-site catalysts with distinct selectivity for ring-opening reactions with specific nucleophiles. More importantly, one of these catalysts, UMCM-1-AMInpz, selectively promotes the ring-opening of cis-stilbene oxide in the presence of trans-stilbene oxide, which cannot be achieved with a comparable molecular Lewis acid catalyst. The results show that PSM is a promising, modular, and highly tunable approach for the discovery of robust, active, and selective MOF catalysts that combine the best aspects of homogeneous and heterogeneous systems.
Co-reporter:Sergio J. Garibay, Zhenqiang Wang and Seth M. Cohen
Inorganic Chemistry 2010 Volume 49(Issue 17) pp:8086-8091
Publication Date(Web):August 10, 2010
DOI:10.1021/ic1011549
A metal−organic framework (MOF) containing 2-amino-1,4-benzenedicarboxylate (NH2−BDC) as a building block is shown to undergo chemical modification with a set of cyclic anhydrides. The modification of the aluminum-based MOF known as MIL-53(Al)-NH2 (MIL = Matérial Institut Lavoisier) by these reagents is demonstrated by using a variety of methods, including NMR and electrospray ionization mass spectrometry (ESI-MS), and the structural integrity of the modified MOFs has been confirmed by thermal gravimetric analysis (TGA) and powder X-ray diffraction (PXRD). Reaction with these cyclic anhydrides produces MOFs that display carboxylic acid functional groups within their pores. Furthermore, it is shown that maleic acid functionalized MIL-53(Al)-AMMal can act as a Brønsted acid catalyst and facilitate the methanolysis of several small epoxides. Experiments show that MIL-53(Al)-AMMal acts in a heterogeneous manner and is recyclable with consistent activity over at least three catalytic cycles. The findings presented here demonstrate several important features of covalent postsynthetic modification (PSM) on MOFs, including (1) facile introduction of catalytic functionality using simple organic reagents (e.g., anhydrides); (2) the ability to utilize and recycle organocatalytic MOFs; (3) control of catalytic activity through choice of functional group. The findings clearly illustrate that covalent postsynthetic modification represents a powerful means to access new MOF compounds that serve as organocatalytic materials.
Co-reporter:David Martin, Matthieu Rouffet, and Seth M. Cohen
Inorganic Chemistry 2010 Volume 49(Issue 22) pp:10226-10228
Publication Date(Web):October 13, 2010
DOI:10.1021/ic101700t
The synthesis, structure, and solution spectroscopy of several (2-sulfonamidophenyl)benzimidazole metal complexes are reported. These ligands, which have been reported as selective molecular sensors for Zn2+, readily form complexes with Co2+, Ni2+, Cu2+, and Zn2+. Surprisingly, the ligand adopts different binding modes depending on the metal ion. The work here provides insight into the coordination chemistry of these ligands, which may allow for the development of improved metal-ion sensors and metalloprotein inhibitors.
Co-reporter:Joseph G. Nguyen, Kristine K. Tanabe and Seth M. Cohen  
CrystEngComm 2010 vol. 12(Issue 8) pp:2335-2338
Publication Date(Web):10 Apr 2010
DOI:10.1039/C000154F
Two different metal–organic frameworks (MOFs) have been modified with nitric oxide (NO) through covalent postsynthetic modification (PSM) to form diazeniumdiolate-functionalized and releasing MOFs.
Co-reporter:Jennifer A. Jacobsen, Jay R. Stork, Douglas Magde and Seth M. Cohen  
Dalton Transactions 2010 vol. 39(Issue 3) pp:957-962
Publication Date(Web):27 Nov 2009
DOI:10.1039/B921772J
Boron difluoride adducts of diamidodipyrromethenes have been synthesized and characterized. The compounds represent a new group of the BODIPY family of fluorescent dyes. X-ray crystallography and solution 19F NMR experiments show that a persistent hydrogen bond is formed between the boron-bound fluoride groups and the peripheral amide substituents. The modular synthesis of these compounds and their robust photophysical properties suggest that they may be useful compounds for materials and biological photochemical applications.
Co-reporter:Kristine K. Tanabe;Corinne A. Allen ; Seth M. Cohen
Angewandte Chemie 2010 Volume 122( Issue 50) pp:9924-9927
Publication Date(Web):
DOI:10.1002/ange.201004736
Co-reporter:Dr. JodyL. MajorJourden ; SethM. Cohen
Angewandte Chemie 2010 Volume 122( Issue 38) pp:6947-6949
Publication Date(Web):
DOI:10.1002/ange.201003819
Co-reporter:Kristine K. Tanabe;Corinne A. Allen ; Seth M. Cohen
Angewandte Chemie International Edition 2010 Volume 49( Issue 50) pp:9730-9733
Publication Date(Web):
DOI:10.1002/anie.201004736
Co-reporter:Dr. JodyL. MajorJourden ; SethM. Cohen
Angewandte Chemie International Edition 2010 Volume 49( Issue 38) pp:6795-6797
Publication Date(Web):
DOI:10.1002/anie.201003819
Co-reporter:Christophe Volkringer Dr. ;SethM. Cohen
Angewandte Chemie International Edition 2010 Volume 49( Issue 27) pp:4644-4648
Publication Date(Web):
DOI:10.1002/anie.201001527
Co-reporter:Zhenqiang Wang;KristineK. Tanabe ;SethM. Cohen
Chemistry - A European Journal 2010 Volume 16( Issue 1) pp:212-217
Publication Date(Web):
DOI:10.1002/chem.200902158

Abstract

Postsynthetic modification is presented as a means to tune the hydrogen adsorption properties of a series of metal–organic frameworks (MOFs). IRMOF-3 (isoreticular metal–organic framework), UMCM-1-NH2 (University of Michigan crystalline material), and DMOF-1-NH2 (DABCO metal–organic framework) have been covalently modified with a series of anhydrides or isocyanates and the hydrogen sorption properties have been studied. Both the storage capacities and isosteric heats of adsorption clearly show that covalent postsynthetic modification can significantly enhance the sorption affinity of MOFs with hydrogen and in some cases increase both gravimetric and volumetric uptake of the gas as much as 40 %. The significance of the present study is illustrated by: 1) the nature of the substituents introduced by postsynthetic modification result in different effects on the binding of hydrogen; 2) the covalent postsynthetic modification approach allows for systematic modulation of hydrogen sorption properties; and 3) the ease of postsynthetic modification of MOFs allows a direct evaluation of the interplay between MOF structure, hydrogen uptake, and heat of adsorption. The findings presented herein show that postsynthetic modification is a powerful method to manipulate and better understand the gas sorption properties of MOFs.

Co-reporter:Arpita Agrawal;SheridaL. Johnson Dr.;JenniferA. Jacobsen;MelissaT. Miller;Li-Hsing Chen;Maurizio Pellecchia ;SethM. Cohen
ChemMedChem 2010 Volume 5( Issue 2) pp:195-199
Publication Date(Web):
DOI:10.1002/cmdc.200900516
Co-reporter:Christophe Volkringer Dr. ;SethM. Cohen
Angewandte Chemie 2010 Volume 122( Issue 27) pp:4748-4752
Publication Date(Web):
DOI:10.1002/ange.201001527
Co-reporter:Zhenqiang Wang and Seth M. Cohen  
Chemical Society Reviews 2009 vol. 38(Issue 5) pp:1315-1329
Publication Date(Web):20 Jan 2009
DOI:10.1039/B802258P
The modification of metal–organic frameworks (MOFs) in a postsynthetic scheme is discussed in this critical review. In this approach, the MOF is assembled and then modified with chemical reagents with preservation of the lattice structure. Recent findings show amide couplings, isocyanate condensations, ‘click’ chemistry, and other reactions are suitable for postsynthetic modification (PSM). In addition, a number of MOFs, from IRMOF-3 to ZIF-90, are amenable to PSM. The generality of PSM, in both scope of chemical reactions and range of suitable MOFs, clearly indicates that the approach is broadly applicable. Indeed, the rapid increase in reports on PSM demonstrates this methodology will play an increasingly important role in the development of MOFs for the foreseeable future (117 references).
Co-reporter:Zhenqiang Wang
Journal of the American Chemical Society 2009 Volume 131(Issue 46) pp:16675-16677
Publication Date(Web):November 3, 2009
DOI:10.1021/ja907742z
Postsynthetic covalent modification of a metal−organic framework (MOF) is shown to activate “breathing” behavior upon adsorption of certain gases. The findings reported suggest that chemical modification can be used to trigger, tune, and control the flexibility of MOFs in an unprecedented fashion. By manipulation of MOF breathing and flexibility, the development of new MOFs with selective gas adsorption properties may be realized.
Co-reporter:Arpita Agrawal ; César Augusto F. de Oliveira ; Yuhui Cheng ; Jennifer A. Jacobsen ; J. Andrew McCammon
Journal of Medicinal Chemistry 2009 Volume 52(Issue 4) pp:1063-1074
Publication Date(Web):January 26, 2009
DOI:10.1021/jm8013212
Anthrax lethal factor (LF) is a critical virulence factor in the pathogenesis of anthrax. A structure−activity relationship (SAR) of potential lethal factor inhibitors (LFi) is presented in which the zinc-binding group (ZBG), linker, and backbone moieties for a series of hydroxypyrone-based compounds were systematically varied. It was found that hydroxypyrothione ZBGs generate more potent inhibitors than hydroxypyrone ZBGs. Furthermore, coupling the hydroxypyrothione to a backbone group via a thioamide bond improves potency when compared to an amide linker. QM/MM studies show that the thioamide bond in these inhibitors allows for the formation of two additional hydrogen bonds with the protein active site. In both types of hydroxypyrothione compounds, ligand efficiencies of 0.29−0.54 kcal mol−1 per heavy atom were achieved. The results highlight the need for a better understanding to optimize the interplay between the ZBG, linker, and backbone to get improved LFi.
Co-reporter:Zhenqiang Wang, Kristine K. Tanabe and Seth M. Cohen
Inorganic Chemistry 2009 Volume 48(Issue 1) pp:296-306
Publication Date(Web):November 20, 2008
DOI:10.1021/ic801837t
2-Amino-1,4-benzenedicarboxylic acid (NH2−BDC) has been found to be a compatible building block for the construction of two new metal-organic frameworks (MOFs) that have structures isoreticular to reported MOFs that use 1,4-benzenedicarboxylic acid (BDC) as a building block. DMOF-1-NH2 (DABCO MOF-1-NH2) is a derivative of a previously studied MOF that contains two-dimensional square grids based on NH2−BDC and zinc(II) paddle-wheel units; the grid layers are connected by DABCO (1,4-diazabicyclo[2.2.2]octane) molecules that coordinate in the axial positions of the paddlewheel secondary-building units (SBUs). UMCM-1-NH2 is an NH2−BDC derivative of UMCM-1 (University of Michigan Crystalline Material-1), a highly porous MOF reported by Matzger et al., and consists of both NH2−BDC and BTB (BTB = 4,4′,4′′-benzene-1,3,5-triyl-tribenzoate) linkers with Zn4O SBUs. The structure of UMCM-1-NH2 was confirmed by single-crystal X-ray diffraction. By using NH2−BDC to generate these MOFs, the pendant amino groups can serve as a chemical handle that can be manipulated via postsynthetic modification with alkyl anhydrides. Reactions of each MOF and different anhydrides have been performed to compare the extent of conversion, thermal and structural stability, and Brunauer−Emmett−Teller surface areas afforded by the resulting materials. Under comparable reaction conditions, 1H NMR of digested samples show that UMCM-1-NH2 has conversions comparable to that of IRMOF-3, while DMOF-1-NH2 only shows high conversions with smaller anhydrides. Under specific reaction conditions, higher conversions were obtained with complete retention of crystallinity, as verified by single-crystal X-ray diffraction experiments. The results presented here demonstrate three important findings: (a) NH2−BDC can be used as a surrogate for BDC in a number of MOFs thereby providing a handle for postsynthetic modification, (b) postsynthetic modification is a general strategy to functionalizing MOFs that can be applied to a variety of MOF structures, and (c) the topology and chemical/thermal stability of a MOF can influence the type of chemical reactions and reagents that can be used for postsynthetic modification.
Co-reporter:Sergio J. Garibay, Zhenqiang Wang, Kristine K. Tanabe and Seth M. Cohen
Inorganic Chemistry 2009 Volume 48(Issue 15) pp:7341-7349
Publication Date(Web):July 6, 2009
DOI:10.1021/ic900796n
An isoreticular metal-organic framework (IRMOF-3) containing 2-amino-1,4-benzenedicarboxylic acid (NH2−BDC) as a building block is shown to undergo chemical modification with a diverse series of anhydrides and isocyanates. The modification of IRMOF-3 by these reagents has been evidenced by using a variety of methods, including NMR and electrospray ionization mass spectrometry, and the structural integrity of the modified MOFs has been confirmed by thermogravimetric analysis, powder X-ray diffraction, and gas sorption analysis. The results show that a variety of functional groups can be introduced onto the MOF including amines, carboxylic acids, and chiral groups. Furthermore, it is shown that tert-butyl-based asymmetric anhydrides can be used to selectively deliver chemical payloads to the IRMOF. Finally, the results demonstrate that at least four different chemical modifications can be performed on IRMOF-3 and that the reaction conditions can be modulated to control the relative abundance of each group. The findings presented here demonstrate several important features of postsynthetic modification on IRMOF-3, including (1) facile introduction of a wide range of functional groups using simple reagents (e.g., anhydrides and isocyanates), (2) the introduction of multiple (as many as four different) substituents into the MOF lattice, and (3) control over reaction conditions to preserve the crystallinity and microporosity of the resultant MOFs. The findings clearly illustrate that postsynthetic modification represents a powerful means to access new MOF compounds with unprecedented chemical complexity, which may serve as the basis of multifunctional materials.
Co-reporter:Yi-Long Yan, Melissa T. Miller, Yuchen Cao, Seth M. Cohen
Bioorganic & Medicinal Chemistry Letters 2009 Volume 19(Issue 7) pp:1970-1976
Publication Date(Web):1 April 2009
DOI:10.1016/j.bmcl.2009.02.044
The zinc(II)-dependent matrix metalloproteinases (MMPs) are associated with a variety of diseases. Development of inhibitors to modulate MMP activity has been an active area of investigation for therapeutic development. Hydroxypyrones and hydroxythiopyrones are alternative zinc-binding groups (ZBGs) that, when combined with peptidomimetic backbones, comprise a novel class of MMP inhibitors (MMPi). In this report, a series of hydroxypyrone- and hydroxythiopyrone-based MMPi with aryl backbones at the 2-, 5-, and 6-positions of the hydroxypyrone ring have been synthesized. Synthetic routes for developing inhibitors with substituents at two of these positions (so-called double-handed inhibitors) are also explored. The MMP inhibition profiles and structure–activity relationship of synthesized hydroxypyrones and hydroxythiopyrones have been analyzed. The results here show that the ZBG, the position of the backbone on the ZBG, and the nature of the linker between the ZBG and backbone are critical for MMPi activities.
Co-reporter:KristineK. Tanabe ;SethM. Cohen
Angewandte Chemie International Edition 2009 Volume 48( Issue 40) pp:7424-7427
Publication Date(Web):
DOI:10.1002/anie.200903433
Co-reporter:KristineK. Tanabe ;SethM. Cohen
Angewandte Chemie 2009 Volume 121( Issue 40) pp:7560-7563
Publication Date(Web):
DOI:10.1002/ange.200903433
Co-reporter:Emily Dugan, Zhenqiang Wang, Marilyn Okamura, Annette Medina and Seth M. Cohen  
Chemical Communications 2008 (Issue 29) pp:3366-3368
Publication Date(Web):03 Jun 2008
DOI:10.1039/B806150E
Isoreticular metal–organic framework-3 (IRMOF-3) has been postsynthetically modified with isocyanates to generate unprecedented, microporous urea-functionalized frameworks.
Co-reporter:Van S. Thoi ; Jay R. Stork ; Edwards T. Niles ; Ezra C. Depperman ; David L. Tierney
Inorganic Chemistry 2008 Volume 47(Issue 22) pp:10533-10541
Publication Date(Web):October 21, 2008
DOI:10.1021/ic8011876
A straightforward, facile synthesis of diamidodipyrromethenes (diamidodipyrrins, DADPR,R′) is presented. These tetradentate ligands readily form complexes with metal ions such as Ni2+ and Cu2+ and can adopt different binding modes with these metals. One version of the ligand (DADPPh,iPr) has been structurally characterized in its “free base” form, as a HBr salt, and as the Ni2+ and Cu2+ complexes. A symmetric NNOO donor set is found for the Cu2+ complex in the solid state, involving two carbonyl oxygen atoms and two dipyrrin nitrogen atoms, and this coordination mode has been confirmed in solution by electron paramagnetic resonance. An asymmetric NNNO binding mode found for the Ni2+ complex in the solid state persists in solution as revealed by 1H NMR. The HBr salt form of the ligand shows an intriguing hydrogen-bonded head-to-head dimer arrangement. Experiments show that Cu2+, but not Ni2+, can mediate the rapid oxidation of the diamidodipyrromethane precursors to the diamidodipyrromethene ligands in the presence of dioxygen. The work here shows that diamidodipyrrins are a versatile new class of ligands in the area of nonporphyrinic pyrrole-based compounds that merit further investigation.
Co-reporter:Arpita Agrawal;Diego Romero-Perez;JenniferA. Jacobsen;FranciscoJ. Villarreal;SethM. Cohen
ChemMedChem 2008 Volume 3( Issue 5) pp:812-820
Publication Date(Web):
DOI:10.1002/cmdc.200700290

Abstract

The need for selective matrix metalloproteinase (MMP) inhibition is of interest because of the range of pathologies mediated by different MMP isoforms. The development of more selective MMP inhibitors (MMPi) may help to overcome some of the undesired side effects that have hindered the clinical success of these compounds. In an effort to devise new approaches to selective inhibitors, herein we describe several novel MMPi and show that their selectivity is dependent on the nature of the zinc-binding group (ZBG). This is in contrast to most current MMPi, which obtain isoform selectivity solely from the peptidomimetic backbone portion of the compound. In the present study, six different hydroxypyrone and hydroxypyridinone ZBGs were appended to a common biphenyl backbone and the inhibition efficiency of each inhibitor was determined in vitro (IC50 values) against MMP-1, -2, -3, -7, -8, -9, -12, and -13. The results show that the selectivity profile of each inhibitor is different as a result of the various ZBGs. Computational modeling studies were used to explain some trends in the observed selectivity profiles. To assess the importance of the ZBG in a biological model, two of the semiselective, potent MMPi (and one control) were evaluated using an isolated perfused rat heart system. Hearts were subjected to ischemia reperfusion injury, and recovery of contractile function was examined. In this model, only one of the two MMPi showed significant and sustained heart recovery, demonstrating that the choice of ZBG can have a significant effect in a relevant pathophysiological endpoint.

Co-reporter:Zhenqiang Wang Dr. ;SethM. Cohen
Angewandte Chemie International Edition 2008 Volume 47( Issue 25) pp:4699-4702
Publication Date(Web):
DOI:10.1002/anie.200800686
Co-reporter:Zhenqiang Wang Dr. ;SethM. Cohen
Angewandte Chemie 2008 Volume 120( Issue 25) pp:4777-4780
Publication Date(Web):
DOI:10.1002/ange.200800686
Co-reporter:Sergio J. Garibay, Jay R. Stork, Zhenqiang Wang, Seth M. Cohen and Shane G. Telfer  
Chemical Communications 2007 (Issue 46) pp:4881-4883
Publication Date(Web):25 Sep 2007
DOI:10.1039/B712118K
Carboxylate-decorated tris(dipyrrinato) cobalt(III) complexes have been used to construct 2-D and 3-D metal–organic frameworks with infinite and trinuclear zinc secondary-building units.
Co-reporter:Sara R. Halper, Jay R. Stork and Seth M. Cohen  
Dalton Transactions 2007 (Issue 10) pp:1067-1074
Publication Date(Web):08 Feb 2007
DOI:10.1039/B615801C
Asymmetric α-substituted dipyrrins have been synthesized and characterized. The compounds were formed by a metal mediated reaction involving a single alkoxy group substituted into the α-position of an α,β-unsubstituted dipyrrin. An α-methoxy dipyrrin, 5-(4-cyanophenyl)-1-methoxydipyrrin (α-OMe-4-cydpm), was prepared from 5-(4-cyanophenyl)-4,6-dipyrromethane. Methoxy, ethoxy, and propoxy derivatives (α-OMe-4-mecdpm, α-OEt-4-mecdpm, α-OPr-4-mecdpm) of 5-(4-methoxycarbonylphenyl)-4,6-dipyrromethane have also been prepared. A homoleptic, bis(1-methoxy)dipyrrinato zinc(II) complex, [Zn(α-OMe-4-mecdpm)2], has been synthesized, as has a heteroleptic cobalt(III) complex with one α-OMe-4-cydpm ligand and two unsubstituted 5-(4-cyanophenyl)dipyrrin (4-cydpm) ligands ([Co(α-OMe-4-cydpm)(4-cydpm)2]). The rotational barrier of the meso-aryl substituent of [Zn(α-OMe-4-mecdpm)2] was found to be 17.3 kcal mol−1 by variable-temperature NMR spectroscopy. The compounds α-OMe-4-cydpm and [Zn(α-OMe-4-mecdpm)2] have also been characterized by X-ray diffraction. The formation of the new dipyrrin derivatives is shown to be general and can be performed on dipyrrins with various meso-aryl substitutents, with a variety of alcohols, and can be promoted by several metal salts.
Co-reporter:Faith E. Jacobsen, Jana A. Lewis, Katie J. Heroux, Seth M. Cohen
Inorganica Chimica Acta 2007 Volume 360(Issue 1) pp:264-272
Publication Date(Web):1 January 2007
DOI:10.1016/j.ica.2006.07.044
The tetrahedral zinc and cobalt complexes [(TpPh,Me)ZnOH] (TpPh,Me = hydrotris(3,5-phenylmethylpyrazolyl)borate) and [(TpPh,Me)CoCl] were combined with 3-hydroxy-2H-pyran-2-one (3,2-pyrone), 3-hydroxy-4H-pyran-4-one (3,4-pyrone), and tropolone to form the corresponding [(TpPh,Me)M(L)] complexes (L = bidentate ligand, M = Zn2+, Co2+). X-ray crystal structures of these complexes were obtained to determine the mode of binding for each chelator and the coordination geometry of each complex. The complexes [(TpPh,Me)M(3,2-pyrone)] (M = Zn2+, Co2+) are the first structurally characterized metal complexes with this chelator. These complexes with the various chelators show that the cobalt(II) complexes are generally isostructural with their zinc(II) counterparts. In addition to structural characterization, inhibition data for each ligand against two different zinc(II) metalloproteins, matrix metalloproteinase-3 (MMP-3) and anthrax lethal factor (LF), were obtained. Examination of these chelators in the MMP-3 active site demonstrates the possible mode of inhibition.Model complexes of zinc(II) and cobalt(II) have been used to predict the interaction of 3,2-pyrone, 3,4-pyrone, and tropolone with the active site metal ion of zinc metalloproteinases. The six new metal complexes have been structurally and spectroscopically characterized. The complexes with 3,2-pyrone represent the first reported metal complexes with this chelator. The results of these studies will be used to facilitate design of metalloproteinase inhibitors derived from these ligating groups.
Co-reporter:Faith E. Jacobsen;Jana A. Lewis;Seth M. Cohen
ChemMedChem 2007 Volume 2(Issue 2) pp:
Publication Date(Web):13 DEC 2006
DOI:10.1002/cmdc.200600204

A number of metalloproteins are important medicinal targets for conditions ranging from pathogenic infections to cancer. Many but not all of these metalloproteins contain a zinc(II) ion in the protein active site. Small-molecule inhibitors of these metalloproteins are designed to bind directly to the active site metal ions. In this review several metalloproteins of interest are discussed, including matrix metalloproteinases (MMPs), histone deacetylases (HDACs), anthrax lethal factor (LF), and others. Different strategies that have been employed to design effective inhibitors against these proteins are described, with an effort to highlight the strengths and drawbacks of each approach. An emphasis is placed on examining the bioinorganic chemistry of these metal active sites and how a better understanding of the coordination chemistry in these systems may lead to improved inhibitors. It is hoped that this review will help inspire medicinal, biological, and inorganic chemists to tackle this important problem by considering all aspects of metalloprotein inhibitor design.

Co-reporter:Misha Golynskiy;Sheng Li
JBIC Journal of Biological Inorganic Chemistry 2007 Volume 12( Issue 5) pp:699-709
Publication Date(Web):2007 June
DOI:10.1007/s00775-007-0216-z
The manganese transport regulator (MntR) of Bacillus subtilis is a metalloregulatory protein responsible for regulation of genes involved in manganese uptake by this organism. MntR belongs to the iron-responsive DtxR family, but is allosterically regulated by manganese and cadmium ions. Having previously characterized the metal binding affinities of this protein as well as the DNA-binding activation profiles for the relevant metal ions, we have focused the current study on investigating the structural changes of MntR in solution upon binding divalent transition metal ions. Deuterium exchange mass spectrometry was utilized to investigate the deuterium exchange dynamics between apo-MntR, Co2+-MntR, Cd2+-MntR, and Mn2+-MntR. Comparing the rates of deuteration of each metal-bound form of MntR reveals that the N-terminal DNA-binding motif is more mobile in solution than the C-terminal dimerization domain. Furthermore, significant protection from deuterium exchange is observed in the helices that contribute metal-chelating amino acids to form the metal binding site of MntR. In contrast, the bulk of the DNA-binding winged helix–turn–helix motif shows no difference in deuterium exchange upon metal binding. Mapping of the deuteration patterns onto the crystal structures of MntR yields insight into how metal binding affects the protein structure and complements earlier studies on the mechanism of MntR. Metal binding acts to rigidify MntR, thereby limiting the mobility of the protein and reducing the entropic cost of DNA binding.
Co-reporter:Ba L. Tran and Seth M. Cohen  
Chemical Communications 2006 (Issue 2) pp:203-205
Publication Date(Web):16 Nov 2005
DOI:10.1039/B512185J
Transition-metal complexes of 3-hydroxyflavothiones have been prepared and structurally characterized; the photochemical properties of these complexes have been examined and are discussed in the context of the use of these compounds as photodegradable pesticides.
Co-reporter:Drew L. Murphy, Mitchell R. Malachowski, Charles F. Campana and Seth M. Cohen  
Chemical Communications 2005 (Issue 44) pp:5506-5508
Publication Date(Web):05 Oct 2005
DOI:10.1039/B510915A
A novel tris(chelate) metalloligand has been used to synthesize a chiral, heterometallic metal–organic framework that is robust to solvent removal and shows selective uptake of nitroaromatic compounds.
Co-reporter:Loi Do, Sara R. Halper and Seth M. Cohen  
Chemical Communications 2004 (Issue 23) pp:2662-2663
Publication Date(Web):11 Oct 2004
DOI:10.1039/B411991F
Heteroleptic copper complexes containing an acetylacetonato ligand and a thioether derivatized dipyrrinato ligand are shown to form oligomers and polymers in the solid state.
Co-reporter:Sara R. Halper
Angewandte Chemie 2004 Volume 116(Issue 18) pp:
Publication Date(Web):22 APR 2004
DOI:10.1002/ange.200353520

Kupfer(II)-Komplexe mit dem Dipyrromethen-Liganden bilden molekulare Sechsecke (grün) und Doppelhelix-Koordinationspolymere (blau und gelb) innerhalb eines einzigen, durch Selbstsegregation von CF3-Gruppen organisierten Kristallgitters.

Co-reporter:Sara R. Halper
Angewandte Chemie International Edition 2004 Volume 43(Issue 18) pp:
Publication Date(Web):22 APR 2004
DOI:10.1002/anie.200353520

Copper(II) complexes based on dipyrromethene ligands self-assemble into molecular hexagons (green) and double-helical coordination polymers (blue and yellow) within the same crystalline lattice organized by the self-segregation of CF3 groups.

Co-reporter:David T. Puerta and Seth M. Cohen  
Chemical Communications 2003 (Issue 11) pp:1278-1279
Publication Date(Web):02 May 2003
DOI:10.1039/B300453H
A metallamacrocycle containing twelve Zn2+ ions, making it the largest member of a family of pyrazole-bridged cyclic metal clusters, has been synthesized and structurally characterized from the reaction of [Zn(ClO4)2] with 5-methyl-3-phenylpyrazole, 2-mercaptoethanol, and NaOH.
Co-reporter:Sara R. Halper
Chemistry - A European Journal 2003 Volume 9(Issue 19) pp:
Publication Date(Web):26 SEP 2003
DOI:10.1002/chem.200305041

The synthesis, structure, and spectroscopic characterization of a series of phenylacetylenylene rodlike molecules containing dipyrromethene (dipyrrin) ligands are described. The combination of the phenylacetylenylene groups with the porphyrinogenic dipyrrin moieties results in a rich absorption spectroscopy for these compounds, although the fluorescence of the phenylacetylenylene moiety is quenched by presence of the dipyrrin chelator. The Cu2+ and Fe3+ complexes of these ligands have been prepared and three of these compounds have been structurally characterized by using single-crystal X-ray diffraction. Unlike other octahedral metal-dipyrrin complexes described to date, one of the iron complexes demonstrates ideal threefold symmetry in the solid-state. The elongated structure and high symmetry of these complexes suggests the use of these meso-substituted phenylacetylenylene ligands as an interesting class of extended, branched molecules for the construction of supramolecular architectures.

Co-reporter:David T. Puerta;Julie R. Schames;Richard H. Henchman;J. Andrew McCammon
Angewandte Chemie International Edition 2003 Volume 42(Issue 32) pp:
Publication Date(Web):13 AUG 2003
DOI:10.1002/anie.200351433

A happy marriage: The combination of synthetic model chemistry with computational conformational analysis has revealed the binding of an inhibitor to a medically important metalloenzyme. [(TpPh,Me)Zn(mbt)] (TpPh,Me=hydrotris(3,5-phenylmethylpyrazolyl)borate, mbt=2-methoxybenzenethiol) was used to template the conformation of a known inhibitor in the active site of the metalloenzyme, as shown by the green ligand inside the active site of the protein (the ZnII ion is shown in purple).

Co-reporter:David T. Puerta;Julie R. Schames;Richard H. Henchman;J. Andrew McCammon
Angewandte Chemie 2003 Volume 115(Issue 32) pp:
Publication Date(Web):13 AUG 2003
DOI:10.1002/ange.200351433

Synergie: Die Kombination von synthetischen Modellverbindungen mit computergestützter Konformationsanalyse ermöglichte die Aufklärung der Bindung eines Inhibitors an ein medizinisch bedeutsames Metalloenzym. [(TpPh,Me)Zn(mbt)] (TpPh,Me=Hydrotris(3,5-phenylmethylpyrazolyl)borat, mbt=2-Methoxybenzolthiol) wurde als Modell (grün, siehe Bild) für die Konformation eines bekannten Inhibitors am aktiven Zentrum des Enzyms verwendet.

Co-reporter:Seth M Cohen, Sara R Halper
Inorganica Chimica Acta 2002 Volume 341() pp:12-16
Publication Date(Web):10 December 2002
DOI:10.1016/S0020-1693(02)01176-3
Dipyrromethenes (dipyrrins) are attractive ligands for forming supramolecular assemblies due to the stability, crystallinity, and spectroscopic properties of their metal complexes. Herein we report the synthesis, structure, spectroscopy, and electrochemistry of two dipyrrin iron(III) complexes. High-quality structural data of both complexes, Fe(dipyrrin)3 and Fe(dipyrrinCO2CH3)3, have been obtained by X-ray crystallography. The UV–Vis absorption spectrum of both complexes has been examined and cyclic voltammetry experiments have been performed on the complexes to evaluate the iron(III/II) couples. These represent the first structures of iron–dipyrrin complexes, as well as the first electrochemical studies of any meso-substituted dipyrrin transition metal complexes.The metal complexes Fe(dipyrrin)3 and Fe(dipyrrinCO2CH3)3 (dipyrrin=phenyldipyrrin, dipyrrinCO2CH3=4-methyoxycarbonylphenyldipyrrin), have been synthesized and characterized by X-ray crystallography, UV–Vis spectroscopy, and cyclic voltammetry. The neutral complexes are easy to prepare and can be purified using conventional flash chromatography. These compounds are of interest as building blocks for supramolecular materials.
Co-reporter:David T Puerta, Seth M Cohen
Inorganica Chimica Acta 2002 Volume 337() pp:459-462
Publication Date(Web):26 September 2002
DOI:10.1016/S0020-1693(02)00994-5
A dinuclear zinc(II) complex has been isolated from the reaction of Zn(ClO4)2 with TpMe,Ph (TpMe,Ph=hydrotris(5,3-methylphenylpyrazolyl)borate). We have characterized this species by a high quality X-ray crystal structure (R1=3.83%), and found it to contain a H3O2 bridge. We discuss the relevance of this structure in terms of hydrolytic zinc enzymes that utilize hydrogen-bond stabilized water nucleophiles to perform peptide bond cleavage.The dinuclear zinc(II) complex [(TpMe,Ph)2Zn2(H3O2)]ClO4 (TpMe,Ph=hydrotris(5,3-methylphenylpyrazolyl)borate) has been characterized by a high quality X-ray crystal structure and was found to contain a H3O2 bridge. The bridging of the H3O2 unit may describe the nucleophile in hydrolytic zinc enzymes that utilize hydrogen-bond stabilized water molecules to perform polypeptide hydrolysis.
Co-reporter:Jennifer A. Jacobsen, Jody L. Major Jourden, Melissa T. Miller, Seth M. Cohen
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research (January 2010) Volume 1803(Issue 1) pp:72-94
Publication Date(Web):January 2010
DOI:10.1016/j.bbamcr.2009.08.006
Co-reporter:Honghan Fei; Matthew D. Sampson; Yeob Lee; Clifford P. Kubiak
Inorganic Chemistry () pp:
Publication Date(Web):July 2, 2015
DOI:10.1021/acs.inorgchem.5b00752
A manganese bipyridine complex, Mn(bpydc)(CO)3Br (bpydc = 5,5′-dicarboxylate-2,2′-bipyridine), has been incorporated into a highly robust Zr(IV)-based metal–organic framework (MOF) for use as a CO2 reduction photocatalyst. In conjunction with [Ru(dmb)3]2+ (dmb = 4,4′-dimethyl-2,2′-bipyridine) as a photosensitizer and 1-benzyl-1,4-dihydronicotinamide (BNAH) as a sacrificial reductant, Mn-incorporated MOFs efficiently catalyze CO2 reduction to formate in DMF/triethanolamine under visible-light irradiation. The photochemical performance of the Mn-incorporated MOF reached a turnover number of approximately 110 in 18 h, exceeding that of the homogeneous reference systems. The increased activity of the MOF-incorporated Mn catalyst is ascribed to the struts of the framework providing isolated active sites, which stabilize the catalyst and inhibit dimerization of the singly reduced Mn complex. The MOF catalyst largely retained its crystallinity throughout prolonged catalysis and was successfully reused over several catalytic runs.
Co-reporter:Sara R. Halper, Jay R. Stork and Seth M. Cohen
Dalton Transactions 2007(Issue 10) pp:NaN1074-1074
Publication Date(Web):2007/02/08
DOI:10.1039/B615801C
Asymmetric α-substituted dipyrrins have been synthesized and characterized. The compounds were formed by a metal mediated reaction involving a single alkoxy group substituted into the α-position of an α,β-unsubstituted dipyrrin. An α-methoxy dipyrrin, 5-(4-cyanophenyl)-1-methoxydipyrrin (α-OMe-4-cydpm), was prepared from 5-(4-cyanophenyl)-4,6-dipyrromethane. Methoxy, ethoxy, and propoxy derivatives (α-OMe-4-mecdpm, α-OEt-4-mecdpm, α-OPr-4-mecdpm) of 5-(4-methoxycarbonylphenyl)-4,6-dipyrromethane have also been prepared. A homoleptic, bis(1-methoxy)dipyrrinato zinc(II) complex, [Zn(α-OMe-4-mecdpm)2], has been synthesized, as has a heteroleptic cobalt(III) complex with one α-OMe-4-cydpm ligand and two unsubstituted 5-(4-cyanophenyl)dipyrrin (4-cydpm) ligands ([Co(α-OMe-4-cydpm)(4-cydpm)2]). The rotational barrier of the meso-aryl substituent of [Zn(α-OMe-4-mecdpm)2] was found to be 17.3 kcal mol−1 by variable-temperature NMR spectroscopy. The compounds α-OMe-4-cydpm and [Zn(α-OMe-4-mecdpm)2] have also been characterized by X-ray diffraction. The formation of the new dipyrrin derivatives is shown to be general and can be performed on dipyrrins with various meso-aryl substitutents, with a variety of alcohols, and can be promoted by several metal salts.
Co-reporter:Jennifer A. Jacobsen, Jay R. Stork, Douglas Magde and Seth M. Cohen
Dalton Transactions 2010 - vol. 39(Issue 3) pp:NaN962-962
Publication Date(Web):2009/11/27
DOI:10.1039/B921772J
Boron difluoride adducts of diamidodipyrromethenes have been synthesized and characterized. The compounds represent a new group of the BODIPY family of fluorescent dyes. X-ray crystallography and solution 19F NMR experiments show that a persistent hydrogen bond is formed between the boron-bound fluoride groups and the peripheral amide substituents. The modular synthesis of these compounds and their robust photophysical properties suggest that they may be useful compounds for materials and biological photochemical applications.
Co-reporter:Alisa Tanakit, Matthieu Rouffet, David P. Martin and Seth M. Cohen
Dalton Transactions 2012 - vol. 41(Issue 21) pp:NaN6515-6515
Publication Date(Web):2012/03/12
DOI:10.1039/C2DT12373H
Matrix metalloproteinase inhibitors (MMPi) utilize zinc-binding groups (ZBGs) to chelate the catalytic Zn(II) ion resulting in enzyme inhibition. Adapting findings from the literature of Zn(II) ion sensors, we previously reported chelating sulfonamide inhibitors of MMP-2, some of which showed excellent selectivity over other gelatinases (MMP-9). Herein, we greatly expand our investigation of chelating sulfonamides as MMP inhibitors (MMPi) with the synthesis and screening of several new libraries consisting of 2-phenyl-7-sulfonamidobenzimidazole, 2-phenyl-7-sulfonamidobenzoxazole, 7-sulfonamidobenzimidazole, 7-sulfonamidobenzoxazole, and 2-(2-sulfonamidophenyl)-quinoline ZBG derivatives. A novel microwave irradiation synthetic procedure was utilized to rapidly and efficiently prepare these molecules. To better understand the coordination chemistry underlying these ZBGs, crystal structures of representative molecules with several first row transition metals were determined and differences in coordination preferences were considered. Surprisingly, only compounds with the 2-phenyl-7-sulfonamidobenzimidazole ZBG showed inhibition of MMP-2, suggesting that the specific structure of the ZBG can have a pronounced effect of inhibitory activity.
Co-reporter:Kristine K. Tanabe and Seth M. Cohen
Chemical Society Reviews 2011 - vol. 40(Issue 2) pp:NaN519-519
Publication Date(Web):2010/11/23
DOI:10.1039/C0CS00031K
Metal–organic frameworks (MOFs) are an important class of hybrid inorganic–organic materials. In this tutorial review, a progress report on the postsynthetic modification (PSM) of MOFs is provided. PSM refers to the chemical modification of the MOF lattice in a heterogeneous fashion. This powerful synthetic approach has grown in popularity and resulted in a number of advances in the functionalization and application of MOFs. The use of PSM to develop MOFs with improved gas sorption, catalytic activity, bioactivity, and more robust physical properties is discussed. The results reported to date clearly show that PSM is an important approach for the development and advancement of these hybrid solids.
Co-reporter:Sergio Ayala, Zhenjie Zhang and Seth M. Cohen
Chemical Communications 2017 - vol. 53(Issue 21) pp:NaN3061-3061
Publication Date(Web):2017/02/21
DOI:10.1039/C6CC10225E
The first polymer–MOF hybrid material (polyMOF) with a UiO-66 architecture is reported, prepared from polymers with varying alkyl spacers, molecular weights, and dispersities. With appropriate spacing, mesoporous UiO-66 polyMOF can be obtained having an uncommon, interlaced crystal morphology, suggesting that polyMOFs can be used to generate MOF materials with hierarchical architectures.
Co-reporter:Jessica C. Moreton, Michael S. Denny and Seth M. Cohen
Chemical Communications 2016 - vol. 52(Issue 100) pp:NaN14379-14379
Publication Date(Web):2016/11/21
DOI:10.1039/C6CC07329H
A series of styrene/butadiene polymers were combined with up to 90 wt% UiO-66 to form mixed-matrix membranes with varying physical properties. Notably, polystyrene-block-polybutadiene (SBS) membranes retained much of the processability and flexibility of the native polymer component and the porosity, chemical tunability, and adsorption of the native MOF.
Co-reporter:Kevin B. Daniel, Cassandra E. Callmann, Nathan C. Gianneschi and Seth M. Cohen
Chemical Communications 2016 - vol. 52(Issue 10) pp:NaN2128-2128
Publication Date(Web):2015/12/15
DOI:10.1039/C5CC09164K
Micellar nanoparticles were designed to be responsive to matrix metalloproteinases (MMPs) and reactive oxygen species (ROS), each of which is upregulated in the pathology of inflammatory diseases. The amphiphilic polymer-based nanoparticle system consists of a hydrophilic shell responsible for particle morphology change and aggregation, together with a hydrophobic block designed to release cargo in the presence of ROS.
Co-reporter:Honghan Fei, Sonja Pullen, Andreas Wagner, Sascha Ott and Seth M. Cohen
Chemical Communications 2015 - vol. 51(Issue 1) pp:NaN69-69
Publication Date(Web):2014/10/23
DOI:10.1039/C4CC08218D
A facile and efficient fabrication approach for homogeneous, crack-free UiO-66 films with exceptionally high crystallinity and tunable thickness on a transparent and conductive glass substrate is reported. Two functionalized species, a catechol ligand and a Fe2 complex with structural resemblance to the active site of [FeFe] hydrogenase, were introduced into the MOF films via a postsynthetic exchange. Voltammetric studies show the [FeFe] complex in the thinner UiO-66 films (2–5 μm) can be reduced electrochemically.
Co-reporter:Phuong V. Dau and Seth M. Cohen
Chemical Communications 2014 - vol. 50(Issue 81) pp:NaN12157-12157
Publication Date(Web):2014/08/20
DOI:10.1039/C4CC05265J
Herein, we present the use of presynthetic and postsynthetic modification (PSM) approaches to regulate the structural organization of functional groups in the pores of isoreticular metal–organic frameworks (IRMOFs). It has been found that the structural ordering of aryl groups within the IRMOF pores results in hysteretic H2 sorption, while the same aryl groups introduced in a disordered manner displays reversible H2 sorption that is more typical of the IRMOF family.
Co-reporter:Xiaoping Zhang, Zhenjie Zhang, Jake Boissonnault and Seth M. Cohen
Chemical Communications 2016 - vol. 52(Issue 55) pp:NaN8588-8588
Publication Date(Web):2016/06/14
DOI:10.1039/C6CC03190K
Herein, we utilize a new, squaramide-based ligand, combined with a postsynthetic exchange (PSE) synthetic approach to prepare a series of Cu(II)–squaramide MOFs that are active catalysts for the Friedel–Crafts reaction.
Co-reporter:Yeob Lee, Sangjun Kim, Jeung Ku Kang and Seth M. Cohen
Chemical Communications 2015 - vol. 51(Issue 26) pp:NaN5738-5738
Publication Date(Web):2015/02/18
DOI:10.1039/C5CC00686D
Postsynthetic exchange (PSE) of Ti(IV) into a Zr(IV)-based MOF enabled photocatalytic CO2 reduction to HCOOH under visible light irradiation with the aid of BNAH and TEOA. Use of a mixed-ligand strategy enhanced the photocatalytic activity of the MOF by introducing new energy levels in the band structure of the MOF.
Co-reporter:Jessica L. Fullagar, Amanda L. Garner, Anjali K. Struss, Joshua A. Day, David P. Martin, Jing Yu, Xiaoqing Cai, Kim D. Janda and Seth M. Cohen
Chemical Communications 2013 - vol. 49(Issue 31) pp:NaN3199-3199
Publication Date(Web):2013/03/06
DOI:10.1039/C3CC41191E
Tropolone emerged from the screening of a chelator fragment library (CFL) as an inhibitor of the Zn2+-dependent virulence factor, Pseudomonas aeruginosa elastase (LasB). Based on this initial hit, a series of substituted tropolone-based LasB inhibitors was prepared, and a compound displaying potent activity in vitro and in a bacterial swarming assay was identified. Importantly, this inhibitor was found to be specific for LasB over other metalloenzymes, validating the usage of tropolone as a viable scaffold for identifying first-in-class LasB inhibitors.
Co-reporter:Corinne A. Allen, Jake A. Boissonnault, Jordi Cirera, Ryan Gulland, Francesco Paesani and Seth M. Cohen
Chemical Communications 2013 - vol. 49(Issue 31) pp:NaN3202-3202
Publication Date(Web):2013/03/06
DOI:10.1039/C3CC40635K
Herein we report the synthesis of canonical isoreticular metal–organic frameworks (IRMOFs) containing interligand crosslinks. Chemically crosslinking two molecules of 2-amino-1,4-benzene dicarboxylic acid (NH2-BDC) gives ligands that readily form IRMOF-1 analogs, producing crosslinked MOFs that may be designed to have novel properties.
Co-reporter:Christian Perez, Jean-Philippe Monserrat, Yao Chen and Seth M. Cohen
Chemical Communications 2015 - vol. 51(Issue 33) pp:NaN7119-7119
Publication Date(Web):2015/03/20
DOI:10.1039/C4CC09921D
A novel approach for developing prodrugs based on masked carboxylic acids is described. Rather than using conventional esterase-based activation, thiazolidinone protecting groups have been identified that can reveal carboxylic acid groups upon activation by hydrogen peroxide. This may prove valuable in the continuing development of prodrug strategies that rely on reactive oxygen species (ROS) as a trigger.
Co-reporter:Xiao Yu and Seth M. Cohen
Chemical Communications 2015 - vol. 51(Issue 48) pp:NaN9883-9883
Publication Date(Web):2015/05/15
DOI:10.1039/C5CC01697E
A photocatalytic Ru complex was incorporated into a Zr(IV)-based metal–organic framework (MOF) via postsynthetic methods. The resulting UiO-67-Ru(bpy)3 shows efficient and recyclable catalytic activity for the aerobic oxidation of arylboronic acids under near-UV and visible light irradiation.
Co-reporter:Yeob Lee, Sangjun Kim, Honghan Fei, Jeung Ku Kang and Seth M. Cohen
Chemical Communications 2015 - vol. 51(Issue 92) pp:NaN16552-16552
Publication Date(Web):2015/09/24
DOI:10.1039/C5CC04506A
Metal–organic frameworks (MOFs) with isolated metal-monocatecholato groups have been synthesized via postsynthetic exchange (PSE) for CO2 reduction photocatalyst under visible light irradiation in the presence of 1-benzyl-1,4-dihydronicotinamide and triethanolamine. The Cr-monocatecholato species are more efficient than the Ga-monocatecholato species.
Co-reporter:Honghan Fei and Seth M. Cohen
Chemical Communications 2014 - vol. 50(Issue 37) pp:NaN4812-4812
Publication Date(Web):2014/03/21
DOI:10.1039/C4CC01607F
We report two synthetic approaches to prepare a highly crystalline Zr(IV)-based metal–organic framework (MOF) containing open 2,2′-bipyridine (bpy) chelating sites. The resulting UiO-67-bpydc readily forms complexes with PdCl2 to produce a MOF that exhibits efficient and recyclable catalytic activity for the Suzuki–Miyaura cross-coupling reaction.
Co-reporter:Marco Taddei, Ferdinando Costantino, Riccardo Vivani, Stefano Sabatini, Sang-Ho Lim and Seth M. Cohen
Chemical Communications 2014 - vol. 50(Issue 43) pp:NaN5740-5740
Publication Date(Web):2014/04/03
DOI:10.1039/C4CC01253D
1,3,5-Tris(4-phosphonophenyl)benzene was synthesized via a microwave heating assisted route and was subsequently used for the preparation of a new zirconium phosphonate with honeycomb-like structure displaying remarkable thermal stability and hydrolysis resistance.
Co-reporter:David P. Martin and Seth M. Cohen
Chemical Communications 2012 - vol. 48(Issue 43) pp:NaN5261-5261
Publication Date(Web):2012/04/11
DOI:10.1039/C2CC32013D
A series of hydroxybenzoic acid derivatives have shown inhibitory activity against carbonic anhydrase (CA). X-ray crystallography shows that these molecules inhibit not by binding the active site metal ion but by strong hydrogen bonding to the metal-bound water nucleophile. The binding mode observed for these molecules is distinct when compared to other non-metal-binding CA inhibitors.
Co-reporter:Phuong V. Dau and Seth M. Cohen
Chemical Communications 2013 - vol. 49(Issue 55) pp:NaN6130-6130
Publication Date(Web):2013/05/29
DOI:10.1039/C3CC42119H
Metal–organic frameworks (MOFs) functionalized via Ir(I) cyclometalation are shown to be effective as heterogeneous catalysts for the allylic N-alkylation of various amines. The MOF catalysts are one of the first and most effective MOF-based heterogeneous organometallic catalysts for the direct formation of C–N bonds. In addition, these MOFs represent a rare, stable and reusable, class of reactive Ir catalysts.
Co-reporter:Min Kim, John F. Cahill, Kimberly A. Prather and Seth M. Cohen
Chemical Communications 2011 - vol. 47(Issue 27) pp:NaN7631-7631
Publication Date(Web):2011/06/09
DOI:10.1039/C1CC12101D
A series of mixed, bifunctional metal–organic frameworks were synthesized and subsequent postsynthetic modification was demonstrated on the two, orthogonal functional sites. The use of differentially ‘tagged’ ligands combined with postsynthetic modification provides a facile route to a large number of functionally diverse materials.
Co-reporter:Phuong V. Dau, Kristine K. Tanabe and Seth M. Cohen
Chemical Communications 2012 - vol. 48(Issue 75) pp:NaN9372-9372
Publication Date(Web):2012/08/08
DOI:10.1039/C2CC34938H
Functionalization of the ligand 1,3,5-tris(4-carboxyphenyl)benzene (H3BTB) has been realized with methoxy (H3BTB–[OMe]3) and hydroxy (H3BTB–[OH]3) groups. Combining H3BTB–[OMe]3 and Zn(II) results in the formation of the first isostructural, functionalized analogue of MOF-177 (MOF-177–OMe), while the combination of H3BTB–[OH]3 and Zn(II) generates a rare, interpenetrated pcu-e framework.
Co-reporter:Jody L. Major Jourden and Seth M. Cohen
Chemical Communications 2010 - vol. 46(Issue 8) pp:NaN1243-1243
Publication Date(Web):2010/01/18
DOI:10.1039/B923302D
Matrix metalloproteinase inhibitors (MMPi) possessing a glucose protecting group on the zinc-binding group (ZBG) show a dramatic increase in inhibitory activity upon cleavage by β-glucosidase.
Co-reporter:Sergio J. Garibay and Seth M. Cohen
Chemical Communications 2010 - vol. 46(Issue 41) pp:NaN7702-7702
Publication Date(Web):2010/09/27
DOI:10.1039/C0CC02990D
Amino, bromo, nitro, and naphthalene functionalized UiO-66 metal–organic frameworks have been synthesized through reticular chemistry. UiO-66–NH2 is shown to be suitable for postsynthetic modification with a variety of anhydrides to generate new, functionalized frameworks.
Co-reporter:Emily Dugan, Zhenqiang Wang, Marilyn Okamura, Annette Medina and Seth M. Cohen
Chemical Communications 2008(Issue 29) pp:
Publication Date(Web):
DOI:10.1039/B806150E
Co-reporter:Sergio J. Garibay, Jay R. Stork, Zhenqiang Wang, Seth M. Cohen and Shane G. Telfer
Chemical Communications 2007(Issue 46) pp:NaN4883-4883
Publication Date(Web):2007/09/25
DOI:10.1039/B712118K
Carboxylate-decorated tris(dipyrrinato) cobalt(III) complexes have been used to construct 2-D and 3-D metal–organic frameworks with infinite and trinuclear zinc secondary-building units.
Co-reporter:Jared B. DeCoste, Michael S. Denny, Jr., Gregory W. Peterson, John J. Mahle and Seth M. Cohen
Chemical Science (2010-Present) 2016 - vol. 7(Issue 4) pp:NaN2716-2716
Publication Date(Web):2016/01/13
DOI:10.1039/C5SC04368A
Metal–organic frameworks (MOFs) in their free powder form have exhibited superior capacities for many gases when compared to other materials, due to their tailorable functionality and high surface areas. Specifically, the MOF HKUST-1 binds small Lewis bases, such as ammonia, with its coordinatively unsaturated copper sites. We describe here the use of HKUST-1 in mixed-matrix membranes (MMMs) prepared from polyvinylidene difluoride (PVDF) for the removal of ammonia gas. These MMMs exhibit ammonia capacities similar to their hypothetical capacities based on the weight percent of HKUST-1 in each MMM. HKUST-1 in its powder form is unstable toward humid conditions; however, upon exposure to humid environments for prolonged periods of time, the HKUST-1 MMMs exhibit outstanding structural stability, and maintain their ammonia capacity. Overall, this study has achieved all of the critical and combined elements for real-world applications of MOFs: high MOF loadings, fully accessible MOF surfaces, enhanced MOF stabilization, recyclability, mechanical stability, and processability. This study is a critical step in advancing MOFs to a stable, usable, and enabling technology.
Co-reporter:Phuong V. Dau, Min Kim and Seth M. Cohen
Chemical Science (2010-Present) 2013 - vol. 4(Issue 2) pp:NaN605-605
Publication Date(Web):2012/10/03
DOI:10.1039/C2SC21289G
Although porous materials, including metal–organic frameworks (MOFs), can be functionalized using heterogeneous reactions (solution–solid, gas–solid), there are no reports that modify chemically identical sites in a spatially selective, periodic fashion. Herein, the cyclometalation of two non-interpenetrated MOFs and an interpenetrated MOF in the solid state is reported using [Ir(COD)(OCH3)]2 and [Rh(COD)(Cl)]2 (COD = 1,5-cyclooctadiene). Incredibly, the cyclometalation of the interpenetrated MOF occurs only on ligands that lie along, one crystallographic axis, providing an unprecedented example of site-selective postsynthetic modification (PSM). This represents a degree of control on the functionalization of a porous, material that has not been otherwise realized, and is achieved in part because of the crystalline, periodic nature of MOFs. Furthermore, it was found that the degree of cyclometalation, increases the sorption capacity of the interpenetrated MOF.
Co-reporter:Min Kim, John F. Cahill, Yongxuan Su, Kimberly A. Prather and Seth M. Cohen
Chemical Science (2010-Present) 2012 - vol. 3(Issue 1) pp:NaN130-130
Publication Date(Web):2011/09/13
DOI:10.1039/C1SC00394A
Herein, we report that the exchange of ligands from an intact metal–organic framework (MOF) can be exploited as a means to introduce functionalized ligands into MOFs under mild conditions. It is shown that ligand exchange can occur with ‘inert’ Zr(IV)-based UiO-66 MOFs in a solvent dependent manner. We call this process postsynthetic exchange (PSE) and show that it provides access to MOFs that are not readily prepared in high quality by solvothermal methods. It was found that ligand exchange can occur between UiO-66 MOFs as monitored by aerosol time-of-flight mass spectrometry (ATOFMS). ATOFMS was used to analyze the chemical composition of microcrystalline MOFs on the single particle level, providing information not available through bulk analysis. PSE is an important postsynthetic approach to the modification of MOFs, and the ligand exchange revealed by ATOFMS requires a re-evaluation of the assumed ‘stability’ of even the most robust MOFs.
Co-reporter:Seth M. Cohen
Chemical Science (2010-Present) 2010 - vol. 1(Issue 1) pp:NaN36-36
Publication Date(Web):2010/05/12
DOI:10.1039/C0SC00127A
The postsynthetic modification (PSM) of metal–organic frameworks (MOFs) has grown substantially in the past few years. In this minireview, recent progress in the area of PSM is highlighted, with an emphasis on several recent advancements. The scope and limitations of PSM are described and future prospects are discussed.
Co-reporter:Teng-Hao Chen, Andreas Schneemann, Roland A. Fischer and Seth M. Cohen
Dalton Transactions 2016 - vol. 45(Issue 7) pp:NaN3069-3069
Publication Date(Web):2016/01/04
DOI:10.1039/C5DT04316F
A series of unprecedented crown ether- and thiacrown ether-derivatized benzene dicarboxylic acid (H2bdc) ligands has been synthesized and incorporated into the prototypical isoreticular metal–organic framework (IRMOF) and UiO-66 materials. In the case of UiO-66, only MOFs comprised from a mixed-ligand composition, requiring both unsubstituted bdc and crown ether containing ligands, could be prepared. These are among the few ligand derivatives, and resulting MOFs, that incorporate a macrocyclic group directly on the bdc ligand, providing a new, modular platform for exploring new supramolecular and coordination chemistry within MOFs.
Co-reporter:Zhenqiang Wang and Seth M. Cohen
Chemical Society Reviews 2009 - vol. 38(Issue 5) pp:NaN1329-1329
Publication Date(Web):2009/01/20
DOI:10.1039/B802258P
The modification of metal–organic frameworks (MOFs) in a postsynthetic scheme is discussed in this critical review. In this approach, the MOF is assembled and then modified with chemical reagents with preservation of the lattice structure. Recent findings show amide couplings, isocyanate condensations, ‘click’ chemistry, and other reactions are suitable for postsynthetic modification (PSM). In addition, a number of MOFs, from IRMOF-3 to ZIF-90, are amenable to PSM. The generality of PSM, in both scope of chemical reactions and range of suitable MOFs, clearly indicates that the approach is broadly applicable. Indeed, the rapid increase in reports on PSM demonstrates this methodology will play an increasingly important role in the development of MOFs for the foreseeable future (117 references).
Co-reporter:Phuong V. Dau, Luis R. Polanco and Seth M. Cohen
Dalton Transactions 2013 - vol. 42(Issue 11) pp:NaN4018-4018
Publication Date(Web):2013/01/08
DOI:10.1039/C3DT32588A
The synthesis and physical properties of dioxole functionalized metal–organic frameworks (MOFs) are reported. Combination of benzo[d][1,3]dioxole-4,7-dicarboxylic acid (dioxole-BDC) and Zn(II) under solvothermal conditions yields either an isoreticular metal–organic framework analog (IRMOF-1-dioxole) or a new MOF material (MOF-1-dioxole). With the addition of a co-ligand, namely 4,4′-bipyridine, a mixed-linker Zn(II)-paddlewheel MOF (BMOF-2-dioxole) is obtained. The structure of all three MOFs has been determined by single-crystal X-ray diffraction studies. MOF-1-dioxole reveals that the dioxole group binds to the Zn(II) ions, while there is no such binding in IRMOF-1-dioxole or BMOF-2-dioxole, hence preserving the parent topology of these frameworks. Thermal gravimetric analysis and gas sorption studies reveal quite different physical properties for each of these functionalized MOFs.
Co-reporter:Min Kim, Jake A. Boissonnault, Corinne A. Allen, Phuong V. Dau and Seth M. Cohen
Dalton Transactions 2012 - vol. 41(Issue 20) pp:NaN6282-6282
Publication Date(Web):2012/04/11
DOI:10.1039/C2DT30120B
A series of highly porous University of Michigan Crystalline Material (UMCM-1) type Zn-based metal–organic frameworks (MOFs) were synthesized from mono- and bi-functionalized benzenedicarboxylate (BDC) ligands. In total, 16 new functionalized UMCM-1 derivatives were obtained by a combination of pre- and postsynthetic functionalization. Through postsynthetic modification (PSM), amino–halo bifunctional MOFs were converted into amide–halo materials via solid-state acylation reactions. A series of bifunctional MOFs containing Cl, Br, and I groups revealed that PSM conversion is not affected by the size of the halide, only by the steric bulk of the reagent used in these solid-state organic transformations.
Co-reporter:Corinne A. Allen and Seth M. Cohen
Journal of Materials Chemistry A 2012 - vol. 22(Issue 20) pp:NaN10194-10194
Publication Date(Web):2011/12/14
DOI:10.1039/C2JM15183A
A series of isoreticular metal–organic frameworks (IRMOFs) have been prepared using two different ligands protected with photolabile groups: 2-((2-nitrobenzyl)oxy)terephthalic acid (L1) and 2-((4,5-dimethoxy-2-nitrobenzyl)oxy)terephthalic acid (L2). Irradiation at either 365 or 400 nm results in postsynthetic deprotection (PSD), removing the nitrobenzyl protecting groups from these ligands and generating phenolic groups in the pores of the MOF (55–83% yield). The photochemical behaviour of the ligands in the IRMOFs was not wholly predicted by their reactivity in solution (i.e. free ligand). A mixed ligand approach was used, by combining L1 or L2 with NH2-BDC to produce mixed ligand IRMOFs with 30–40% incorporation of the NH2-BDC. These mixed-ligand IRMOFs were then subjected to both postsynthetic modification (PSM) and PSD. Two routes to achieve both PSM and PSD were explored: PSM followed by PSD (route 1) and PSD followed by PSM (route 2). When using 365 nm light for the PSD reaction, route 1 was superior due to absorption of NH2-BDC at 365 nm. Irradiation at 400 nm gave fewer differences between route 1 and route 2, but the PSD reaction was less efficient (30–40%) for all systems. By combining PSD and PSM, MOFs with highly functionalized pores can be obtained through a combination of pre- and postsynthetic methods.
Co-reporter:Matthieu Rouffet and Seth M. Cohen
Dalton Transactions 2011 - vol. 40(Issue 14) pp:NaN3454-3454
Publication Date(Web):2011/02/02
DOI:10.1039/C0DT01743D
Numerous metalloproteins are important therapeutic targets that are gaining increased attention in the medicinal and bioinorganic chemistry communities. This Perspective article describes some emerging trends and recent findings in the area of metalloprotein inhibitor discovery and development. In particular, increasing recognition of the importance of the metal–ligand interactions in these systems calls for more input and consideration from the bioinorganic community to address questions traditionally confined to the medicinal chemistry community.
4H-PYRAN-4-ONE, 5-HYDROXY-2-(PHENOXYMETHYL)-
Phenol,5-(aminomethyl)-2-methoxy-
Ethane, 1,1'-thiobis[2-[(2-bromoethyl)thio]-
4H-Pyran-4-one, 2-(chloromethyl)-5-(phenylmethoxy)-
4H-Pyran-2-carboxylic acid, 3-hydroxy-4-oxo-
2,3-dihydro-1-(2-propen-1-yl)-1H-Indole
2(1H)-Pyridinethione, 1-hydroxy-4,6-dimethyl-
4H-1-BENZOPYRAN-4-THIONE, 3-HYDROXY-2-PHENYL-