Peter J. Halling

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Organization: University of Strathclyde , England
Department: Department of Pure and Applied Chemistry
Title: (PhD)

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Co-reporter:Lauren Bayne, Rein V. Ulijn and Peter J. Halling  
Chemical Society Reviews 2013 vol. 42(Issue 23) pp:9000-9010
Publication Date(Web):13 Sep 2013
DOI:10.1039/C3CS60270B
Porous materials are widely employed as supports in the immobilisation of enzymes. Traditionally macroporous materials with pore diameters >50 nm were believed to be the most suitable support material, ensuring no spatial restrictions upon enzyme molecules entering such large pores. In recent years however, there has been growing emphasis in the use of mesoporous supports with pore diameters ranging between 2 and 50 nm. It is thought this smaller pore range may offer enhanced conformational stability to immobilised enzymes while not being so small as to restrict enzyme access. Despite their increasing popularity, many argue that mesoporous materials have not yet proven superior to traditional macroporous supports for enzyme immobilisation. Through the design and application of a unique confidence rating system we were able to accurately compare data and establish trends between pore characteristics and protein loading. By analysing published data (182 experiments in total) and extracting pore characteristics and protein loading values, we have described three categories of pore diameters in which correlations between pore characteristics and protein loading are noted. With pore diameters less than 10 nm we see a general decrease in protein loading as the enzymes find physical restrictions in accessing the high surface offered in this pore diameter range. At pore sizes greater than 100 nm, protein loading generally decreases due to a concomitant reduction in available surface area. In the pore range of 10–100 nm there it is expected to see a decrease in protein loading level with increasing pore diameter. In fact protein loading in this range remains largely constant, suggesting some degree of protein–protein interaction blocking pores and restricting access to the increasing surface area available at decreasing pore diameters. No trends were established between pore characteristics and retention of activity.
Co-reporter:Apostolos Alissandratos, Nina Baudendistel, Bernhard Hauer, Kai Baldenius, Sabine Flitsch and Peter Halling  
Chemical Communications 2011 vol. 47(Issue 2) pp:683-685
Publication Date(Web):22 Nov 2010
DOI:10.1039/C0CC02908D
The enzyme catalysed esterification of starch and fatty acids with terminal triple bonds is described. This material can be used as an acceptor for azide containing molecules, through azide/alkyne cycloaddition. The potential is illustrated by the production of fluorescently-labelled starch, and a biotinylated derivative which can bind streptavidin.
Co-reporter:Michele Cianci ; Bartlomiej Tomaszewski ; John R. Helliwell
Journal of the American Chemical Society 2010 Volume 132(Issue 7) pp:2293-2300
Publication Date(Web):January 25, 2010
DOI:10.1021/ja908703c
When enzymes are in low dielectric nonaqueous media, it would be expected that their charged groups would be more closely associated with counterions. There is evidence that these counterions may then affect enzymatic activity. Published crystal structures of proteins in organic solvents do not show increased numbers of associated counterions, and this might reflect the difficulty of distinguishing cations like Na+ from water molecules. In this paper, the placement of several Cs+ and Cl− ions in crystals of the serine protease subtilisin Carlsberg is presented. Ions are more readily identified crystallographically through their anomalous diffraction using softer X-rays. The protein conformation is very similar to that of the enzyme without CsCl in acetonitrile, both for the previously reported (1SCB) and our own newly determined model. No fewer than 11 defined sites for Cs+ cations and 8 Cl− anions are identified around the protein molecule, although most of these have partial occupancy and may represent nonspecific binding sites. Two Cs+ and two Cl− ions are close to the mouth of the active site cleft, where they may affect catalysis. In fact, cross-linked CsCl-treated subtilisin crystals transferred to acetonitrile show catalytic activity several fold higher than the reference crystals containing Na+. Presoaking with another large cation, choline, also increases the enzyme activity. The active site appears only minimally sterically perturbed by the ion presence around it, so alternative activation mechanisms can be suggested: an electrostatic redistribution and/or a larger hydration sphere that enhances the protein domain.
Co-reporter:Apostolos Alissandratos;Nina Baudendistel;Sabine L Flitsch
BMC Biotechnology 2010 Volume 10( Issue 1) pp:
Publication Date(Web):2010 December
DOI:10.1186/1472-6750-10-82
Natural polysaccharides such as starch are becoming increasingly interesting as renewable starting materials for the synthesis of biodegradable polymers using chemical or enzymatic methods. Given the complexity of polysaccharides, the analysis of reaction products is challenging.Esterification of starch with fatty acids has traditionally been monitored by saponification and back-titration, but in our experience this method is unreliable. Here we report a novel GC-based method for the fast and reliable quantitative determination of esterification. The method was used to monitor the enzymatic esterification of different starches with decanoic acid, using lipase from Thermomyces lanuginosus. The reaction showed a pronounced optimal water content of 1.25 mL per g starch, where a degree of substitution (DS) of 0.018 was obtained. Incomplete gelatinization probably accounts for lower conversion with less water.Lipase-catalysed esterification of starch is feasible in aqueous gel systems, but attention to analytical methods is important to obtain correct DS values.
Co-reporter:Zhen Yang, Xiu-Ju Liu, Chao Chen, Peter J. Halling
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2010 Volume 1804(Issue 4) pp:821-828
Publication Date(Web):April 2010
DOI:10.1016/j.bbapap.2009.12.005
We have studied the effects on alkaline phosphatase of adding high concentrations (normally 1.0 M) of simple salts. It is necessary to allow for significant effects of salts on the extinction coefficient of the reaction product, and on the apparent pH of the buffer. Both activity and stability of the enzyme correlate well with the Hofmeister series in terms of the salt's kosmotropic/chaotropic properties, which are assessed by the Jones–Dole viscosity B coefficients (B+ for cations and B− for anions). The catalytic activity or Vmax/Km of the enzyme showed a bell-shaped relationship with the (B− − B+) values of the salts present, being optimal with salts (such as NaCl, KCl, and KNO3) where the anion and cation have similar kosmotropic/chaotropic properties. This effect is believed to be enzyme-specific and relates to the impact of both cations and anions on the enzyme's surface pH, active site, and catalytic mechanism. Anions play a more predominant role than cations in affecting enzyme stability. The rate of irreversible thermal inactivation is strongly reduced by addition of kosmotropic anions like SO42− (half-life increased from 8 to 580 min at 60 °C). This effect is general and the mechanism probably involves the ability of the ions to affect the water solvation layer around the enzyme molecule and to interact with both the surface and internal structure of the enzyme.
Co-reporter:Peter J. Halling
Analytical Biochemistry 2009 Volume 387(Issue 1) pp:76-81
Publication Date(Web):1 April 2009
DOI:10.1016/j.ab.2009.01.006
The absorbance and circular dichroism (CD) of suspensions is lower than if the same amount of chromophore were uniformly distributed throughout the medium. Several mathematical treatments of this absorption flattening phenomenon have been presented using various assumptions and approximations. This article demonstrates an alternative simulation approach that allows relaxation of assumptions. On current desktop computers, the algorithm runs quickly with enough particles and light paths considered to get answers that are usually accurate to better than 3%. Results from the simulation agree with the most popular analytical model for 0.01 volume fraction of particles, showing that the extent of flattening depends mainly on the absorbance through a particle diameter. Unlike previous models, the simulation can show that flattening is significantly lower when volume fraction increases to 0.1 but is higher when the particles have a size distribution. The simulation can predict the slope of the nearly linear relationship between flattening of CD and the absorbance of the suspension. This provides a method to correct experimental CD data where volume fraction and particle size are known.
Co-reporter:Ashok Ganesan Dr.;Barry D. Moore Dr.;Sharon M. Kelly Dr.;Nicholas C. Price Dr.;Olaf J. Rolinski Dr.;David J. S. Birch Dr.;Ian R. Dunkin Dr. Dr.
ChemPhysChem 2009 Volume 10( Issue 9-10) pp:1492-1499
Publication Date(Web):
DOI:10.1002/cphc.200800759
Co-reporter:Joseph Deere, Rui F. De Oliveira, Bartłomiej Tomaszewski, Sarah Millar, Antonia Lalaouni, Laura F. Solares, Sabine L. Flitsch and Peter J. Halling
Langmuir 2008 Volume 24(Issue 20) pp:11762-11769
Publication Date(Web):September 26, 2008
DOI:10.1021/la801932f
The use of α-chymotrypsin to cleave covalently bound N-acetyl-l-tryptophan (Ac-Trp-OH) from the surfaces of aminopropylated controlled pore glass (CPG) and the polymer PEGA1900 was investigated. Oligoglycine spacer chains were used to present the covalently attached Ac-Trp-OH substrate to the aqueous enzyme. In the absence of the oligoglycine spacer chain, the rate of release was relatively slow, especially from the PEGA1900. These slow rates reflect the position of the amino group to which Ac-Trp-OH is covalently attached. On the glass there was a clear optimum with a chain of four glycine residues. For PEGA1900 there is no real apparent change beyond two glycine residues. The decline in rate beyond these optima are a possible result of changes in oligoglycine structure. Comparing different surface loadings of bound substrate the rate of release of Ac-Trp-OH from CPG with a pore diameter of 1200 Å was optimal when using 83% of the maximum that can be coupled, then fell again at higher loading. The rate of Ac-Trp-OH release from CPG was the same for surface coverages of 0.4 and 1.0. The introduction of permanent surface charges on CPG1200 exhibits a distinct influence on enzymatic cleavage with an increase in the rate of biocatalysis at the surface. Optimal presentation of covalently immobilized substrate on different supports by use of appropriate linkers leads to favorable biocatalysis from the support.
Co-reporter:Ashok Ganesan, Nicholas C. Price, Sharon M. Kelly, Inga Petry, Barry D. Moore, Peter J. Halling
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2006 Volume 1764(Issue 6) pp:1119-1125
Publication Date(Web):June 2006
DOI:10.1016/j.bbapap.2006.03.016
Immobilised enzymes are widely used in industry, but the reasons for loss of activity of such biocatalysts are usually not known. We have used circular dichroism (CD) to investigate the structure of one such system, i.e., subtilisin Carlsberg (SC) immobilised on silica gel particles (60 μm). A number of technical problems have to be overcome in order to obtain appropriate data from which conclusions can be drawn. A rotating cell holder has been developed to avoid sedimentation of the silica particles during the collection of spectra. By moving the cell holder as close as possible to the detector window, the effects of differential scattering can be minimised. However, the effects of absorption flattening limit the extent to which reliable quantitative information on secondary structure content can be obtained from far UV CD studies. We have used an empirical approach based on absorbance units derived from the high-tension voltage to correct for absorption flattening effects. After applying the correction there was satisfactory agreement with the solution spectra. Comparison of the fresh and used (inactive) SC-silica gel spectra in organic media reveals substantial change in the secondary structure. Additional evidence for loss of native conformation is provided by the significant decrease in the near UV CD spectrum. These results for the first time clearly demonstrate the origin of enzyme instability in the immobilised state.
Co-reporter:Lars Veum;Liisa T. Kanerva;Peter J. Halling;Thomas Maschmeyer;Ulf Hanefeld
Advanced Synthesis & Catalysis 2005 Volume 347(Issue 7-8) pp:
Publication Date(Web):1 JUN 2005
DOI:10.1002/adsc.200505031

The base- and lipase-catalysed enantioselective synthesis of cyanohydrin esters was investigated, and the problem of previously reported low yields due to residual water in the reaction mixture was addressed. When the lipase was immobilised on Celite R-633 as a carrier, both the enantioselectivity and the reaction times for this dynamic kinetic resolution were improved, thus enabling a highly enantioselective synthesis of aromatic and heteroaromatic cyanohydrin acetates.

Co-reporter:Neil Harper Dr.;Mark Dolman Dr.;Barry D. Moore Dr.
Chemistry - A European Journal 2000 Volume 6(Issue 11) pp:
Publication Date(Web):14 JUN 2000
DOI:10.1002/1521-3765(20000602)6:11<1923::AID-CHEM1923>3.0.CO;2-T

Although great care is generally taken to buffer aqueous enzyme reactions, active control of acid-base conditions for biocatalysis in low-water media is rarely considered. Here we describe a new class of solid-state acid-base buffers suitable for use in organic media. The buffers, composed of a zwitterion and its sodium salt, are able to set and maintain the ionisation state of an enzyme by the exchange of H+ and Na+ ions. Surprisingly, equilibrium is established between the different solid components quickly enough to provide a practical means of controlling acid-base conditions during biocatalysed reactions. We developed an organosoluble chromoionophore indicator to screen the behaviour of possible buffer pairs and quantify their relative H+/Na+ exchange potential. The transesterification activity of an immobilised protease, subtilisin Carlsberg, was measured in toluene in the presence of a range of buffers. The large observed difference in rates showed good correlation with that expected from the measured exchange potentials. The maximum water activities accessible without formation of hydrates or solutions of the buffers are reported here. The indicator was also used to monitor, for the first time in situ, changes in the acid-base conditions of an enzyme-catalysed transesterification reaction in toluene. We found that even very minor amounts of an acidic by-product of hydrolysis were leading to protonation of the enzyme, resulting in rapid loss of activity. Addition of solid-state buffer was able to prevent this process, shortening reaction times and improving yields. Solid-state buffers offer a general and inexpensive way of precisely controlling acid-base conditions in organic solvents and thus also have potential applications outside of biocatalysis.

Co-reporter:Peter Halling
Perspectives in Science (December 2016) Volume 9() pp:67-69
Publication Date(Web):1 December 2016
DOI:10.1016/j.pisc.2015.11.057
Co-reporter:H. Yue, P. Halling, H. Yu
IFAC Proceedings Volumes (2013) Volume 46(Issue 31) pp:327-332
Publication Date(Web):1 January 2013
DOI:10.3182/20131216-3-IN-2044.00034
A mathematical model has been developed for an enzymatic process with kinetically controlled synthesis. Model reduction and detailed system analysis have been undertaken to examine the main properties of this enzyme reaction system. Optimal experimental design (OED) is developed to obtain the experimental conditions that will generate the most informative measurement data for parameter estimation. Both single-input and multiple-inputs optimisation strategies have been investigated to determine the best intensity levels of control inputs. The results demonstrate that parameter estimation quality can be improved through proper model-based experimental design.
Co-reporter:Apostolos Alissandratos, Nina Baudendistel, Bernhard Hauer, Kai Baldenius, Sabine Flitsch and Peter Halling
Chemical Communications 2011 - vol. 47(Issue 2) pp:NaN685-685
Publication Date(Web):2010/11/22
DOI:10.1039/C0CC02908D
The enzyme catalysed esterification of starch and fatty acids with terminal triple bonds is described. This material can be used as an acceptor for azide containing molecules, through azide/alkyne cycloaddition. The potential is illustrated by the production of fluorescently-labelled starch, and a biotinylated derivative which can bind streptavidin.
Co-reporter:Lauren Bayne, Rein V. Ulijn and Peter J. Halling
Chemical Society Reviews 2013 - vol. 42(Issue 23) pp:NaN9010-9010
Publication Date(Web):2013/09/13
DOI:10.1039/C3CS60270B
Porous materials are widely employed as supports in the immobilisation of enzymes. Traditionally macroporous materials with pore diameters >50 nm were believed to be the most suitable support material, ensuring no spatial restrictions upon enzyme molecules entering such large pores. In recent years however, there has been growing emphasis in the use of mesoporous supports with pore diameters ranging between 2 and 50 nm. It is thought this smaller pore range may offer enhanced conformational stability to immobilised enzymes while not being so small as to restrict enzyme access. Despite their increasing popularity, many argue that mesoporous materials have not yet proven superior to traditional macroporous supports for enzyme immobilisation. Through the design and application of a unique confidence rating system we were able to accurately compare data and establish trends between pore characteristics and protein loading. By analysing published data (182 experiments in total) and extracting pore characteristics and protein loading values, we have described three categories of pore diameters in which correlations between pore characteristics and protein loading are noted. With pore diameters less than 10 nm we see a general decrease in protein loading as the enzymes find physical restrictions in accessing the high surface offered in this pore diameter range. At pore sizes greater than 100 nm, protein loading generally decreases due to a concomitant reduction in available surface area. In the pore range of 10–100 nm there it is expected to see a decrease in protein loading level with increasing pore diameter. In fact protein loading in this range remains largely constant, suggesting some degree of protein–protein interaction blocking pores and restricting access to the increasing surface area available at decreasing pore diameters. No trends were established between pore characteristics and retention of activity.
L-Leucinamide, N-acetyl-L-tryptophyl-
3,6,9,12,15-Pentaoxabicyclo[15.3.1]heneicosa-1(21),17,19-trien-21-ol
L-Leucinamide, N-[(1,1-dimethylethoxy)carbonyl]-L-alanyl-L-phenylalanyl-
FURO[3,4-C]PYRIDIN-7-OL, 1,3-DIHYDRO-1-METHOXY-6-METHYL-
L-Alanine, N-[(phenylmethoxy)carbonyl]-, butyl ester
Glycine, N-(N-acetyl-L-tryptophyl)-
L-Leucinamide, N2-[(phenylmethoxy)carbonyl]-L-glutaminyl-
3-hydroxymethyl-4,5-isopropylidenedioxy-6-methylpyridine hydrochloride
Poly[oxy(1-methyl-3-oxo-1,3-propanediyl)]
L-Phenylalanine, N-[(1,1-dimethylethoxy)carbonyl]-L-alanyl-, methyl ester