Shun’ichi Kuroda

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Name: Shun’ichi Kuroda
Organization: Nagoya University
Department: Graduate School of Bioagricultural Sciences
Title:
Co-reporter:Akiko Kida, Masumi Iijima, Tomoaki Niimi, Andrés D. Maturana, Nobuo Yoshimoto, and Shun’ichi Kuroda
Analytical Chemistry 2013 Volume 85(Issue 3) pp:1753
Publication Date(Web):January 8, 2013
DOI:10.1021/ac303067k
For establishing cells that secrete antibodies most efficiently (e.g., hybridomas, CHO (Chinese hamster ovary) cells), the screening and subsequent breeding of promising cells have been performed at the single-colony level, which requires several weeks to propagate a substantial number of cells by forming colonies from single cells for evaluation by the conventional assays. However, this screening process lacks high-throughput performance in time and colony numbers. Therefore, development of novel methods is expected to identify single cells secreting higher amounts of antibodies in real-time and in a nondestructive manner without colony formation. In this study, we prepared lipid-labeled antimouse IgG Fc antibodies (capture molecules) that were uniformly displayed on the surface of candidate cells. Secreted nascent antibodies were subsequently sandwiched between capture molecules and fluorescence-labeled antimouse IgG F(ab′)2 F(ab′)2 (detection molecules). This newly developed method is hereinafter referred to as a cell surface-fluorescence immunosorbent assay (CS-FIA). The fluorescence intensity of each cell was found to correlate well with the amount of sandwiched antibodies (from 6.25 fg/cell to 6.40 pg/cell). When about 4 × 103 cells of mouse hybridomas were subjected to CS-FIA, we isolated 28 hybridomas showing the highest fluorescence intensity within a day. Furthermore, after propagation of single cells to about 105 cells (after 2 weeks), 20 hybridomas were still able to secrete higher amounts (up to 7-fold) of antibodies than parental hybridomas. Our results demonstrate that CS-FIA is a powerful method for the single-cell-based establishment of cells that secrete most efficiently not only antibodies but also various biomolecules.
Co-reporter:Masumi Iijima, Nobuo Yoshimoto, Tomoaki Niimi, Andrés Daniel Maturana and Shun'ichi Kuroda  
Analyst 2013 vol. 138(Issue 12) pp:3470-3477
Publication Date(Web):15 Apr 2013
DOI:10.1039/C3AN00481C
The orientation of sensing molecules on solid phase biosensors has to be optimized to facilitate efficient binding of analytes. Since conventional observation methods (e.g., electron microscopy, atomic force microscopy, time-of-flight secondary ion mass spectrometry) require exaggerated machines and possess insufficient resolution for single molecule analyses, functional assays based on the reactivity to analytes have thus far been used for this optimization. However, it is not clear whether these assays can judge whether sensing molecules are fixed in an oriented-immobilization manner or not. Here, we describe that bio-nanocapsules of about 30 nm diameter, displaying approximately 120 molecules of a tandem form of the immunoglobulin (Ig) G Fc-binding Z domain (ZZ-BNCs), can discriminate between the Fc regions of IgGs fixed in an oriented-immobilization manner and those fixed randomly, thus facilitating the evaluation of the orientation of IgGs in immunosensors. Furthermore, in sandwich immunoassays, ZZ-BNCs can bind specifically to detection-IgGs fixed in an oriented-immobilization manner by antigen-capture IgG complexes, rather than to capture-IgGs fixed randomly onto a solid phase, allowing the simultaneous use of the same IgG as capture- and detection-IgGs. Thus, we demonstrate that ZZ-BNCs are a unique probe for evaluating the orientation of IgGs on a solid phase.
Co-reporter:Masaharu Somiya, Nobuo Yoshimoto, Masumi Iijima, Tomoaki Niimi, Takehisa Dewa, Joohee Jung, Shun’ichi Kuroda
Bioorganic & Medicinal Chemistry 2012 Volume 20(Issue 12) pp:3873-3879
Publication Date(Web):15 June 2012
DOI:10.1016/j.bmc.2012.04.031
We have previously demonstrated that lipoplex, a complex of cationic liposomes and DNA, could be targeted to human hepatic cells in vitro and in vivo by conjugation with bio-nanocapsules (BNCs) comprising hepatitis B virus (HBV) surface antigen L protein particles. Because the BNC-lipoplex complexes were endowed with the human hepatic cell-specific infection machinery from HBV, the complexes showed excellent specific transfection efficiency in human hepatic cells. In this study, we have found that polyplex (a complex of polyethyleneimine (PEI) and DNA) could form stable complexes with BNCs spontaneously. The diameter and ζ-potential of BNC-polyplex complexes are about 240 nm and +3.54 mV, respectively, which make them more suitable for in vivo use than polyplex alone. BNC-polyplex complexes with an N/P ratio (the molar ratio of the amine group of PEI to the phosphate group of DNA) of 40 showed excellent transfection efficiency in human hepatic cells. When acidification of endosomes was inhibited by bafilomycin A1, the complexes showed higher transfection efficiency than polyplex itself, strongly suggesting that the complexes escaped from endosomes by both fusogenic activity of BNCs and proton sponge activity of polyplex. Furthermore, the cytotoxicity is comparable to that of polyplex of the same N/P value. Thus, BNC-polyplex complexes would be a promising gene delivery carrier for human liver-specific gene therapy.BNC-polyplex complexes could enter human hepatic cells specifically via the early infection mechanism of HBV, and exert endosomal escape through BNC-derived membrane fusion and the PEI-derived proton sponge effect.
Co-reporter:Ai Hasebe;Hiroki Tashima;Teruhiko Ide;Masumi Iijima
Molecular Biotechnology 2012 Volume 51( Issue 1) pp:58-66
Publication Date(Web):2012 May
DOI:10.1007/s12033-011-9440-4
NELL1 is a secretory protein that induces osteogenic differentiation and bone formation by osteoblastic cells. Because of its potent osteoinductive activity, NELL1 may be useful for bone regeneration therapy. However, at present, we have little knowledge regarding NELL1 receptors and NELL1-mediated signaling pathways. We have previously produced NELL1 using an insect’s cell expression system; however, the protein was relatively unstable and was degraded by proteases released from dead cells. In the present study, NELL1 protein was expressed in human embryonic kidney 293-F cells. Stable cell lines expressing NELL1 fused to a C-terminal hexahistidine-tag were obtained by G418 selection of transfected cells. Cells grown in serum-free medium showed high levels of NELL1 protein production (approximately 4 mg/l cell culture) for up to 6 months. NELL1 protein was purified from culture medium using a one-step nickel-chelate affinity chromatography protocol. Purified NELL1 protein immobilized onto culture dishes induced the expression of both early and late osteogenic markers on mouse mesenchymal C3H10T1/2 cells. When NELL1-expressing 293-F cells were grown on gelatin-coated glass cover slips, recombinant NELL1 was deposited in the extracellular matrix after detachment of cells. These results suggest that NELL1 acts as an extracellular matrix component. Recombinant NELL1 formed multimers and was glycosylated. An abundant source of functionally active NELL1 protein will be useful for more advanced studies, such as the development of novel techniques for bone regeneration.
Co-reporter:Masumi Iijima, Hiroyasu Kadoya, Satoko Hatahira, Shingo Hiramatsu, Giman Jung, Aaron Martin, John Quinn, Joohee Jung, Seong-Yun Jeong, Eun Kyung Choi, Takeshi Arakawa, Fumiyo Hinako, Masanobu Kusunoki, Nobuo Yoshimoto, Tomoaki Niimi, Katsuyuki Tanizawa, Shun’ichi Kuroda
Biomaterials 2011 32(6) pp: 1455-1464
Publication Date(Web):
DOI:10.1016/j.biomaterials.2010.10.057
Co-reporter:Masumi Iijima, Takashi Matsuzaki, Nobuo Yoshimoto, Tomoaki Niimi, Katsuyuki Tanizawa, Shun’ichi Kuroda
Biomaterials 2011 32(34) pp: 9011-9020
Publication Date(Web):
DOI:10.1016/j.biomaterials.2011.08.012
Co-reporter:Masumi Iijima, Takashi Matsuzaki, Hiroyasu Kadoya, Satoko Hatahira, Shingo Hiramatsu, Giman Jung, Katsuyuki Tanizawa, Shun’ichi Kuroda
Analytical Biochemistry 2010 Volume 396(Issue 2) pp:257-261
Publication Date(Web):15 January 2010
DOI:10.1016/j.ab.2009.10.010
Macromolecules that can assemble a large number of enzyme and antibody molecules have been used frequently for improvement of sensitivities in enzyme-linked immunosorbent assays (ELISAs). We generated bionanocapsules (BNCs) of approximately 30 nm displaying immunoglobulin G (IgG) Fc-binding ZZ domains derived from Staphylococcus aureus protein A (designated as ZZ-BNC). In the conventional ELISA using primary antibody and horseradish peroxidase-labeled secondary antibody for detecting antigen on the solid phase, ZZ-BNCs in the aqueous phase gave an approximately 10-fold higher signal. In Western blot analysis, the mixture of ZZ-BNCs with secondary antibody gave an approximately 50-fold higher signal than that without ZZ-BNCs. These results suggest that a large number of secondary antibody molecules are immobilized on the surface of ZZ-BNCs and attached to antigen, leading to the significant enhancement of sensitivity. In combination with the avidin–biotin complex system, biotinylated ZZ-BNCs showed more significant signal enhancement in ELISA and Western blot analysis. Thus, ZZ-BNC is expected to increase the performance of various conventional immunoassays.
Co-reporter:Joohee Jung, Masumi Iijima, Nobuo Yoshimoto, Mano Sasaki, Tomoaki Niimi, Kenji Tatematsu, Seong-Yun Jeong, Eun Kyung Choi, Katsuyuki Tanizawa, Shun’ichi Kuroda
Protein Expression and Purification (August 2011) Volume 78(Issue 2) pp:149-155
Publication Date(Web):1 August 2011
DOI:10.1016/j.pep.2011.04.008
Bio-nanocapsules (BNCs) are hollow particles (approx. 50 nm diameter) consisting of hepatitis B virus surface antigen (HBsAg) large (L, pre-S1 + pre-S2 + S) proteins embedded in a unilamellar liposome, sharing the same transmembrane S region with an immunogen of hepatitis B vaccine (i.e., HBsAg small (S) protein particle). BNCs can incorporate drugs and genes into the hollow space and systemic administration of the BNCs can deliver the products to human liver via the human hepatocyte-specific receptor within the pre-S (pre-S1 + pre-S2) region displayed on BNC’s surface. Thus, BNCs are expected to offer efficient and safe non-viral nanocarriers to deliver human liver-specific genes and drugs. To date, BNCs have been purified from the crude extract of BNC-overexpressing yeast cells by fractionation with polyethylene glycol followed by one CsCl equilibrium and two sucrose density gradient ultracentrifugation steps. However, the process was inefficient in terms of yield and time, and was not suitable for mass production because of the ultracentrifugation step. Furthermore, trace contamination with yeast-derived proteinases degraded the pre-S region, which is indispensable for liver-targeting, during long-term storage. In this study, we developed a new purification method involving heat treatment and sulfated cellulofine column chromatography to facilitate rapid purification, completely remove proteinases, and enable mass production. In addition, the BNCs were functional for at least 14 months after lyophilization with 5% (w/v) sucrose as an excipient. This new process will significantly contribute to the development of forthcoming BNC-based nanomedicines as well as hepatitis B vaccines.
Co-reporter:Nobuo Yoshimoto, Shun'ichi Kuroda
Journal of Bioscience and Bioengineering (April 2014) Volume 117(Issue 4) pp:394-400
Publication Date(Web):1 April 2014
DOI:10.1016/j.jbiosc.2013.09.016
For efficient biomolecule production (e.g., antibodies, recombinant proteins), mammalian cells with high expression rates should be selected from cell libraries, propagated while maintaining a homogenous expression rate, and subsequently stabilized at their high expression rate. Clusters of isogenic cells (i.e., colonies) have been used for these processes. However, cellular heterogeneity makes it difficult to obtain cell lines with the highest expression rates by using single-colony-based breeding. Furthermore, even among the single cells in an isogenic cell population, the desired cell properties fluctuate stochastically during long-term culture. Therefore, although the molecular mechanisms underlying stochastic fluctuation are poorly understood, it is necessary to establish excellent cell lines in order to breed single cells to have higher expression, higher stability, and higher homogeneity while suppressing stochastic fluctuation (i.e., single-cell-based breeding). In this review, we describe various methods for manipulating single cells and facilitating single-cell analysis in order to better understand stochastic fluctuation. We demonstrated that single-cell-based breeding is practical and promising by using a high-throughput automated system to analyze and manipulate single cells.
5-methoxy-1H-Indole-1-carboxylic acid
Phenol, 2-[(1E)-2-(3,5-dimethoxyphenyl)ethenyl]-6-methoxy-
Phenol, 2-[(1E)-2-(3,5-dimethoxyphenyl)ethenyl]-
Bicyclo[2.2.1]heptane, 2-[(1E)-2-phenylethenyl]-, (1R,4S)-rel-
5H-[1]Benzopyrano[4,3-b]pyridine-3-carbonitrile, 2-amino-4-phenyl-
(E)-2-(2-Nitrovinyl)phenol
4H-1-Benzopyran-4-one, 2,3-dihydro-, oxime, (4E)-
2-ETHENYL-5-METHOXYPHENOL
BENZAMIDE, 4-CHLORO-N-(2,2-DIMETHYL-1-OXOPROPOXY)-