Co-reporter:Peng Chen, Yiran Guo, Xiaojun Feng, Shuangqian Yan, Jie Wang, Yiwei Li, Wei Du, and Bi-Feng Liu
Analytical Chemistry September 5, 2017 Volume 89(Issue 17) pp:9209-9209
Publication Date(Web):August 9, 2017
DOI:10.1021/acs.analchem.7b01967
Cellular environments are inherently dynamic and generally involve complex, temporally varying signals. Reconstruction of these environments with high spatial and temporal fidelity and simultaneous imaging of intracellular dynamics in live cells remains a major challenge. In this paper, a microfluidic chemical function generator (μCFG) was proposed for probing cell dynamic signaling with high temporal resolution. By combining a hydrodynamic gating module with a chaotic advection mixing module, the μCFG was able to generate a variety of chemical waveforms, such as digital pulsatile chemical waveforms with a frequency higher than 10 Hz and analog chemical waveforms with a frequency higher than 0.2 Hz. The shape, frequency, amplitude, and duty cycle of the waveforms could be also conveniently modulated. To demonstrate the capability of μCFG of probing fast biological processes and elucidate signal transduction pathways in complex signaling networks, a variety of temporal responses of Ca2+ signaling to ATP-induced activation of the P2Y receptor, a prototypical G-protein coupled receptor (GPCR), were investigated in live cells by precisely and dynamically controlling their microenvironment.
Co-reporter:Yun Xia, Shuangqian Yan, Xian Zhang, Peng Ma, Wei Du, Xiaojun Feng, and Bi-Feng Liu
Analytical Chemistry March 21, 2017 Volume 89(Issue 6) pp:3716-3716
Publication Date(Web):February 17, 2017
DOI:10.1021/acs.analchem.7b00031
Digital loop-mediated isothermal amplification (dLAMP) is an attractive approach for absolute quantification of nucleic acids with high sensitivity and selectivity. Theoretical and numerical analysis of dLAMP provides necessary guidance for the design and analysis of dLAMP devices. In this work, a mathematical model was proposed on the basis of the Monte Carlo method and the theories of Poisson statistics and chemometrics. To examine the established model, we fabricated a spiral chip with 1200 uniform and discrete reaction chambers (9.6 nL) for absolute quantification of pathogenic DNA samples by dLAMP. Under the optimized conditions, dLAMP analysis on the spiral chip realized quantification of nucleic acids spanning over 4 orders of magnitude in concentration with sensitivity as low as 8.7 × 10–2 copies/μL in 40 min. The experimental results were consistent with the proposed mathematical model, which could provide useful guideline for future development of dLAMP devices.
Co-reporter:Bi-Feng Liu;Xian Zhang;Xiaojun Feng;Wei Du;Shuangqian Yan;Xiaofang Dai
ACS Applied Materials & Interfaces December 14, 2016 Volume 8(Issue 49) pp:33457-33463
Publication Date(Web):November 22, 2016
DOI:10.1021/acsami.6b11673
The circulating tumor cells (CTCs), originating from the primary tumor, play a vital role in cancer diagnosis, prognosis, disease monitoring, and precise therapy. However, the CTCs are extremely rare in the peripheral bloodstream and hard to be isolated. To overcome current limitations associated with CTC capture and analysis, the strategy incorporating nanostructures with microfluidic devices receives wide attention. Here, we demonstrated a three-dimensional microfluidic device (Rm-chip) for capturing cancer cells with high efficiency by integrating a novel hierarchical structure, the “Rhipsalis (Cactaceae)”-like micropillar array, into the Rm-chip. The PDMS micropillar array was fabricated by soft-lithography and rapid prototyping method, which was then conformally plated with a thin gold layer through electroless plating. EpCAM antibody was modified onto the surface of the micropillars through the thiol-oligonucleotide linkers in order to release captured cancer cells by DNase I treatment. The antibody-functionalized device achieved an average capture efficiency of 88% in PBS and 83.7% in whole blood samples. We believe the Rm-chip provided a convenient, economical, and versatile approach for cell analysis with wide potential applications.Keywords: electroless plating; hierarchical structure; micropillar array; rare cancer cell; three-dimensional capture;
Co-reporter:Jie Wang, Wei Li, Leicheng Zhang, Lin Ban, Peng Chen, Wei Du, Xiaojun Feng, and Bi-Feng Liu
ACS Applied Materials & Interfaces August 23, 2017 Volume 9(Issue 33) pp:27441-27441
Publication Date(Web):August 1, 2017
DOI:10.1021/acsami.7b06464
Exosomes, which are lipid membrane-bound nanovesicles (50–150 nm in diameter), have aroused extensive attention for their potential applications in invasive molecular and stand for a new therapeutic delivery system. However, they are limited by poor targeting ability and a lack of efficient isolation techniques. Here, we present a three-dimensional nanostructured microfluidic chip, in which arrays of micropillars were functionalized with crisscrossed multiwall carbon nanotubes by chemical deposition, to capture exosomes with high efficiency through a combination of a specific recognition molecule (CD63) and the unique topography of the nanomaterials. As is proven, this nanostructured interface substantially made the immuno capturing of exosomes more efficient. A high percentage of intact vesicles <150 nm were readily purified. As a further application, we added functionality to the exosomes by a chemical editing approach for targeted drug delivery. Donor cells were labeled chemically with dual ligands (biotin and avidin) in the phospholipid membrane and encapsulated drugs in the cytosol. Though the engineered donor cells secreted exosomes, the dual ligands, together with the drugs, were inherited by the exosomes, which were then isolated with the microfluidic chip. Then, the isolated exosomes were used as drug delivery vehicles and showed strong targeting abilities to tumor cells and highly efficient receptor-mediated cellular uptake when exposed to recipient cells. Thus, the anticancer effect of chemotherapeutic drugs was improved significantly. It suggested that this platform could provide a useful tool for isolating intact exosomes with high efficiency and exploiting their natural carrier function to deliver chemotherapeutic drugs to tumor cells with increased efficacy and targeting capacity.Keywords: drug delivery; dual ligands; exosome; microfluidic chip; scalable separation; tumor targeting;
Co-reporter:Jie Wang;Wei Li;Zhichao Lu;Leicheng Zhang;Yu Hu;Qiubai Li;Wei Du;Xiaojun Feng;Haibo Jia
Nanoscale (2009-Present) 2017 vol. 9(Issue 40) pp:15598-15605
Publication Date(Web):2017/10/19
DOI:10.1039/C7NR04425A
Promoted therapeutic angiogenesis is a major objective in the area of regenerative medicine, and sufficient vascularization of artificial tissues or organs is one of the main difficulties for the realization of tissue engineering methods. The identification of new kinds of pro-angiogenic materials will greatly profit developments in regenerative medicine. The use of exosomes for this intention is a considerably new idea developed in recent years. However, several limitations need to be addressed before their use as clinical therapeutics, including the lack of efficient exosome enrichment and methods to endow exosomes with targeting ability. Herein, we pioneered biomimetic particles with topographic structures for exosome isolation. Using this system, nearly 80% of exosomes were isolated in 30 min. Through a donor cell-assisted membrane modification strategy, the isolated exosomes exhibited increased targeting to blood vessels due to the modified Arg-Gly-Asp (RGD) peptide on the exosome membrane, and simultaneously possessed a synergistic therapeutic angiogenesis effect and angiogenesis imaging attributed to metabolic labeling by click chemistry both in vitro and in vivo. The engineered exosomes represent a potential new therapeutic tool for angiogenesis therapy and imaging in a bio-friendly manner.
Co-reporter:Yiwei Li;Pu Chen;Yachao Wang;Shuangqian Yan;Xiaojun Feng;Wei Du;Stephan A. Koehler;Utkan Demirci
Advanced Materials 2016 Volume 28( Issue 18) pp:3543-3548
Publication Date(Web):
DOI:10.1002/adma.201600247
Co-reporter:Dongjuan Chen, Fengkai Fan, Xingfu Zhao, Fei Xu, Peng Chen, Jie Wang, Lin Ban, Zhihua Liu, Xiaojun Feng, Yuhui Zhang, and Bi-Feng Liu
Analytical Chemistry 2016 Volume 88(Issue 4) pp:2466
Publication Date(Web):January 25, 2016
DOI:10.1021/acs.analchem.5b04645
Proteomics at single-cell resolution can help to identify the heterogeneity among cell populations, shows more and more significance in current chemistry and biology. In this work, we demonstrated a new single cell chemical proteomic (SCCP) strategy with a membrane-permeable activity-based probe (ABP) to characterize the functional proteins in lysosome located in the cytosol. The ABP targeted to the cysteine cathepsin family protein, CpFABP-G, was designed for cysteine cathepsins labeling. The labeled HeLa cell of a cancer cell line was injected into a capillary and was lysed by SDS solution with heating. The lysate was then online readout by capillary electrophoresis-laser-induced fluorescence method. Due to the employment of highly specified ABP kicking out the uncorrelated proteins, the expression of cysteine cathepsins in individual HeLa cells was easily detected, and heterogeneity among those HeLa cells was readily discriminated. Further work was concentrated on SCCP analysis of the mouse leukemia cell of monocyte macrophage (RAW264.7). It was for the first time identifying two expression modes of cysteine cathepsins in RAW264.7, which could be undermined by the analysis of cell populations. We believed that SCCP would be one of the powerful alternatives for proteomics at single-cell resolution.
Co-reporter:Peng Chen, Xiaojun Feng, Dongjuan Chen, Chao Liu, Wei Du, Bi-Feng Liu
Sensors and Actuators B: Chemical 2016 Volume 234() pp:583-592
Publication Date(Web):29 October 2016
DOI:10.1016/j.snb.2016.04.184
•Gated pinched-flow was developed for flexible fluid control.•Chemical stimuli were delivered to target cells with high spatiotemporal resolution.•Intercellular calcium waves among contacting cells were investigated.In this paper, a new microfluidic approach, termed as gated pinched-flow (GPF), was developed for investigating cell-to-cell signaling dynamics coupling with optical imaging. It takes both advantages of conventional hydrodynamic gating and focusing, enabling precise on-chip chemical stimulation or perfusion upon targeted single cells among cells populations with high temporal (<50 ms) and spatial resolution. Theoretical model for GPF was first established and further validated by both numerical simulations and experiments. Stimulation of single HeLa cells was investigated to demonstrate the capability of the GPF for localized chemical stimulations of target single cells without interfering with adjacent cells. Guided by GPF, ATP-activated propagation of intercellular calcium waves (ICWs) among the seeded NIH-3T3 cells in the microchannel was then imaged with high repeatability. Inhibition investigations verified that those cell-to-cell calcium signals depended upon direct cytosolic transfer of molecules via gap junctions. The developed microfluidic method opens up a new avenue for cell-to-cell signaling studies and drug screening.
Co-reporter:Chao Liu, Ying Li, Yiwei Li, Peng Chen, Xiaojun Feng, Wei Du, Bi-Feng Liu
Talanta 2016 Volume 149() pp:237-243
Publication Date(Web):1 March 2016
DOI:10.1016/j.talanta.2015.11.036
•New 3D passive microfluidic mixer based on Dean flows and expansion vortices.•The fastest micromixer for high viscosity solutions.•Folding kinetics of G-quadruplex under molecular crowding conditions.Rapid mixing of highly viscous solutions is a great challenge, which helps to analyze the reaction kinetics in viscous liquid phase, particularly to discover the folding kinetics of macromolecules under molecular crowding conditions mimicking the conditions inside cells. Here, we demonstrated a novel microfluidic mixer based on Dean flows with three-dimensional (3D) microchannel configuration for fast mixing of high-viscosity fluids. The main structure contained three consecutive subunits, each consisting of a “U”-type channel followed by a chamber with different width and height. Thus, the two solutions injected from the two inlets would undergo a mixing in the first “U”-type channel due to the Dean flow effect, and simultaneous vortices expansions in both horizontal and vertical directions in the following chamber. Numerical simulations and experimental characterizations confirmed that the micromixer could achieve a mixing time of 122.4 μs for solutions with viscosities about 33.6 times that of pure water. It was the fastest micromixer for high viscosity solutions compared with previous reports. With this highly efficient 3D microfluidic mixer, we further characterized the early folding kinetics of human telomere G-quadruplex under molecular crowding conditions, and unravelled a new folding process within 550 μs.
Co-reporter:Yiwei Li, Dongjuan Chen, Yifang Zhang, Chao Liu, Peng Chen, Yachao Wang, Xiaojun Feng, Wei Du, Bi-Feng Liu
Sensors and Actuators B: Chemical 2016 Volume 225() pp:563-571
Publication Date(Web):31 March 2016
DOI:10.1016/j.snb.2015.11.097
Multidrug resistance analysis represents a great challenge in cancer chemotherapy, drug development and pathological study. In this paper, multifunctional gradients-customizing microfluidic devices were developed for high-throughput single-cell multidrug resistance (MDR) analysis. The gradient profile was determined by the lengths of the distribution microchannels regardless of flow rates and pressure, which provided good stability and remarkably reduced redundancy of microfluidic architecture. The drug of gradient concentrations consecutively stimulate upon the cells in the downstreaming cell cultivation chamber. Time-dependent drug efflux kinetics of HepG2 cells were firstly investigated on our device using both the different-single-cell and the same-single-cell strategies. Furthermore, hepatic polarized HepG2 cells, which collected the secreted cholephilic substances in the apical vacuoles, were used as model to investigate the inhibition of MDR-associated protein with secretion inhibitor cyclosporine A of varied concentrations on single organelle level. Finally, a high-throughput drug screening experiment was conducted to examine both the chemo-sensitizing effect and the cytotoxity of the potential chemo-sensitizing agents. Conclusively, the results confirmed that our method was a highly efficient way to analyze multidrug resistance (MDR) at single-cell or even single-organelle level with advantages of high-throughput, flexibility, stability and low sample consumption.
Co-reporter:Yiwei Li, Xiaojun Feng, Yachao Wang, Wei Du, Peng Chen, Chao Liu and Bi-Feng Liu
Lab on a Chip 2015 vol. 15(Issue 15) pp:3203-3210
Publication Date(Web):10 Jun 2015
DOI:10.1039/C5LC00618J
Active control over the cell gradient is essential for understanding biological systems and the reconstitution of the functionality of many types of tissues, particularly for organ-on-a-chip. Here, we propose a three-dimensional (3D) microfluidic strategy for generating controllable cell gradients. In this approach, a homogeneous cell suspension is loaded into a 3D stair-shaped PDMS microchannel to generate a cell gradient within 10 min by sedimentation. We demonstrate that cell gradients of various profiles (exponential and piecewise linear) can be achieved by precisely controlling the height of each layer during the fabrication. With sequential seeding, we further demonstrate the generation of two overlapping cell gradients on the same glass substrate with pre-defined designs. The cell gradient-based QD cytotoxicity assay also demonstrated that cell behaviors and resistances were regulated by the changes in cell density. These results reveal that the proposed 3D microfluidic strategy provides a simple and versatile means for establishing controllable gradients in cell density, opening up a new avenue for reconstructing functional tissues.
Co-reporter:Xixian Wang, Rui Hu, Anle Ge, Liang Hu, Shanshan Wang, Xiaojun Feng, Wei Du and Bi-Feng Liu
Lab on a Chip 2015 vol. 15(Issue 11) pp:2513-2521
Publication Date(Web):27 Apr 2015
DOI:10.1039/C5LC00354G
C. elegans as a powerful model organism has been widely used in fundamental biological studies. Many of these studies frequently need a large number of different stage-synchronized worms due to the stage-specific features of C. elegans among 4 distinct larval stages and the adult stage. In this work, we present an interesting and cost-effective microfluidic approach to realize simultaneous sorting of C. elegans of different developmental stages by deflecting electrotaxis. The microfluidic device was fabricated using PDMS consisting of symmetric sorting channels with specific angles, which was further hybridized to an agarose plate. While applying an electric field, different stages of C. elegans would crawl to the negative pore with different angles due to their deflecting electrotaxis. Thus, the worms were separated and synchronized by stages. lon-2 mutant was further used to study this electrotactic response and the results indicated that the body size plays a key role in determining the deflecting angle in matured adult worms. In addition to discriminating wild-type hermaphrodites, it could also be employed to sort mutants with abnormal development sizes and males. Therefore, our device provided a versatile and highly efficient platform for sorting C. elegans to meet the requirement of large numbers of different stage-synchronized worms. It can also be further used to investigate the neuronal basis of deflecting electrotaxis in worms.
Co-reporter:Ying Li, Chao Liu, Xiaojun Feng, Youzhi Xu, and Bi-Feng Liu
Analytical Chemistry 2014 Volume 86(Issue 9) pp:4333
Publication Date(Web):April 11, 2014
DOI:10.1021/ac500112d
The folding of G-quadruplex is hypothesized to undergo a complex process, from the formation of a hairpin structure to a triplex intermediate and to the final G-quadruplex. Currently, no experimental evidence has been found for the hairpin formation, because it folds in the time regime of 10–100 μs, entailing the development of microfluidic mixers with a mixing time of less than 10 μs. In this paper, we reported an ultrarapid micromixer with a mixing time of 5.5 μs, which represents the fastest turbulent micromixer to our best knowledge. Evaluations of the micromixer were conducted to confirm its mixing efficiency for small molecules and macromolecules. This new micromixer enabled us to interrogate the hairpin formation in the early folding process of human telomere G-quadruplex. The experimental kinetic evidence for the formation of hairpin was obtained for the first time.
Co-reporter:Yiwei Li, Xinghua Yan, Xiaojun Feng, Jie Wang, Wei Du, Yachao Wang, Peng Chen, Liang Xiong, and Bi-Feng Liu
Analytical Chemistry 2014 Volume 86(Issue 21) pp:10653
Publication Date(Web):September 29, 2014
DOI:10.1021/ac5026623
Preconcentration of pathogens from patient samples represents a great challenge in point-of-care (POC) diagnostics. Here, a low-cost, rapid, and portable agarose-based microfluidic device was developed to concentrate biological fluid from micro- to picoliter volume. The microfluidic concentrator consisted of a glass slide simply covered by an agarose layer with a binary tree-shaped microchannel, in which pathogens could be concentrated at the end of the microchannel due to the capillary effect and the strong water permeability of the agarose gel. The fluorescent Escherichia coli strain OP50 was used to demonstrate the capacity of the agarose-based device. Results showed that 90% recovery efficiency could be achieved with a million-fold volume reduction from 400 μL to 400 pL. For concentration of 1 × 103 cells mL–1 bacteria, approximately ten million-fold enrichment in cell density was realized with volume reduction from 100 μL to 1.6 pL. Urine and blood plasma samples were further tested to validate the developed method. In conjugation with fluorescence immunoassay, we successfully applied the method to the concentration and detection of infectious Staphylococcus aureus in clinics. The agarose-based microfluidic concentrator provided an efficient approach for POC detection of pathogens.
Co-reporter:Fei Xu;Han Zhao;Dr. Xiaojun Feng;Dr. Linhai Chen;Dongjuan Chen;Yang Zhang; Fajun Nan; Jianfeng Liu; Bi-Feng Liu
Angewandte Chemie International Edition 2014 Volume 53( Issue 26) pp:6730-6733
Publication Date(Web):
DOI:10.1002/anie.201402363
Abstract
We propose a novel single-cell chemical proteomics (SCCP) strategy to profile low-abundance membrane proteins in single cells. In this approach, the membrane protein GB1 and its splicing variants were targeted on cultured cell lines and primary neurons using a specifically designed activity-based probe. The functionally labeled single cells were encapsulated in individual buffer droplets on a PDMS microwell array, and were further picked up one at a time and loaded into a capillary electrophoresis system for cell lysis, separation, and laser-induced fluorescence detection of the targeted proteins. The results revealed the expression of GB1 splicing variants in HEK and MEF cells, which was previously only suggested at the transcriptional level. We further applied this method to investigate single primary cells and observed significant heterogeneity among individual mouse cerebellar granule neurons. Interference experiments with GB1 antagonist and agonist validated this observation.
Co-reporter:Yiwei Li, Xiaojun Feng, Wei Du, Ying Li, and Bi-Feng Liu
Analytical Chemistry 2013 Volume 85(Issue 8) pp:4066
Publication Date(Web):March 11, 2013
DOI:10.1021/ac4000893
Genomic DNA damage was generally identified with a “comet assay” but limited by low throughput and poor reproducibility. Here we demonstrated an ultrahigh-throughput approach with a microfluidic chip to simultaneously interrogate DNA damage conditions of up to 10 000 individual cells (approximately 100-fold in throughput over the conventional method) with better reproducibility. For experiment, agarose was chosen as the chip fabrication material, which would further act as an electrophoretic sieving matrix for DNA fragments separation. Cancer cells (HeLa or HepG2) were lined up in parallel microchannels by capillary effect to form a dense array of single cells. After treatment with different doses of hydrogen peroxide, individual cells were then lysed for subsequent single-cell gel electrophoresis in the direction vertical to microchannel and fluorescence detection. Through morphological analysis and fluorescent measurement of comet-shaped DNA, the damage conditions of individual cells could be quantified. DNA repair capacity was further evaluated to validate the reliability of this method. It indicated that the agarose-based microfluidic comet array electrophoresis was simple, highly reproducible, and of high throughput, providing a new method for highly efficient single-cell genomic analysis.
Co-reporter:Ying Li, Fei Xu, Chao Liu, Youzhi Xu, Xiaojun Feng and Bi-Feng Liu
Analyst 2013 vol. 138(Issue 16) pp:4475-4482
Publication Date(Web):21 May 2013
DOI:10.1039/C3AN00521F
Kinetic measurement of biomacromolecular interaction plays a significant role in revealing the underlying mechanisms of cellular activities. Due to the small diffusion coefficient of biomacromolecules, it is difficult to resolve the rapid kinetic process with traditional analytical methods such as stopped-flow or laminar mixers. Here, we demonstrated a unique continuous-flow laminar mixer based on microfluidic dual-hydrodynamic focusing to characterize the kinetics of DNA–protein interactions. The time window of this mixer for kinetics observation could cover from sub-milliseconds to seconds, which made it possible to capture the folding process with a wide dynamic range. Moreover, the sample consumption was remarkably reduced to <0.55 μL min−1, over 1000-fold saving in comparison to those reported previously. We further interrogated the interaction kinetics of G-quadruplex and the single-stranded DNA binding protein, indicating that this novel micromixer would be a useful approach for analyzing the interaction kinetics of biomacromolecules.
Co-reporter:Xixian Wang, Lichun Tang, Yuyang Xia, Liang Hu, Xiaojun Feng, Wei Du and Bi-Feng Liu
Integrative Biology 2013 vol. 5(Issue 4) pp:728-737
Publication Date(Web):07 Feb 2013
DOI:10.1039/C3IB20289E
Crowding stress has been reported to play an important role in affecting physiological behaviour. To study this process, a reliable analytical method under confined space is essential. In this work, we demonstrated a microfluidic approach for investigating physiological responses of C. elegans to confined spaces. The PDMS microfluidic chip consisting of arrays of micro-columns enabled us to mimic different crowding conditions by changing the intervals among micro-columns. C. elegans were transferred into this micro-column array and the subcellular distribution of DAF-16, which is a well-known transcription factor regulating different stress responses, was monitored for analysing the physiological responses to the confined spaces. We found that the worms exhibited a gradual increase in DAF-16 nuclear localization in the micro-column array with intervals from 200 μm to 40 μm. Moreover, the results showed that the absence of food and crowding stress could cooperate to promote increased DAF-16 nuclear localization. Finally, loss-of-function mutations in mec-4 and mec-10, which are amiloride-sensitive Na+ channel genes expressed in all six gentle touch neurons, accelerated the velocity of DAF-16 nuclear localization, induced by confined space, revealing that mec-4/mec-10 were not required for this stress response. Thus, this device will provide a versatile, reliable and controllable platform for crowding stress studies.
Co-reporter:Xingfu Zhao, Fei Xu, Lichun Tang, Wei Du, Xiaojun Feng, Bi-Feng Liu
Biosensors and Bioelectronics 2013 50() pp: 28-34
Publication Date(Web):
DOI:10.1016/j.bios.2013.06.024
Co-reporter:Jingjing Wang, Zhaoyu Li, Zijing Xu, Liang Hu, Xiaojun Feng, Maorong Chen, Wei Du, Zhengxing Wu, Qingming Luo, Tao Xu, Bi-Feng Liu
Sensors and Actuators B: Chemical 2013 178() pp: 343-349
Publication Date(Web):
DOI:10.1016/j.snb.2012.12.102
Co-reporter:Ying Li, Youzhi Xu, Xiaojun Feng, and Bi-Feng Liu
Analytical Chemistry 2012 Volume 84(Issue 21) pp:9025
Publication Date(Web):September 28, 2012
DOI:10.1021/ac301864r
Tracking the folding kinetics of macromolecules under molecular crowding conditions represents a tremendous challenge due to the high viscosity of the solution. In this paper, we report a unique T-type microfluidic mixer with seven consecutive ω-shaped baffles for fast mixing of high-viscosity fluids. Numerical simulations and experimental characterizations proved that the micromixer could achieve a mixing time of 579.4 μs for solutions with viscosities about 33.6 times that of pure water. Over a 1000-fold improvement in mixing dead time was accomplished in comparison to those reported previously. We further used this highly efficient micromixer to track the early folding kinetics of human telomere G-quadruplex under molecular crowding conditions. Results indicated an exponential process in the initial folding phase of G-quadruplex, and the G-quadruplex formed a more compact structure under higher degrees of molecular crowding conditions.
Co-reporter:Ying Li, Dalu Zhang, Xiaojun Feng, Youzhi Xu, Bi-Feng Liu
Talanta 2012 Volume 88() pp:175-180
Publication Date(Web):15 January 2012
DOI:10.1016/j.talanta.2011.10.028
Analysis of fast biochemical reactions requires rapid mixing of solutions. Micromixers can achieve uniform mixing of solutions in a short time and have been recognized as an attractive tool to analyze fast reactions. However, it is still a challenge to design mixers with simple structure and short dead time. Here, a zigzag turbulent micromixer was developed with a rapid mixing time of 16 μs at sample consumption of 10 μL/s. Numerical simulations and confocal imaging validated this result. Application of the chemiluminescence (CL) reaction demonstrated the use of this mixer in analyzing the kinetic process of the CL reaction. In comparison to the turbulent micromixers reported previously, this zigzag mixer has advantages of short dead time, simple structure and low sample consumption. We anticipate the developed mixer to be a useful tool in studying biochemical kinetics or be integrated to Lab-on-a-chip device as a pretreatment functional unit.Highlights► A rapid zigzag micromixer was developed with a mixing time of 16 μs. ► Numerical simulations and confocal imaging validated the mixing efficiency of this mixer. ► Quench reaction of fluorescein by KI confirmed the mixing efficiency of this mixer. ► The kinetic process of the chemiluminescence reaction was investigated using this mixer.
Co-reporter:Jingjing Wang, Xiaojun Feng, Wei Du, Bi-Feng Liu
Analytica Chimica Acta 2011 Volume 701(Issue 1) pp:23-28
Publication Date(Web):2 September 2011
DOI:10.1016/j.aca.2011.06.007
Conventional neuronal analysis at the single neuron level usually involves culturing of neurons in vitro and analysis of neuronal activities by electrophysiological or pharmacological methods. However, the extracellular environments of in vitro neuronal analysis cannot mimic the exact surroundings of the neurons. Here, we report a microfluidic worm-chip for in vivo analysis of neuronal activities upon dynamic chemical stimulations. A comb-shaped microvalve was developed to immobilize whole animal for high-resolution imaging of neuronal activities. Using a sequential sample introduction system, multiple chemical stimuli were delivered to an individual Caenorhabditis elegans nose tip based on programmed interface shifting of laminar flows. ASH sensory neuron responses to various stimuli in individual C. elegans were quantitatively evaluated, and mutants were significantly defective in neuronal responses to certain stimulus in comparison to others. Sensory reduction in the magnitude of the response to repetitive chemical stimulation with different durations was also found. Our study explored the possibility of real-time detection of neuronal activities in individual animals upon multiple stimulations.Graphical abstractHighlights• A microfluidic device was developed integrating multiple stimuli delivery for in vivo neuronal analysis of immobilized Caenorhabditis elegans. • ASH neuronal responses to various stimuli were quantitatively evaluated. • Rapid identification of mutant animals was realized by comparing responses to those of the wild type. • ASH sensory adaptations upon repetitive stimuli of various durations were investigated.
Co-reporter:Rui Hu, Xiaojun Feng, Pu Chen, Meng Fu, Hong Chen, Lin Guo, Bi-Feng Liu
Journal of Chromatography A 2011 Volume 1218(Issue 1) pp:171-177
Publication Date(Web):7 January 2011
DOI:10.1016/j.chroma.2010.10.090
Membrane proteins play essential roles in regulating various fundamental cellular functions. To investigate membrane proteins, extraction and purification are usually prerequisite steps. Here, we demonstrated a microfluidic aqueous PEG/detergent two-phase system for the purification of membrane proteins from crude cell extract, which replaced the conventional discontinuous agitation method with continuous extraction in laminar flows, resulting in significantly increased extraction speed and efficiency. To evaluate this system, different separation and detection methods were used to identify the purified proteins, such as capillary electrophoresis, SDS-PAGE and nano-HPLC–MS/MS. Swiss-Prot database with Mascot search engine was used to search for membrane proteins from random selected bands of SDS-PAGE. Results indicated that efficient purification of membrane proteins can be achieved within 5–7 s and approximately 90% of the purified proteins were membrane proteins (the highest extraction efficiency reported up to date), including membrane-associated proteins and integral membrane proteins with multiple transmembrane domains. Compared to conventional approaches, this new method had advantages of greater specific surface area, minimal emulsification, reduced sample consumption and analysis time. We expect the developed method to be potentially useful in membrane protein purifications, facilitating the investigation of membrane proteomics.
Co-reporter:Jian Sun, Pu Chen, Xiaojun Feng, Wei Du, Bi-Feng Liu
Biosensors and Bioelectronics 2011 Volume 26(Issue 8) pp:3413-3419
Publication Date(Web):15 April 2011
DOI:10.1016/j.bios.2011.01.013
The use of cell-based biosensors is usually limited by agonist-induced desensitization of cell-surface receptors. In this work, a microfluidic cell-based biosensor (μCBB) was developed for the detection of ATP in liquid environments. It consists of a millisecond chemical pulse generator for sample introduction in a pulsatile manner and a single NIH-3T3 cell expressing endogenous P2Y receptors as the sensing element. ATP solutions were used to simulate input signals for investigating the μCBB. By controlling negative pressures on two outlets of a cross-shaped microfluidic chip, pulses of ATP solutions were generated based on hydrodynamic gated injection. With ATP pulses of 100 ms every 50 s, the amplitude of the resulting calcium spikes maintained at a similar level, suggesting that the receptor desensitization was minimized. Consequently, the developed μCBB could be used for detecting pulsatile samples with extended use times. The sensitivity of the μCBB for detecting ATP was further determined and the cellular responses to millisecond ATP pulses were investigated in comparison to long-term stimulations.
Co-reporter:Ying Wang;Jingjing Wang;Wei Du;Xiao Jun Feng
Analytical and Bioanalytical Chemistry 2011 Volume 399( Issue 10) pp:3475-3481
Publication Date(Web):2011 April
DOI:10.1007/s00216-010-4148-z
Caenorhabditis elegans (C. elegans) is a well-established model organism for investigating the correlations between behavioral and neuronal activities. Here, we demonstrated a microfluidic-based method that allowed stimulation-based neuronal analysis of immobilized C. elegans for identifying the neuronal effects of ethanol on the chemosensory responses of the right ASE (ASER) neuron. A one-piece microvalve was developed for the immobilization of C. elegans. Stimulations were realized by interface shifting of laminar flows. Well-fed transgenic worms expressing the calcium indicator G-CaMP in ASER neurons were used for in vivo fluorescence imaging. To evaluate the developed method, we first studied the effects of ethanol on the ASER neurons in response to a single NaCl stimulus. Results indicated that ethanol acutely suppressed the ON responses of ASER neurons to NaCl rather than the OFF response. Further studies of the adaptation of ASER neurons in response to NaCl and in the presence of ethanol suggested that ethanol interfered with the adaptation of neurons. The developed method exhibited the advantages of ease of operation and high throughput. We expect this new method to open up a new avenue for investigating the correlations between the behavioral and neuronal activities of C. elegans.
Co-reporter:Pu Chen, Xiaojun Feng, Jian Sun, Ying Wang, Wei Du and Bi-Feng Liu
Lab on a Chip 2010 vol. 10(Issue 11) pp:1472-1475
Publication Date(Web):19 Mar 2010
DOI:10.1039/B925096D
We present a microfluidic sample introduction approach based on a novel flow control mechanism, hydrodynamic gated injection. It has the advantages of easy and flexible flow control, similar to its analog, electrokinetic gated injection, but exhibits the unique properties of strong driving force and good biocompatibility, ideal for applications involving live biological samples. Theories for hydrodynamic gating were proposed and validated by both numerical simulations and flow visualization experiments. An investigation with fluorescein revealed that pico-liter samples can be injected with high repeatability (RSD <1.9%). Selective injections of GFP-transfected nematode eggs were demonstrated with a survival rate of >95%. We expect the developed method to be potentially useful for microfluidic cell and organism analysis, either as a sample introduction module or a stand-alone analyzer.
Co-reporter:Pu Chen, Xiaojun Feng, Rui Hu, Jian Sun, Wei Du, Bi-Feng Liu
Analytica Chimica Acta 2010 Volume 663(Issue 1) pp:1-6
Publication Date(Web):17 March 2010
DOI:10.1016/j.aca.2010.01.046
Microfluidic cell sorter allows efficient separation of small number of cells, which is beneficial in handling cells, especially primary cells that cannot be expanded to large populations. Here, we demonstrate a microfluidic fluorescence-activated cell sorter (μFACS) with a novel sorting mechanism, in which automatic on-chip sorting is realized by turning on/off the hydrodynamic gating valve when a fluorescent target is detected. Formation of the hydrodynamic gating valve was investigated by both numerical simulation and flow visualization experiment. Separation of fluorescent polystyrene beads was then conducted to evaluate this sorting mechanism and to optimize the separation conditions. Isolation of fluorescent HeLa-DsRed cells was further demonstrated with high purity and recovery rate. Viability of the sorted cells was also examined, suggesting a survival rate of more than 90%. We expect this sorting approach to find widespread applications in bioanalysis.
Co-reporter:Xiaohu Dong, Yiyao Yang, Jian Sun, Zhihong Liu and Bi-Feng Liu
Chemical Communications 2009 (Issue 26) pp:3883-3885
Publication Date(Web):08 Jun 2009
DOI:10.1039/B905571A
Two-photon excited (TPE) calcium fluorescent probes are designed and synthesized based on internal charge transfer (ICT) with high Ca2+ affinity and large two-photon action cross section, which can be used in living cells and detected with two-photon microscopy (TPM).
Co-reporter:Xiaojun Feng, Wei Du, Qingming Luo, Bi-Feng Liu
Analytica Chimica Acta 2009 Volume 650(Issue 1) pp:83-97
Publication Date(Web):14 September 2009
DOI:10.1016/j.aca.2009.04.051
Systems biology advocates the understanding of biology at the systems-level, which requires massive information of correlations among individual components in complex biological systems. Such comprehensive investigation entails the use of high-throughput analytical tools. Microfluidic technology holds high promise to facilitate the progress of biology by enabling miniaturization and upgrading of current biological research tools due to its advantages such as low sample consumption, reduced analysis time, high-throughput and compatible sizes with most biological samples. In this article, we documented the recent applications of microfluidic chips in biological researches at the molecular level, cellular level and organism level, serving the purpose for systems-level understanding of biology.
Co-reporter:Guisen Zhang;Chungen Qian;Youzhi Xu;Xiaojun Feng;Wei Du
Journal of Separation Science 2009 Volume 32( Issue 3) pp:374-380
Publication Date(Web):
DOI:10.1002/jssc.200800507
Abstract
Chiral recognition of dansyl enantiomeric amino acids by microfluidic open tubular CEC (μOTCEC) with fluorescence detection was demonstrated. Avidin was employed as the chiral selector immobilized on the microchannel wall, which functioned as the chiral stationary phase (CSP) by physical adsorption. The condition of CSP on the glass wall was characterized using field emission SEM. Results indicated that avidin was homogenously distributed on the microchannel surface. Two parameters that played essential roles in μOTCEC for chiral recognition were investigated. Buffer pH could greatly change the amount of adsorption of avidin on the channel wall by altering the electrostatic attraction between them. Methanol, the organic additive to the running buffer, was also found significant for controlling the quality of the μOTCEC chiral separation by regulating the hydrophobic interaction between the enantiomers and the CSP. Under the optimized conditions, four dansyl racemic amino acids were then successfully separated by μOTCEC within 100 s with resolutions of 2.43, 1.88, 3.01 and 2.65 for dansyl-Ser, dansyl-Met, dansyl-Thr and dansyl-Val, respectively. Furthermore, a comparison with microfluidic CZE was investigated demonstrating that μOTCEC was a promising method for rapid chiral recognition.
Co-reporter:Zhaowei Zhang;Xiaojun Feng;Wei Du;Qingming Luo
Journal of Separation Science 2009 Volume 32( Issue 3) pp:364-373
Publication Date(Web):
DOI:10.1002/jssc.200800503
Abstract
Membrane proteins are generally of natural low abundance and insoluble to aqueous solutions. Thus, investigation of membrane proteins is relatively hampered since efficient separation of membrane proteins are rather challenging. Microseparation approaches certainly play an essential role in fulfilling such demanding investigations due to their significant advantages of high throughput, reduced separation time, and low sample consumption. In this review, recent developments of microseparation are documented with aspects of three key separation methods, including CE, micro-LC and microchip. Preparation of membrane proteins prior to separation is also discussed, including solubilization and preconcentration. Certainly, more applications of microseparation approaches in membrane protein separations can be expected in the near future.
Co-reporter:Youzhi Xu, Xiaojun Feng, Wei Du, Xin Liu, Qingming Luo and Bi-Feng Liu
Analytical Chemistry 2008 Volume 80(Issue 18) pp:6935
Publication Date(Web):August 12, 2008
DOI:10.1021/ac801335y
In this paper, nonequilibrium capillary electrophoresis (NECE) was attempted for the first time to investigate a dual equilibrium system, where the intramolecular G-quadruplex folding was in competition with the intermolecular duplex formation. Samples of an equilibrium mixture of human telomeric DNA and its complementary strands were separated in capillaries under nonequilibrium conditions without K+. Polyethylene oxide was added to the running buffer facilitating the separation of single-stranded DNA, duplex, and G-quadruplex. Thus, the folding/unfolding rate constants of the G-quadruplex and the association/dissociation constants of the duplex could be simultaneously derived from the same experiment. Results indicated that the duplex formation induced minimal influence on the G-quadruplex folding. On the basis of the kinetic characterization of the G-quadruplex at varying temperatures, the thermodynamic parameters of the G-quadruplex could also be determined. Thus, the NECE method provided a new avenue for studying the kinetics and thermodynamics of nucleic acids within dual equilibrium systems with significant advantages of extreme-low sample cost (∼10−18 mol) and high repeatability.
Co-reporter:Xiaojun Feng;Sheng Chen;Youzhi Xu;Wei Du;Qingming Luo
Journal of Separation Science 2008 Volume 31( Issue 5) pp:824-828
Publication Date(Web):
DOI:10.1002/jssc.200700514
Abstract
Biogenic amines are a group of biological molecules derived from the enzymatic decarboxylation of natural amino acids. They can be found in a variety of foods and some of them are involved in essential cellular pathways regulating cellular functions. To address the issues raised by conventional detection methods for biogenic amines, such as laborious sample preparation and limited sensitivity, a new micellar electrokinetic chromatography scheme was developed based on multiphoton excitation fluorescence (MPEF) detection. Six FITC-labeled biogenic amine species were used for the evaluation of this MEKC–MPEF method in comparison to single photon excitation fluorescence detection. The results indicated that MEKC–MPEF had superior resolution with a detection volume as low as aL. Quantitative analysis of varying concentrations of biogenic amine species has also been achieved suggesting a ymole mass detection limit, a linear dynamic range of about two orders of magnitude, and 95–105% recoveries. Furthermore, the biogenic amine profile of decayed oriental crucian carps was successfully determined and quantified using this new method.
Co-reporter:Guiseng Zhang, Wei Du, Bi-Feng Liu, Hideaki Hisamoto, Shigeru Terabe
Analytica Chimica Acta 2007 Volume 584(Issue 1) pp:129-135
Publication Date(Web):12 February 2007
DOI:10.1016/j.aca.2006.10.046
Electrokinetic gating, functioning as a micro-valve, has been widely employed in microfluidic chips for sample injection and flow switch. Investigating its valving performance is fundamentally vital for microfluidics and microfluidics-based chemical analysis. In this paper, electrokinetic gating valve in microchannels was evaluated using optical imaging technique. Microflow profiles at channels junction were examined, revealing that molecular diffusion played a significant role in the valving disable; which could cause analyte leakage in sample injection. Due to diffusion, the analyte crossed the interface of the analyte flow and gating flow, and then formed a cometic tail-like diffusion area at channels junction. From theoretical calculation and some experimental evidences, the size of the area was related to the diffusion coefficient and the velocity of analytes. Additionally, molecular diffusion was also believed to be another reason of sampling bias in gated injection.
Co-reporter:Sheng Chen, Youzhi Xu, Fei Xu, Xiaojun Feng, Wei Du, Qingming Luo, Bi-Feng Liu
Journal of Chromatography A 2007 Volume 1162(Issue 2) pp:149-153
Publication Date(Web):31 August 2007
DOI:10.1016/j.chroma.2007.05.046
In this article, it was demonstrated that separation and determination of 20 amino acids were accomplished by micellar electrokinetic chromatography (MEKC) coupling with novel multiphoton excited fluorescence (MPEF) detection method. Different from MPEF achieved by expensive fs laser, continuous wave (CW) diode laser of ultra-low cost was uniquely employed in our MPEF system. Amino acids were fluorescently labeled with fluorescein isothiocyanate (FITC), and were subjected to sodium dodecyl sulfate (SDS)-based MEKC separation and CW-based MPEF detection. The result was compared with that by single photon excited fluorescence (SPEF), which indicated that MPEF had the advantages of better mass detectability and higher separation selectivity over SPEF. Quantitative analysis was performed and revealed linear dynamic range of over 2 orders of magnitude, with mass detection limit down to ymole level. To evaluate the reliability, this method was successfully applied for analyzing a commercial nutrition supplement liquid.
Co-reporter:Wei Du;Sheng Chen;Youzhi Xu;Qingming Luo;Zhe Chen
Journal of Separation Science 2007 Volume 30(Issue 6) pp:906-915
Publication Date(Web):20 MAR 2007
DOI:10.1002/jssc.200600477
Multiphoton excitation is a relatively old concept in quantum optics. But using multiphoton excitation fluorescence (MPEF) for bioanalysis is still in its infancy. Recently, MPEF has been introduced into the microseparation field, particularly CE, as a novel detection method. In this paper, MPEF detection for CE is reviewed, including MPEF fundamentals, approaches to achieving MPEF, detector configurations and applications in biological and environmental analyses. Emphasis will be placed on some recent advances of CE-MPEF in our laboratory. Challenges and future prospects are also discussed.
Co-reporter:Shixia Zhou, Juqiang Lin, Wei Du, Zhihong Zhang, Qingming Luo, Bi-Feng Liu, Yiqun Dai
Journal of Chromatography B 2006 Volume 844(Issue 1) pp:158-162
Publication Date(Web):21 November 2006
DOI:10.1016/j.jchromb.2006.06.038
In this paper, a novel strategy was reported to characterize dynamics of proteinase activation based on capillary electrophoresis (CE), using caspase-2 as the model system. A fusion protein conjugating an amino acid sequence VDVAD with two fluorescent proteins enhanced cyan fluorescence protein (ECFP) and red fluorescence protein (DsRed), ECFP–VDVAD–DsRed, was specially designed and expressed in HeLa cells as the substrate of proteinase caspase-2. In this substrate, the sequence VDVAD could be specifically recognized and cleaved by caspase-2 as soon as its activation was initiated with treatment of a certain dose of cisplatin to HeLa cells, which led to a break of the substrate into two fragments. Analyses of the cell lysates using CE in a time course of the apoptosis illustrated the dynamics of caspase-2 activation. It showed that the employment of fusion fluorescent protein greatly facilitated both CE separation and identification of the analytes. This result from cell colony by CE was compared with that from single cell achieved by optical imaging.
Co-reporter:Ying Wang, Lichun Tang, Xiaojun Feng, Wei Du, Bi-Feng Liu
Neuroscience Research (December 2011) Volume 71(Issue 4) pp:341-347
Publication Date(Web):1 December 2011
DOI:10.1016/j.neures.2011.08.006
Ethanol affects the formation of learning and memory in many species. However, the molecular mechanisms underlying the behavioral effects of ethanol are still poorly understood. In Caenorhabditis elegans, gustatory plasticity is a simple learning paradigm, in which animals after prolonged pre-exposure to a chemo-attractive salt in the absence of food show chemo-aversion to this salt during subsequent chemotaxis test stage. We characterized the effect of ethanol on this simple learning model. Our results showed that ethanol administration interfered with gustatory plasticity during pre-exposure or test stage in well-fed worms. Genetic analysis revealed that one mutant previously implicated involved in acute ethanol responses, slo-1, as well as two mutants with defects in serotonin synthesis, tph-1 and bas-1, failed to exhibit ethanol interference with gustatory plasticity. Furthermore, two metabotropic serotonin receptors, SER-4 and SER-7, were found to be involved in ethanol-mediated gustatory plasticity. In addition, the tph-1 and ser-4 loci were also involved in ethanol's effect on locomotion behavior. These data suggested an essential role of serotonin signaling in modulating acute effects of ethanol.Highlights► Ethanol impairs gustatory plasticity in C. elegans. slo-1 signaling modulates this effect of ethanol. ► Serotonin and its G-protein-coupled receptors modulate this ethanol's effect. ► Serotonin pathway is also involved in acute ethanol's effect on locomotion.
Co-reporter:Xiaohu Dong, Yiyao Yang, Jian Sun, Zhihong Liu and Bi-Feng Liu
Chemical Communications 2009(Issue 26) pp:NaN3885-3885
Publication Date(Web):2009/06/08
DOI:10.1039/B905571A
Two-photon excited (TPE) calcium fluorescent probes are designed and synthesized based on internal charge transfer (ICT) with high Ca2+ affinity and large two-photon action cross section, which can be used in living cells and detected with two-photon microscopy (TPM).