(2E,6E)-3,7,11-TRIMETHYL-2,6,10-DODECATRIEN-1-YL TRIHYDROGEN DIPHOSPHATE

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CAS: 372-97-4
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Synonyms: (2E,6E)-3,7,11-TRIMETHYL-2,6,10-DODECATRIEN-1-YL TRIHYDROGEN DIPHOSPHATE

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Jay D. Keasling

California Institute of Quantitative Biomedical Research
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Co-reporter: Xinkai Xie, James Kirby, Jay D. Keasling
pp: 20-28
Publication Date(Web):June 2012
DOI: 10.1016/j.phytochem.2012.02.022
Genome sequence analysis of Ricinus communis has indicated the presence of at least 22 putative terpene synthase (TPS) genes, 13 of which appear to encode sesquiterpene synthases (SeTPSs); however, no SeTPS genes have been isolated from this plant to date. cDNAs were recovered for six SeTPS candidates, and these were subjected to characterization in vivo and in vitro. The RcSeTPS candidates were expressed in either Escherichia coli or Saccharomyces cerevisiae strains with engineered sesquiterpene biosynthetic pathways, but only two (RcSeTPS1 and RcSeTPS7) produced detectable levels of product. In order to check whether the engineered microbial hosts were adequately engineered for sesquiterpene production, a selection of SeTPS genes was chosen from other plant species and demonstrated consistently high sesquiterpene titers. Activity could be demonstrated in vitro for two of the RcSeTPS candidates (RcSeTPS5 and RcSeTPS10) that were not observed to be functional in our microbial hosts. RcSeTPS1 produced two products, (−)-α-copaene and (+)-δ-cadinene, while RcSeTPS7 produced a single product, (E, E)-α-farnesene. Both RcSeTPS5 and RcSeTPS10 produced multiple sesquiterpenes.Graphical abstractFour sesquiterpene synthases (SeTPSs) from Ricinus communis were characterized and represent the first examples of SeTPSs from the Euphorbiaceae. Challenges faced in the isolation and functional expression of cDNAs for all putative SeTPSs in the R. communis genome are described.Image for unlabelled figureHighlights► Analysis of Ricinus communis establishes up to 13 putative sesquiterpene synthases (SeTPSs). ► Only four of the recovered cDNAs were found to produce sesquiterpene products. ► Production levels in engineered microbial hosts were low compared to other plant SeTPSs. ► Verified products include (−)-α-copaene, (+)-δ-cadinene, and (E, E)-α-farnesene.

Huimin Zhao

University of Illinois
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Gregory A. Weiss

University of California
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Yi Tang

University of California
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Carol A. Fierke

University of Michigan
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Robert T. Kennedy

University of Michigan
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George Barany

University of Minnesota
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C. Dale Poulter

University of Utah
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Co-reporter: Jian-Jung Pan, Jose O. Solbiati, Gurusankar Ramamoorthy, Brandan S. Hillerich, Ronald D. Seidel, John E. Cronan, Steven C. Almo, and C. Dale Poulter
pp: 77
Publication Date(Web):April 20, 2015
DOI: 10.1021/acscentsci.5b00115
Squalene (SQ) is an intermediate in the biosynthesis of sterols in eukaryotes and a few bacteria and of hopanoids in bacteria where they promote membrane stability and the formation of lipid rafts in their hosts. The genes for hopanoid biosynthesis are typically located on clusters that consist of four highly conserved genes—hpnC, hpnD, hpnE, and hpnF—for conversion of farnesyl diphosphate (FPP) to hopene or related pentacyclic metabolites. While hpnF is known to encode a squalene cyclase, the functions for hpnC, hpnD, and hpnE are not rigorously established. The hpnC, hpnD, and hpnE genes from Zymomonas mobilis and Rhodopseudomonas palustris were cloned into Escherichia coli, a bacterium that does not contain genes homologous to hpnC, hpnD, and hpnE, and their functions were established in vitro and in vivo. HpnD catalyzes formation of presqualene diphosphate (PSPP) from two molecules of FPP; HpnC converts PSPP to hydroxysqualene (HSQ); and HpnE, a member of the amine oxidoreductase family, reduces HSQ to SQ. Collectively the reactions catalyzed by these three enzymes constitute a new pathway for biosynthesis of SQ in bacteria.

Richard W. Gross

Washington University
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David E. Cane

Brown University
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Co-reporter: Wayne K.W. Chou, Haruo Ikeda, David E. Cane
pp: 6627-6632
Publication Date(Web):
DOI: 10.1016/j.tet.2011.05.084